Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011676.2| T-cell surface antigen CD2 [Bos taurus]. 370 e-102
Alignment gi|NP_001026929.2| hepatocyte cell adhesion molecule precursor ... 50 3e-06
>ref|NP_001011676.2| T-cell surface antigen CD2 [Bos taurus].
Length = 338
Score = 370 bits (949), Expect = e-102
Identities = 185/340 (54%), Positives = 239/340 (70%)
Frame = +3
Query: 57 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 236
M+LAC LASFLLIF V KG + + VVWG +D D+NLDIP + D V I+W +N+
Sbjct: 1 MNLACEILASFLLIFTVPTKGEDPE-SIVVWGALDHDLNLDIPGFPRSDIVADIKWNRNK 59
Query: 237 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQ 416
NKIA KK+ H D Y M NGTL+IK L R+D G+Y+V VY ++G ++L +KFDL+
Sbjct: 60 NKIARIKKDMPLHNEMDKYDMFTNGTLKIKTLMRNDSGLYEVEVYDSNGVNLLSKKFDLK 119
Query: 417 ILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 596
I + +S P I+W C N+TV+C+V GS+PKL+L++N + ++ K+I + WNT+W+ F
Sbjct: 120 IQEMLSGPEINWICTNRTVSCKVENGSNPKLQLFLNTTRVKQDHGKLITYTWNTRWNKTF 179
Query: 597 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 776
CVASN+ +++S C +GLD+YLIIGIC GG VFL+F+ALLIFY S+RKKQS RR
Sbjct: 180 MCVASNHVDKKVSTEIAVCPDEGLDLYLIIGICVGGAVFLLFVALLIFYISRRKKQSRRR 239
Query: 777 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXVQ 956
+DEELEI+A+RA EERGRKP P STP NP +SQTPP+PGHRSQ VQ
Sbjct: 240 DDEELEIKAQRAILEERGRKPQQTPVSTPANPGMSQTPPVPGHRSQPPAHRPRALGPRVQ 299
Query: 957 HPQKKRPPPTPGTQVHQQKGLPLPQPPVSTKPTHXXQRNS 1076
PQ+KR PPTPGTQVHQQKG PLP+P V TKP + NS
Sbjct: 300 -PQQKRLPPTPGTQVHQQKGPPLPKPRVQTKPPCDAEENS 338
>ref|NP_001026929.2| hepatocyte cell adhesion molecule precursor [Bos taurus].
Length = 418
Score = 50.4 bits (119), Expect = 3e-06
Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 26/277 (9%)
Frame = +3
Query: 36 RGKLAPKMSLACTTLASFLLIFIVSNKG----TVSQITEVVWGIVDQDINLDIPELSKHD 203
R + AP + + LA F+ + ++ + ++ ++ G V + L + S
Sbjct: 3 REREAPSRAFSALRLAPFVYLLLIQTEPLEGVNITSPVRLIHGTVGKAALLSVQYSSTSS 62
Query: 204 NVDHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKV 362
+ ++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V
Sbjct: 63 DKPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEV 122
Query: 363 TVYATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDPKLK-LY 518
+ TD E+ +L + +S+P + + T+ C G+ P L
Sbjct: 123 EISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLK 182
Query: 519 VNKSTAREGR------QKVI-LWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIY 677
K + R QKV+ + + + L+ CV N S+ S + +Y
Sbjct: 183 DGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCVVENPISQGRSPPVKITVYRRSSLY 242
Query: 678 LIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRNDEE 788
+I+ G +FL+ + + K K+S ++ E
Sbjct: 243 IILST---GGIFLLVTLVTVCACWKPSKKSGKKRKLE 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,741,874
Number of extensions: 1076130
Number of successful extensions: 5941
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5721
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849219.1| PREDICTED: similar to T-cell surface antigen CD... 330 1e-90
Alignment gi|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion ... 51 2e-06
Alignment gi|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Can... 49 9e-06
>ref|XP_849219.1| PREDICTED: similar to T-cell surface antigen CD2 precursor (T-cell
surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor)
(Erythrocyte receptor) (Rosette receptor) [Canis
familiaris].
Length = 339
Score = 330 bits (847), Expect = 1e-90
Identities = 166/343 (48%), Positives = 219/343 (63%), Gaps = 3/343 (0%)
Frame = +3
Query: 57 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 236
M+LAC LASFLLIF+ KG V + T++VWG + D +LD + +DHIRW+K +
Sbjct: 1 MNLACQILASFLLIFVFYIKGEVLE-TKLVWGALGHDFDLDSAGFQMNAKIDHIRWEKGK 59
Query: 237 NKIAEFKKN--KETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFD 410
K+AE K K+TH Y + NG L+IK L +D IYKV +Y DGK +L R +
Sbjct: 60 TKVAELKTGILKDTH---GKYNISTNGFLKIKHLMMNDSDIYKVAIYDKDGKSVLRRNYQ 116
Query: 411 LQILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREG-RQKVILWKWNTKWS 587
L+I + VS P I WSC N+++TCE+ G+DP L LYVN++ + ++ W W ++
Sbjct: 117 LKIQEKVSTPKILWSCGNQSLTCEITSGTDPTLMLYVNQTMIKNLLNMTIVQWNWTSQQE 176
Query: 588 TLFKCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQS 767
C A N S++ I+C+ +GLDIYLI+GICGGGT+F+IF+ LLIFY +KRKKQ+
Sbjct: 177 MTVSCTAKNEVSQKREEKIINCSEKGLDIYLIVGICGGGTIFIIFMTLLIFYINKRKKQN 236
Query: 768 SRRNDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXX 947
SRRNDEEL RA R + +E+GRKP FPGSTP NP +SQ PP P HR+QA
Sbjct: 237 SRRNDEELGPRAHRVTTKEKGRKPRQFPGSTPPNPAVSQPPPPPSHRAQAPCHRPPPPSH 296
Query: 948 XVQHPQKKRPPPTPGTQVHQQKGLPLPQPPVSTKPTHXXQRNS 1076
VQH Q+K+PP TQVHQQKG PLP+P V KP H +S
Sbjct: 297 RVQHHQQKKPPAPSATQVHQQKGPPLPRPRVQPKPPHGATESS 339
>ref|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion molecule [Canis
familiaris].
Length = 418
Score = 50.8 bits (120), Expect = 2e-06
Identities = 52/277 (18%), Positives = 111/277 (40%), Gaps = 26/277 (9%)
Frame = +3
Query: 36 RGKLAPKMSLACTTLASFLLIFIVSNKG----TVSQITEVVWGIVDQDINLDIPELSKHD 203
R + AP + + +LA F+ + ++ + ++ ++ G V + L + S
Sbjct: 3 RERGAPSRAFSALSLAPFVYLLLIQTEPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSS 62
Query: 204 NVDHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKV 362
+ ++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V
Sbjct: 63 DKPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEV 122
Query: 363 TVYATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDP------ 503
+ TD E+ +L + +S+P + + T+ C G+ P
Sbjct: 123 EISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLK 182
Query: 504 --KLKLYVNKSTAREGRQKVILWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIY 677
K L ++ + + + + + L+ CV N S+ S+ + +Y
Sbjct: 183 DGKPLLNDSRMLLSPDHKVLTITRVLMEDDDLYSCVVENPISQGRSLPIKITVYRRSSLY 242
Query: 678 LIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRNDEE 788
+I+ G +FL+ + + K K+S ++ E
Sbjct: 243 IILST---GGIFLLVTLVTVCACWKPSKKSGKKRKLE 276
>ref|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Canis familiaris].
Length = 810
Score = 48.9 bits (115), Expect = 9e-06
Identities = 73/344 (21%), Positives = 124/344 (36%), Gaps = 32/344 (9%)
Frame = +3
Query: 87 FLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENKIAEFKKNK 266
F L+F ++ T + E+V D ++ P +D I W N + +
Sbjct: 11 FFLLFQLTGPVTSGALKELVG---DLGGSVTFPLTLPGIQIDSIVWTFNTTPLITIQPRT 67
Query: 267 ----------ETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQ 416
+H K + N +L++ L + D G Y V +Y++ K +++ L+
Sbjct: 68 PDRQANVIVTHSHNKKRVDFLHGNYSLKLSKLNKSDSGDYYVVIYSSSFKEPFSQRYGLR 127
Query: 417 ILDGVSKPVISWSCANK-------TVTCEVAEGSD------PKLKLYVNKSTAREGRQKV 557
+ + +SKP ++ NK +TC V +G + L NKS G
Sbjct: 128 VYEHLSKPKVTMGLQNKENGTCVTNLTCFVDQGGEDVTYSWESLGQAANKS--YNGSILP 185
Query: 558 ILWKWNTKWSTLFKCVASNNASEQISMVTIS---CTGQGLD------IYLIIGICGGGTV 710
I W+ K F CVA N S S + C G D +Y + + T
Sbjct: 186 ISWRLG-KGGMTFICVARNPISSNSSNPVFAWKLCEGAADDSESSVVLYFLGALLFMLTA 244
Query: 711 FLIFIALLIFYTSKRKKQSSRRNDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTP 890
F + + ++F +R+K+S K + +P G TP IS
Sbjct: 245 FTL-VPFILFMRRERRKESIEEK--------KGMDTHQEILNYYPPSGETPVYDTISCVN 295
Query: 891 PMPGHRSQAXXXXXXXXXXXVQHPQKKRPPPTPGTQVHQQKGLP 1022
+ ++A +Q P +K G Q +G P
Sbjct: 296 VLSRKVTRA-----TGDRRDIQKPAEKSEDAACGNQAPAARGAP 334
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,555,111
Number of extensions: 1109952
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6148
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001758.2| T-cell surface antigen CD2 precursor [Homo sapi... 377 e-104
Alignment gi|NP_689935.2| hepatocyte cell adhesion molecule precursor [Ho... 50 3e-06
>ref|NP_001758.2| T-cell surface antigen CD2 precursor [Homo sapiens].
Length = 351
Score = 377 bits (968), Expect = e-104
Identities = 194/346 (56%), Positives = 239/346 (69%), Gaps = 6/346 (1%)
Frame = +3
Query: 57 MSLACTTLASFLLIFIVSNKGTVS-QITEVV--WGIVDQDINLDIPELSKHDNVDHIRWQ 227
MS C +ASFLLIF VS+KG VS +IT + WG + QDINLDIP D++D I+W+
Sbjct: 1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE 60
Query: 228 K--NENKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLER 401
K ++ KIA+F+K KET KDTY + NGTL+IK LK DD+ IYKV++Y T GK++LE+
Sbjct: 61 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 120
Query: 402 KFDLQILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTK 581
FDL+I + VSKP ISW+C N T+TCEV G+DP+L LY + + Q+VI KW T
Sbjct: 121 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS-QRVITHKWTTS 179
Query: 582 WSTLFKCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKK 761
S FKC A N S++ S+ +SC +GLDIYLIIGICGGG++ ++F+ALL+FY +KRKK
Sbjct: 180 LSAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKK 239
Query: 762 QSSRRNDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQ-TPPMPGHRSQAXXXXXXX 938
Q SRRNDEELE RA R + EERGRKPH P STPQNP SQ PP PGHRSQA
Sbjct: 240 QRSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPP 299
Query: 939 XXXXVQHPQKKRPPPTPGTQVHQQKGLPLPQPPVSTKPTHXXQRNS 1076
VQH +KRPP GTQVHQQKG PLP+P V KP H NS
Sbjct: 300 PGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENS 345
>ref|NP_689935.2| hepatocyte cell adhesion molecule precursor [Homo sapiens].
Length = 416
Score = 50.4 bits (119), Expect = 3e-06
Identities = 69/332 (20%), Positives = 124/332 (37%), Gaps = 57/332 (17%)
Frame = +3
Query: 78 LASFLLIFIVSNKG----TVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENKI 245
LA F+ + ++ ++ ++ G V + L + S + ++WQ +K
Sbjct: 17 LAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDRPVVKWQLKRDKP 76
Query: 246 AEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERK 404
++ T + +D + NG+L + DL+ DEG Y+V + TD E+
Sbjct: 77 VTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKT 136
Query: 405 FDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDPKLK-LYVNKSTAREGR---- 548
+L + +S+P + + T+ C G+ P L K + R
Sbjct: 137 INLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLS 196
Query: 549 --QKVI-LWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLI 719
QKV+ + + + L+ C+ N S+ S+ + +Y+I+ G + +
Sbjct: 197 PDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTL 256
Query: 720 FIALLIFYTSKRK-----KQSS-------------------------RRNDEELEIRAKR 809
+ SKRK KQ+S R+N L I +
Sbjct: 257 VTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSGEQERKNPMALYILKDK 316
Query: 810 ASPE-ERGRKPHPFPGSTPQNPVISQTPPMPG 902
SPE E P P + P P S +P +PG
Sbjct: 317 DSPETEENPAPEPRSATEPGPPGYSVSPAVPG 348
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,847,443
Number of extensions: 1100993
Number of successful extensions: 6271
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6061
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038514.1| T-cell surface antigen CD2 precursor [Mus muscu... 278 7e-75
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 55 8e-08
Alignment gi|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mu... 50 2e-06
>ref|NP_038514.1| T-cell surface antigen CD2 precursor [Mus musculus].
Length = 344
Score = 278 bits (710), Expect = 7e-75
Identities = 141/332 (42%), Positives = 199/332 (59%), Gaps = 2/332 (0%)
Frame = +3
Query: 63 LACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENK 242
+ C L SF L+F +S KG + E +WG++ I L+IP D++D +RW +
Sbjct: 1 MKCKFLGSFFLLFSLSGKGADCRDNETIWGVLGHGITLNIPNFQMTDDIDEVRWVRRGTL 60
Query: 243 IAEFKKNKETHPVKDTYMMLPNGTLRIKD-LKRDDEGIYKVTVYATDGKHMLERKFDLQI 419
+AEFK+ K + +TY +L NG+L+IK + R+D G Y V VY T+G LE+ D++I
Sbjct: 61 VAEFKRKKPPFLISETYEVLANGSLKIKKPMMRNDSGTYNVMVYGTNGMTRLEKDLDVRI 120
Query: 420 LDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLFK 599
L+ VSKP+I W C N T+TC V +G+D +LKLY ++ QK + ++W T + FK
Sbjct: 121 LERVSKPMIHWECPNTTLTCAVLQGTDFELKLYQGETLLNSLPQKNMSYQW-TNLNAPFK 179
Query: 600 CVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRRN 779
C A N S++ M ++C +GL Y+ +G+ GG + ++ +AL IF KR+K++ RR
Sbjct: 180 CEAINPVSKESKMEVVNCPEKGLSFYVTVGVGAGGLLLVLLVALFIFCICKRRKRNRRRK 239
Query: 780 DEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXV-Q 956
DEELEI+A R S ERG KPH P + QN V Q PP PGH Q +
Sbjct: 240 DEELEIKASRTSTVERGPKPHSTPAAAAQNSVALQAPPPPGHHLQTPGHRPLPPGHRTRE 299
Query: 957 HPQKKRPPPTPGTQVHQQKGLPLPQPPVSTKP 1052
H QKKRPPP+ GTQ+HQQKG PLP+P V KP
Sbjct: 300 HQQKKRPPPS-GTQIHQQKGPPLPRPRVQPKP 330
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 55.5 bits (132), Expect = 8e-08
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 21/250 (8%)
Frame = +3
Query: 102 IVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNENKIAEFKKNKETHPV 281
+ + GT+ ++ + G V L+I E+ VD++ W N +A KK+ T
Sbjct: 19 VTAASGTLKKVAGALDGSVT--FTLNITEIK----VDYVVWTFNTFFLAMVKKDGVTSQS 72
Query: 282 KDTY-MMLPNG--TLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQILDGVSKPVISW 452
+ ++ P+G ++++ LK++D G Y+ +Y+T + L +++ L + +S+P ++
Sbjct: 73 SNKERIVFPDGLYSMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLHVYKHLSRPKVTI 132
Query: 453 S-CANKTVTCEV----AEGSDPKLKLYVNKSTAR------EGRQKVILWKWNTKWSTLFK 599
+NK TC + + D + Y K+ + +G I W+ K L
Sbjct: 133 DRQSNKNGTCVINLTCSTDQDGENVTYSWKAVGQGDNQFHDGATLSIAWRSGEKDQAL-T 191
Query: 600 CVASNNASEQISMVTIS---CTGQGLDIYLIIGI----CGGGTVFLIFIALLIFYTSKRK 758
C+A N S S C D+ + GI C + L + L IF+T K
Sbjct: 192 CMARNPVSNSFSTPVFPQKLCEDAATDLTSLRGILYILCFSAVLILFAVLLTIFHTMWIK 251
Query: 759 KQSSRRNDEE 788
K D++
Sbjct: 252 KGKGCEEDKK 261
>ref|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mus musculus].
Length = 418
Score = 50.4 bits (119), Expect = 2e-06
Identities = 74/349 (21%), Positives = 136/349 (38%), Gaps = 60/349 (17%)
Frame = +3
Query: 36 RGKLA-PKMSLACTTLASFLLIFIVSNKGT-VSQITEVVWGIVDQDINLDIPELSKHDNV 209
RG L+ +L + LLI V +G ++ ++ G V + L + S +
Sbjct: 5 RGALSRASRALRLSPFVYLLLIQPVPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDK 64
Query: 210 DHIRWQKNENKIAEFKKNKETHPV-------KDTYMMLPNGTLRIKDLKRDDEGIYKVTV 368
++WQ +K ++ T + +D + NG+L + DL+ DEG Y+V +
Sbjct: 65 PVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEI 124
Query: 369 YATDGKHMLERKFDLQILDGVSKPVISWSCANK-------TVTCEVAEGSDPKLK-LYVN 524
TD E+ +L + +S+P + + T+ C G+ P L
Sbjct: 125 SITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDG 184
Query: 525 KSTAREGR------QKVI-LWKWNTKWSTLFKCVASNNASEQISMVTISCTGQGLDIYLI 683
K + R QKV+ + + + L+ CV N S+ S+ + +Y+I
Sbjct: 185 KPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCVVENPISQVRSLPVKITVYRRSSLYII 244
Query: 684 IGICGGGTVFLIFIALLIFYTSKRKKQSSRR--------------NDEELEIRA---KRA 812
+ G +FL+ + + K K+S ++ ND+ L+ A R+
Sbjct: 245 LST---GGIFLLVTLVTVCACWKPSKKSRKKRKLEKQNSLEYMDQNDDRLKSEADTLPRS 301
Query: 813 SPEER-------------GRKPHPFPGSTPQN------PVISQTPPMPG 902
+ER +P P + P++ P S +PP+PG
Sbjct: 302 GEQERKNPMALYILKDKDSSEPDENPATEPRSTTEPGPPGYSVSPPVPG 350
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,699,925
Number of extensions: 928371
Number of successful extensions: 5117
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4925
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998941.1| T-cell surface antigen CD2 [Sus scrofa]. 650 0.0
>ref|NP_998941.1| T-cell surface antigen CD2 [Sus scrofa].
Length = 340
Score = 650 bits (1676), Expect = 0.0
Identities = 319/340 (93%), Positives = 322/340 (94%)
Frame = +3
Query: 57 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 236
MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE
Sbjct: 1 MSLACTTLASFLLIFIVSNKGTVSQITEVVWGIVDQDINLDIPELSKHDNVDHIRWQKNE 60
Query: 237 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLQ 416
NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDL
Sbjct: 61 NKIAEFKKNKETHPVKDTYMMLPNGTLRIKDLKRDDEGIYKVTVYATDGKHMLERKFDLP 120
Query: 417 ILDGVSKPVISWSCANKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 596
ILDGVSKPVISWSCA+KTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF
Sbjct: 121 ILDGVSKPVISWSCADKTVTCEVAEGSDPKLKLYVNKSTAREGRQKVILWKWNTKWSTLF 180
Query: 597 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 776
KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR
Sbjct: 181 KCVASNNASEQISMVTISCTGQGLDIYLIIGICGGGTVFLIFIALLIFYTSKRKKQSSRR 240
Query: 777 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAXXXXXXXXXXXVQ 956
NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQA VQ
Sbjct: 241 NDEELEIRAKRASPEERGRKPHPFPGSTPQNPVISQTPPMPGHRSQAPTPRPGPPGPRVQ 300
Query: 957 HPQKKRPPPTPGTQVHQQKGLPLPQPPVSTKPTHXXQRNS 1076
HPQKKRPPPTPGTQVHQQKG PLP+P V TKPTH + NS
Sbjct: 301 HPQKKRPPPTPGTQVHQQKGPPLPKPRVQTKPTHEAKENS 340
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,589,999
Number of extensions: 687311
Number of successful extensions: 3718
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3601
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002418
(1113 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 563 e-158
>Sscrofa_Chr04
|| Length = 143465943
Score = 563 bits (284), Expect = e-158
Identities = 300/308 (97%)
Strand = Plus / Minus
Query: 116 aggtacagtctctcaaattactgaggttgtctggggcatcgtggatcaagacatcaacct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941506 aggtacagtctctcaaattactgaggttgtctggggcatcgtggatcaagacatcaacct 113941447
Query: 176 ggacattcctgaactttcaaaacatgataacgtagatcatatacgatggcagaagaatga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941446 ggacattcctgaactttcaaaacatgataacgtagatcatatacgatggcagaagaatga 113941387
Query: 236 aaacaagatcgcagaatttnnnnnnnncaaagaaactcaccctgtgaaagacacatacat 295
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113941386 aaacaagatcgcagaatttaaaaaaaacaaagaaactcaccctgtgaaagacacatacat 113941327
Query: 296 gatgttaccaaatggaactctgagaattaaagatctgaagagagatgatgagggtatcta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941326 gatgttaccaaatggaactctgagaattaaagatctgaagagagatgatgagggtatcta 113941267
Query: 356 caaggtaactgtctatgctacggatggaaaacacatgctggagagaaaatttgatttgca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941266 caaggtaactgtctatgctacggatggaaaacacatgctggagagaaaatttgatttgca 113941207
Query: 416 gattctag 423
||||||||
Sbjct: 113941206 gattctag 113941199
Score = 500 bits (252), Expect = e-139
Identities = 310/334 (92%)
Strand = Plus / Minus
Query: 780 gatgaggagctggagataagagcgaagagagcgagccccgaggaaaggggccggaagccc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928822 gatgaggagctggagataagagcgaagagagcgagccccgaggaaaggggccggaagccc 113928763
Query: 840 catccatttccaggctcaactcctcaaaatccggtcatttcccaaactcctccaatgcct 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928762 catccatttccaggctcaactcctcaaaatccggtcatttcccaaactcctccaatgcct 113928703
Query: 900 ggtcatcgttctcaggcacctactcctcgtcccgggcctcctggcccccgtgtccagcac 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113928702 ggtcatcgttctcaggcacctactcctcgtcccgggcctcctggcccccgtgtccagcac 113928643
Query: 960 ccacnnnnnnnnnggcctccccctaccccgggcacacaagttcaccagcaaaaaggcctc 1019
|||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113928642 ccacagaagaagaggcctcctcctaccccgggcacacaagttcaccagcaaaaaggccct 113928583
Query: 1020 cccctcccccagcctccagtttcaacaaaacctacccatgangnncaaagaaactcataa 1079
||||||||| |||||| |||| |||||||||||||||||| | || ||||||||||
Sbjct: 113928582 cccctccccaagcctcgagttcaaacaaaacctacccatgaggccaaagaaaactcataa 113928523
Query: 1080 ctctgtctcctgatgcgnntgtcccttccctcta 1113
||||||||||||||||| |||||||||||||||
Sbjct: 113928522 ctctgtctcctgatgcggttgtcccttccctcta 113928489
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Minus
Query: 422 agatggggtctcaaaacctgtaatctcatggagctgtgccaacaaaacggtgacctgtga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113937127 agatggggtctcaaaacctgtaatctcatggagctgtgccaacaaaacggtgacctgtga 113937068
Query: 482 ggtagcagaaggaagtgaccctaagttaaaactgtatgtaaataagtccactgccagaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113937067 ggtagcagaaggaagtgaccctaagttaaaactgtatgtaaataagtccactgccagaga 113937008
Query: 542 aggtcgtcagaaggtcatcctgtggaagtggaacaccaaatggagcacattattcaagtg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113937007 aggtcgtcagaaggtcatcctgtggaagtggaacaccaaatggagcacattattcaagtg 113936948
Query: 602 tgtggccagtaacaacgccagtgagcaaatcagcatggtgaccatcagttgtacggg 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113936947 tgtggccagtaacaacgccagtgagcaaatcagcatggtgaccatcagttgtacggg 113936891
Score = 238 bits (120), Expect = 5e-60
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 657 gggcaaggtctggatatctatctcatcatcggcatctgcggaggaggcaccgtattcctc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113932974 gggcaaggtctggatatctatctcatcatcggcatctgcggaggaggcaccgtattcctc 113932915
Query: 717 atcttcatagcactactcatattctacaccagcaagaggaaaaagcagagcagcaggaga 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113932914 atcttcatagcactactcatattctactccagcaagaggaaaaagcagagcagcaggaga 113932855
Query: 777 aatg 780
||||
Sbjct: 113932854 aatg 113932851
Score = 224 bits (113), Expect = 8e-56
Identities = 120/121 (99%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 1 tttcagttccttt-gtaagaagagctcagaatcacaagagggaaacttgccccaaagatg 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941756 tttcagttcctttcgtaagaagagctcagaatcacaagagggaaacttgccccaaagatg 113941697
Query: 60 agcctcgcatgtacaaccttggccagcttcctcctgattttcattgtttccaacaaaggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113941696 agcctcgcatgtacaaccttggccagcttcctcctgattttcattgtttccaacaaaggt 113941637
Query: 120 a 120
|
Sbjct: 113941636 a 113941636
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,851,094
Number of extensions: 356
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 7
Length of query: 1113
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1092
Effective length of database: 2,808,413,156
Effective search space: 3066787166352
Effective search space used: 3066787166352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)