Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098949.1| ribosomal RNA processing protein 36 homolog ... 349 3e-96
>ref|NP_001098949.1| ribosomal RNA processing protein 36 homolog [Bos taurus].
Length = 246
Score = 349 bits (895), Expect = 3e-96
Identities = 187/246 (76%), Positives = 190/246 (77%)
Frame = +3
Query: 291 MPRVSSRNGLAAASPHGAWDGEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNS 470
M R SS G A SP A DG ED G LRN TS MSFEELLELQSQVGTK YKQLVTG+S
Sbjct: 1 MRRASSCGGAVAGSPSEAQDGGEDDGSLRNDTSHMSFEELLELQSQVGTKAYKQLVTGSS 60
Query: 471 TKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 650
TKKQSSRPPVQK CVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV
Sbjct: 61 TKKQSSRPPVQKGCVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 120
Query: 651 FDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMXXXXXXXXXXXXX 830
FDKTYQFL+DIRAREKELVKKQLKK RSGEEHEKLQ LLQRMEQQ+M
Sbjct: 121 FDKTYQFLDDIRAREKELVKKQLKKHRSGEEHEKLQHLLQRMEQQEMAQKERKRQQELRL 180
Query: 831 XXXXXXXXXXXXGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSXXXXXXXXXXXXH 1010
GHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLS H
Sbjct: 181 ALKQERRAQAQQGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRH 240
Query: 1011 LPLSKE 1028
LPLSKE
Sbjct: 241 LPLSKE 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,376,250
Number of extensions: 1309850
Number of successful extensions: 6112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6047
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865349.1| PREDICTED: similar to CG8461-PA isoform 10 [Can... 342 4e-94
Alignment gi|XP_852194.1| PREDICTED: similar to kelch domain containing 3... 313 2e-85
Alignment gi|XP_865333.1| PREDICTED: similar to CG8461-PA isoform 9 [Cani... 225 8e-59
>ref|XP_865349.1| PREDICTED: similar to CG8461-PA isoform 10 [Canis familiaris].
Length = 246
Score = 342 bits (877), Expect = 4e-94
Identities = 182/246 (73%), Positives = 190/246 (77%)
Frame = +3
Query: 291 MPRVSSRNGLAAASPHGAWDGEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNS 470
MPR SSR AA SP GA ED GGLR TSDMSFEELLELQSQVGTKTYK+LV GNS
Sbjct: 1 MPRASSRAPAAAGSPRGARVCGEDSGGLRKDTSDMSFEELLELQSQVGTKTYKRLVAGNS 60
Query: 471 TKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 650
+KK+ SRP VQ ACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV
Sbjct: 61 SKKEGSRPRVQNACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 120
Query: 651 FDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMXXXXXXXXXXXXX 830
FDKTY+FLNDIRA+EKELVKKQLKK SG+EHEKLQQLLQRMEQQ+M
Sbjct: 121 FDKTYEFLNDIRAKEKELVKKQLKKHHSGQEHEKLQQLLQRMEQQEMAQQERRRQQELRL 180
Query: 831 XXXXXXXXXXXXGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSXXXXXXXXXXXXH 1010
GHRPYFLKKSEQRQLVLAEKFKELKRSK+LESFLS H
Sbjct: 181 ALKQEQRARAQQGHRPYFLKKSEQRQLVLAEKFKELKRSKRLESFLSRKRRRNAGKDRRH 240
Query: 1011 LPLSKE 1028
LPLSKE
Sbjct: 241 LPLSKE 246
>ref|XP_852194.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3
[Canis familiaris].
Length = 550
Score = 313 bits (803), Expect = 2e-85
Identities = 164/215 (76%), Positives = 172/215 (80%)
Frame = +3
Query: 384 TSDMSFEELLELQSQVGTKTYKQLVTGNSTKKQSSRPPVQKACVADKHRPLEMSAKVRVP 563
TSDMSFEELLELQSQVGTKTYK+LV GNS+KK+ SRP VQ ACVADKHRPLEMSAKVRVP
Sbjct: 336 TSDMSFEELLELQSQVGTKTYKRLVAGNSSKKEGSRPRVQNACVADKHRPLEMSAKVRVP 395
Query: 564 FLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAREKELVKKQLKKRRSGEE 743
FLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTY+FLNDIRA+EKELVKKQLKK SG+E
Sbjct: 396 FLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYEFLNDIRAKEKELVKKQLKKHHSGQE 455
Query: 744 HEKLQQLLQRMEQQDMXXXXXXXXXXXXXXXXXXXXXXXXXGHRPYFLKKSEQRQLVLAE 923
HEKLQQLLQRMEQQ+M GHRPYFLKKSEQRQLVLAE
Sbjct: 456 HEKLQQLLQRMEQQEMAQQERRRQQELRLALKQEQRARAQQGHRPYFLKKSEQRQLVLAE 515
Query: 924 KFKELKRSKKLESFLSXXXXXXXXXXXXHLPLSKE 1028
KFKELKRSK+LESFLS HLPLSKE
Sbjct: 516 KFKELKRSKRLESFLSRKRRRNAGKDRRHLPLSKE 550
>ref|XP_865333.1| PREDICTED: similar to CG8461-PA isoform 9 [Canis familiaris].
Length = 163
Score = 225 bits (573), Expect = 8e-59
Identities = 119/163 (73%), Positives = 124/163 (76%)
Frame = +3
Query: 540 MSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAREKELVKKQL 719
MSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTY+FLNDIRA+EKELVKKQL
Sbjct: 1 MSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYEFLNDIRAKEKELVKKQL 60
Query: 720 KKRRSGEEHEKLQQLLQRMEQQDMXXXXXXXXXXXXXXXXXXXXXXXXXGHRPYFLKKSE 899
KK SG+EHEKLQQLLQRMEQQ+M GHRPYFLKKSE
Sbjct: 61 KKHHSGQEHEKLQQLLQRMEQQEMAQQERRRQQELRLALKQEQRARAQQGHRPYFLKKSE 120
Query: 900 QRQLVLAEKFKELKRSKKLESFLSXXXXXXXXXXXXHLPLSKE 1028
QRQLVLAEKFKELKRSK+LESFLS HLPLSKE
Sbjct: 121 QRQLVLAEKFKELKRSKRLESFLSRKRRRNAGKDRRHLPLSKE 163
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,186,874
Number of extensions: 1345017
Number of successful extensions: 6107
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6055
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149103.1| ribosomal RNA processing protein 36 homolog [Ho... 336 2e-92
>ref|NP_149103.1| ribosomal RNA processing protein 36 homolog [Homo sapiens].
Length = 259
Score = 336 bits (862), Expect = 2e-92
Identities = 180/253 (71%), Positives = 188/253 (74%), Gaps = 9/253 (3%)
Frame = +3
Query: 297 RVSSRNGLAAASPHGAWDGEEDGGGLR---------NGTSDMSFEELLELQSQVGTKTYK 449
R + G A P GA D EEDGGGL GTS+MSFEELLELQSQVGTKTYK
Sbjct: 7 RAGAGAGAGARRPRGARDREEDGGGLEPAAVARDLLRGTSNMSFEELLELQSQVGTKTYK 66
Query: 450 QLVTGNSTKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLS 629
QLV GNS KKQ+SRPP+Q ACVADKHRPLEMSAK+RVPFLRQVVPISKKVARDPRFDDLS
Sbjct: 67 QLVAGNSPKKQASRPPIQNACVADKHRPLEMSAKIRVPFLRQVVPISKKVARDPRFDDLS 126
Query: 630 GEYNPEVFDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMXXXXXX 809
GEYNPEVFDKTYQFLNDIRA+EKELVKKQLKK SGEEHEKLQQLLQRMEQQ+M
Sbjct: 127 GEYNPEVFDKTYQFLNDIRAKEKELVKKQLKKHLSGEEHEKLQQLLQRMEQQEMAQQERK 186
Query: 810 XXXXXXXXXXXXXXXXXXXGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSXXXXXX 989
GHRPYFLKKSEQRQL LAEKFKELKRSKKLE+FLS
Sbjct: 187 QQQELHLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELKRSKKLENFLSRKRRRN 246
Query: 990 XXXXXXHLPLSKE 1028
HLPLSKE
Sbjct: 247 AGKDRRHLPLSKE 259
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,309,015
Number of extensions: 1313852
Number of successful extensions: 5891
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5840
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659106.1| ribosomal RNA processing protein 36 homolog [Mu... 291 6e-79
>ref|NP_659106.1| ribosomal RNA processing protein 36 homolog [Mus musculus].
Length = 226
Score = 291 bits (746), Expect = 6e-79
Identities = 157/226 (69%), Positives = 168/226 (74%)
Frame = +3
Query: 351 GEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNSTKKQSSRPPVQKACVADKHR 530
GE G L+ TSDMSFEELL LQ Q K +KQLV GNST+ +S + PV CVADKHR
Sbjct: 4 GEVTGDRLKADTSDMSFEELLRLQGQGRPKAHKQLVAGNSTRTRSPQQPV---CVADKHR 60
Query: 531 PLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAREKELVK 710
PLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSG+YNPEVFDKTYQFLNDIRA+EK+LVK
Sbjct: 61 PLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGDYNPEVFDKTYQFLNDIRAKEKQLVK 120
Query: 711 KQLKKRRSGEEHEKLQQLLQRMEQQDMXXXXXXXXXXXXXXXXXXXXXXXXXGHRPYFLK 890
KQLKK RSGEEH+KLQQLLQRMEQQ+M GHRPYFLK
Sbjct: 121 KQLKKHRSGEEHDKLQQLLQRMEQQEMAQQERKQQQELRLALKQERRAQAQQGHRPYFLK 180
Query: 891 KSEQRQLVLAEKFKELKRSKKLESFLSXXXXXXXXXXXXHLPLSKE 1028
KSEQRQL LAEKFKEL+RSKKLESFLS HLPLSKE
Sbjct: 181 KSEQRQLALAEKFKELRRSKKLESFLSRKRRRNAGKDRRHLPLSKE 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,120,567
Number of extensions: 1088727
Number of successful extensions: 4706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116562.1| hypothetical protein LOC100141407 [Sus scrof... 402 e-112
>ref|NP_001116562.1| hypothetical protein LOC100141407 [Sus scrofa].
Length = 246
Score = 402 bits (1032), Expect = e-112
Identities = 209/246 (84%), Positives = 209/246 (84%)
Frame = +3
Query: 291 MPRVSSRNGLAAASPHGAWDGEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNS 470
MPRVSSRNGLAAASPHGAWDGEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNS
Sbjct: 1 MPRVSSRNGLAAASPHGAWDGEEDGGGLRNGTSDMSFEELLELQSQVGTKTYKQLVTGNS 60
Query: 471 TKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 650
TKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV
Sbjct: 61 TKKQSSRPPVQKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEV 120
Query: 651 FDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMXXXXXXXXXXXXX 830
FDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDM
Sbjct: 121 FDKTYQFLNDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMAQQERKRQQELRL 180
Query: 831 XXXXXXXXXXXXGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSXXXXXXXXXXXXH 1010
GHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLS H
Sbjct: 181 ALKQERRAQAQQGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRH 240
Query: 1011 LPLSKE 1028
LPLSKE
Sbjct: 241 LPLSKE 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,280,448
Number of extensions: 845644
Number of successful extensions: 3953
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3927
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002426
(1268 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 733 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 733 bits (370), Expect = 0.0
Identities = 379/382 (99%)
Strand = Plus / Plus
Query: 1 gtaccaacacagcctggcttcagtttctcttcagtgctaagtcaatgccttgcgacagac 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 43535628 gtaccaacacagcctggctttagtttctcttcagtgctaagtcaatgccttgcgacagac 43535687
Query: 61 gaaaagttggtgacgttttcgcaactgggtgcccttttctgctgtaggagggttcccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 43535688 gaaaagttggtgacgttttcgcaactgggtgcccttttctgctgtaggagggttcccagg 43535747
Query: 121 tggcccgcggggctgccgggccagcctaccccagccttttggctcggcagtgggcgggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535748 tggcccgcggggctgccgggccagcctaccccagccttttggctcggcagtgggcgggat 43535807
Query: 181 caactctgacgtcgccaagccgcgtggactcggcctacggaaatgcaggaaggggcgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535808 caactctgacgtcgccaagccgcgtggactcggcctacggaaatgcaggaaggggcgggg 43535867
Query: 241 ctgccagggcggaagtagtgccattagtctttggctctacgcagaagccaatgccgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535868 ctgccagggcggaagtagtgccattagtctttggctctacgcagaagccaatgccgagag 43535927
Query: 301 taagctcccggaatgggttggctgccgcgtctccccacggggcctgggatggcgaggagg 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535928 tgagctcccggaatgggttggctgccgcgtctccccacggggcctgggatggcgaggagg 43535987
Query: 361 acggcgggggcctgcggaatgg 382
||||||||||||||||||||||
Sbjct: 43535988 acggcgggggcctgcggaatgg 43536009
Score = 654 bits (330), Expect = 0.0
Identities = 363/374 (97%)
Strand = Plus / Plus
Query: 895 ctgagcagcgccagttggtcctagctgagaagttcaaggagctgaaacgcagcaagaagc 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43540790 ctgagcagcgccagttggtcctagctgagaagttcaaggagctgaaacgcagcaagaagc 43540849
Query: 955 tcgagagcttcttgagtcgaaagagacgccgaaatgcaggcaaggacagaagacatctcc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43540850 tcgagagcttcttgagtcgaaagagacgccgaaatgcaggcaaggacagaagacatctcc 43540909
Query: 1015 ctttgagcaaagagtaataagaaaatgtcctcagctcttctgctgccccagcaagaaatg 1074
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 43540910 ctttgagcaaagagtaataagaaaacgtcctcagctcttctgctgccccagcaagaaatg 43540969
Query: 1075 cagctcccgggacacatttgggctgggcctgttctggtcctttcccactcaagggcaagg 1134
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 43540970 cagctcccgggacacatttgggctgggtctcttctggtcctttcccactcaagggcaagg 43541029
Query: 1135 ctcacagctgccttggaactagattggctcaaagatgactgaaagggtctgggctgcccc 1194
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 43541030 ctcacagctgccttggaactagattggctcagagatgactgagagggtctgggctgcccc 43541089
Query: 1195 agggctggacgaaaaaagcagttcagctttgtgcccgcacgcacttcctctccttggacc 1254
|||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 43541090 agggctggacgagaagagcagttcagccttgtgccgcaacgcacttcctctccttggacc 43541149
Query: 1255 tggttcaccgtgtc 1268
||||||||||||||
Sbjct: 43541150 tggttcaccgtgtc 43541163
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 381 ggcacttctgacatgtcatttgaggagctgttggaattgcagagccaagtggggactaag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43539242 ggcacttctgacatgtcatttgaggagctgttggaattgcagagccaagtggggactaag 43539301
Query: 441 acatacaaacaattggtaactggaaacagcactaagaagcaaagttctagaccacctgtc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43539302 acatacaaacaattggtaactggaaacagcactaagaagcaaagttctagaccacctgtc 43539361
Query: 501 cagaaagcatgtgtggccgataagcacagg 530
||||||||||||||||||||||||||||||
Sbjct: 43539362 cagaaagcatgtgtggccgataagcacagg 43539391
Score = 238 bits (120), Expect = 6e-60
Identities = 123/124 (99%)
Strand = Plus / Plus
Query: 776 ggagcagcaagacatggcacagcaggagcgaaagcggcagcaggagctgcgcctggccct 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43540259 ggagcagcaagacatggcacagcaggagcgaaagcggcagcaggagctgcgcctggccct 43540318
Query: 836 gaagcaggagcggcgggctcaggcccagcagggccatcggccatacttcctgaagaaatc 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43540319 gaagcaggagcggcgggctcaggcccagcagggccatcggccatacttcctgaagaaatg 43540378
Query: 896 tgag 899
||||
Sbjct: 43540379 tgag 43540382
Score = 206 bits (104), Expect = 2e-50
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 594 aaggtagcccgcgacccgcgctttgatgatctgtcaggggaatataatcctgaggtgttt 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43539663 aaggtagcccgcgacccacgctttgatgatctgtcaggggaatataatcctgaggtgttt 43539722
Query: 654 gataaaacgtatcagttcctaaatgacatccgagccagagagaaagag 701
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43539723 gataaaacgtatcagttcctaaatgacatccgagccagagagaaagag 43539770
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 699 gagcttgtgaaaaaacagttgaagaagcgccgctcaggggaggagcatgagaaactgcag 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43540052 gagcttgtgaaaaaacagttgaagaagcgccgctcaggggaggagcatgagaaactgcag 43540111
Query: 759 cagctgcttcagcgcatgg 777
|||||||||||||||||||
Sbjct: 43540112 cagctgcttcagcgcatgg 43540130
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 528 aggcctctggaaatgtcagccaaggtccgtgtgccatttttgcgtcaagttgtccccatc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43539519 aggcctctggaaatgtcagccaaggtccgtgtgccatttttgcgtcaagttgtccccatc 43539578
Query: 588 agtaagaaggt 598
|||||||||||
Sbjct: 43539579 agtaagaaggt 43539589
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,341,728
Number of extensions: 228
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 7
Length of query: 1268
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1247
Effective length of database: 2,808,413,156
Effective search space: 3502091205532
Effective search space used: 3502091205532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)