Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 307 1e-83
Alignment gi|NP_001193520.1| nestin [Bos taurus]. 50 5e-06
Alignment gi|NP_001095783.1| sarcoplasmic reticulum histidine-rich calciu... 49 9e-06
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 307 bits (786), Expect = 1e-83
Identities = 168/267 (62%), Positives = 198/267 (74%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT++F L ILGTA A+PTQARF S HSNPTA SLS FQ+AET +E TA P VEDA
Sbjct: 1 MKTVVFFLCILGTAGAIPTQARFLSDHSNPTADSLSFFQEAET---SEHTAIPLVEVEDA 57
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE A S+E+H HHK EKSS+LKS+EE+H++SADQ++SY+QNLG Q+QEK+E DL EN
Sbjct: 58 ENEKETATSIEDHSHHKPEKSSLLKSEEENHDQSADQEESYNQNLGLQDQEKTESDLTEN 117
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ-----D 961
EY PTEGTL+LKEDM++PQKEK PES L HD SSIVDSNQQESITK EENQ D
Sbjct: 118 LEYSPTEGTLELKEDMSEPQKEKLPESF--LAHDVSSIVDSNQQESITKTEENQKQPVDD 175
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
SHPQLN S DL D+GNQ+QD + G++EGEKEP EV T ND +E E E+
Sbjct: 176 SHPQLN-----SQDLRDQGNQDQDTN---GEEEGEKEPGEVGTHNDEEERETELPKEPSN 227
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SD +LEESYQPTQ +MQ
Sbjct: 228 NKQEEDSTQSDAVLEESYQPTQESKMQ 254
>ref|NP_001193520.1| nestin [Bos taurus].
Length = 1798
Score = 49.7 bits (117), Expect = 5e-06
Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 31/236 (13%)
Frame = +2
Query: 503 FPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDAENE----------KEPAVSLEE 652
+P + SL + AE+L T E+ + R ++ EN+ +EP SLEE
Sbjct: 658 YPGKENQELVRSLEE-ENAESLRTLEKESQEPLRCQEVENQGTLRLLAKDNQEPLRSLEE 716
Query: 653 H------PHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQ--------EKSERDLI 790
P K S+ ++E+HE ++ ++L S E+ E+ +++L+
Sbjct: 717 EDQETSRPLGKENHESLRAPEDENHEALRPLERDKPESLSSLEEDQEAVRPPEREDQELL 776
Query: 791 ENSEYMPTEGTLDLKEDM--TQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDS 964
+ E E L+ED +P +E+ E + SL + + S + + + E ++
Sbjct: 777 RSLEKEDQEPLRSLEEDQEAVRPLEEENQELLRSLEKEKEESLRSLEDQEAMRPLEEENQ 836
Query: 965 HPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHE-----VDTLNDNQEEER 1117
P + + + + NQE K E + P E + +L ++QEE R
Sbjct: 837 EPLRSLEDQEAMRPLEEENQEPLRSLEKEKQEATRPPEEEKQEPLMSLEEDQEEMR 892
>ref|NP_001095783.1| sarcoplasmic reticulum histidine-rich calcium-binding protein [Bos
taurus].
Length = 871
Score = 48.9 bits (115), Expect = 9e-06
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Frame = +2
Query: 599 GRVEDAENEKEPAVSLEEH---PHHKAEKSSVLKSKEEDHEESA----------DQDQSY 739
G E+ E ++E V H P + KS+ + ED++++ ++D+
Sbjct: 552 GDEEEEEEKEEITVKFSHHVASPQPQGHKSAKEEDFPEDYKKAVPGHDHQGVPKEEDEDI 611
Query: 740 SQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLG-HDDSSIVD 916
LG Q ++D E G++ KE+M+ P+S + +G D S + +
Sbjct: 612 PARLGHQAPSHRQQD--HRDEGTGHRGSI--KEEMS-------PQSPEHIGVKDRSHLRE 660
Query: 917 SNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLN 1096
S+ +E + EE+ SH + N S+ D +Q+ + E E+E H +
Sbjct: 661 SDSEEDEEEKEEDHSSHEEANEGSEEGEDTRHGSLDDQEDE------EDEEEGHGLSLSQ 714
Query: 1097 DNQEEERE 1120
+ +EEE+E
Sbjct: 715 EEEEEEKE 722
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,960,679
Number of extensions: 1059485
Number of successful extensions: 4970
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4672
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 310 2e-84
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 310 2e-84
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 310 2e-84
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 213 2e-55
Alignment gi|XP_544971.2| PREDICTED: similar to dentin sialophosphoprotei... 52 2e-06
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 310 bits (793), Expect = 2e-84
Identities = 167/267 (62%), Positives = 198/267 (74%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT+LF LYILGTAAA+PT ARF S HS PTA SLSS QQAE LVT TA P VEDA
Sbjct: 1 MKTVLFFLYILGTAAAIPTNARFLSDHSKPTADSLSSIQQAEILVTPNNTAIPVLGVEDA 60
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE AVS++ HP+H+AEKSSVLKSKEE+H+ESADQ QSYSQ LG Q++E+SE DL EN
Sbjct: 61 ENEKEIAVSID-HPNHEAEKSSVLKSKEENHDESADQGQSYSQELGLQDEEESESDLSEN 119
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ-----D 961
EYMP+E TLDLKEDM +PQ +K E+ID L + SSIVD N QESITK E+ Q D
Sbjct: 120 LEYMPSERTLDLKEDMGEPQNKKLSENIDLLAPNISSIVDPNHQESITKTEKEQEQPIND 179
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
HPQLN+S+KHS D+SD+GN+EQD + P G+ EGE++P EV T ++NQE ER
Sbjct: 180 LHPQLNKSNKHSQDVSDQGNEEQDSNIPNGEGEGEEDPGEVGTHSNNQERERMFPKEHSN 239
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SDD+LEES QPTQ +MQ
Sbjct: 240 IKEEEDHTQSDDVLEESNQPTQVSKMQ 266
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 310 bits (793), Expect = 2e-84
Identities = 167/267 (62%), Positives = 198/267 (74%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT+LF LYILGTAAA+PT ARF S HS PTA SLSS QQAE LVT TA P VEDA
Sbjct: 1 MKTVLFFLYILGTAAAIPTNARFLSDHSKPTADSLSSIQQAEILVTPNNTAIPVLGVEDA 60
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE AVS++ HP+H+AEKSSVLKSKEE+H+ESADQ QSYSQ LG Q++E+SE DL EN
Sbjct: 61 ENEKEIAVSID-HPNHEAEKSSVLKSKEENHDESADQGQSYSQELGLQDEEESESDLSEN 119
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ-----D 961
EYMP+E TLDLKEDM +PQ +K E+ID L + SSIVD N QESITK E+ Q D
Sbjct: 120 LEYMPSERTLDLKEDMGEPQNKKLSENIDLLAPNISSIVDPNHQESITKTEKEQEQPIND 179
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
HPQLN+S+KHS D+SD+GN+EQD + P G+ EGE++P EV T ++NQE ER
Sbjct: 180 LHPQLNKSNKHSQDVSDQGNEEQDSNIPNGEGEGEEDPGEVGTHSNNQERERMFPKEHSN 239
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SDD+LEES QPTQ +MQ
Sbjct: 240 IKEEEDHTQSDDVLEESNQPTQVSKMQ 266
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 310 bits (793), Expect = 2e-84
Identities = 167/267 (62%), Positives = 198/267 (74%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT+LF LYILGTAAA+PT ARF S HS PTA SLSS QQAE LVT TA P VEDA
Sbjct: 1 MKTVLFFLYILGTAAAIPTNARFLSDHSKPTADSLSSIQQAEILVTPNNTAIPVLGVEDA 60
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE AVS++ HP+H+AEKSSVLKSKEE+H+ESADQ QSYSQ LG Q++E+SE DL EN
Sbjct: 61 ENEKEIAVSID-HPNHEAEKSSVLKSKEENHDESADQGQSYSQELGLQDEEESESDLSEN 119
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ-----D 961
EYMP+E TLDLKEDM +PQ +K E+ID L + SSIVD N QESITK E+ Q D
Sbjct: 120 LEYMPSERTLDLKEDMGEPQNKKLSENIDLLAPNISSIVDPNHQESITKTEKEQEQPIND 179
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
HPQLN+S+KHS D+SD+GN+EQD + P G+ EGE++P EV T ++NQE ER
Sbjct: 180 LHPQLNKSNKHSQDVSDQGNEEQDSNIPNGEGEGEEDPGEVGTHSNNQERERMFPKEHSN 239
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SDD+LEES QPTQ +MQ
Sbjct: 240 IKEEEDHTQSDDVLEESNQPTQVSKMQ 266
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 213 bits (543), Expect = 2e-55
Identities = 113/190 (59%), Positives = 138/190 (72%), Gaps = 5/190 (2%)
Frame = +2
Query: 668 AEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMT 847
AEKSSVLKSKEE+H+ESADQ QSYSQ LG Q++E+SE DL EN EYMP+E TLDLKEDM
Sbjct: 19 AEKSSVLKSKEENHDESADQGQSYSQELGLQDEEESESDLSENLEYMPSERTLDLKEDMG 78
Query: 848 QPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ-----DSHPQLNRSSKHSPDLSD 1012
+PQ +K E+ID L + SSIVD N QESITK E+ Q D HPQLN+S+KHS D+SD
Sbjct: 79 EPQNKKLSENIDLLAPNISSIVDPNHQESITKTEKEQEQPINDLHPQLNKSNKHSQDVSD 138
Query: 1013 RGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXXXXXXXXXTRSDDILEES 1192
+GN+EQD + P G+ EGE++P EV T ++NQE ER T+SDD+LEES
Sbjct: 139 QGNEEQDSNIPNGEGEGEEDPGEVGTHSNNQERERMFPKEHSNIKEEEDHTQSDDVLEES 198
Query: 1193 YQPTQAXQMQ 1222
QPTQ +MQ
Sbjct: 199 NQPTQVSKMQ 208
>ref|XP_544971.2| PREDICTED: similar to dentin sialophosphoprotein preproprotein [Canis
familiaris].
Length = 1429
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Frame = +2
Query: 509 SGHSNPTAASLSSFQQAETLVTAEQTATPTGR-VEDAENEKEPAVSLEEHPHHKAEKSSV 685
SG S+ + +S SS + + + ++ +G D+++ S + ++ S+
Sbjct: 660 SGSSSSSGSSNSSGSSSSSGSSGSDSSDSSGSDSSDSDSSNSSDSSDSDSSDSDSDSSNS 719
Query: 686 LKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEK 865
S + D +S+D D S S N + S+RD +S+ ++ + D D
Sbjct: 720 SDSSDSDSSDSSDSDSSDSSNSSDSDSSDSDRDSSNSSDSSDSDSS-DSDSDSDSDSNSN 778
Query: 866 FPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQD 1033
+S DS + DSS DS+ +S A +N +SH + N + + + S+ +++ D
Sbjct: 779 SSDSSDS--NSDSS--DSDSSDSSDSASDNDESHSKTNSGNGKNGNDSESDSEDSD 830
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,851,683
Number of extensions: 1100214
Number of successful extensions: 5789
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5188
Number of HSP's successfully gapped: 6
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens]. 270 3e-72
Alignment gi|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens]. 270 3e-72
>ref|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 270 bits (689), Expect = 3e-72
Identities = 152/267 (56%), Positives = 179/267 (67%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT LF L +LGTAAA+PT AR S HS PTA + V + TA P+ R E
Sbjct: 1 MKTGLFFLCLLGTAAAIPTNARLLSDHSKPTAET----------VAPDNTAIPSLRAEAE 50
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE AVS E+ HHKAEKSSVLKSKEE HE+SA+Q +S SQ LG ++QE S+ L N
Sbjct: 51 ENEKETAVSTEDDSHHKAEKSSVLKSKEESHEQSAEQGKSSSQELGLKDQEDSDGHLSVN 110
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQD----- 961
EY PTEGTLD+KEDM++PQ++K E+ D L SS DSNQQESITK EENQ+
Sbjct: 111 LEYAPTEGTLDIKEDMSEPQEKKLSENTDFLAPGVSSFTDSNQQESITKREENQEQPRNY 170
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
SH QLNRSSKHS L D+GNQEQDP+ G++E EKEP EV T NDNQE + E+
Sbjct: 171 SHHQLNRSSKHSQGLRDQGNQEQDPNISNGEEEEEKEPGEVGTHNDNQERKTELPREHAN 230
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SDDILEES QPTQ +MQ
Sbjct: 231 SKQEEDNTQSDDILEESDQPTQVSKMQ 257
>ref|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 270 bits (689), Expect = 3e-72
Identities = 152/267 (56%), Positives = 179/267 (67%), Gaps = 5/267 (1%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKT LF L +LGTAAA+PT AR S HS PTA + V + TA P+ R E
Sbjct: 1 MKTGLFFLCLLGTAAAIPTNARLLSDHSKPTAET----------VAPDNTAIPSLRAEAE 50
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
ENEKE AVS E+ HHKAEKSSVLKSKEE HE+SA+Q +S SQ LG ++QE S+ L N
Sbjct: 51 ENEKETAVSTEDDSHHKAEKSSVLKSKEESHEQSAEQGKSSSQELGLKDQEDSDGHLSVN 110
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQD----- 961
EY PTEGTLD+KEDM++PQ++K E+ D L SS DSNQQESITK EENQ+
Sbjct: 111 LEYAPTEGTLDIKEDMSEPQEKKLSENTDFLAPGVSSFTDSNQQESITKREENQEQPRNY 170
Query: 962 SHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXX 1141
SH QLNRSSKHS L D+GNQEQDP+ G++E EKEP EV T NDNQE + E+
Sbjct: 171 SHHQLNRSSKHSQGLRDQGNQEQDPNISNGEEEEEKEPGEVGTHNDNQERKTELPREHAN 230
Query: 1142 XXXXXXXTRSDDILEESYQPTQAXQMQ 1222
T+SDDILEES QPTQ +MQ
Sbjct: 231 SKQEEDNTQSDDILEESDQPTQVSKMQ 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,111,012
Number of extensions: 1084572
Number of successful extensions: 5727
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5327
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 177 2e-44
Alignment gi|XP_001474892.2| PREDICTED: hypothetical protein LOC100045736... 59 6e-09
Alignment gi|NP_001017955.2| zinc finger and SCAN domain containing 18 [M... 51 2e-06
Alignment gi|XP_003085292.1| PREDICTED: hypothetical protein LOC100504575... 49 6e-06
Alignment gi|NP_908998.1| retrotransposon-like protein 1 [Mus musculus]. 49 8e-06
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 177 bits (448), Expect = 2e-44
Identities = 113/272 (41%), Positives = 148/272 (54%), Gaps = 15/272 (5%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MK +L LL LGTA A+PT RF S HSNPT A TLVT E P V
Sbjct: 1 MKAVLLLLCALGTAVAIPTSTRFLSDHSNPTTA---------TLVTPEDATVPIAGV--- 48
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
E +E HP KAEK S L S+EE HE+S +QD++YS + +++E + DL +
Sbjct: 49 ----EATADIENHPSDKAEKPSALNSEEETHEQSTEQDKTYSFEVDLKDEEDGDGDLSVD 104
Query: 797 SEYMPTEG--TLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQ---- 958
PTEG TLDL+E ++PQ++ PE+ D +S VD NQ+ +ITK +E+Q
Sbjct: 105 ----PTEGTLTLDLQEGTSEPQQKSLPENGDFPATVSTSYVDPNQRANITKGKESQEQPV 160
Query: 959 -DSHPQLNRSSKHSPDLSDRGNQEQDPDSPT--------GKDEGEKEPHEVDTLNDNQEE 1111
DSH Q N SSK + DL +Q QDPD P ++E E+EP ++ +DNQEE
Sbjct: 161 SDSHQQPNESSKQTQDLKAEESQTQDPDIPNEEEEEEEDEEEEEEEEPEDIGAPSDNQEE 220
Query: 1112 EREVLXXXXXXXXXXXXTRSDDILEESYQPTQ 1207
+E L +SDD LEES QPTQ
Sbjct: 221 GKEPLEEQPTSKWEGNREQSDDTLEESSQPTQ 252
>ref|XP_001474892.2| PREDICTED: hypothetical protein LOC100045736 [Mus musculus].
Length = 238
Score = 59.3 bits (142), Expect = 6e-09
Identities = 36/181 (19%), Positives = 75/181 (41%)
Frame = +2
Query: 578 EQTATPTGRVEDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGS 757
EQ E + E+E EE + E+ + +E+ E+ +Q+Q +
Sbjct: 18 EQEQEQEQEQEQEQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQEEEEEEEE 77
Query: 758 QEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESI 937
QEQE+ E++ + + E + +++ Q Q+++ E ++ + Q+E
Sbjct: 78 QEQEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQ--EQEQEEEQ 135
Query: 938 TKAEENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEER 1117
+ +E + Q + + + QEQ+ + + E E+E E QE+E+
Sbjct: 136 EQEQEQEQEEEQEQEQEQEEQEEQEEQEQEQEQEQEQEEQEQEQEQEEEQEQEQEQEQEQ 195
Query: 1118 E 1120
E
Sbjct: 196 E 196
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/181 (18%), Positives = 75/181 (41%)
Frame = +2
Query: 578 EQTATPTGRVEDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGS 757
EQ E+ E E+E EE + ++ + +E++ E+ ++++ +
Sbjct: 22 EQEQEQEQEQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQEEEEEEEEQEQE 81
Query: 758 QEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESI 937
QE+++ E++ E E E + +++ Q Q+E+ E + + Q++
Sbjct: 82 QEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQEQEQEEEQEQEQEQ 141
Query: 938 TKAEENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEER 1117
+ EE + Q + + + QEQ+ + E E+E + QE+E+
Sbjct: 142 EQEEEQEQEQEQEEQEEQEEQEQEQEQEQEQEEQEQEQEQEEEQEQEQEQEQEQEQEQEQ 201
Query: 1118 E 1120
E
Sbjct: 202 E 202
Score = 57.8 bits (138), Expect = 2e-08
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Frame = +2
Query: 608 EDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDL 787
++ E E+E +E + E+ + +E++ E+ Q+Q Q QEQE+ E
Sbjct: 69 QEEEEEEEEQEQEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQE 128
Query: 788 IENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSH 967
E E E + +E+ Q Q+++ E + + + +QE + EE Q+
Sbjct: 129 QEQEEEQEQEQEQEQEEEQEQEQEQEEQEEQEEQEQEQEQEQEQEEQEQEQEQEEEQEQE 188
Query: 968 PQLNRSSKHSPDLSDRGNQEQDPDSPTGKD-EGEKEPH 1078
+ + + + QEQ+ + ++ E E+EP+
Sbjct: 189 QEQEQEQEQEQEQEQEQEQEQEQEQEQEQEQEQEQEPN 226
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/181 (18%), Positives = 73/181 (40%)
Frame = +2
Query: 578 EQTATPTGRVEDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGS 757
EQ E E E+E +E + E+ + ++++ E+ +Q++ +
Sbjct: 20 EQEQEQEQEQEQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQEEEEEEEEQE 79
Query: 758 QEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESI 937
QEQE+ E++ E + E + ++ Q Q+++ E + + Q++
Sbjct: 80 QEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQEQEQEEEQEQEQ 139
Query: 938 TKAEENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEER 1117
+ +E + Q + + QEQ+ + + E E+E + QE+E+
Sbjct: 140 EQEQEEEQEQEQEQEEQEEQEEQEQEQEQEQEQEEQEQEQEQEEEQEQEQEQEQEQEQEQ 199
Query: 1118 E 1120
E
Sbjct: 200 E 200
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/167 (19%), Positives = 73/167 (43%)
Frame = +2
Query: 620 NEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENS 799
+E+E E+ + E+ + +EE EE +Q++ + QEQE+ + E
Sbjct: 15 SEQEQEQEQEQEQEQEQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQEEEEE 74
Query: 800 EYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLN 979
E + + +++ + ++E+ E + +QE + EE Q+ +
Sbjct: 75 EEEQEQEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQEQEQEEE 134
Query: 980 RSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEERE 1120
+ + + + QEQ+ + ++E E+E E + + QE+E+E
Sbjct: 135 QEQEQEQEQEEEQEQEQEQEEQEEQEEQEQE-QEQEQEQEEQEQEQE 180
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/171 (16%), Positives = 69/171 (40%)
Frame = +2
Query: 608 EDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDL 787
E+ E E+E +E + ++ + +EE+ +E ++Q Q QE+E+ +
Sbjct: 44 EEEEQEQEEQEQEQEQQQEQEQEQEQEEEEEEEEQEQEQEEQEQEQEEQEQEEEQEQEQE 103
Query: 788 IENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSH 967
E + E +E + ++E+ E + + Q++ + EE ++
Sbjct: 104 QEQQQEQQQEQEEQEQEQEQEEEQEQEQEEEQEQEQEQEQEEEQEQEQEQEEQEEQEEQE 163
Query: 968 PQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEERE 1120
+ + + ++ +E+ + E E+E + QE+E+E
Sbjct: 164 QEQEQEQEQEEQEQEQEQEEEQEQEQEQEQEQEQEQEQEQEQEQEQEQEQE 214
Score = 50.8 bits (120), Expect = 2e-06
Identities = 34/190 (17%), Positives = 75/190 (39%)
Frame = +2
Query: 551 QQAETLVTAEQTATPTGRVEDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQD 730
+Q E EQ E E E+E E+ + E+ + +E++ EE +Q+
Sbjct: 30 EQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQEEEEEEEEQEQEQEE-QEQE 88
Query: 731 QSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSI 910
Q + QEQE+ + E + + +E+ + ++E+ E ++
Sbjct: 89 QEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQEQEQEEEQEQEQEQEQEEEQE 148
Query: 911 VDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDT 1090
+ Q+E + E+ Q+ + + + + +++ + E E+E +
Sbjct: 149 QEQEQEEQEEQEEQEQEQEQEQEQEEQEQEQEQEEEQEQEQEQEQEQEQEQEQEQEQEQE 208
Query: 1091 LNDNQEEERE 1120
QE+E+E
Sbjct: 209 QEQEQEQEQE 218
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Frame = +2
Query: 674 KSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQP 853
K S +E++ E+ +Q+Q + QEQE+ E + E E + +E +
Sbjct: 10 KRSCASEQEQEQEQEQEQEQEQEEQEQEQEQEEQEEEEQEQEEQEQEQEQQQEQEQEQEQ 69
Query: 854 QKEKFPESIDSLGHDDSSIVDSNQQESITKAE---ENQDSHPQLNRSSKHSPDLSDRGNQ 1024
++E+ E + + + +QE + E E Q Q + + + Q
Sbjct: 70 EEEEEEEEQEQEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQQQEQEEQEQEQEQEEEQEQ 129
Query: 1025 EQDPDSPTGKDEGEKEPHEVDTLNDNQEEERE 1120
EQ+ + +++ ++E E + + QEE+ E
Sbjct: 130 EQEEEQEQEQEQEQEEEQEQEQEQEEQEEQEE 161
Score = 48.9 bits (115), Expect = 8e-06
Identities = 30/177 (16%), Positives = 75/177 (42%), Gaps = 6/177 (3%)
Frame = +2
Query: 608 EDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEE------SADQDQSYSQNLGSQEQE 769
E+ E E+E E+ + E+ + +E++ +E +++Q Q Q+++
Sbjct: 51 EEQEQEQEQQQEQEQEQEQEEEEEEEEQEQEQEEQEQEQEEQEQEEEQEQEQEQEQQQEQ 110
Query: 770 KSERDLIENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAE 949
+ E++ E + E + +E+ Q Q+++ E + + Q++ + +
Sbjct: 111 QQEQEEQEQEQEQEEEQEQEQEEEQEQEQEQEQEEEQEQEQEQEEQEEQEEQEQEQEQEQ 170
Query: 950 ENQDSHPQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEERE 1120
E ++ + + + + QEQ+ + + E E+E + QE+E+E
Sbjct: 171 EQEEQEQEQEQEEEQEQEQEQEQEQEQEQEQ---EQEQEQEQEQEQEQEQEQEQEQE 224
>ref|NP_001017955.2| zinc finger and SCAN domain containing 18 [Mus musculus].
Length = 809
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Frame = +2
Query: 641 SLEEHPHHKAEKSSVLKSKEEDH----EESADQDQSYSQNLGSQEQEKSERDLIENSEYM 808
S +E P + E S +S +++ +ES+ + Q Y Q SQ+QE S++D E
Sbjct: 225 SEQEEPSQQEESSQQEESSQQEELSQQKESSQKAQPYQQEEPSQQQEPSQKDQPSQQEE- 283
Query: 809 PTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEE-NQDSHP--QLN 979
P++ ++D Q+E S + S NQQE ++ +E +Q P Q
Sbjct: 284 PSQQQEPSQKDQPSQQEEL------SQQEEPSQKDQCNQQEEPSQQQEPSQKDQPNQQAE 337
Query: 980 RSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQE 1108
S + P D+ NQ+++P S + + ++EP + D N +E
Sbjct: 338 LSQQEEPSQKDQCNQQEEP-SQKDQCKQQEEPSQKDQPNQQEE 379
>ref|XP_003085292.1| PREDICTED: hypothetical protein LOC100504575 [Mus musculus].
Length = 189
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/172 (22%), Positives = 71/172 (41%)
Frame = +2
Query: 608 EDAENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDL 787
+D E E+E EE + E+ K +EE+ EE +E+EK E+
Sbjct: 11 QDKEEEEEEEEEEEEEKGEEEEEEEEEKEEEEEKEE--------------KEEEKEEKKK 56
Query: 788 IENSEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSH 967
E E E + KE + +KEK E + ++E + EE ++
Sbjct: 57 EEKEEKEEKEEEKEEKEKEEEEEKEKEEEE------------EKEEKEEKEEKEEEKEEK 104
Query: 968 PQLNRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREV 1123
+ K + ++ +E+ + +++ E+E E + + +EEE+EV
Sbjct: 105 EKEEEEEKEKEEEEEKEEKEEKGEEEKEEEKEEEEEEEKEEKEEEKEEEKEV 156
>ref|NP_908998.1| retrotransposon-like protein 1 [Mus musculus].
Length = 1744
Score = 48.9 bits (115), Expect = 8e-06
Identities = 30/151 (19%), Positives = 68/151 (45%)
Frame = +2
Query: 671 EKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQ 850
+K + +EED EE +++ + +E+E E + E + EG + +ED +
Sbjct: 1292 DKEDDEEEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEG--EEEEDGEE 1349
Query: 851 PQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQ 1030
+ E+ + + G ++ D ++E + EE ++ + + + +E+
Sbjct: 1350 EEGEEEEDGEEEEGEEEE---DGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEE 1406
Query: 1031 DPDSPTGKDEGEKEPHEVDTLNDNQEEEREV 1123
+ + ++E E+E E + D +EE+ EV
Sbjct: 1407 EEEEEEEEEEEEEEEEEDEEEEDEEEEDEEV 1437
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,807,772
Number of extensions: 922406
Number of successful extensions: 5075
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4405
Number of HSP's successfully gapped: 14
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 466 e-131
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 456 e-129
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 466 bits (1199), Expect = e-131
Identities = 237/262 (90%), Positives = 243/262 (92%)
Frame = +2
Query: 437 MKTLLFLLYILGTAAAVPTQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 616
MKTLLFLLYILGTAAAVPTQARFPS HSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA
Sbjct: 1 MKTLLFLLYILGTAAAVPTQARFPSDHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDA 60
Query: 617 ENEKEPAVSLEEHPHHKAEKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIEN 796
E EKEPAVSLEEHP+HKAEKSSVLKSK+EDHEESADQDQSYSQNLGSQE EKSERDLIEN
Sbjct: 61 EKEKEPAVSLEEHPYHKAEKSSVLKSKQEDHEESADQDQSYSQNLGSQEHEKSERDLIEN 120
Query: 797 SEYMPTEGTLDLKEDMTQPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQL 976
SEYMPTEGTLDLKEDMT+PQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQL
Sbjct: 121 SEYMPTEGTLDLKEDMTEPQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQL 180
Query: 977 NRSSKHSPDLSDRGNQEQDPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXXXXXXX 1156
N SSKHSPDLSDRGNQ QDPDSPTG++EGEKEPHEVDTL DNQEEEREVL
Sbjct: 181 NGSSKHSPDLSDRGNQGQDPDSPTGEEEGEKEPHEVDTLFDNQEEEREVLQEQSNSEQEE 240
Query: 1157 XXTRSDDILEESYQPTQAXQMQ 1222
TRSDDILEESYQPTQA +MQ
Sbjct: 241 DSTRSDDILEESYQPTQASKMQ 262
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 456 bits (1174), Expect = e-129
Identities = 230/244 (94%), Positives = 231/244 (94%)
Frame = +2
Query: 491 TQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDAENEKEPAVSLEEHPHHKA 670
TQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDAENEKEPAVSLEEHPHHKA
Sbjct: 62 TQARFPSGHSNPTAASLSSFQQAETLVTAEQTATPTGRVEDAENEKEPAVSLEEHPHHKA 121
Query: 671 EKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQ 850
EKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQ
Sbjct: 122 EKSSVLKSKEEDHEESADQDQSYSQNLGSQEQEKSERDLIENSEYMPTEGTLDLKEDMTQ 181
Query: 851 PQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQ 1030
PQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQ
Sbjct: 182 PQKEKFPESIDSLGHDDSSIVDSNQQESITKAEENQDSHPQLNRSSKHSPDLSDRGNQEQ 241
Query: 1031 DPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLXXXXXXXXXXXXTRSDDILEESYQPTQA 1210
DPDSPTGKDEGEKEPHEVDTLNDNQEEEREVL TRSDDILEESYQPTQA
Sbjct: 242 DPDSPTGKDEGEKEPHEVDTLNDNQEEEREVLQEQSNSEQEEDSTRSDDILEESYQPTQA 301
Query: 1211 XQMQ 1222
+MQ
Sbjct: 302 SKMQ 305
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,979,633
Number of extensions: 676527
Number of successful extensions: 3205
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3010
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002414
(1224 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1072 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 1072 bits (541), Expect = 0.0
Identities = 543/544 (99%)
Strand = Plus / Plus
Query: 666 aggctgaaaaatcttcagtactaaagtcaaaggaggaagaccatgaagagtcagcagacc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628458 aggctgaaaaatcttcagtactaaagtcaaaggaggaagaccatgaagagtcagcagacc 140628517
Query: 726 aggaccagagttacagccaaaacctgggatcacaggagcaagagaaaagtgaaagagact 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628518 aggaccagagttacagccaaaacctgggatcacaggagcaagagaaaagtgaaagagact 140628577
Query: 786 taattgagaactccgagtatatgccaactgaaggtacattggacctaaaagaagatatga 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628578 taattgagaactccgagtatatgccaactgaaggtacattggacctaaaagaagatatga 140628637
Query: 846 ctcaacctcaaaaggaaaaattcccagagagcattgattcccttggtcatgatgacagtt 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628638 ctcaacctcaaaaggaaaaattcccagagagcattgattcccttggtcatgatgacagtt 140628697
Query: 906 ccattgtagattctaaccaacaagaaagtatcacaaaagcagaggaaaaccaagactcac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628698 ccattgtagattctaaccaacaagaaagtatcacaaaagcagaggaaaaccaagactcac 140628757
Query: 966 atcctcaactgaacaggagcagtaaacatagcccagatctaagtgaccgaggaaaccaag 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628758 atcctcaactgaacaggagcagtaaacatagcccagatctaagtgaccgaggaaaccaag 140628817
Query: 1026 agcaggatccagatagtccaactggaaaagacgaaggggaaaaagagccacatgaagttg 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628818 agcaggatccagatagtccaactggaaaagacgaaggggaaaaagagccacatgaagttg 140628877
Query: 1086 ataccctcaatgacaaccaagaagaggagagagaagtgctccaggagcagtctaacagcg 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628878 ataccctcaatgacaaccaagaagaggagagagaagtgctccaggagcagtctaacagcg 140628937
Query: 1146 agcaggaagaagacagtacccgatcagatgacatcttggaagagtcttaccaaccnactc 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 140628938 agcaggaagaagacagtacccgatcagatgacatcttggaagagtcttaccaaccaactc 140628997
Query: 1206 aagc 1209
||||
Sbjct: 140628998 aagc 140629001
Score = 842 bits (425), Expect = 0.0
Identities = 425/425 (100%)
Strand = Plus / Plus
Query: 3 tataagcctctgagaacaagcgcctgagaagaggactgttaaccccattctctcgggcag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599491 tataagcctctgagaacaagcgcctgagaagaggactgttaaccccattctctcgggcag 140599550
Query: 63 aaggagctctttccctgtgggtctgcacagcctggaaagctcatcacgccctcgcctcgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599551 aaggagctctttccctgtgggtctgcacagcctggaaagctcatcacgccctcgcctcgg 140599610
Query: 123 agtaagaggctagcccgctggagaactgcaggaatctgcaacaaaaacgatgacagcctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599611 agtaagaggctagcccgctggagaactgcaggaatctgcaacaaaaacgatgacagcctg 140599670
Query: 183 aaatacgtcccagtgccaacctccaaattcatctgtcacctcagaccctgactagttgac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599671 aaatacgtcccagtgccaacctccaaattcatctgtcacctcagaccctgactagttgac 140599730
Query: 243 agagcagcagaatttcaactccaatagacctgaatgtgtttctgggcaaagaagcagagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599731 agagcagcagaatttcaactccaatagacctgaatgtgtttctgggcaaagaagcagagc 140599790
Query: 303 taacgaggaaagagatatatagagtattgggtatttgtcaaacttttattttctggctgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599791 taacgaggaaagagatatatagagtattgggtatttgtcaaacttttattttctggctgt 140599850
Query: 363 gtgcaaagagaagattcaacttcaaattcctgccaaggctctgggtccagccacctacct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140599851 gtgcaaagagaagattcaacttcaaattcctgccaaggctctgggtccagccacctacct 140599910
Query: 423 gaagg 427
|||||
Sbjct: 140599911 gaagg 140599915
Score = 355 bits (179), Expect = 4e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 490 gacacaagccaggttcccatctggtcattccaacccaactgctgcttccttaagttcctt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140627895 gacacaagccaggttcccatctggtcattccaacccaactgctgcttccttaagttcctt 140627954
Query: 550 ccagcaggctgaaacgttggtaacagcggagcagactgcaacccccactggaagggttga 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140627955 ccagcaggctgaaacgttggtaacagcggagcagactgcaacccccactggaagggttga 140628014
Query: 610 agatgcagaaaatgaaaaggaaccagcagtgtccctagaagagcatccccatcataagg 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140628015 agatgcagaaaatgaaaaggaaccagcagtgtccctagaagagcatccccatcataagg 140628073
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 425 agggctagaaagatgaagactctgctttttctcctgtacattttgggaacggcagctgca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140624177 agggctagaaagatgaagactctgctttttctcctgtacattttgggaacggcagctgca 140624236
Query: 485 gtcccg 490
||||||
Sbjct: 140624237 gtcccg 140624242
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,884,905
Number of extensions: 366
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 4
Length of query: 1224
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1203
Effective length of database: 2,808,413,156
Effective search space: 3378521026668
Effective search space used: 3378521026668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)