Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788821.1| F-actin-capping protein subunit beta [Bos tauru... 549 e-156
>ref|NP_788821.1| F-actin-capping protein subunit beta [Bos taurus].
Length = 301
Score = 549 bits (1415), Expect = e-156
Identities = 271/271 (100%), Positives = 271/271 (100%)
Frame = +2
Query: 107 SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 286
SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL
Sbjct: 31 SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 90
Query: 287 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 466
CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL
Sbjct: 91 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 150
Query: 467 WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK 646
WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK
Sbjct: 151 WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK 210
Query: 647 SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN 826
SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN
Sbjct: 211 SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN 270
Query: 827 GLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
GLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 271 GLRSVQTFADKSKQEALKNDLVEALKRKQQC 301
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,485,066
Number of extensions: 1122410
Number of successful extensions: 3469
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3467
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535384.2| PREDICTED: similar to F-actin capping protein b... 551 e-157
>ref|XP_535384.2| PREDICTED: similar to F-actin capping protein beta subunit [Canis
familiaris].
Length = 280
Score = 551 bits (1420), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 9 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 68
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 69 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 128
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 129 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 188
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 189 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 248
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 249 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,336,828
Number of extensions: 1165561
Number of successful extensions: 3438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3436
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004921.1| F-actin-capping protein subunit beta isoform 1 ... 551 e-157
Alignment gi|NP_001193469.1| F-actin-capping protein subunit beta isoform... 512 e-145
>ref|NP_004921.1| F-actin-capping protein subunit beta isoform 1 [Homo sapiens].
Length = 272
Score = 551 bits (1420), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
>ref|NP_001193469.1| F-actin-capping protein subunit beta isoform 2 [Homo sapiens].
Length = 277
Score = 512 bits (1318), Expect = e-145
Identities = 251/270 (92%), Positives = 258/270 (95%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
NGLRS+ D K + L+ +L + L ++Q
Sbjct: 241 NGLRSIDAIPDNQKFKQLQRELSQVLTQRQ 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,393,690
Number of extensions: 1135090
Number of successful extensions: 3360
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033928.1| F-actin-capping protein subunit beta isoform b ... 551 e-157
Alignment gi|NP_001032850.1| F-actin-capping protein subunit beta isoform... 511 e-145
>ref|NP_033928.1| F-actin-capping protein subunit beta isoform b [Mus musculus].
Length = 272
Score = 551 bits (1420), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
>ref|NP_001032850.1| F-actin-capping protein subunit beta isoform a [Mus musculus].
Length = 277
Score = 511 bits (1315), Expect = e-145
Identities = 251/270 (92%), Positives = 258/270 (95%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
NGLRS+ D K + L+ +L + L ++Q
Sbjct: 241 NGLRSLDAIPDNHKFKQLQRELSQVLTQRQ 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,014,538
Number of extensions: 946150
Number of successful extensions: 2815
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106915.1| F-actin-capping protein subunit beta [Sus sc... 551 e-157
Alignment gi|NP_001090922.1| F-actin capping protein subunit beta 2 [Sus ... 543 e-155
Alignment gi|NP_001090925.1| F-actin-capping protein subunit beta [Sus sc... 509 e-145
>ref|NP_001106915.1| F-actin-capping protein subunit beta [Sus scrofa].
Length = 272
Score = 551 bits (1420), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
>ref|NP_001090922.1| F-actin capping protein subunit beta 2 [Sus scrofa].
Length = 272
Score = 543 bits (1398), Expect = e-155
Identities = 269/271 (99%), Positives = 270/271 (99%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
K+GSGTMNLGGSLTRQMEKDETVSD SPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQ 916
NGLRSVQTFADKSKQEALKNDLVEALKRKQQ
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQ 271
>ref|NP_001090925.1| F-actin-capping protein subunit beta [Sus scrofa].
Length = 277
Score = 509 bits (1311), Expect = e-145
Identities = 250/270 (92%), Positives = 257/270 (95%)
Frame = +2
Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
M DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MGDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
NGLRS+ D K + L+ +L + L ++Q
Sbjct: 241 NGLRSLDAIPDNHKFKQLQRELSQVLTQRQ 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,135,813
Number of extensions: 724059
Number of successful extensions: 2242
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2242
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002410
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 365 3e-98
>Sscrofa_Chr06
|| Length = 157765593
Score = 365 bits (184), Expect = 3e-98
Identities = 199/203 (98%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 833 aggtctgtgcagacttttgcagacaaatcaaaacaagaagctcttaagaacgacctggtg 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71843653 aggtctgtgcagacttttgcagacaaatcaaaacaagaagctcttaagaacgacctggtg 71843594
Query: 893 gaggctttgaagagaaagcagcagtgttaagcctctgcttcccactaaccggacacgccc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71843593 gaggctttgaagagaaagcagcagtgttaagcctctgcttcccactaaccggacacgccc 71843534
Query: 953 gccgtgcgctccttagattcctttcttaaaaacttg-tttctgctccctccctcgaacct 1011
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 71843533 gccgtgcgctccttagattcctttcttagaaacttgttttctgctccctccctcgaacct 71843474
Query: 1012 ccccttcccgacaggtcantgac 1034
||||| |||||||||||| ||||
Sbjct: 71843473 cccctccccgacaggtcagtgac 71843451
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 433 gtattttgaaggcggtgtctcatctgtctacctctgggatctggatcacggtttcgctgg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71859167 gtattttgaaggcggtgtctcatctgtctacctctgggatctggatcacggtttcgctgg 71859108
Query: 493 cgtgatcctcataaagaaggctggagacggatcaaagaagatcaaaggctgctgggattc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71859107 cgtgatcctcataaagaaggctggagacggatcaaagaagatcaaaggctgctgggattc 71859048
Query: 553 catccacgtggtggaagtgcagg 575
|||||||||||||||||||||||
Sbjct: 71859047 catccacgtggtggaagtgcagg 71859025
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 196 ggtccccagtctatgtgaagatctcctgtcttctgtcgaccagccactgaaaatcgctag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71893663 ggtccccagtctatgtgaagatctcctgtcttctgtcgaccagccactgaaaatcgctag 71893604
Query: 256 agacaaggtggtggggaaggattaccttttgtgcgactacaacagagatggggactccta 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71893603 agacaaggtggtggggaaggattaccttttgtgcgactacaacagagatggggactccta 71893544
Query: 316 caggt 320
|||||
Sbjct: 71893543 caggt 71893539
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 316 caggtcaccgtggagtaacaagtatgaccctcccttggaagatggggccatgccttctgc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71877067 caggtcaccgtggagtaacaagtatgaccctcccttggaagatggggccatgccttctgc 71877008
Query: 376 tcggctgagaaagctggaggtggaagccaacaatgcctttgaccagtaccgagacctgt 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71877007 tcggctgagaaagctggaggtggaagccaacaatgcctttgaccagtaccgagacctgt 71876949
Score = 234 bits (118), Expect = 8e-59
Identities = 121/122 (99%)
Strand = Plus / Minus
Query: 570 tgcaggagaagtccagcggtcgcaccgcgcattacaagctgacctccacggtgatgctgt 629
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71858693 tgcaggaaaagtccagcggtcgcaccgcgcattacaagctgacctccacggtgatgctgt 71858634
Query: 630 ggctgcaaaccaacaaatctggctctggcaccatgaacctcggaggaagccttaccagac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71858633 ggctgcaaaccaacaaatctggctctggcaccatgaacctcggaggaagccttaccagac 71858574
Query: 690 ag 691
||
Sbjct: 71858573 ag 71858572
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 106 gagtgatcagcagctggactgtgccttggacttgatgaggcgcctgcctccacagcaaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71926212 gagtgatcagcagctggactgtgccttggacttgatgaggcgcctgcctccacagcaaat 71926153
Query: 166 cgagaaaaacctcagcgacctgatcgacctggt 198
|||||||||||||||||||||||||||||||||
Sbjct: 71926152 cgagaaaaacctcagcgacctgatcgacctggt 71926120
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 756 aggacatggaaaataaaatcagaagtacgctgaatgagatctactttggaaagacgaagg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71847532 aggacatggaaaataaaatcagaagtacgctgaatgagatctactttggaaagacgaagg 71847473
Query: 816 acatcgtcaacgggctgaggt 836
|||||||||||||||||||||
Sbjct: 71847472 acatcgtcaacgggctgaggt 71847452
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 689 cagatggagaaggatgagactgtgagcgactgctccccgcacatagccaacatcgggcgc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71848128 cagatggagaaggatgagactgtgagcgactgctccccgcacatagccaacatcgggcgc 71848069
Query: 749 ctggtagagg 758
||||||||||
Sbjct: 71848068 ctggtagagg 71848059
Score = 123 bits (62), Expect = 2e-25
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 1 ggatgttcactcctgggcacccggggaagtggaagcgccgggccctgctgcnnnnnnnag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 71985441 ggatgttcactcctgggcacccggggaagtggaagcgccgggccctgctgcgggggggag 71985382
Query: 61 agccacagacgccgggaccggga 83
|||||||||||||||||||||||
Sbjct: 71985381 agccacagacgccgggaccggga 71985359
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,373,107
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 9
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)