Animal-Genome cDNA 20110601C-002410


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_788821.1| F-actin-capping protein subunit beta [Bos tauru...   549   e-156

>ref|NP_788821.1| F-actin-capping protein subunit beta [Bos taurus].
          Length = 301

 Score =  549 bits (1415), Expect = e-156
 Identities = 271/271 (100%), Positives = 271/271 (100%)
 Frame = +2

Query: 107 SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 286
           SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL
Sbjct: 31  SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 90

Query: 287 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 466
           CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL
Sbjct: 91  CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 150

Query: 467 WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK 646
           WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK
Sbjct: 151 WDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK 210

Query: 647 SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN 826
           SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN
Sbjct: 211 SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVN 270

Query: 827 GLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
           GLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 271 GLRSVQTFADKSKQEALKNDLVEALKRKQQC 301


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,485,066
Number of extensions: 1122410
Number of successful extensions: 3469
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3467
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535384.2| PREDICTED: similar to F-actin capping protein b...   551   e-157

>ref|XP_535384.2| PREDICTED: similar to F-actin capping protein beta subunit [Canis
           familiaris].
          Length = 280

 Score =  551 bits (1420), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 9   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 68

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 69  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 128

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 129 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 188

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 189 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 248

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
           NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 249 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 280


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,336,828
Number of extensions: 1165561
Number of successful extensions: 3438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3436
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004921.1| F-actin-capping protein subunit beta isoform 1 ...   551   e-157
Alignment   gi|NP_001193469.1| F-actin-capping protein subunit beta isoform...   512   e-145

>ref|NP_004921.1| F-actin-capping protein subunit beta isoform 1 [Homo sapiens].
          Length = 272

 Score =  551 bits (1420), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
           NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272


>ref|NP_001193469.1| F-actin-capping protein subunit beta isoform 2 [Homo sapiens].
          Length = 277

 Score =  512 bits (1318), Expect = e-145
 Identities = 251/270 (92%), Positives = 258/270 (95%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
           NGLRS+    D  K + L+ +L + L ++Q
Sbjct: 241 NGLRSIDAIPDNQKFKQLQRELSQVLTQRQ 270


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,393,690
Number of extensions: 1135090
Number of successful extensions: 3360
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033928.1| F-actin-capping protein subunit beta isoform b ...   551   e-157
Alignment   gi|NP_001032850.1| F-actin-capping protein subunit beta isoform...   511   e-145

>ref|NP_033928.1| F-actin-capping protein subunit beta isoform b [Mus musculus].
          Length = 272

 Score =  551 bits (1420), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
           NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272


>ref|NP_001032850.1| F-actin-capping protein subunit beta isoform a [Mus musculus].
          Length = 277

 Score =  511 bits (1315), Expect = e-145
 Identities = 251/270 (92%), Positives = 258/270 (95%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
           NGLRS+    D  K + L+ +L + L ++Q
Sbjct: 241 NGLRSLDAIPDNHKFKQLQRELSQVLTQRQ 270


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,014,538
Number of extensions: 946150
Number of successful extensions: 2815
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001106915.1| F-actin-capping protein subunit beta [Sus sc...   551   e-157
Alignment   gi|NP_001090922.1| F-actin capping protein subunit beta 2 [Sus ...   543   e-155
Alignment   gi|NP_001090925.1| F-actin-capping protein subunit beta [Sus sc...   509   e-145

>ref|NP_001106915.1| F-actin-capping protein subunit beta [Sus scrofa].
          Length = 272

 Score =  551 bits (1420), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 919
           NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272


>ref|NP_001090922.1| F-actin capping protein subunit beta 2 [Sus scrofa].
          Length = 272

 Score =  543 bits (1398), Expect = e-155
 Identities = 269/271 (99%), Positives = 270/271 (99%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           K+GSGTMNLGGSLTRQMEKDETVSD SPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQQ 916
           NGLRSVQTFADKSKQEALKNDLVEALKRKQQ
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQ 271


>ref|NP_001090925.1| F-actin-capping protein subunit beta [Sus scrofa].
          Length = 277

 Score =  509 bits (1311), Expect = e-145
 Identities = 250/270 (92%), Positives = 257/270 (95%)
 Frame = +2

Query: 104 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 283
           M DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1   MGDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60

Query: 284 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 463
           LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120

Query: 464 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 643
           LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180

Query: 644 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 823
           KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240

Query: 824 NGLRSVQTFADKSKQEALKNDLVEALKRKQ 913
           NGLRS+    D  K + L+ +L + L ++Q
Sbjct: 241 NGLRSLDAIPDNHKFKQLQRELSQVLTQRQ 270


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,135,813
Number of extensions: 724059
Number of successful extensions: 2242
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2242
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002410
         (1034 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         365   3e-98

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  365 bits (184), Expect = 3e-98
 Identities = 199/203 (98%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                            
Query: 833      aggtctgtgcagacttttgcagacaaatcaaaacaagaagctcttaagaacgacctggtg 892
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71843653 aggtctgtgcagacttttgcagacaaatcaaaacaagaagctcttaagaacgacctggtg 71843594

                                                                            
Query: 893      gaggctttgaagagaaagcagcagtgttaagcctctgcttcccactaaccggacacgccc 952
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71843593 gaggctttgaagagaaagcagcagtgttaagcctctgcttcccactaaccggacacgccc 71843534

                                                                            
Query: 953      gccgtgcgctccttagattcctttcttaaaaacttg-tttctgctccctccctcgaacct 1011
                |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 71843533 gccgtgcgctccttagattcctttcttagaaacttgttttctgctccctccctcgaacct 71843474

                                       
Query: 1012     ccccttcccgacaggtcantgac 1034
                ||||| |||||||||||| ||||
Sbjct: 71843473 cccctccccgacaggtcagtgac 71843451



 Score =  283 bits (143), Expect = 9e-74
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                            
Query: 433      gtattttgaaggcggtgtctcatctgtctacctctgggatctggatcacggtttcgctgg 492
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71859167 gtattttgaaggcggtgtctcatctgtctacctctgggatctggatcacggtttcgctgg 71859108

                                                                            
Query: 493      cgtgatcctcataaagaaggctggagacggatcaaagaagatcaaaggctgctgggattc 552
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71859107 cgtgatcctcataaagaaggctggagacggatcaaagaagatcaaaggctgctgggattc 71859048

                                       
Query: 553      catccacgtggtggaagtgcagg 575
                |||||||||||||||||||||||
Sbjct: 71859047 catccacgtggtggaagtgcagg 71859025



 Score =  248 bits (125), Expect = 5e-63
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                            
Query: 196      ggtccccagtctatgtgaagatctcctgtcttctgtcgaccagccactgaaaatcgctag 255
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71893663 ggtccccagtctatgtgaagatctcctgtcttctgtcgaccagccactgaaaatcgctag 71893604

                                                                            
Query: 256      agacaaggtggtggggaaggattaccttttgtgcgactacaacagagatggggactccta 315
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71893603 agacaaggtggtggggaaggattaccttttgtgcgactacaacagagatggggactccta 71893544

                     
Query: 316      caggt 320
                |||||
Sbjct: 71893543 caggt 71893539



 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                            
Query: 316      caggtcaccgtggagtaacaagtatgaccctcccttggaagatggggccatgccttctgc 375
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71877067 caggtcaccgtggagtaacaagtatgaccctcccttggaagatggggccatgccttctgc 71877008

                                                                           
Query: 376      tcggctgagaaagctggaggtggaagccaacaatgcctttgaccagtaccgagacctgt 434
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71877007 tcggctgagaaagctggaggtggaagccaacaatgcctttgaccagtaccgagacctgt 71876949



 Score =  234 bits (118), Expect = 8e-59
 Identities = 121/122 (99%)
 Strand = Plus / Minus

                                                                            
Query: 570      tgcaggagaagtccagcggtcgcaccgcgcattacaagctgacctccacggtgatgctgt 629
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71858693 tgcaggaaaagtccagcggtcgcaccgcgcattacaagctgacctccacggtgatgctgt 71858634

                                                                            
Query: 630      ggctgcaaaccaacaaatctggctctggcaccatgaacctcggaggaagccttaccagac 689
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71858633 ggctgcaaaccaacaaatctggctctggcaccatgaacctcggaggaagccttaccagac 71858574

                  
Query: 690      ag 691
                ||
Sbjct: 71858573 ag 71858572



 Score =  184 bits (93), Expect = 6e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                            
Query: 106      gagtgatcagcagctggactgtgccttggacttgatgaggcgcctgcctccacagcaaat 165
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71926212 gagtgatcagcagctggactgtgccttggacttgatgaggcgcctgcctccacagcaaat 71926153

                                                 
Query: 166      cgagaaaaacctcagcgacctgatcgacctggt 198
                |||||||||||||||||||||||||||||||||
Sbjct: 71926152 cgagaaaaacctcagcgacctgatcgacctggt 71926120



 Score =  161 bits (81), Expect = 9e-37
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                            
Query: 756      aggacatggaaaataaaatcagaagtacgctgaatgagatctactttggaaagacgaagg 815
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71847532 aggacatggaaaataaaatcagaagtacgctgaatgagatctactttggaaagacgaagg 71847473

                                     
Query: 816      acatcgtcaacgggctgaggt 836
                |||||||||||||||||||||
Sbjct: 71847472 acatcgtcaacgggctgaggt 71847452



 Score =  139 bits (70), Expect = 3e-30
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                            
Query: 689      cagatggagaaggatgagactgtgagcgactgctccccgcacatagccaacatcgggcgc 748
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71848128 cagatggagaaggatgagactgtgagcgactgctccccgcacatagccaacatcgggcgc 71848069

                          
Query: 749      ctggtagagg 758
                ||||||||||
Sbjct: 71848068 ctggtagagg 71848059



 Score =  123 bits (62), Expect = 2e-25
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1        ggatgttcactcctgggcacccggggaagtggaagcgccgggccctgctgcnnnnnnnag 60
                |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 71985441 ggatgttcactcctgggcacccggggaagtggaagcgccgggccctgctgcgggggggag 71985382

                                       
Query: 61       agccacagacgccgggaccggga 83
                |||||||||||||||||||||||
Sbjct: 71985381 agccacagacgccgggaccggga 71985359


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,373,107
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 9
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)