Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011676.2| T-cell surface antigen CD2 [Bos taurus]. 383 e-106
Alignment gi|NP_001026929.2| hepatocyte cell adhesion molecule precursor ... 50 3e-06
>ref|NP_001011676.2| T-cell surface antigen CD2 [Bos taurus].
Length = 338
Score = 383 bits (983), Expect = e-106
Identities = 190/340 (55%), Positives = 244/340 (71%)
Frame = +3
Query: 108 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 287
M+LAC LASFLLIF V KG + + VVWG +D D+NLDIP + D V I+W +N+
Sbjct: 1 MNLACEILASFLLIFTVPTKGEDPE-SIVVWGALDHDLNLDIPGFPRSDIVADIKWNRNK 59
Query: 288 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQ 467
NKIA KK+ H D Y M NGTL+IK L R+D G+Y+V VY ++G ++L +KFDL+
Sbjct: 60 NKIARIKKDMPLHNEMDKYDMFTNGTLKIKTLMRNDSGLYEVEVYDSNGVNLLSKKFDLK 119
Query: 468 ILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 647
I + +S P I+W C N+TV+C+V GS+PKL+L++N + ++ K+I + WNT+W+ F
Sbjct: 120 IQEMLSGPEINWICTNRTVSCKVENGSNPKLQLFLNTTRVKQDHGKLITYTWNTRWNKTF 179
Query: 648 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 827
CVASN+ +++S C +GLD+YLIIGIC GG VFL+F+ALLIFY S+RKKQS RR
Sbjct: 180 MCVASNHVDKKVSTEIAVCPDEGLDLYLIIGICVGGAVFLLFVALLIFYISRRKKQSRRR 239
Query: 828 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXVQ 1007
+DEELEI+A+RA EERGRKP P STP NP +SQTPP+PGHRSQ VQ
Sbjct: 240 DDEELEIKAQRAILEERGRKPQQTPVSTPANPGMSQTPPVPGHRSQPPAHRPRALGPRVQ 299
Query: 1008 HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEGKENS 1127
PQ+KR PPTPGTQVHQQKGPPLPKPRVQTKP + +ENS
Sbjct: 300 -PQQKRLPPTPGTQVHQQKGPPLPKPRVQTKPPCDAEENS 338
>ref|NP_001026929.2| hepatocyte cell adhesion molecule precursor [Bos taurus].
Length = 418
Score = 50.4 bits (119), Expect = 3e-06
Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 26/277 (9%)
Frame = +3
Query: 87 RGKLAPKMSLACTTLASFLLIFIVSNKG----TVSQITEVVWGIVDQDINLDIPELSKHD 254
R + AP + + LA F+ + ++ + ++ ++ G V + L + S
Sbjct: 3 REREAPSRAFSALRLAPFVYLLLIQTEPLEGVNITSPVRLIHGTVGKAALLSVQYSSTSS 62
Query: 255 NVDHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKV 413
+ ++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V
Sbjct: 63 DKPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEV 122
Query: 414 TVYATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDPKLK-LY 569
+ TD E+ +L + +S+P + + T+ C G+ P L
Sbjct: 123 EISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLK 182
Query: 570 VNKSTAREGR------QKVI-LWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIY 728
K + R QKV+ + + + L+ CV N S+ S + +Y
Sbjct: 183 DGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCVVENPISQGRSPPVKITVYRRSSLY 242
Query: 729 LIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRNDEE 839
+I+ G +FL+ + + K K+S ++ E
Sbjct: 243 IILST---GGIFLLVTLVTVCACWKPSKKSGKKRKLE 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,038,858
Number of extensions: 1420484
Number of successful extensions: 8804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8321
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 333
Effective length of database: 14,207,134
Effective search space: 4730975622
Effective search space used: 4730975622
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849219.1| PREDICTED: similar to T-cell surface antigen CD... 341 8e-94
Alignment gi|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion ... 51 3e-06
>ref|XP_849219.1| PREDICTED: similar to T-cell surface antigen CD2 precursor (T-cell
surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor)
(Erythrocyte receptor) (Rosette receptor) [Canis
familiaris].
Length = 339
Score = 341 bits (875), Expect = 8e-94
Identities = 170/343 (49%), Positives = 223/343 (65%), Gaps = 3/343 (0%)
Frame = +3
Query: 108 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 287
M+LAC LASFLLIF+ KG V + T++VWG + D +LD + +DHIRW+K +
Sbjct: 1 MNLACQILASFLLIFVFYIKGEVLE-TKLVWGALGHDFDLDSAGFQMNAKIDHIRWEKGK 59
Query: 288 NKIAEFKKN--KETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFD 461
K+AE K K+TH Y + NG L+IK L +D IYKV +Y DGK +L R +
Sbjct: 60 TKVAELKTGILKDTH---GKYNISTNGFLKIKHLMMNDSDIYKVAIYDKDGKSVLRRNYQ 116
Query: 462 LQILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREG-RQKVILWKWNTKWS 638
L+I + VS P I WSC N+++TCE+ G+DP L LYVN++ + ++ W W ++
Sbjct: 117 LKIQEKVSTPKILWSCGNQSLTCEITSGTDPTLMLYVNQTMIKNLLNMTIVQWNWTSQQE 176
Query: 639 TLFKCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQS 818
C A N S++ I+C+ +GLDIYLI+GICGGGT+F+IF+ LLIFY +KRKKQ+
Sbjct: 177 MTVSCTAKNEVSQKREEKIINCSEKGLDIYLIVGICGGGTIFIIFMTLLIFYINKRKKQN 236
Query: 819 SRRNDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXX 998
SRRNDEEL RA R + +E+GRKP FPGSTP NP +SQ PP P HR+QA
Sbjct: 237 SRRNDEELGPRAHRVTTKEKGRKPRQFPGSTPPNPAVSQPPPPPSHRAQAPCHRPPPPSH 296
Query: 999 XVQHPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEGKENS 1127
VQH Q+K+PP TQVHQQKGPPLP+PRVQ KP H E+S
Sbjct: 297 RVQHHQQKKPPAPSATQVHQQKGPPLPRPRVQPKPPHGATESS 339
>ref|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion molecule [Canis
familiaris].
Length = 418
Score = 50.8 bits (120), Expect = 3e-06
Identities = 52/277 (18%), Positives = 111/277 (40%), Gaps = 26/277 (9%)
Frame = +3
Query: 87 RGKLAPKMSLACTTLASFLLIFIVSNKG----TVSQITEVVWGIVDQDINLDIPELSKHD 254
R + AP + + +LA F+ + ++ + ++ ++ G V + L + S
Sbjct: 3 RERGAPSRAFSALSLAPFVYLLLIQTEPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSS 62
Query: 255 NVDHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKV 413
+ ++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V
Sbjct: 63 DKPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEV 122
Query: 414 TVYATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDP------ 554
+ TD E+ +L + +S+P + + T+ C G+ P
Sbjct: 123 EISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLK 182
Query: 555 --KLKLYVNKSTAREGRQKVILWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIY 728
K L ++ + + + + + L+ CV N S+ S+ + +Y
Sbjct: 183 DGKPLLNDSRMLLSPDHKVLTITRVLMEDDDLYSCVVENPISQGRSLPIKITVYRRSSLY 242
Query: 729 LIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRNDEE 839
+I+ G +FL+ + + K K+S ++ E
Sbjct: 243 IILST---GGIFLLVTLVTVCACWKPSKKSGKKRKLE 276
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,218,058
Number of extensions: 1461572
Number of successful extensions: 9219
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8830
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 332
Effective length of database: 15,340,888
Effective search space: 5093174816
Effective search space used: 5093174816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001758.2| T-cell surface antigen CD2 precursor [Homo sapi... 388 e-108
>ref|NP_001758.2| T-cell surface antigen CD2 precursor [Homo sapiens].
Length = 351
Score = 388 bits (996), Expect = e-108
Identities = 198/346 (57%), Positives = 243/346 (70%), Gaps = 6/346 (1%)
Frame = +3
Query: 108 MSLACTTLASFLLIFIVSNKGTVS-QITEVV--WGIVDQDINLDIPELSKHDNVDHIRWQ 278
MS C +ASFLLIF VS+KG VS +IT + WG + QDINLDIP D++D I+W+
Sbjct: 1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE 60
Query: 279 K--NENKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLER 452
K ++ KIA+F+K KET KDTY + NGTL+IK LK DD+ IYKV++Y T GK++LE+
Sbjct: 61 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 120
Query: 453 KFDLQILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTK 632
FDL+I + VSKP ISW+C N T+TCEV G+DP+L LY + + Q+VI KW T
Sbjct: 121 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS-QRVITHKWTTS 179
Query: 633 WSTLFKCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKK 812
S FKC A N S++ S+ +SC +GLDIYLIIGICGGG++ ++F+ALL+FY +KRKK
Sbjct: 180 LSAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKK 239
Query: 813 QSSRRNDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQ-TPPMPGHRSQAXXXXXXX 989
Q SRRNDEELE RA R + EERGRKPH P STPQNP SQ PP PGHRSQA
Sbjct: 240 QRSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPP 299
Query: 990 XXXXVQHPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEGKENS 1127
VQH +KRPP GTQVHQQKGPPLP+PRVQ KP H ENS
Sbjct: 300 PGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENS 345
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,296,435
Number of extensions: 1446546
Number of successful extensions: 9015
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8552
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 332
Effective length of database: 14,802,980
Effective search space: 4914589360
Effective search space used: 4914589360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038514.1| T-cell surface antigen CD2 precursor [Mus muscu... 286 2e-77
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 55 9e-08
Alignment gi|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mu... 50 3e-06
>ref|NP_038514.1| T-cell surface antigen CD2 precursor [Mus musculus].
Length = 344
Score = 286 bits (733), Expect = 2e-77
Identities = 144/332 (43%), Positives = 202/332 (60%), Gaps = 2/332 (0%)
Frame = +3
Query: 114 LACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENK 293
+ C L SF L+F +S KG + E +WG++ I L+IP D++D +RW +
Sbjct: 1 MKCKFLGSFFLLFSLSGKGADCRDNETIWGVLGHGITLNIPNFQMTDDIDEVRWVRRGTL 60
Query: 294 IAEFKKNKETHPVKDTYMMLPNGTLRIKD-LKRDDEGIYKVTVYATDGKHMLERKFDLQI 470
+AEFK+ K + +TY +L NG+L+IK + R+D G Y V VY T+G LE+ D++I
Sbjct: 61 VAEFKRKKPPFLISETYEVLANGSLKIKKPMMRNDSGTYNVMVYGTNGMTRLEKDLDVRI 120
Query: 471 LDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLFK 650
L+ VSKP+I W C N T+TC V +G+D +LKLY ++ QK + ++W T + FK
Sbjct: 121 LERVSKPMIHWECPNTTLTCAVLQGTDFELKLYQGETLLNSLPQKNMSYQW-TNLNAPFK 179
Query: 651 CVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRN 830
C A N S++ M ++C +GL Y+ +G+ GG + ++ +AL IF KR+K++ RR
Sbjct: 180 CEAINPVSKESKMEVVNCPEKGLSFYVTVGVGAGGLLLVLLVALFIFCICKRRKRNRRRK 239
Query: 831 DEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXV-Q 1007
DEELEI+A R S ERG KPH P + QN V Q PP PGH Q +
Sbjct: 240 DEELEIKASRTSTVERGPKPHSTPAAAAQNSVALQAPPPPGHHLQTPGHRPLPPGHRTRE 299
Query: 1008 HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKP 1103
H QKKRPPP+ GTQ+HQQKGPPLP+PRVQ KP
Sbjct: 300 HQQKKRPPPS-GTQIHQQKGPPLPRPRVQPKP 330
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 55.5 bits (132), Expect = 9e-08
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 21/250 (8%)
Frame = +3
Query: 153 IVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENKIAEFKKNKETHPV 332
+ + GT+ ++ + G V L+I E+ VD++ W N +A KK+ T
Sbjct: 19 VTAASGTLKKVAGALDGSVT--FTLNITEIK----VDYVVWTFNTFFLAMVKKDGVTSQS 72
Query: 333 KDTY-MMLPNG--TLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQILDGVSKPVISW 503
+ ++ P+G ++++ LK++D G Y+ +Y+T + L +++ L + +S+P ++
Sbjct: 73 SNKERIVFPDGLYSMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLHVYKHLSRPKVTI 132
Query: 504 S-CANKTVTCEV----AEGSDPKLKLYVNKSTAR------EGRQKVILWKWNTKWSTLFK 650
+NK TC + + D + Y K+ + +G I W+ K L
Sbjct: 133 DRQSNKNGTCVINLTCSTDQDGENVTYSWKAVGQGDNQFHDGATLSIAWRSGEKDQAL-T 191
Query: 651 CVASNNASEQISMVTIS---CTGQGLDIYLIIGI----CGGGTVFLIFIALLIFYTSKRK 809
C+A N S S C D+ + GI C + L + L IF+T K
Sbjct: 192 CMARNPVSNSFSTPVFPQKLCEDAATDLTSLRGILYILCFSAVLILFAVLLTIFHTMWIK 251
Query: 810 KQSSRRNDEE 839
K D++
Sbjct: 252 KGKGCEEDKK 261
>ref|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mus musculus].
Length = 418
Score = 50.4 bits (119), Expect = 3e-06
Identities = 74/349 (21%), Positives = 136/349 (38%), Gaps = 60/349 (17%)
Frame = +3
Query: 87 RGKLA-PKMSLACTTLASFLLIFIVSNKGT-VSQITEVVWGIVDQDINLDIPELSKHDNV 260
RG L+ +L + LLI V +G ++ ++ G V + L + S +
Sbjct: 5 RGALSRASRALRLSPFVYLLLIQPVPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDK 64
Query: 261 DHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKVTV 419
++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V +
Sbjct: 65 PVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEI 124
Query: 420 YATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDPKLK-LYVN 575
TD E+ +L + +S+P + + T+ C G+ P L
Sbjct: 125 SITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDG 184
Query: 576 KSTAREGR------QKVI-LWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIYLI 734
K + R QKV+ + + + L+ CV N S+ S+ + +Y+I
Sbjct: 185 KPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCVVENPISQVRSLPVKITVYRRSSLYII 244
Query: 735 IGICGGGTVFLIFIALLIFYTSKRKKQSSRR--------------NDEELEIRA---KRA 863
+ G +FL+ + + K K+S ++ ND+ L+ A R+
Sbjct: 245 LST---GGIFLLVTLVTVCACWKPSKKSRKKRKLEKQNSLEYMDQNDDRLKSEADTLPRS 301
Query: 864 SPEER-------------GRKPHPFPGSTPQN------PVISQTPPMPG 953
+ER +P P + P++ P S +PP+PG
Sbjct: 302 GEQERKNPMALYILKDKDSSEPDENPATEPRSTTEPGPPGYSVSPPVPG 350
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,514,459
Number of extensions: 1212948
Number of successful extensions: 7453
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7021
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 334
Effective length of database: 12,493,815
Effective search space: 4172934210
Effective search space used: 4172934210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998941.1| T-cell surface antigen CD2 [Sus scrofa]. 666 0.0
>ref|NP_998941.1| T-cell surface antigen CD2 [Sus scrofa].
Length = 340
Score = 666 bits (1718), Expect = 0.0
Identities = 326/340 (95%), Positives = 327/340 (96%)
Frame = +3
Query: 108 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 287
MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE
Sbjct: 1 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 60
Query: 288 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQ 467
NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDL
Sbjct: 61 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLP 120
Query: 468 ILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 647
ILDGVSKPVISWSCA+KTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF
Sbjct: 121 ILDGVSKPVISWSCADKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 180
Query: 648 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 827
KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR
Sbjct: 181 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 240
Query: 828 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXVQ 1007
NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQA VQ
Sbjct: 241 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAPTPRPGPPGPRVQ 300
Query: 1008 HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEGKENS 1127
HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHE KENS
Sbjct: 301 HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEAKENS 340
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,228,744
Number of extensions: 908831
Number of successful extensions: 5437
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5178
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,804,438
Effective search space: 2958291168
Effective search space used: 2958291168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002416
(1316 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 801 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 801 bits (404), Expect = 0.0
Identities = 475/491 (96%), Gaps = 7/491 (1%)
Strand = Plus / Minus
Query: 831 gatgaggagctggagataagagcgaagagagcgagccccgaggaaaggggccggaagccc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928822 gatgaggagctggagataagagcgaagagagcgagccccgaggaaaggggccggaagccc 113928763
Query: 891 catccatttccaggctcaactcctcaaaatccggtcatttcccaaactcctccaatgcct 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928762 catccatttccaggctcaactcctcaaaatccggtcatttcccaaactcctccaatgcct 113928703
Query: 951 ggtcatcgttctcaggcacctactcctcgtcccgggcctcctggcccccgtgtccagcac 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928702 ggtcatcgttctcaggcacctactcctcgtcccgggcctcctggcccccgtgtccagcac 113928643
Query: 1011 ccacagaagaagaggcctcctcctaccccgggcacacaagttcaccagcaaaaaggccct 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928642 ccacagaagaagaggcctcctcctaccccgggcacacaagttcaccagcaaaaaggccct 113928583
Query: 1071 cccctccccaagcctcgagttcaaacaaaacctacccatgagggcaaagaaaactcataa 1130
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 113928582 cccctccccaagcctcgagttcaaacaaaacctacccatgaggccaaagaaaactcataa 113928523
Query: 1131 ctctgtctcctgatgcgggtgtcccttcccctct-antaaaagagaacagaaactgtcct 1189
|||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||
Sbjct: 113928522 ctctgtctcctgatgcggttgtccctt-ccctctaattaaaagagaacagaaactgtcct 113928464
Query: 1190 ttccctgt-aaangcactgtggagtttctccact-caggcgcgcatgctagccgctt-ca 1246
|| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 113928463 tt-cctgtaaaaggcactgtggagtttctccactccaggcgcgcatgctagccgcttcca 113928405
Query: 1247 tcaagcgtgctctgcaggnngaccgggacagcgccccagcctagnagccac-gccctgtc 1305
|||||||||||||||||| |||||||||||||||| |||| || |||||| ||||||||
Sbjct: 113928404 tcaagcgtgctctgcagggggaccgggacagcgcccaagcccaggagccacagccctgtc 113928345
Query: 1306 tgtaccatcta 1316
|||||||||||
Sbjct: 113928344 tgtaccatcta 113928334
Score = 563 bits (284), Expect = e-158
Identities = 300/308 (97%)
Strand = Plus / Minus
Query: 167 aggtacagtctctcaaattactgaggttgtctggggcatcgtggatcaagacatcaacct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941506 aggtacagtctctcaaattactgaggttgtctggggcatcgtggatcaagacatcaacct 113941447
Query: 227 ggacattcctgaactttcaaaacatgataacgtagatcatatacgatggcagaagaatga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941446 ggacattcctgaactttcaaaacatgataacgtagatcatatacgatggcagaagaatga 113941387
Query: 287 aaacaagatcgcagaatttnnnnnnnncaaagaaactcaccctgtgaaagacacatacat 346
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113941386 aaacaagatcgcagaatttaaaaaaaacaaagaaactcaccctgtgaaagacacatacat 113941327
Query: 347 gatgttaccaaatggaactctgagaattaaagatctgaagagagatgatgagggtatcta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941326 gatgttaccaaatggaactctgagaattaaagatctgaagagagatgatgagggtatcta 113941267
Query: 407 caaggtaactgtctatgctacggatggaaaacacatgctggagagaaaatttgatttgca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941266 caaggtaactgtctatgctacggatggaaaacacatgctggagagaaaatttgatttgca 113941207
Query: 467 gattctag 474
||||||||
Sbjct: 113941206 gattctag 113941199
Score = 462 bits (233), Expect = e-127
Identities = 236/237 (99%)
Strand = Plus / Minus
Query: 473 agatggggtctcaaaacctgtaatctcctggagctgtgccaacaaaacggtgacctgtga 532
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113937127 agatggggtctcaaaacctgtaatctcatggagctgtgccaacaaaacggtgacctgtga 113937068
Query: 533 ggtagcagaaggaagtgaccctaagttaaaactgtatgtaaataagtccactgccagaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113937067 ggtagcagaaggaagtgaccctaagttaaaactgtatgtaaataagtccactgccagaga 113937008
Query: 593 aggtcgtcagaaggtcatcctgtggaagtggaacaccaaatggagcacattattcaagtg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113937007 aggtcgtcagaaggtcatcctgtggaagtggaacaccaaatggagcacattattcaagtg 113936948
Query: 653 tgtggccagtaacaacgccagtgagcaaatcagcatggtgaccatcagttgtacggg 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113936947 tgtggccagtaacaacgccagtgagcaaatcagcatggtgaccatcagttgtacggg 113936891
Score = 331 bits (167), Expect = 6e-88
Identities = 170/171 (99%)
Strand = Plus / Minus
Query: 1 gaaggaggcacgtggttaagctcgcaggaggtggattccatgggtgttaatttcagttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941806 gaaggaggcacgtggttaagctcgcaggaggtggattccatgggtgttaatttcagttcc 113941747
Query: 61 ttttgtaagaagagctcagaatcacaagagggaaacttgccccaaagatgagcctcgcat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941746 tttcgtaagaagagctcagaatcacaagagggaaacttgccccaaagatgagcctcgcat 113941687
Query: 121 gtacaaccttggccagcttcctcctgattttcattgtttccaacaaaggta 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941686 gtacaaccttggccagcttcctcctgattttcattgtttccaacaaaggta 113941636
Score = 238 bits (120), Expect = 6e-60
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 708 gggcaaggtctggatatctatctcatcatcggcatctgcggaggaggcaccgtattcctc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113932974 gggcaaggtctggatatctatctcatcatcggcatctgcggaggaggcaccgtattcctc 113932915
Query: 768 atcttcatagcactactcatattctacaccagcaagaggaaaaagcagagcagcaggaga 827
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113932914 atcttcatagcactactcatattctactccagcaagaggaaaaagcagagcagcaggaga 113932855
Query: 828 aatg 831
||||
Sbjct: 113932854 aatg 113932851
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,152,083
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 6
Length of query: 1316
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1295
Effective length of database: 2,808,413,156
Effective search space: 3636895037020
Effective search space used: 3636895037020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)