Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776856.1| peroxiredoxin-1 [Bos taurus]. 403 e-112
Alignment gi|NP_777188.1| peroxiredoxin-2 [Bos taurus]. 313 2e-85
Alignment gi|NP_776858.1| peroxiredoxin-4 [Bos taurus]. 282 4e-76
Alignment gi|NP_776857.1| thioredoxin-dependent peroxide reductase, mitoc... 264 1e-70
Alignment gi|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus]. 84 3e-16
Alignment gi|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [B... 83 3e-16
Alignment gi|NP_777068.1| peroxiredoxin-6 [Bos taurus]. 82 6e-16
>ref|NP_776856.1| peroxiredoxin-1 [Bos taurus].
Length = 199
Score = 403 bits (1036), Expect = e-112
Identities = 195/199 (97%), Positives = 197/199 (98%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAP FKATAVMPDGQFKDISL+DYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPQFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLIS PKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISAPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|NP_777188.1| peroxiredoxin-2 [Bos taurus].
Length = 199
Score = 313 bits (801), Expect = 2e-85
Identities = 145/192 (75%), Positives = 169/192 (88%)
Frame = +2
Query: 77 AKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEE 256
A +G AP F+ATAV+ DG FK++ LSDYKGKYVV FFYPLDFTFVCPTEI+AFS+RA E
Sbjct: 7 AHVGKPAPEFQATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAE 65
Query: 257 FKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGI 436
F KLNC+V+G SVDS F HLAWINTP+K+GGLGP+NIPL++D R ++ DYGVLK DEGI
Sbjct: 66 FHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGI 125
Query: 437 SFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIK 616
++RGLF+ID KG+LRQ+TINDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGW PGSDTIK
Sbjct: 126 AYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWTPGSDTIK 185
Query: 617 PDVQKSKEYFSK 652
P+V SKEYFSK
Sbjct: 186 PNVDDSKEYFSK 197
>ref|NP_776858.1| peroxiredoxin-4 [Bos taurus].
Length = 274
Score = 282 bits (721), Expect = 4e-76
Identities = 132/201 (65%), Positives = 164/201 (81%)
Frame = +2
Query: 50 ADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEI 229
A+ ++ AKI AP+++ TAV+ +G+FK++ L+DY+GKY+VFFFYPLDFTFVCPTEI
Sbjct: 73 AEHSLHLSKAKISKPAPYWEGTAVI-NGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEI 131
Query: 230 IAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDY 409
IAF +R +EF+ +N +V+ SVDS F HLAWINTP++QGGLG +NIPL++D I++DY
Sbjct: 132 IAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDY 191
Query: 410 GVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAG 589
GV D G + RGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQ+TDKHGEVCPAG
Sbjct: 192 GVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAG 251
Query: 590 WKPGSDTIKPDVQKSKEYFSK 652
WKPGS+TI PD +YF K
Sbjct: 252 WKPGSETIIPDPAGKLKYFDK 272
>ref|NP_776857.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Bos taurus].
Length = 257
Score = 264 bits (674), Expect = 1e-70
Identities = 131/218 (60%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Frame = +2
Query: 8 VCFLAAL--GGFCLRTADSNMSSGNAK-IGHRAPHFKATAVMPDGQFKDISLSDYKGKYV 178
+C AL G + A S SS +A + AP+FK TAV+ G+FK+ISL D+KGKY+
Sbjct: 38 MCLTNALWSGSDQAKFAFSTSSSYHAPAVTQHAPYFKGTAVV-SGEFKEISLDDFKGKYL 96
Query: 179 VFFFYPLDFTFVCPTEIIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP 358
V FFYPLDFTFVCPTEIIAFS++A EF +NC+V+ SVDSHF HLAWINTP+K GGLG
Sbjct: 97 VLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGH 156
Query: 359 MNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRL 538
MNI L+SD + I++DYGVL G++ RGLFIID G+++ +++NDLPVGRSV+ETLRL
Sbjct: 157 MNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL 216
Query: 539 VQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSK 652
V+AFQF + HGEVCPA W P S TIKP S+EYF K
Sbjct: 217 VKAFQFVEAHGEVCPANWTPESPTIKPHPTASREYFEK 254
>ref|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus].
Length = 224
Score = 83.6 bits (205), Expect = 3e-16
Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSER 247
G+ +G AP+F+A P G+ I DY G + + +P DFT VC TE+ ++
Sbjct: 3 GDLLLGDEAPNFEANT--PIGR---IRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKL 57
Query: 248 AEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL 418
A EF K N +I S+DS HLAW G GP + P+I D R +A G+L
Sbjct: 58 APEFAKRNVMMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGML 117
Query: 419 ------KADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVC 580
K D + R +FI L+ + GR+ DE LR++ + Q T +
Sbjct: 118 DPAEKDKKDMPETSRVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVAT 177
Query: 581 PAGWKPG-SDTIKPDV--QKSKEYFSK 652
P WK G S + P V +++K+ F K
Sbjct: 178 PVDWKNGDSVMVLPTVPEEEAKKLFPK 204
>ref|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [Bos taurus].
Length = 224
Score = 83.2 bits (204), Expect = 3e-16
Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSER 247
G+ +G AP+F+A P G+ I DY G + + +P DFT VC TE+ ++
Sbjct: 3 GDLLLGDEAPNFEANT--PIGR---IRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKL 57
Query: 248 AEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL 418
A EF K N +I S+DS HLAW G GP + P+I D R +A G+L
Sbjct: 58 APEFAKRNVMMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGML 117
Query: 419 ------KADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVC 580
K D + R +FI L+ + GR+ DE LR++ + Q T +
Sbjct: 118 DPAEKDKKDMPETSRVVFIFGPDKKLKLSILYPANTGRNFDEILRVIISLQLTAEKRVAT 177
Query: 581 PAGWKPG-SDTIKPDV--QKSKEYFSK 652
P WK G S + P V +++K+ F K
Sbjct: 178 PVDWKNGDSVMVLPTVPEEEAKKLFPK 204
>ref|NP_777068.1| peroxiredoxin-6 [Bos taurus].
Length = 224
Score = 82.4 bits (202), Expect = 6e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGDEAPNFEANTTIGRIRFHDY-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL- 418
EF K N ++I S+DS HLAW G P + P+I D R +A G+L
Sbjct: 59 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLD 118
Query: 419 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 119 PAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 178
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + P + +++K+ F K
Sbjct: 179 VDWKNGDSVMVLPTIPEEEAKKLFPK 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,244,694
Number of extensions: 1148134
Number of successful extensions: 2799
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2794
Number of HSP's successfully gapped: 7
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis fa... 404 e-113
Alignment gi|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1... 372 e-103
Alignment gi|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 320 2e-87
Alignment gi|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 320 2e-87
Alignment gi|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) ... 286 2e-77
Alignment gi|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3... 281 5e-76
Alignment gi|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent per... 264 1e-70
Alignment gi|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent per... 256 2e-68
Alignment gi|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent per... 256 3e-68
Alignment gi|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent per... 241 6e-64
>ref|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis familiaris].
Length = 199
Score = 404 bits (1037), Expect = e-113
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH AP+FKATAVMPDGQFKD+SLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPL+SDPKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1 [Canis familiaris].
Length = 199
Score = 372 bits (956), Expect = e-103
Identities = 179/199 (89%), Positives = 187/199 (93%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH P+FKATAVMPDG+FKD+SLSDYKGKYVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPVPNFKATAVMPDGRFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHF HLAWINTPKKQGGLGPMNIPL+SDPK TIAQDY VLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKHTIAQDYEVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADE IS RGLF+IDDKGIL QIT+NDLPVG SVDE+LRLVQAF FTDKHGEVC AGWKPG
Sbjct: 121 ADESISLRGLFVIDDKGILWQITVNDLPVGHSVDESLRLVQAFPFTDKHGEVCSAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 2 [Canis familiaris].
Length = 198
Score = 320 bits (819), Expect = 2e-87
Identities = 149/197 (75%), Positives = 175/197 (88%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SG A IG AP F+ATAV+ DG FK++ L DYKGKY+V FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MTSGKAHIGKPAPPFQATAVV-DGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
E AE+F+KL C+V+G SVDS F HLAWINTP+K+GGLGP+NIPL++D R++++DYGVLK
Sbjct: 60 EHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGWKPG
Sbjct: 120 EDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDDSKEYFSK 196
>ref|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 1 [Canis familiaris].
Length = 198
Score = 320 bits (819), Expect = 2e-87
Identities = 149/197 (75%), Positives = 175/197 (88%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SG A IG AP F+ATAV+ DG FK++ L DYKGKY+V FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MTSGKAHIGKPAPPFQATAVV-DGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
E AE+F+KL C+V+G SVDS F HLAWINTP+K+GGLGP+NIPL++D R++++DYGVLK
Sbjct: 60 EHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGWKPG
Sbjct: 120 EDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDDSKEYFSK 196
>ref|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) (Thioredoxin
peroxidase AO372) (Thioredoxin-dependent peroxide
reductase A0372) (Antioxidant enzyme AOE372) (AOE37-2)
isoform 1 [Canis familiaris].
Length = 272
Score = 286 bits (733), Expect = 2e-77
Identities = 135/201 (67%), Positives = 164/201 (81%)
Frame = +2
Query: 50 ADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEI 229
AD ++ AKI AP+++ TAV+ +G+FK++ L+DY+GKY+VFFFYPLDFTFVCPTEI
Sbjct: 71 ADHSLHHSKAKISKPAPYWEGTAVI-NGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEI 129
Query: 230 IAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDY 409
IAF +R EEFK +N +V+ SVDS F HLAWINTP++QGGLGP+ IPL+SD I++DY
Sbjct: 130 IAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDY 189
Query: 410 GVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAG 589
GV D G + RGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQ+TD+HGEVCPAG
Sbjct: 190 GVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAG 249
Query: 590 WKPGSDTIKPDVQKSKEYFSK 652
WKPGS+TI PD +YF K
Sbjct: 250 WKPGSETIIPDPAGKLKYFDK 270
>ref|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3 [Canis familiaris].
Length = 257
Score = 281 bits (720), Expect = 5e-76
Identities = 132/200 (66%), Positives = 162/200 (81%)
Frame = +2
Query: 53 DSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEII 232
+S + N + AP+++ TAV+ +G+FK++ L+DY+GKY+VFFFYPLDFTFVCPTEII
Sbjct: 57 ESEELTDNVMVSKPAPYWEGTAVI-NGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEII 115
Query: 233 AFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 412
AF +R EEFK +N +V+ SVDS F HLAWINTP++QGGLGP+ IPL+SD I++DYG
Sbjct: 116 AFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYG 175
Query: 413 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 592
V D G + RGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQ+TD+HGEVCPAGW
Sbjct: 176 VYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGW 235
Query: 593 KPGSDTIKPDVQKSKEYFSK 652
KPGS+TI PD +YF K
Sbjct: 236 KPGSETIIPDPAGKLKYFDK 255
>ref|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 1 [Canis familiaris].
Length = 257
Score = 264 bits (674), Expect = 1e-70
Identities = 126/202 (62%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Frame = +2
Query: 50 ADSNMSSGNAK-IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTE 226
A S SS +A + AP+FK TAV+ +G+FKD++L D+KG+Y+V FFYPLDFTFVCPTE
Sbjct: 54 AFSTSSSYHAPAVTQHAPYFKGTAVV-NGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTE 112
Query: 227 IIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQD 406
I+AFS++A+EF +NC V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++D
Sbjct: 113 IVAFSDKAKEFHDVNCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 172
Query: 407 YGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPA 586
YGVL GI+ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA
Sbjct: 173 YGVLLEGPGIALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPA 232
Query: 587 GWKPGSDTIKPDVQKSKEYFSK 652
W P S TIKP SKEYF K
Sbjct: 233 NWTPDSPTIKPHPTASKEYFEK 254
>ref|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 257
Score = 256 bits (655), Expect = 2e-68
Identities = 122/202 (60%), Positives = 155/202 (76%), Gaps = 1/202 (0%)
Frame = +2
Query: 50 ADSNMSSGNAK-IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTE 226
A S SS +A + AP+FK TA++ +G+FKD++L D+KG+Y+V FFYPLDFTFVCPTE
Sbjct: 54 AFSTSSSYHAPAVTQHAPYFKGTAIV-NGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTE 112
Query: 227 IIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQD 406
I+AFS++A+EF +NC V+ SVDSHF HLAWINTP+K G LG MNI L+SD + I +D
Sbjct: 113 IVAFSDKAKEFHDVNCDVVAVSVDSHFTHLAWINTPQKNGSLGHMNIALLSDLTKQIPRD 172
Query: 407 YGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPA 586
YG+L GI+ RGLFIID G+++ +++NDLPVGRSV+ETL LV+AFQF + HGEVCPA
Sbjct: 173 YGMLLEGPGIALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLCLVKAFQFVETHGEVCPA 232
Query: 587 GWKPGSDTIKPDVQKSKEYFSK 652
W P S TIKP SKEYF K
Sbjct: 233 NWTPDSPTIKPHTTASKEYFEK 254
>ref|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 2 [Canis familiaris].
Length = 260
Score = 256 bits (653), Expect = 3e-68
Identities = 125/205 (60%), Positives = 157/205 (76%), Gaps = 4/205 (1%)
Frame = +2
Query: 50 ADSNMSSGNAK-IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTE 226
A S SS +A + AP+FK TAV+ +G+FKD++L D+KG+Y+V FFYPLDFTFVCPTE
Sbjct: 54 AFSTSSSYHAPAVTQHAPYFKGTAVV-NGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTE 112
Query: 227 IIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQD 406
I+AFS++A+EF +NC V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++D
Sbjct: 113 IVAFSDKAKEFHDVNCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 172
Query: 407 YGVLKAD---EGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEV 577
YGVL A +G GLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEV
Sbjct: 173 YGVLSAGFVLQGSPSLGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 232
Query: 578 CPAGWKPGSDTIKPDVQKSKEYFSK 652
CPA W P S TIKP SKEYF K
Sbjct: 233 CPANWTPDSPTIKPHPTASKEYFEK 257
>ref|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 269
Score = 241 bits (616), Expect = 6e-64
Identities = 112/190 (58%), Positives = 144/190 (75%)
Frame = +2
Query: 83 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 262
+ AP+FK TAV+ + +FKD++L D+KG+Y+V FFYPL FTFVCPTEI+AFS++A+EF
Sbjct: 78 VTQHAPYFKGTAVV-NREFKDLTLDDFKGRYLVLFFYPLHFTFVCPTEIVAFSDKAKEFH 136
Query: 263 KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISF 442
+NC V+ SVDSHF HLAWIN +K G LG MNI L+SD + I+++YGVL GI+
Sbjct: 137 DVNCDVVAVSVDSHFTHLAWINALQKNGSLGHMNIALLSDLTKQISREYGVLLEGPGIAL 196
Query: 443 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 622
RGLFI D G+++ +++NDLPVGRSV+ETL LV+AF F + HGEVCPA W P S IKPD
Sbjct: 197 RGLFITDPNGVIKHLSVNDLPVGRSVEETLCLVKAFHFVETHGEVCPANWTPDSPIIKPD 256
Query: 623 VQKSKEYFSK 652
SKEYF K
Sbjct: 257 PSASKEYFEK 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,907,957
Number of extensions: 1170248
Number of successful extensions: 2874
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2870
Number of HSP's successfully gapped: 15
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001189360.1| peroxiredoxin-1 [Homo sapiens]. 404 e-113
Alignment gi|NP_002565.1| peroxiredoxin-1 [Homo sapiens]. 404 e-113
Alignment gi|NP_859047.1| peroxiredoxin-1 [Homo sapiens]. 404 e-113
Alignment gi|NP_859048.1| peroxiredoxin-1 [Homo sapiens]. 404 e-113
Alignment gi|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens]. 327 8e-90
Alignment gi|NP_006397.1| peroxiredoxin-4 [Homo sapiens]. 288 5e-78
Alignment gi|NP_054817.2| thioredoxin-dependent peroxide reductase, mitoc... 267 1e-71
Alignment gi|NP_006784.1| thioredoxin-dependent peroxide reductase, mitoc... 265 5e-71
Alignment gi|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens]. 140 1e-33
Alignment gi|NP_004896.1| peroxiredoxin-6 [Homo sapiens]. 79 5e-15
>ref|NP_001189360.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 404 bits (1038), Expect = e-113
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH AP+FKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAW+NTPKKQGGLGPMNIPL+SDPKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|NP_002565.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 404 bits (1038), Expect = e-113
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH AP+FKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAW+NTPKKQGGLGPMNIPL+SDPKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|NP_859047.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 404 bits (1038), Expect = e-113
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH AP+FKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAW+NTPKKQGGLGPMNIPL+SDPKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|NP_859048.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 404 bits (1038), Expect = e-113
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGH AP+FKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEFKKLNCQVIGASVDSHFCHLAW+NTPKKQGGLGPMNIPL+SDPKRTIAQDYGVLK
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 181 SDTIKPDVQKSKEYFSKQK 199
>ref|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens].
Length = 198
Score = 327 bits (839), Expect = 8e-90
Identities = 153/197 (77%), Positives = 177/197 (89%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SGNA+IG AP FKATAV+ DG FK++ LSDYKGKYVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
RAE+F+KL C+V+G SVDS F HLAWINTP+K+GGLGP+NIPL++D R +++DYGVLK
Sbjct: 60 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGWKPG
Sbjct: 120 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDDSKEYFSK 196
>ref|NP_006397.1| peroxiredoxin-4 [Homo sapiens].
Length = 271
Score = 288 bits (737), Expect = 5e-78
Identities = 136/201 (67%), Positives = 164/201 (81%)
Frame = +2
Query: 50 ADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEI 229
AD ++ AKI AP+++ TAV+ DG+FK++ L+DY+GKY+VFFFYPLDFTFVCPTEI
Sbjct: 70 ADHSLHLSKAKISKPAPYWEGTAVI-DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEI 128
Query: 230 IAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDY 409
IAF +R EEF+ +N +V+ SVDS F HLAWINTP++QGGLGP+ IPL+SD I++DY
Sbjct: 129 IAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDY 188
Query: 410 GVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAG 589
GV D G + RGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQ+TDKHGEVCPAG
Sbjct: 189 GVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAG 248
Query: 590 WKPGSDTIKPDVQKSKEYFSK 652
WKPGS+TI PD +YF K
Sbjct: 249 WKPGSETIIPDPAGKLKYFDK 269
>ref|NP_054817.2| thioredoxin-dependent peroxide reductase, mitochondrial isoform b
[Homo sapiens].
Length = 238
Score = 267 bits (683), Expect = 1e-71
Identities = 129/217 (59%), Positives = 165/217 (76%), Gaps = 1/217 (0%)
Frame = +2
Query: 5 GVCFLAALG-GFCLRTADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVV 181
G+ AAL C RT+ +N+ + +AP+FK TAV+ +G+FKD+SL D+KGKY+V
Sbjct: 23 GISATAALRPAACGRTSLTNLLCSGSS---QAPYFKGTAVV-NGEFKDLSLDDFKGKYLV 78
Query: 182 FFFYPLDFTFVCPTEIIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPM 361
FFYPLDFTFVCPTEI+AFS++A EF +NC+V+ SVDSHF HLAWINTP+K GGLG M
Sbjct: 79 LFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHM 138
Query: 362 NIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLV 541
NI L+SD + I++DYGVL G++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV
Sbjct: 139 NIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLV 198
Query: 542 QAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSK 652
+AFQ+ + HGEVCPA W P S TIKP SKEYF K
Sbjct: 199 KAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQK 235
>ref|NP_006784.1| thioredoxin-dependent peroxide reductase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 256
Score = 265 bits (677), Expect = 5e-71
Identities = 121/190 (63%), Positives = 152/190 (80%)
Frame = +2
Query: 83 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 262
+ AP+FK TAV+ +G+FKD+SL D+KGKY+V FFYPLDFTFVCPTEI+AFS++A EF
Sbjct: 65 VTQHAPYFKGTAVV-NGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFH 123
Query: 263 KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISF 442
+NC+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL G++
Sbjct: 124 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLAL 183
Query: 443 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 622
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEVCPA W P S TIKP
Sbjct: 184 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPS 243
Query: 623 VQKSKEYFSK 652
SKEYF K
Sbjct: 244 PAASKEYFQK 253
>ref|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens].
Length = 142
Score = 140 bits (354), Expect = 1e-33
Identities = 68/95 (71%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SGNA+IG AP FKATAV+ DG FK++ LSDYKGKYVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINT-PKKQ 343
RAE+F+KL C+V+G SVDS F HLAW PK++
Sbjct: 60 NRAEDFRKLGCEVLGVSVDSQFTHLAWYEQGPKRE 94
>ref|NP_004896.1| peroxiredoxin-6 [Homo sapiens].
Length = 224
Score = 79.3 bits (194), Expect = 5e-15
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGDVAPNFEANTTVGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAW---INTPKKQGGLGPMNIPLISDPKRTIAQDYGVL- 418
EF K N ++I S+DS HLAW IN + + P+I D R +A G+L
Sbjct: 59 PEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLD 118
Query: 419 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
K ++G ++ R +F+ L+ + GR+ DE LR+V + Q T + P
Sbjct: 119 PAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATP 178
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + P + +++K+ F K
Sbjct: 179 VDWKDGDSVMVLPTIPEEEAKKLFPK 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,055,512
Number of extensions: 1151024
Number of successful extensions: 2633
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2627
Number of HSP's successfully gapped: 10
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035164.1| peroxiredoxin-1 [Mus musculus]. 395 e-110
Alignment gi|NP_035693.3| peroxiredoxin-2 [Mus musculus]. 321 6e-88
Alignment gi|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculu... 303 2e-82
Alignment gi|NP_058044.1| peroxiredoxin-4 [Mus musculus]. 287 8e-78
Alignment gi|NP_031478.1| thioredoxin-dependent peroxide reductase, mitoc... 265 5e-71
Alignment gi|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus muscul... 82 5e-16
Alignment gi|NP_031479.1| peroxiredoxin-6 [Mus musculus]. 80 2e-15
Alignment gi|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mu... 78 1e-14
>ref|NP_035164.1| peroxiredoxin-1 [Mus musculus].
Length = 199
Score = 395 bits (1015), Expect = e-110
Identities = 190/199 (95%), Positives = 196/199 (98%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIG+ AP+FKATAVMPDGQFKDISLS+YKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGYPAPNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RA+EFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK
Sbjct: 61 DRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 120
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDE +RLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDV KSKEYFSKQK
Sbjct: 181 SDTIKPDVNKSKEYFSKQK 199
>ref|NP_035693.3| peroxiredoxin-2 [Mus musculus].
Length = 198
Score = 321 bits (822), Expect = 6e-88
Identities = 150/197 (76%), Positives = 177/197 (89%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SGNA+IG AP F ATAV+ DG FK+I LSDY+GKYVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MASGNAQIGKSAPDFTATAVV-DGAFKEIKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+ AE+F+KL C+V+G SVDS F HLAWINTP+K+GGLGP+NIPL++D ++++Q+YGVLK
Sbjct: 60 DHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGWKPG
Sbjct: 120 NDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDDSKEYFSK 196
>ref|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculus].
Length = 198
Score = 303 bits (775), Expect = 2e-82
Identities = 143/197 (72%), Positives = 170/197 (86%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SGNA IG P F ATAV+ DG FK+I LSDY+GKY+V FFYPLD TFVCPTEIIAFS
Sbjct: 1 MASGNAHIGKSTPDFTATAVV-DGTFKEIKLSDYRGKYMVLFFYPLDITFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+ AE+F+KL C+V+G SVDS F H AWINT +K+GGLGP+NIPL++D ++++Q+YGVLK
Sbjct: 60 DHAEDFRKLGCEVLGVSVDSQFTHQAWINTSRKEGGLGPLNIPLLADVTKSLSQNYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSV E LRLVQAFQ+TD+HGEV PAGWKPG
Sbjct: 120 NDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVHEALRLVQAFQYTDEHGEVSPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDYSKEYFSK 196
>ref|NP_058044.1| peroxiredoxin-4 [Mus musculus].
Length = 274
Score = 287 bits (735), Expect = 8e-78
Identities = 135/201 (67%), Positives = 164/201 (81%)
Frame = +2
Query: 50 ADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEI 229
AD ++ AKI AP+++ TAV+ +G+FK++ L+DY+GKY+VFFFYPLDFTFVCPTEI
Sbjct: 73 ADHSLHLSKAKISKPAPYWEGTAVI-NGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEI 131
Query: 230 IAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDY 409
IAF +R EEFK +N +V+ SVDS F HLAWINTP++QGGLGP+ IPL+SD I++DY
Sbjct: 132 IAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDY 191
Query: 410 GVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAG 589
GV D G + RGLFIIDDKG+LRQIT+NDLPVGRSVDETLRLVQAFQ+TDKHGEVCPAG
Sbjct: 192 GVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAG 251
Query: 590 WKPGSDTIKPDVQKSKEYFSK 652
WKPGS+TI PD +YF K
Sbjct: 252 WKPGSETIIPDPAGKLKYFDK 272
>ref|NP_031478.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Mus musculus].
Length = 257
Score = 265 bits (676), Expect = 5e-71
Identities = 122/190 (64%), Positives = 152/190 (80%)
Frame = +2
Query: 83 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 262
+ AP+FK TAV+ +G+FK++SL D+KGKY+V FFYPLDFTFVCPTEI+AFS++A EF
Sbjct: 66 VTQHAPYFKGTAVV-NGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFH 124
Query: 263 KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISF 442
+NC+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL GI+
Sbjct: 125 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIAL 184
Query: 443 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 622
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP
Sbjct: 185 RGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIKPS 244
Query: 623 VQKSKEYFSK 652
SKEYF K
Sbjct: 245 PTASKEYFEK 254
>ref|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus musculus].
Length = 224
Score = 82.4 bits (202), Expect = 5e-16
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP F+A + +F D + + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGEEAPDFEANTTIGRIRFHDF----LGNSWGMLFSHPKDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVLK 421
EF K N ++I SVDS HLAW G P + P+I D R I+ + +L
Sbjct: 59 PEFAKRNVKLIALSVDSVEDHLAWSKDINAYNGATPKEKLPFPIIDDKDRDISILFCMLD 118
Query: 422 ADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
E ++ RG+FI L+ + GR+ DE LR++ + Q T+ P
Sbjct: 119 PVEKDANSMPLTARGVFIFGPDKKLKMSLLYPNSTGRNFDEILRVIDSLQLTETKPVATP 178
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + PD+ +++K F K
Sbjct: 179 VDWKKGESVMVLPDLPEEEAKRCFPK 204
>ref|NP_031479.1| peroxiredoxin-6 [Mus musculus].
Length = 224
Score = 80.1 bits (196), Expect = 2e-15
Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVLK 421
EF K N ++I S+DS HLAW G P + P+I D R +A G+L
Sbjct: 59 PEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLD 118
Query: 422 ADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
E ++ R +FI L+ + GR+ DE LR+V + Q T P
Sbjct: 119 PVEKDANNMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATP 178
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + P + +++K+ F K
Sbjct: 179 VDWKKGESVMVVPTLSEEEAKQCFPK 204
>ref|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mus musculus].
Length = 244
Score = 77.8 bits (190), Expect = 1e-14
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 23 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 78
Query: 251 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVLK 421
EF K N ++I S+DS HLAW G P + P+I D R +A G+L
Sbjct: 79 PEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLD 138
Query: 422 ADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
E ++ R +FI L+ + R+ DE LR+V + Q T P
Sbjct: 139 PVEKDDNNMPVTARVVFIFGPDKKLKLSILYPATTSRNFDEILRVVDSLQLTGTKPVATP 198
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + P + +++K+ F K
Sbjct: 199 VDWKKGESVMVVPTLSEEEAKQCFPK 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,653,222
Number of extensions: 964304
Number of successful extensions: 2405
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2397
Number of HSP's successfully gapped: 8
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [S... 389 e-108
Alignment gi|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [S... 386 e-107
Alignment gi|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [S... 386 e-107
Alignment gi|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [S... 386 e-107
Alignment gi|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [S... 386 e-107
Alignment gi|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa]. 317 5e-87
Alignment gi|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa]. 288 4e-78
Alignment gi|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide re... 267 8e-72
Alignment gi|NP_999573.1| peroxiredoxin-6 [Sus scrofa]. 84 1e-16
Alignment gi|XP_003130359.2| PREDICTED: peroxiredoxin-6-like [Sus scrofa]. 54 1e-07
>ref|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [Sus scrofa].
Length = 197
Score = 389 bits (1000), Expect = e-108
Identities = 192/199 (96%), Positives = 193/199 (96%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
ERAEEFKKLNCQVIGASVD + WINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK
Sbjct: 61 ERAEEFKKLNCQVIGASVD--LTSVIWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 118
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
Sbjct: 119 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 178
Query: 602 SDTIKPDVQKSKEYFSKQK 658
SDTIKPDVQKSKEYFSKQK
Sbjct: 179 SDTIKPDVQKSKEYFSKQK 197
>ref|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [Sus scrofa].
Length = 202
Score = 386 bits (991), Expect = e-107
Identities = 192/202 (95%), Positives = 193/202 (95%), Gaps = 3/202 (1%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSH---FCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 412
ERAEEFKKLNCQVIGASVD + WINTPKKQGGLGPMNIPLISDPKRTIAQDYG
Sbjct: 61 ERAEEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 120
Query: 413 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 592
VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW
Sbjct: 121 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 180
Query: 593 KPGSDTIKPDVQKSKEYFSKQK 658
KPGSDTIKPDVQKSKEYFSKQK
Sbjct: 181 KPGSDTIKPDVQKSKEYFSKQK 202
>ref|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [Sus scrofa].
Length = 202
Score = 386 bits (991), Expect = e-107
Identities = 192/202 (95%), Positives = 193/202 (95%), Gaps = 3/202 (1%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSH---FCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 412
ERAEEFKKLNCQVIGASVD + WINTPKKQGGLGPMNIPLISDPKRTIAQDYG
Sbjct: 61 ERAEEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 120
Query: 413 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 592
VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW
Sbjct: 121 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 180
Query: 593 KPGSDTIKPDVQKSKEYFSKQK 658
KPGSDTIKPDVQKSKEYFSKQK
Sbjct: 181 KPGSDTIKPDVQKSKEYFSKQK 202
>ref|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [Sus scrofa].
Length = 202
Score = 386 bits (991), Expect = e-107
Identities = 192/202 (95%), Positives = 193/202 (95%), Gaps = 3/202 (1%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSH---FCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 412
ERAEEFKKLNCQVIGASVD + WINTPKKQGGLGPMNIPLISDPKRTIAQDYG
Sbjct: 61 ERAEEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 120
Query: 413 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 592
VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW
Sbjct: 121 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 180
Query: 593 KPGSDTIKPDVQKSKEYFSKQK 658
KPGSDTIKPDVQKSKEYFSKQK
Sbjct: 181 KPGSDTIKPDVQKSKEYFSKQK 202
>ref|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [Sus scrofa].
Length = 202
Score = 386 bits (991), Expect = e-107
Identities = 192/202 (95%), Positives = 193/202 (95%), Gaps = 3/202 (1%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 242 ERAEEFKKLNCQVIGASVDSH---FCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 412
ERAEEFKKLNCQVIGASVD + WINTPKKQGGLGPMNIPLISDPKRTIAQDYG
Sbjct: 61 ERAEEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYG 120
Query: 413 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 592
VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW
Sbjct: 121 VLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGW 180
Query: 593 KPGSDTIKPDVQKSKEYFSKQK 658
KPGSDTIKPDVQKSKEYFSKQK
Sbjct: 181 KPGSDTIKPDVQKSKEYFSKQK 202
>ref|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa].
Length = 198
Score = 317 bits (813), Expect = 5e-87
Identities = 149/197 (75%), Positives = 174/197 (88%)
Frame = +2
Query: 62 MSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 241
M+SGNA IG AP F+ATAV+ +G FK++ LSDYKGKY+V FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MASGNAHIGKPAPEFQATAVV-NGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFS 59
Query: 242 ERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLK 421
+RAEEF +L C+V+G SVDS F HLAWINTP+K+GGLGP+ IPL++D R ++ DYGVLK
Sbjct: 60 DRAEEFHQLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLK 119
Query: 422 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 601
DEGI++RGLFIID KG+LRQIT+NDLPVGRSVDE LRLVQAFQ+TD+HGEVCPAGWKPG
Sbjct: 120 EDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG 179
Query: 602 SDTIKPDVQKSKEYFSK 652
SDTIKP+V SKEYFSK
Sbjct: 180 SDTIKPNVDDSKEYFSK 196
>ref|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa].
Length = 272
Score = 288 bits (736), Expect = 4e-78
Identities = 136/204 (66%), Positives = 165/204 (80%)
Frame = +2
Query: 41 LRTADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCP 220
L AD ++ AKI AP+++ TAV+ +G+FK++ L+DY+GKY+VFFFYPLDFTFVCP
Sbjct: 68 LSVADHSLHLSKAKISKPAPYWEGTAVI-NGEFKELKLTDYRGKYLVFFFYPLDFTFVCP 126
Query: 221 TEIIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIA 400
TEIIAF +R EEF+ +N +V+ SVDS F HLAWINTP++QGGLGP+ IPL+SD I+
Sbjct: 127 TEIIAFGDRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQIS 186
Query: 401 QDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVC 580
+DYGV D G + RGLFIIDDKGILRQIT+NDLPVGRSVDETLRLVQAFQ+TDKHGEVC
Sbjct: 187 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVC 246
Query: 581 PAGWKPGSDTIKPDVQKSKEYFSK 652
PAGWKPGS+TI PD +YF K
Sbjct: 247 PAGWKPGSETIIPDPAGKLKYFDK 270
>ref|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial
isoform 1 [Sus scrofa].
Length = 261
Score = 267 bits (682), Expect = 8e-72
Identities = 127/206 (61%), Positives = 158/206 (76%)
Frame = +2
Query: 35 FCLRTADSNMSSGNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFV 214
F T+ S+ S + AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFV
Sbjct: 57 FAFSTSSSHHSPA---VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFV 112
Query: 215 CPTEIIAFSERAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRT 394
CPTEIIAFS++A EF +NC+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD +
Sbjct: 113 CPTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQ 172
Query: 395 IAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGE 574
I++DYGVL G++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGE
Sbjct: 173 ISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGE 232
Query: 575 VCPAGWKPGSDTIKPDVQKSKEYFSK 652
VCPA W P S TIKP SKEYF K
Sbjct: 233 VCPANWTPDSPTIKPHPTDSKEYFEK 258
>ref|NP_999573.1| peroxiredoxin-6 [Sus scrofa].
Length = 224
Score = 84.0 bits (206), Expect = 1e-16
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 12/206 (5%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL- 418
EF K N ++I S+DS HLAW G P + P+I D R +A G+L
Sbjct: 59 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 118
Query: 419 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 583
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 119 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 178
Query: 584 AGWKPG-SDTIKPDV--QKSKEYFSK 652
WK G S + P++ +++K+ F K
Sbjct: 179 VDWKNGDSVMVLPNIPEEEAKKLFPK 204
>ref|XP_003130359.2| PREDICTED: peroxiredoxin-6-like [Sus scrofa].
Length = 96
Score = 53.9 bits (128), Expect = 1e-07
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +2
Query: 71 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 250
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 3 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 58
Query: 251 EEFKKLNCQVIGASVDSHFCHLAW 322
EF K N ++I S+DS HLAW
Sbjct: 59 PEFAKRNVKMIALSIDSVEDHLAW 82
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,762,066
Number of extensions: 763449
Number of successful extensions: 1836
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1826
Number of HSP's successfully gapped: 10
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002420
(1008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 692 0.0
Sscrofa_Chr03 172 2e-40
Sscrofa_Chr02 117 1e-23
>Sscrofa_Chr06
|| Length = 157765593
Score = 692 bits (349), Expect = 0.0
Identities = 352/353 (99%)
Strand = Plus / Plus
Query: 574 agtgtgcccggctggttggaagcctggcagtgataccatcaagcctgatgtccagaagag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265593 agtgtgcccggctggttggaagcctggcagtgataccatcaagcctgatgtccagaagag 153265652
Query: 634 caaagaatatttctctaaacagaagtgagcgctgggccatctcagggccaggcggcagtg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265653 caaagaatatttctctaaacagaagtgagcgctgggccatctcagggccaggcggcagtg 153265712
Query: 694 ggtgtccatgagaacaacgtcttttgtactattgtcatgcttaaaacacaagaccttata 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265713 ggtgtccatgagaacaacgtcttttgtactattgtcatgcttaaaacacaagaccttata 153265772
Query: 754 ctcagctcagatgtgtgggacaggacaggcctttcttgcaggggttagggaggccagact 813
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265773 ctcagctcaggtgtgtgggacaggacaggcctttcttgcaggggttagggaggccagact 153265832
Query: 814 tttcttcctcgggaggaaatggcctgcgctttaattacgtggcaggccaactggtgtgtc 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265833 tttcttcctcgggaggaaatggcctgcgctttaattacgtggcaggccaactggtgtgtc 153265892
Query: 874 agtagcagggtttcacttttgaccttttgtagttcctattaaacctgaactga 926
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153265893 agtagcagggtttcacttttgaccttttgtagttcctattaaacctgaactga 153265945
Score = 287 bits (145), Expect = 6e-75
Identities = 152/153 (99%), Gaps = 1/153 (0%)
Strand = Plus / Plus
Query: 166 aggaaaatacgtggtgttcttcttttacccacttgacttcacctttgtgtgccccacgga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153257436 aggaaaatacgtggtgttcttcttttacccacttgacttcacctttgtgtgccccacgga 153257495
Query: 226 gatcattgctttcagtgagagggcagaagaatttaagaaactcaactgccaagtgattgg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153257496 gatcattgctttcagtgagagggcagaagaatttaagaaactcaactgccaagtgattgg 153257555
Query: 286 tgcttctgtggattctcacttctgtcatctggc 318
|||||||||||| ||||||||||||||||||||
Sbjct: 153257556 tgcttctgtgga-tctcacttctgtcatctggc 153257587
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 443 aggggcctttttatcattgacgataaaggtattcttcgacagatcaccataaatgacctt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153258362 aggggcctttttatcattgacgataaaggtattcttcgacagatcaccataaatgacctt 153258421
Query: 503 cctgttggccgctccgtggatgagactctgagactagttcaggccttccagttcactgat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153258422 cctgttggccgctccgtggatgagactctgagactagttcaggccttccagttcactgat 153258481
Query: 563 aaacatggggaag 575
|||||||||||||
Sbjct: 153258482 aaacatggggaag 153258494
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 321 ggatcaacacccccaagaagcaaggaggactgggacccatgaacattcccttgatatcag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153257930 ggatcaacacccccaagaagcaaggaggactgggacccatgaacattcccttgatatcag 153257989
Query: 381 accccaagcgcaccattgcgcaggactacggggtcttgaaggccgacgaaggcatctcat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153257990 accccaagcgcaccattgcgcaggactacggggtcttgaaggccgacgaaggcatctcat 153258049
Query: 441 tcagg 445
|||||
Sbjct: 153258050 tcagg 153258054
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 50 gctgatagcaatatgtcttcaggaaatgccaaaattgggcaccgtgccccccacttcaaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153255627 gctgatagcaatatgtcttcaggaaatgccaaaattgggcaccgtgccccccacttcaaa 153255686
Query: 110 gcaactgctgttatgccagatggtcagttcaaagatatcagcctatctgactacaaagg 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153255687 gcaactgctgttatgccagatggtcagttcaaagatatcagcctatctgactacaaagg 153255745
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 6 gtgtctgcttcctggctgcgctcggtggcttctgcttgaggactg 50
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153253916 gtgtctgcttcctggctgcgctcggtggcttctgcttgaggactg 153253960
>Sscrofa_Chr03
|| Length = 144787322
Score = 172 bits (87), Expect = 2e-40
Identities = 370/458 (80%), Gaps = 11/458 (2%)
Strand = Plus / Plus
Query: 56 agcaatatgtcttcaggaaatgccaaaattgggcaccgtgccccccacttcaaagcaact 115
||||||| ||||||| ||| |||||||||||||| ||| |||| ||||||||||||
Sbjct: 131176975 agcaatacatcttcagaaaacaccaaaattgggcactgtgtcccc-acttcaaagcaatg 131177033
Query: 116 gctgttatg-ccagatggtcagttcaaagatatcagcctatctgactacaaaggaaaata 174
||||||||| |||| ||| ||| |||||||| |||| | |||||||||||||||||||||
Sbjct: 131177034 gctgttatggccag-tggacagctcaaagatgtcagtccatctgactacaaaggaaaata 131177092
Query: 175 cgtggtgttcttcttttacccacttgacttcacctttgtgtgccccacggagatcattgc 234
| | ||||||||||| | |||| |||| |||||| |||| || | |||||| ||
Sbjct: 131177093 tattgcattcttcttttatactcttggcttctcctttgggtgctccgtgaagatcagcgc 131177152
Query: 235 tttcagtgagagggcagaagaatttaagaaactcaactgccaagtgattggtgcttctgt 294
||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131177153 ttttcgtgataggacagaaaaatttaagaaactcaactgccaagtgattggtgcttctgt 131177212
Query: 295 ggattctcacttctgtcatctggcctggatcaacacccccaagaagcaaggaggactggg 354
||||||||||||| ||||| | |||||| || | |||||| |||||||||| ||
Sbjct: 131177213 ggattctcacttc------ctggcatagatcaatacacgcaagaa-caaggaggac-agg 131177264
Query: 355 acccatgaacattcccttgatatcagaccccaagcgcaccattgcgcaggactacggggt 414
|||| |||| | |||| | | ||||||||||| | ||||| ||| ||||||||| |||
Sbjct: 131177265 acccgtgaagaccccctgggtctcagaccccaaacacaccactgctcaggactactaggt 131177324
Query: 415 cttgaaggccgacgaaggcatctcattcaggggcctttttatcattgacgataaaggtat 474
|| |||| || |||||| | ||| ||||||| | ||| || ||||| ||||||| |
Sbjct: 131177325 attaaaggttgatgaaggcctttcactcaggggacatttaattattgatgataaagatgc 131177384
Query: 475 tcttcgacagatcaccataaatgaccttcctgttggcc 512
||| || |||||| |||||||||||| | ||||||||
Sbjct: 131177385 cctttgaaagatcatcataaatgacctccttgttggcc 131177422
Score = 97.6 bits (49), Expect = 1e-17
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 622 tgtccagaagagcaaagaatatttctctaaacagaagtgagcgctgggccatctcagggc 681
|||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||
Sbjct: 131177507 tgtccagaagagcaaagaatatttctctaagcagaagtgagtgctgggccattttagggc 131177566
Query: 682 caggc 686
|||||
Sbjct: 131177567 caggc 131177571
>Sscrofa_Chr02
|| Length = 162569375
Score = 117 bits (59), Expect = 1e-23
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 713 tcttttgtactattgtcatgcttaaaacacaagaccttatactcagctcagatgtgtggg 772
|||| ||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||
Sbjct: 60277528 tcttctgtactattgtcatgcttaaaactcaggaccttacacttagctcagatgtgtggg 60277587
Query: 773 acaggacaggcctttcttgcagg 795
||||||||||||| |||||||||
Sbjct: 60277588 acaggacaggcctctcttgcagg 60277610
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 203 ttcacctttgtgtgccccacggagatcattgctttcag 240
||||||||||||||||||||||||||||| ||||||||
Sbjct: 66512443 ttcacctttgtgtgccccacggagatcatcgctttcag 66512406
Score = 63.9 bits (32), Expect = 2e-07
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 440 ttcaggggcctttttatcattgacgataaaggtattcttcgacagatcaccataaatgac 499
|||||||||||||||||||| || | || ||| | ||||| |||||||| | |||||
Sbjct: 66511545 ttcaggggcctttttatcatcgatggcaagggtgtccttcgccagatcactgtcaatgat 66511486
Query: 500 cttcctgttggccgctccgtggatgagactctgagactagttcaggccttccagttcact 559
| ||||| || ||||| ||||||||| ||||||| || || ||||||||||||| |||
Sbjct: 66511485 ttgcctgtgggacgctctgtggatgaggctctgaggctggtccaggccttccagtacaca 66511426
Query: 560 gataaacatggggaag 575
|| | ||||||||||
Sbjct: 66511425 gacgagcatggggaag 66511410
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,707,725
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 11
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)