Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179665.1| alpha-galactosidase A [Bos taurus]. 665 0.0
Alignment gi|XP_002699865.1| PREDICTED: alpha-galactosidase A-like [Bos t... 665 0.0
Alignment gi|NP_001039814.1| alpha-N-acetylgalactosaminidase precursor [B... 370 e-102
Alignment gi|XP_002707955.1| PREDICTED: alpha-galactosidase A-like [Bos t... 257 1e-68
>ref|NP_001179665.1| alpha-galactosidase A [Bos taurus].
Length = 439
Score = 665 bits (1715), Expect = 0.0
Identities = 308/360 (85%), Positives = 336/360 (93%)
Frame = +1
Query: 295 VMTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVD 474
+MTATMKPVSRV RLG VL FCF V +G+P A L+NGLA TPTMGWLHWERFMCNV+
Sbjct: 1 MMTATMKPVSRVLRLGCVLAFCFQVLVPYGLPRAWGLDNGLAMTPTMGWLHWERFMCNVN 60
Query: 475 CQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPG 654
CQE+PDSCISEKLF QIAE+MASDGWKD GYEY+CIDDCWMAP+RDS+GRLQADPKRFPG
Sbjct: 61 CQEEPDSCISEKLFLQIAEIMASDGWKDVGYEYICIDDCWMAPERDSKGRLQADPKRFPG 120
Query: 655 GIRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCD 834
GI RLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCD
Sbjct: 121 GIHRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCD 180
Query: 835 SVKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDS 1014
S++HLA+GYKQMSLALNRTGRSIVYSCEWPLY+ P FKPNYTEIREYCNHWRNFADIYDS
Sbjct: 181 SIQHLAEGYKQMSLALNRTGRSIVYSCEWPLYVWPIFKPNYTEIREYCNHWRNFADIYDS 240
Query: 1015 WQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLL 1194
W+SI+ LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNFGLS +Q++TQMALWAIMAAPLL
Sbjct: 241 WESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNFGLSRDQQITQMALWAIMAAPLL 300
Query: 1195 MSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
MSNDLRHISP+AKALLQDKDVIAIN D LGKQG+ LRK+ +FE+WERPLLNLAWAVA+VN
Sbjct: 301 MSNDLRHISPEAKALLQDKDVIAINQDRLGKQGYWLRKEDNFEMWERPLLNLAWAVAIVN 360
>ref|XP_002699865.1| PREDICTED: alpha-galactosidase A-like [Bos taurus].
Length = 439
Score = 665 bits (1715), Expect = 0.0
Identities = 308/360 (85%), Positives = 336/360 (93%)
Frame = +1
Query: 295 VMTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVD 474
+MTATMKPVSRV RLG VL FCF V +G+P A L+NGLA TPTMGWLHWERFMCNV+
Sbjct: 1 MMTATMKPVSRVLRLGCVLAFCFQVLVPYGLPRAWGLDNGLAMTPTMGWLHWERFMCNVN 60
Query: 475 CQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPG 654
CQE+PDSCISEKLF QIAE+MASDGWKD GYEY+CIDDCWMAP+RDS+GRLQADPKRFPG
Sbjct: 61 CQEEPDSCISEKLFLQIAEIMASDGWKDVGYEYICIDDCWMAPERDSKGRLQADPKRFPG 120
Query: 655 GIRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCD 834
GI RLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCD
Sbjct: 121 GIHRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCD 180
Query: 835 SVKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDS 1014
S++HLA+GYKQMSLALNRTGRSIVYSCEWPLY+ P FKPNYTEIREYCNHWRNFADIYDS
Sbjct: 181 SIQHLAEGYKQMSLALNRTGRSIVYSCEWPLYVWPIFKPNYTEIREYCNHWRNFADIYDS 240
Query: 1015 WQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLL 1194
W+SI+ LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNFGLS +Q++TQMALWAIMAAPLL
Sbjct: 241 WESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNFGLSRDQQITQMALWAIMAAPLL 300
Query: 1195 MSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
MSNDLRHISP+AKALLQDKDVIAIN D LGKQG+ LRK+ +FE+WERPLLNLAWAVA+VN
Sbjct: 301 MSNDLRHISPEAKALLQDKDVIAINQDRLGKQGYWLRKEDNFEMWERPLLNLAWAVAIVN 360
>ref|NP_001039814.1| alpha-N-acetylgalactosaminidase precursor [Bos taurus].
Length = 411
Score = 370 bits (949), Expect = e-102
Identities = 183/325 (56%), Positives = 230/325 (70%), Gaps = 5/325 (1%)
Frame = +1
Query: 403 LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
L NGL R P MGWL WERF CN+DC EDP +CISE+LF ++A+ +A DGW+D GY YL I
Sbjct: 18 LENGLLRKPPMGWLAWERFRCNIDCSEDPKNCISEQLFMEMADRLAQDGWRDLGYVYLNI 77
Query: 583 DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
DDCW+ RD++G L D KRFP GI LADY HS GLKLGIY D+GN TC G+PG+
Sbjct: 78 DDCWIGG-RDAKGNLVPDRKRFPHGIAFLADYAHSLGLKLGIYEDLGNFTCMGYPGTTLD 136
Query: 760 YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
DA+TFAEW VD+LK DGCY + + A+GY +M+ ALN TGR I +SC WP Y
Sbjct: 137 KVVQDAQTFAEWKVDMLKLDGCY-STPQERAEGYPKMAAALNATGRPIAFSCSWPAYEGG 195
Query: 931 MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
+ P K NYT + + CN WRNF DI DSW+S+ ++LDW ++Q+ + P+AGPG WNDPDM
Sbjct: 196 LPP--KVNYTLLADICNLWRNFDDIQDSWRSVLSVLDWFVTHQDVLQPIAGPGHWNDPDM 253
Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
L+IGNFGLS+ Q QMALW ++AAPL MS DLR IS + +LQ+ +I IN DPLG Q
Sbjct: 254 LLIGNFGLSFEQAQAQMALWTVLAAPLFMSTDLRTISAQNMDILQNPLMIKINQDPLGIQ 313
Query: 1291 GHRLRKD-XHFEVWERPLLNLAWAV 1362
G R+ K+ H EV+ RPL + A A+
Sbjct: 314 GRRILKEKSHIEVYLRPLASEASAI 338
>ref|XP_002707955.1| PREDICTED: alpha-galactosidase A-like [Bos taurus].
Length = 226
Score = 257 bits (657), Expect = 1e-68
Identities = 120/142 (84%), Positives = 132/142 (92%)
Frame = +1
Query: 949 PNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNF 1128
PNYTEIREYCNHWRNFADIYDSW+SI+ LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNF
Sbjct: 6 PNYTEIREYCNHWRNFADIYDSWESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNF 65
Query: 1129 GLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRK 1308
GLS +Q++TQMALWAIMAAPLLMSNDLRHISP+AKALL DKDVIAIN D LGKQG+ L K
Sbjct: 66 GLSRDQQITQMALWAIMAAPLLMSNDLRHISPEAKALLHDKDVIAINQDRLGKQGYWLTK 125
Query: 1309 DXHFEVWERPLLNLAWAVAMVN 1374
+ +FE+WERPLLNLAWAVA+VN
Sbjct: 126 EDNFEMWERPLLNLAWAVAIVN 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,023,562
Number of extensions: 1535286
Number of successful extensions: 4315
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4301
Number of HSP's successfully gapped: 4
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538109.2| PREDICTED: similar to Alpha-galactosidase A pre... 646 0.0
Alignment gi|XP_538347.2| PREDICTED: similar to Alpha-N-acetylgalactosami... 370 e-102
>ref|XP_538109.2| PREDICTED: similar to Alpha-galactosidase A precursor (Melibiase)
(Alpha-D-galactoside galactohydrolase)
(Alpha-D-galactosidase A) (Agalsidase alfa) [Canis
familiaris].
Length = 420
Score = 646 bits (1666), Expect = 0.0
Identities = 299/355 (84%), Positives = 330/355 (92%)
Frame = +1
Query: 310 MKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDP 489
MK S++ + ++L FLA VLW VPGARAL+NGLA TPTMGWLHWERFMCNVDCQE+P
Sbjct: 1 MKLKSQLLQPCFLLALRFLALVLWSVPGARALDNGLAMTPTMGWLHWERFMCNVDCQEEP 60
Query: 490 DSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRL 669
DSCISEKLF Q+AELM SDGWKDAGY+YLCIDDCWMAPKRDS+GRLQADPKRFP GI+ L
Sbjct: 61 DSCISEKLFMQMAELMDSDGWKDAGYKYLCIDDCWMAPKRDSKGRLQADPKRFPNGIQSL 120
Query: 670 ADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHL 849
A+YVHSKGLKLGIYADVGNKTCAGFPGSFG+YDIDAKTFA+WGVDLLKFDGCYCDSV+HL
Sbjct: 121 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGHYDIDAKTFADWGVDLLKFDGCYCDSVEHL 180
Query: 850 ADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIK 1029
+GYK+MSLALNRTGRSIVYSCEWPLYM PF +PNYTEIR+YCNHWRNF D+YDSWQSIK
Sbjct: 181 ENGYKRMSLALNRTGRSIVYSCEWPLYMWPFHEPNYTEIRQYCNHWRNFQDVYDSWQSIK 240
Query: 1030 NILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDL 1209
+IL WTSSNQ++IV VAGPGGWNDPDMLVIGNFGLSW+Q+VTQMALWAIMAAPLLMSNDL
Sbjct: 241 SILAWTSSNQKRIVHVAGPGGWNDPDMLVIGNFGLSWDQQVTQMALWAIMAAPLLMSNDL 300
Query: 1210 RHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
RHISP+AKALLQ+KDVIAIN DPLGKQG+RLRK+ + EVWERPL +LAWAVAMVN
Sbjct: 301 RHISPQAKALLQNKDVIAINQDPLGKQGYRLRKEDNIEVWERPLTDLAWAVAMVN 355
>ref|XP_538347.2| PREDICTED: similar to Alpha-N-acetylgalactosaminidase precursor
(Alpha-galactosidase B) [Canis familiaris].
Length = 411
Score = 370 bits (951), Expect = e-102
Identities = 192/344 (55%), Positives = 234/344 (68%), Gaps = 5/344 (1%)
Frame = +1
Query: 346 VLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQI 525
V+ +AQVL L NGL R P MGWL WERF CN DC EDP +CISE+LF ++
Sbjct: 6 VVLLALVAQVL-------VLENGLLRKPPMGWLAWERFRCNTDCDEDPKNCISERLFLEM 58
Query: 526 AELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLG 705
A+ +A DGW+D GY YL IDDCW+ RD++G L DPKRFP GI LADY HS GLKLG
Sbjct: 59 ADHLAQDGWRDLGYTYLNIDDCWIGG-RDAKGHLIPDPKRFPNGIAFLADYAHSLGLKLG 117
Query: 706 IYADVGNKTCAGFPGSFGYYDI-DAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLAL 882
IY D+GN TC G+PG+ I DA+TFAEW VD+LK DGC+ + + A GY M+ AL
Sbjct: 118 IYEDMGNFTCMGYPGTTLDKVIQDAQTFAEWKVDMLKLDGCF-STPEERAKGYPMMAAAL 176
Query: 883 NRTGRSIVYSCEWPLY---MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSS 1053
N TGR I +SC WP Y + P K NYT + E CN WRN+ DI DSW S+ +ILDW
Sbjct: 177 NATGRPIAFSCSWPAYEGGLPP--KVNYTLLTEICNVWRNYDDIQDSWSSVLSILDWFVD 234
Query: 1054 NQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAK 1233
NQ+ + PVAGPG WNDPDML+IGNFGLS+ Q QMALW ++AAPL MS DLR IS +
Sbjct: 235 NQDILQPVAGPGHWNDPDMLLIGNFGLSFEQARAQMALWTVLAAPLFMSTDLRTISAQNM 294
Query: 1234 ALLQDKDVIAINXDPLGKQGHRLRKD-XHFEVWERPLLNLAWAV 1362
+LQ+ +I IN DPLG QG R+ K+ H EV+ RPL + A A+
Sbjct: 295 DILQNPLMIKINQDPLGIQGRRILKEKFHIEVFMRPLASEASAL 338
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,441,005
Number of extensions: 1587469
Number of successful extensions: 4526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4521
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000160.1| alpha-galactosidase A precursor [Homo sapiens]. 642 0.0
Alignment gi|NP_000253.1| alpha-N-acetylgalactosaminidase precursor [Homo... 369 e-102
>ref|NP_000160.1| alpha-galactosidase A precursor [Homo sapiens].
Length = 429
Score = 642 bits (1656), Expect = 0.0
Identities = 295/346 (85%), Positives = 323/346 (93%)
Frame = +1
Query: 337 LGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLF 516
LG L FLA V W +PGARAL+NGLARTPTMGWLHWERFMCN+DCQE+PDSCISEKLF
Sbjct: 10 LGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLF 69
Query: 517 RQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGL 696
++AELM S+GWKDAGYEYLCIDDCWMAP+RDS+GRLQADP+RFP GIR+LA+YVHSKGL
Sbjct: 70 MEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGL 129
Query: 697 KLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSL 876
KLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCDS+++LADGYK MSL
Sbjct: 130 KLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSL 189
Query: 877 ALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSN 1056
ALNRTGRSIVYSCEWPLYM PF KPNYTEIR+YCNHWRNFADI DSW+SIK+ILDWTS N
Sbjct: 190 ALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFN 249
Query: 1057 QEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKA 1236
QE+IV VAGPGGWNDPDMLVIGNFGLSWNQ+VTQMALWAIMAAPL MSNDLRHISP+AKA
Sbjct: 250 QERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 309
Query: 1237 LLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
LLQDKDVIAIN DPLGKQG++LR+ +FEVWERPL LAWAVAM+N
Sbjct: 310 LLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMIN 355
>ref|NP_000253.1| alpha-N-acetylgalactosaminidase precursor [Homo sapiens].
Length = 411
Score = 369 bits (948), Expect = e-102
Identities = 185/325 (56%), Positives = 231/325 (71%), Gaps = 5/325 (1%)
Frame = +1
Query: 403 LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
L+NGL +TP MGWL WERF CN++C EDP +CISE+LF ++A+ MA DGW+D GY YL I
Sbjct: 18 LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNI 77
Query: 583 DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
DDCW+ RD+ GRL DPKRFP GI LADYVHS GLKLGIYAD+GN TC G+PG+
Sbjct: 78 DDCWIGG-RDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLD 136
Query: 760 YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
DA+TFAEW VD+LK DGC+ + + A GY +M+ ALN TGR I +SC WP Y
Sbjct: 137 KVVQDAQTFAEWKVDMLKLDGCF-STPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGG 195
Query: 931 MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
+ P + NY+ + + CN WRN+ DI DSW S+ +IL+W +Q+ + PVAGPG WNDPDM
Sbjct: 196 LPP--RVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDM 253
Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
L+IGNFGLS Q QMALW ++AAPLLMS DLR IS + +LQ+ +I IN DPLG Q
Sbjct: 254 LLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQ 313
Query: 1291 GHRLRKDXH-FEVWERPLLNLAWAV 1362
G R+ K+ EV+ RPL N A A+
Sbjct: 314 GRRIHKEKSLIEVYMRPLSNKASAL 338
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,424,101
Number of extensions: 1568941
Number of successful extensions: 4492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4486
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038491.2| alpha-galactosidase A [Mus musculus]. 604 e-173
Alignment gi|NP_032695.3| alpha-N-acetylgalactosaminidase precursor [Mus ... 384 e-107
>ref|NP_038491.2| alpha-galactosidase A [Mus musculus].
Length = 421
Score = 604 bits (1558), Expect = e-173
Identities = 279/355 (78%), Positives = 314/355 (88%)
Frame = +1
Query: 310 MKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDP 489
MK +SR RL L C LA V W + G RAL+NGLARTPTMGWLHWERFMCN+DCQE+P
Sbjct: 3 MKLLSRDTRLVCELALCPLALVFWSILGVRALDNGLARTPTMGWLHWERFMCNLDCQEEP 62
Query: 490 DSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRL 669
D+CISE+LF Q+AELM SDGW+DAGY+YLCIDDCWMAP+RDS+GRLQADP+RFP GI+ L
Sbjct: 63 DACISEQLFMQMAELMVSDGWRDAGYDYLCIDDCWMAPERDSKGRLQADPQRFPSGIKHL 122
Query: 670 ADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHL 849
A+YVHSKGLKLGIYADVGNKTCAGFPGSFG YDIDA+TFA+WGVDLLKFDGC+CDSV L
Sbjct: 123 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGSYDIDAQTFADWGVDLLKFDGCHCDSVVSL 182
Query: 850 ADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIK 1029
+GYK M+LALNRTGRSIVYSCEWPLY++PF KPNYT+I+ YCNHWRNF D+YDSW+SIK
Sbjct: 183 ENGYKYMALALNRTGRSIVYSCEWPLYLRPFHKPNYTDIQYYCNHWRNFDDVYDSWESIK 242
Query: 1030 NILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDL 1209
NIL WT Q++IV VAGPG WNDPDMLVIGNFGLSW+Q+VTQMALWAIMAAPLLMSNDL
Sbjct: 243 NILSWTVVYQKEIVEVAGPGSWNDPDMLVIGNFGLSWDQQVTQMALWAIMAAPLLMSNDL 302
Query: 1210 RHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
R IS +AKALLQ+KDVIAIN DPLGKQG+ RK+ H EVWERPL NLAWAVA+ N
Sbjct: 303 RQISSQAKALLQNKDVIAINQDPLGKQGYCFRKENHIEVWERPLSNLAWAVAVRN 357
>ref|NP_032695.3| alpha-N-acetylgalactosaminidase precursor [Mus musculus].
Length = 415
Score = 384 bits (986), Expect = e-107
Identities = 194/344 (56%), Positives = 241/344 (70%), Gaps = 5/344 (1%)
Frame = +1
Query: 346 VLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQI 525
VL +AQVL L NGL RTP MGWL WERF CN+DC EDP +CISE+LF ++
Sbjct: 6 VLLLALVAQVLM-------LENGLLRTPPMGWLAWERFRCNIDCVEDPKNCISERLFMEM 58
Query: 526 AELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLG 705
A+ +A DGW+D GY YL IDDCW+ RD+ GRL DPKRFP GI LADY HS GLKLG
Sbjct: 59 ADRLAQDGWRDLGYVYLNIDDCWIGG-RDASGRLIPDPKRFPHGIAFLADYAHSLGLKLG 117
Query: 706 IYADVGNKTCAGFPGS-FGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLAL 882
IY D+G TC G+PG+ ++DA+TFAEW VD+LK DGC+ S + A+GY +M+ AL
Sbjct: 118 IYEDMGKMTCMGYPGTTLDKVELDAETFAEWKVDMLKLDGCFSSS-RERAEGYPKMAAAL 176
Query: 883 NRTGRSIVYSCEWPLY---MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSS 1053
N TGR I +SC WP Y + P K NYTE+ CN WRN+ DI DSW+S+ +ILDW
Sbjct: 177 NATGRPIAFSCSWPAYEGGLPP--KVNYTEVSRVCNLWRNYKDIQDSWKSVLSILDWFVR 234
Query: 1054 NQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAK 1233
+Q+ + PVAGPG WNDPDML+IGNFGLS+++ QMALW ++AAPLLMS DLR ISP+
Sbjct: 235 HQDVLQPVAGPGHWNDPDMLLIGNFGLSFDESRAQMALWTVLAAPLLMSTDLRTISPQNM 294
Query: 1234 ALLQDKDVIAINXDPLGKQGHR-LRKDXHFEVWERPLLNLAWAV 1362
+LQ+ +I IN DPLG QG R L+ H EV++R L N A A+
Sbjct: 295 DILQNPLMIKINQDPLGIQGRRILKSKSHIEVFKRYLSNQASAL 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,833,600
Number of extensions: 1317332
Number of successful extensions: 3719
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3711
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171396.1| alpha-galactosidase A [Sus scrofa]. 758 0.0
Alignment gi|NP_001116694.1| alpha-N-acetylgalactosaminidase [Sus scrofa]. 365 e-101
>ref|NP_001171396.1| alpha-galactosidase A [Sus scrofa].
Length = 433
Score = 758 bits (1957), Expect = 0.0
Identities = 353/359 (98%), Positives = 357/359 (99%)
Frame = +1
Query: 298 MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC 477
MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC
Sbjct: 1 MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC 60
Query: 478 QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG 657
QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG
Sbjct: 61 QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG 120
Query: 658 IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS 837
IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS
Sbjct: 121 IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS 180
Query: 838 VKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW 1017
+KHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW
Sbjct: 181 IKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW 240
Query: 1018 QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLM 1197
QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQ+VTQMALWAIMAAPLLM
Sbjct: 241 QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLLM 300
Query: 1198 SNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
SNDLRHISP+AKALLQDKDVIAIN DPLGKQGHRLRKD +FEVWERPLLNLAWAVAMVN
Sbjct: 301 SNDLRHISPEAKALLQDKDVIAINQDPLGKQGHRLRKDNNFEVWERPLLNLAWAVAMVN 359
>ref|NP_001116694.1| alpha-N-acetylgalactosaminidase [Sus scrofa].
Length = 411
Score = 365 bits (936), Expect = e-101
Identities = 182/325 (56%), Positives = 229/325 (70%), Gaps = 5/325 (1%)
Frame = +1
Query: 403 LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
L NGL R P MGWL WERF CN+DC EDP +CISE+LF ++A+ +A DGW+D GY YL I
Sbjct: 18 LENGLLRKPPMGWLGWERFRCNIDCDEDPKNCISERLFMEMADRLAQDGWRDLGYVYLNI 77
Query: 583 DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
DDCW+ RD++G L DPKRFP GI LADY HS GLKLGIY D+G+ TC G+PG+
Sbjct: 78 DDCWIGG-RDAKGNLMPDPKRFPHGIAFLADYAHSLGLKLGIYDDLGSFTCMGYPGTTLD 136
Query: 760 YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
DA TFAEW VD+L DGC+ + K ADGY +M+ ALN TGR I +SC WP Y
Sbjct: 137 KVVHDAHTFAEWKVDMLNLDGCF-STHKERADGYPKMAAALNATGRPIAFSCSWPAYEGG 195
Query: 931 MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
+ P + NY+ + + CN WRN+ DI DSW S+ +ILDW ++Q+ + PVAGPG WNDPDM
Sbjct: 196 LPP--RVNYSLLADICNLWRNYDDIQDSWWSVLSILDWFVAHQDILQPVAGPGHWNDPDM 253
Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
L+IGNFGLS+ Q +QMALW ++AAPL MS DLR IS + +LQ+ +I IN DPLG Q
Sbjct: 254 LLIGNFGLSFEQAQSQMALWTVLAAPLFMSTDLRTISAQNVDILQNTLMIKINQDPLGIQ 313
Query: 1291 GHRLRKDXHF-EVWERPLLNLAWAV 1362
G R+ K+ F +V+ RPL N A A+
Sbjct: 314 GRRVLKEKSFIDVFMRPLANEACAL 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,464,004
Number of extensions: 989383
Number of successful extensions: 2822
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002451
(1376 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 989 0.0
>gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffold549
Length = 126171
Score = 989 bits (499), Expect = 0.0
Identities = 502/503 (99%)
Strand = Plus / Minus
Query: 1 ctgctcggctctaccgcgggatcattaaagtgccgcacttccttctggtatgacaatagg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82728 ctgctcggctctaccccgggatcattaaagtgccgcacttccttctggtatgacaatagg 82669
Query: 61 gcgggtcgatattcagaaaaagatggtatggttggtggcggggcgtcttctctgactggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82668 gcgggtcgatattcagaaaaagatggtatggttggtggcggggcgtcttctctgactggt 82609
Query: 121 tattggtccgcctctggggataaccatcccagttgccggagaaacagtttcgtcattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82608 tattggtccgcctctggggataaccatcccagttgccggagaaacagtttcgtcattgct 82549
Query: 181 taacaactcaccgatgattgggtaggcgagcgaagttgggttccgcgggccgcctccgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82548 taacaactcaccgatgattgggtaggcgagcgaagttgggttccgcgggccgcctccgcc 82489
Query: 241 tttttagcccttaagaacctagaagcccaggtgactcctggagatctctgttgcgtgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82488 tttttagcccttaagaacctagaagcccaggtgactcctggagatctctgttgcgtgatg 82429
Query: 301 acagctacgatgaagccggtgagcagggtccggcggctgggctacgtgctgccattttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82428 acagctacgatgaagccggtgagcagggtccggcggctgggctacgtgctgccattttgc 82369
Query: 361 ttcctggcccaggttctctggggcgtcccaggggcccgggccctgaacaacggcttggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82368 ttcctggcccaggttctctggggcgtcccaggggcccgggccctgaacaacggcttggcg 82309
Query: 421 aggacccctaccatgggctggctgcactgggagcgcttcatgtgcaatgtggactgtcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82308 aggacccctaccatgggctggctgcactgggagcgcttcatgtgcaatgtggactgtcaa 82249
Query: 481 gaagatccggattcctgtatcag 503
|||||||||||||||||||||||
Sbjct: 82248 gaagatccggattcctgtatcag 82226
Score = 391 bits (197), Expect = e-106
Identities = 199/200 (99%)
Strand = Plus / Minus
Query: 1110 gctggtgattggcaactttggcctcagctggaatcaggaggtaactcagatggccctctg 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75622 gctggtgattggcaactttggcctcagctggaatcaggaggtaactcagatggccctctg 75563
Query: 1170 ggctatcatggctgctccattactcatgtccaatgacctccgacacatcagccccaaagc 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75562 ggctatcatggctgctccattactcatgtccaatgacctccgacacatcagccccaaagc 75503
Query: 1230 caaagctcttcttcaggataaagatgtaatagccatcaaccnagaccccctgggcaagca 1289
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75502 caaagctcttcttcaggataaagatgtaatagccatcaaccaagaccccctgggcaagca 75443
Query: 1290 ggggcaccggctcagaaagg 1309
||||||||||||||||||||
Sbjct: 75442 ggggcaccggctcagaaagg 75423
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 500 tcagcgagaagctcttccggcagatagctgagctcatggcctcagatggctggaaggatg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79956 tcagcgagaagctcttccggcagatagctgagctcatggcctcagatggctggaaggatg 79897
Query: 560 caggttatgagtacctatgcattgatgactgttggatggctcccaaaagggattcccaag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79896 caggttatgagtacctatgcattgatgactgttggatggctcccaaaagggattcccaag 79837
Query: 620 gcagacttcaggcagaccctaaacgctttcctggtgggatccgccgcctagccgattatg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79836 gcagacttcaggcagaccctaaacgctttcctggtgggatccgccgcctagccgattatg 79777
Query: 680 t 680
|
Sbjct: 79776 t 79776
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 679 gtccacagcaaaggactgaagctagggatttatgcagatgttggaaataaaacctgtgct 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78490 gtccacagcaaaggactgaagctagggatttatgcagatgttggaaataaaacctgtgct 78431
Query: 739 ggcttccctggcagttttggttactatgacattgatgccaagacctttgctgagtgggga 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78430 ggcttccctggcagttttggttactatgacattgatgccaagacctttgctgagtgggga 78371
Query: 799 gttgatctgctcaaattcgatggttgttactgtgacagtgtaaaacatttggcagacggt 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78370 gttgatctgctcaaattcgatggttgttactgtgacagtgtaaaacatttggcagacggt 78311
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 947 agcccaattacaccgaaatccgagagtactgcaatcactggagaaattttgctgacattt 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75993 agcccaattacaccgaaatccgagagtactgcaatcactggagaaattttgctgacattt 75934
Query: 1007 atgattcctggcaaagtataaagaatattttggactggacatcttctaaccaggagaaaa 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75933 atgattcctggcaaagtataaagaatattttggactggacatcttctaaccaggagaaaa 75874
Query: 1067 ttgttcctgttgcaggaccagggggttggaatgatccagatatg 1110
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75873 ttgttcctgttgcaggaccagggggttggaatgatccagatatg 75830
Score = 184 bits (93), Expect = 9e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 856 ggttataagcaaatgtccttggccctgaacaggactggcagaagcattgtgtactcctgt 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77470 ggttataagcaaatgtccttggccctgaacaggactggcagaagcattgtgtactcctgt 77411
Query: 916 gagtggcccctttatatgcagcccttttttaag 948
|||||||||||||||||||||||||||||||||
Sbjct: 77410 gagtggcccctttatatgcagcccttttttaag 77378
Score = 125 bits (63), Expect = 7e-26
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 1307 aggacaancactttgaagtgtgggaaaggcctctcttgaacttagcctgggctgtggcta 1366
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75068 aggacaacaactttgaagtgtgggaaaggcctctcttgaacttagcctgggctgtggcta 75009
Query: 1367 tggtaaacct 1376
||||||||||
Sbjct: 75008 tggtaaacct 74999
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,732,996
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 7
Length of query: 1376
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1355
Effective length of database: 2,808,413,156
Effective search space: 3805399826380
Effective search space used: 3805399826380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)