Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092425.1| procollagen galactosyltransferase 1 precurso... 1148 0.0
Alignment gi|NP_001178231.1| procollagen galactosyltransferase 2 [Bos tau... 818 0.0
Alignment gi|XP_002694258.1| PREDICTED: glycosyltransferase 25 domain con... 818 0.0
Alignment gi|NP_001095505.1| glycosyltransferase 25 family member 3 precu... 658 0.0
Alignment gi|XP_001255106.3| PREDICTED: glycosyltransferase 25 family mem... 296 4e-80
Alignment gi|NP_776573.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 72 3e-12
Alignment gi|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 71 4e-12
Alignment gi|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarat... 71 4e-12
Alignment gi|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 65 2e-10
>ref|NP_001092425.1| procollagen galactosyltransferase 1 precursor [Bos taurus].
Length = 623
Score = 1148 bits (2969), Expect = 0.0
Identities = 564/623 (90%), Positives = 578/623 (92%)
Frame = +3
Query: 33 MAAAPRVCRRHRQXXXXXXXXXXXXXXXXXXXXXXXXYFPEERWSPESPLQAPRVLIALL 212
MAAAPR C+ H + YFPEERWSPESPLQAPRVLIALL
Sbjct: 1 MAAAPRACKGHGRPLPVLLLLLLLALPPLGGPPGAAAYFPEERWSPESPLQAPRVLIALL 60
Query: 213 ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 392
ARNAAHALP+TLGALERLRHPRERTALWVATDHN+DNTSAVLREWLVAVK LYHSVEWRP
Sbjct: 61 ARNAAHALPATLGALERLRHPRERTALWVATDHNADNTSAVLREWLVAVKGLYHSVEWRP 120
Query: 393 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 572
+EEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTL+L
Sbjct: 121 SEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLTL 180
Query: 573 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL 752
LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKR+R+GCFAVPMVHSTFL
Sbjct: 181 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRERRGCFAVPMVHSTFL 240
Query: 753 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 932
IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS
Sbjct: 241 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 300
Query: 933 SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKXXXXXXXXXX 1112
+LQDEAESFMHVQLEVMVKHPP+EPS+FISVPTK PDKMGFDEVFMINLK
Sbjct: 301 TLQDEAESFMHVQLEVMVKHPPSEPSRFISVPTKTPDKMGFDEVFMINLKRRQDRRERML 360
Query: 1113 XXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 1292
EQEI RLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI
Sbjct: 361 RALEEQEIACRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 420
Query: 1293 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 1472
WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLM+DVEREGLDWDLIYVGRKRMQVEHPEK
Sbjct: 421 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMQDVEREGLDWDLIYVGRKRMQVEHPEK 480
Query: 1473 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 1652
AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA
Sbjct: 481 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 540
Query: 1653 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSRKMREQQA 1832
HFSPR+LRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKS+KMREQQA
Sbjct: 541 HFSPRDLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSQKMREQQA 600
Query: 1833 LSREAKNSDVLQSPLDSAARDEL 1901
LSREAKNSDVLQSPLDSAARDEL
Sbjct: 601 LSREAKNSDVLQSPLDSAARDEL 623
>ref|NP_001178231.1| procollagen galactosyltransferase 2 [Bos taurus].
Length = 626
Score = 818 bits (2112), Expect = 0.0
Identities = 382/581 (65%), Positives = 465/581 (80%), Gaps = 3/581 (0%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESPLQ P VL+ +LARNAAH LP LG LERL +P+ R A+W ATDHN DNT+ +LREW
Sbjct: 46 PESPLQRPTVLVVVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEILREW 105
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L V+ YH VEWRP +EP SYPDE GPKHW SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 106 LKNVQKAYHYVEWRPMDEPESYPDEIGPKHWPASRFAHVMKLRQAALRTAREKWSDYILF 165
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+LL+AENKT+VAPML+SR YSNFWCG+T QG+YKRTP Y+ IR+
Sbjct: 166 IDVDNFLTNPQTLNLLMAENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYLQIREWK 225
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCN 887
R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDIIVFAFS +QA +QMY+CN
Sbjct: 226 RLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCN 285
Query: 888 KEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVF 1067
+E YG+LP+PL+ H +L+++ E+ +HVQ E M+ PP EPSQF+SV K PDKMGFDE+F
Sbjct: 286 REHYGYLPIPLKPHQTLEEDVENLIHVQTEAMIDGPPMEPSQFVSVVPKYPDKMGFDEIF 345
Query: 1068 MINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRP 1247
MINLK EQEIE ++VEAVDGKA+NTSQ++AL I+MLPGYRDPY RP
Sbjct: 346 MINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRP 405
Query: 1248 LTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDL 1427
LT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+RFE FK++LM LM D++R LDW+L
Sbjct: 406 LTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDDIDRVQLDWEL 465
Query: 1428 IYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEF 1607
IY+GRKRMQV+ PEK+VP V NLVEADYSYWTL YVISL+GA+KL+ A P KMLPVDEF
Sbjct: 466 IYIGRKRMQVKEPEKSVPNVVNLVEADYSYWTLGYVISLEGAQKLVGADPFGKMLPVDEF 525
Query: 1608 LPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKT 1787
LP+M++KHPV+EY H+ R+L+AFS EPLLIYPTHYTG GY+SDTETS +W+NE V T
Sbjct: 526 LPIMYNKHPVAEYMEHYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVAT 585
Query: 1788 DWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
DWDR + K R+Q + R AKN++ L P LD+A +RDEL
Sbjct: 586 DWDRTHAWKSRKQSRIHRNAKNTEALPPPASLDTAPSRDEL 626
>ref|XP_002694258.1| PREDICTED: glycosyltransferase 25 domain containing 2 [Bos taurus].
Length = 626
Score = 818 bits (2112), Expect = 0.0
Identities = 382/581 (65%), Positives = 465/581 (80%), Gaps = 3/581 (0%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESPLQ P VL+ +LARNAAH LP LG LERL +P+ R A+W ATDHN DNT+ +LREW
Sbjct: 46 PESPLQRPTVLVVVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEILREW 105
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L V+ YH VEWRP +EP SYPDE GPKHW SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 106 LKNVQKAYHYVEWRPMDEPESYPDEIGPKHWPASRFAHVMKLRQAALRTAREKWSDYILF 165
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+LL+AENKT+VAPML+SR YSNFWCG+T QG+YKRTP Y+ IR+
Sbjct: 166 IDVDNFLTNPQTLNLLMAENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYLQIREWK 225
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCN 887
R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDIIVFAFS +QA +QMY+CN
Sbjct: 226 RLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCN 285
Query: 888 KEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVF 1067
+E YG+LP+PL+ H +L+++ E+ +HVQ E M+ PP EPSQF+SV K PDKMGFDE+F
Sbjct: 286 REHYGYLPIPLKPHQTLEEDVENLIHVQTEAMIDGPPMEPSQFVSVVPKYPDKMGFDEIF 345
Query: 1068 MINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRP 1247
MINLK EQEIE ++VEAVDGKA+NTSQ++AL I+MLPGYRDPY RP
Sbjct: 346 MINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRP 405
Query: 1248 LTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDL 1427
LT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+RFE FK++LM LM D++R LDW+L
Sbjct: 406 LTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDDIDRVQLDWEL 465
Query: 1428 IYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEF 1607
IY+GRKRMQV+ PEK+VP V NLVEADYSYWTL YVISL+GA+KL+ A P KMLPVDEF
Sbjct: 466 IYIGRKRMQVKEPEKSVPNVVNLVEADYSYWTLGYVISLEGAQKLVGADPFGKMLPVDEF 525
Query: 1608 LPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKT 1787
LP+M++KHPV+EY H+ R+L+AFS EPLLIYPTHYTG GY+SDTETS +W+NE V T
Sbjct: 526 LPIMYNKHPVAEYMEHYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVAT 585
Query: 1788 DWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
DWDR + K R+Q + R AKN++ L P LD+A +RDEL
Sbjct: 586 DWDRTHAWKSRKQSRIHRNAKNTEALPPPASLDTAPSRDEL 626
>ref|NP_001095505.1| glycosyltransferase 25 family member 3 precursor [Bos taurus].
Length = 595
Score = 658 bits (1698), Expect = 0.0
Identities = 320/542 (59%), Positives = 398/542 (73%)
Frame = +3
Query: 150 PEERWSPESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTS 329
PE E PL P V++A+LARNA H+LP LGALERL +PR R ALW ATDHN DNT+
Sbjct: 20 PEAAGVAEPPL--PTVVLAILARNAEHSLPHYLGALERLDYPRARLALWCATDHNVDNTT 77
Query: 330 AVLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMW 509
A+LREWL AV Y +V WRP EPRSYPDEEGPKHW+ R++ +M+L+Q AL ARD
Sbjct: 78 AMLREWLAAVGDNYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWG 137
Query: 510 ADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYI 689
ADYILF D DN++ N TL LLI VVAPMLDS+ YSNFWCG+T QGYY+RT Y
Sbjct: 138 ADYILFADTDNILTNNQTLRLLIEPGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTADYF 197
Query: 690 PIRKRDRQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEV 869
P + R R+GCF VPMVHSTFL+ LR + LAFYPPHP+YTW FDDIIVFA++C+ A V
Sbjct: 198 PTKNRQRRGCFRVPMVHSTFLVSLRAEGTGQLAFYPPHPNYTWPFDDIIVFAYACQAAGV 257
Query: 870 QMYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKM 1049
++VCN++ YG+L VP++SH L+DE +F+H+ LE +V PP S +S P K+P KM
Sbjct: 258 AVHVCNEQRYGYLNVPVKSHQGLEDERVNFIHLILEALVDGPPMWASAHVSRPPKRPSKM 317
Query: 1050 GFDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRD 1229
GFDEVF+I+L E EI R+V+AVDG+ +N+S + LG+ +LPGY+D
Sbjct: 318 GFDEVFVISLARRPDRRERMLTSLWEMEISGRVVDAVDGRMLNSSVMRTLGVDLLPGYQD 377
Query: 1230 PYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVERE 1409
PY GR LTKGE+GCFLSHY+IW+EVV RGL + +VFEDD+RFE FK RL LM +VE E
Sbjct: 378 PYSGRTLTKGEVGCFLSHYSIWEEVVTRGLAQVVVFEDDVRFESNFKGRLEQLMEEVEAE 437
Query: 1410 GLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKM 1589
L WDLIY+GRK++ E E V + +LV A YSYWTLAYV+SL GARKLLA++PL +M
Sbjct: 438 KLPWDLIYLGRKQVNPEE-EAVVEGLPHLVAAGYSYWTLAYVLSLAGARKLLASQPLRRM 496
Query: 1590 LPVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWN 1769
LPVDEFLP+MFD+HP +YKAHF PR+L+AFS PLL PTHY GD ++SDTETS W+
Sbjct: 497 LPVDEFLPIMFDQHPNEQYKAHFWPRDLQAFSARPLLAAPTHYAGDSEWLSDTETSSPWD 556
Query: 1770 NE 1775
++
Sbjct: 557 DD 558
>ref|XP_001255106.3| PREDICTED: glycosyltransferase 25 family member 3-like, partial
[Bos taurus].
Length = 282
Score = 296 bits (759), Expect = 4e-80
Identities = 138/215 (64%), Positives = 162/215 (75%)
Frame = +3
Query: 219 NAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRPAE 398
NA H+LP LGALERL +PR R ALW ATDHN DNT+A+LREWL AV Y +V WRP
Sbjct: 66 NAEHSLPHYLGALERLDYPRARLALWCATDHNVDNTTAMLREWLAAVGDNYAAVVWRPEG 125
Query: 399 EPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSLLI 578
EPRSYPDEEGPKHW+ R++ +M+L+Q AL ARD ADYILF D DN++ N TL LLI
Sbjct: 126 EPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFADTDNILTNNQTLRLLI 185
Query: 579 AENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFLID 758
VVAPMLDS+ YSNFWCG+T QGYY+RT Y P + R R+GCF VPMVHSTFL+
Sbjct: 186 EPGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTADYFPTKNRQRRGCFRVPMVHSTFLVS 245
Query: 759 LRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQA 863
LR + LAFYPPHP+YTW FDDIIVFA++C+ A
Sbjct: 246 LRAEGTGQLAFYPPHPNYTWPFDDIIVFAYACQAA 280
>ref|NP_776573.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Bos
taurus].
Length = 726
Score = 71.6 bits (174), Expect = 3e-12
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 2/242 (0%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ + L L L +P++R L++ HN + + A + ++L
Sbjct: 285 PAVLVGVFIEQPTPFLSLFFQRLLLLHYPQKRFRLFI---HNHEQHHKAQVEQFLAEHGD 341
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 342 EYQSVKL------------VGP----EVRVANADARNMGADLCRQDRGCTYYFSVDADVA 385
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P TL LLI +NK V+ P++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 386 LTEPKTLRLLIEQNKNVITPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 445
Query: 723 AVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYG 902
VP + + +LI K ++ + D + F + +Q +V M++ N+ +G
Sbjct: 446 NVPYISNIYLI---KGSALRAELQETDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHSFG 502
Query: 903 FL 908
L
Sbjct: 503 HL 504
>ref|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [Bos taurus].
Length = 751
Score = 70.9 bits (172), Expect = 4e-12
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 6/195 (3%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRVL+A+ LP L L L +P +R L++ HN++ +
Sbjct: 309 PRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFL---HNNE---------------V 350
Query: 369 YHSVE----WRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVD 533
YH W ++ S GP+ + R A+ R D ++ +D
Sbjct: 351 YHEPHIDESWPQLQDHFSAVKLVGPEEALTPG-----EARDMAMDICRQDPKCEFYFSLD 405
Query: 534 ADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
AD +I NP TL +LI N+ V+APML +SNFW ++ YY R+ Y+ + +R R
Sbjct: 406 ADTVITNPQTLRILIEANRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKR 465
Query: 711 QGCFAVPMVHSTFLI 755
G + VP + ++I
Sbjct: 466 VGVWNVPYISQAYVI 480
>ref|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Bos
taurus].
Length = 751
Score = 70.9 bits (172), Expect = 4e-12
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 6/195 (3%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRVL+A+ LP L L L +P +R L++ HN++ +
Sbjct: 309 PRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFL---HNNE---------------V 350
Query: 369 YHSVE----WRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVD 533
YH W ++ S GP+ + R A+ R D ++ +D
Sbjct: 351 YHEPHIDESWPQLQDHFSAVKLVGPEEALTPG-----EARDMAMDICRQDPKCEFYFSLD 405
Query: 534 ADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
AD +I NP TL +LI N+ V+APML +SNFW ++ YY R+ Y+ + +R R
Sbjct: 406 ADTVITNPQTLRILIEANRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKR 465
Query: 711 QGCFAVPMVHSTFLI 755
G + VP + ++I
Sbjct: 466 VGVWNVPYISQAYVI 480
>ref|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Bos taurus].
Length = 762
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +3
Query: 498 RDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKR 674
+D +Y VDAD ++ NP TL +LI +N+ ++AP++ +SNFW ++ GYY R
Sbjct: 385 QDKNCEYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYAR 444
Query: 675 TPAYIPIRKRDRQGCFAVPMVHSTFLI 755
+ Y+ I + +R G + VP + + +LI
Sbjct: 445 SEDYVDIVQGNRVGIWNVPYMANVYLI 471
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,142,679
Number of extensions: 2132075
Number of successful extensions: 10480
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10380
Number of HSP's successfully gapped: 9
Length of query: 730
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 620
Effective length of database: 14,041,694
Effective search space: 8705850280
Effective search space used: 8705850280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541950.2| PREDICTED: similar to glycosyltransferase 25 do... 1155 0.0
Alignment gi|XP_849763.1| PREDICTED: similar to glycosyltransferase 25 do... 821 0.0
Alignment gi|XP_859640.1| PREDICTED: similar to glycosyltransferase 25 do... 808 0.0
Alignment gi|XP_859668.1| PREDICTED: similar to glycosyltransferase 25 do... 806 0.0
Alignment gi|XP_851283.1| PREDICTED: similar to cerebral endothelial cell... 646 0.0
Alignment gi|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxog... 77 9e-14
Alignment gi|XP_544565.2| PREDICTED: similar to Procollagen-lysine,2-oxog... 77 9e-14
Alignment gi|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxo... 75 3e-13
Alignment gi|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxo... 75 3e-13
Alignment gi|XP_865452.1| PREDICTED: similar to Procollagen-lysine,2-oxog... 69 2e-11
>ref|XP_541950.2| PREDICTED: similar to glycosyltransferase 25 domain containing 1
[Canis familiaris].
Length = 623
Score = 1155 bits (2987), Expect = 0.0
Identities = 569/623 (91%), Positives = 580/623 (93%)
Frame = +3
Query: 33 MAAAPRVCRRHRQXXXXXXXXXXXXXXXXXXXXXXXXYFPEERWSPESPLQAPRVLIALL 212
MAAAPR CRR + YFPEERWSPESPLQAPRVLIAL+
Sbjct: 1 MAAAPRACRRRWRPRPVLLLLLLLALPPPGGPPGAAAYFPEERWSPESPLQAPRVLIALV 60
Query: 213 ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 392
ARNAAHALP+TLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP
Sbjct: 61 ARNAAHALPATLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 120
Query: 393 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 572
AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNP+TLSL
Sbjct: 121 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPNTLSL 180
Query: 573 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL 752
LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDR+GCFAVPMVHSTFL
Sbjct: 181 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRRGCFAVPMVHSTFL 240
Query: 753 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 932
IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLR+HS
Sbjct: 241 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRAHS 300
Query: 933 SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKXXXXXXXXXX 1112
+LQDEAESFMHVQLEVMVKHPPAEPS+FISVPTK PDKMGFDEVFMINLK
Sbjct: 301 TLQDEAESFMHVQLEVMVKHPPAEPSKFISVPTKTPDKMGFDEVFMINLKRRQDRRERML 360
Query: 1113 XXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 1292
EQEIE RLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI
Sbjct: 361 RALQEQEIECRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 420
Query: 1293 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 1472
WKEVVDRGLQKSLVFEDDLRFEIFFKRRL+NLMRDVEREGLDWDLIYVGRKRMQVEHPEK
Sbjct: 421 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLLNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 480
Query: 1473 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 1652
AVPRVRNLVEADYSYWTLAYVISLQGARKLLAA+PLSKMLPVDEFLPVMFDKHPVSEYKA
Sbjct: 481 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAAQPLSKMLPVDEFLPVMFDKHPVSEYKA 540
Query: 1653 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSRKMREQQA 1832
HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKS+KMREQQA
Sbjct: 541 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSQKMREQQA 600
Query: 1833 LSREAKNSDVLQSPLDSAARDEL 1901
LSREAKNSDVLQSPLDSAARDEL
Sbjct: 601 LSREAKNSDVLQSPLDSAARDEL 623
>ref|XP_849763.1| PREDICTED: similar to glycosyltransferase 25 domain containing 2
isoform 1 [Canis familiaris].
Length = 626
Score = 821 bits (2120), Expect = 0.0
Identities = 382/581 (65%), Positives = 469/581 (80%), Gaps = 3/581 (0%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESP+Q P VL+A+LARNAAHALP LG LERL +P+ R A+W ATDHN DNT+ +LREW
Sbjct: 46 PESPVQRPTVLVAVLARNAAHALPPFLGCLERLDYPKGRMAIWAATDHNVDNTTEILREW 105
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L V+ YH VEWRP +EP SYPDE GPKHW SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 106 LKNVQRFYHYVEWRPMDEPESYPDEIGPKHWPSSRFAHVMKLRQAALRTAREKWSDYILF 165
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+L+IAENKT+VAPML+SR YSNFWCG+T QG+YKRTP Y+ IR+
Sbjct: 166 IDVDNFLTNPQTLNLMIAENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYVQIREWK 225
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCN 887
R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDIIVFAFS +QA +QMY+CN
Sbjct: 226 RLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCN 285
Query: 888 KEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVF 1067
+E YG+LP+PL+ H +LQ++ E+F+HVQ+E M+ PP EPSQF+S K PDKMGFDE+F
Sbjct: 286 REHYGYLPIPLKPHQTLQEDIENFIHVQIEAMIDGPPVEPSQFVSSVPKYPDKMGFDEIF 345
Query: 1068 MINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRP 1247
MINLK EQEI+ ++VEAVDGKA+NTSQ++AL I+MLPGYRDPY RP
Sbjct: 346 MINLKRRKDRRDRMLRTLYEQEIDVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRP 405
Query: 1248 LTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDL 1427
LT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+RFE FK++LM LM D+++ LDW+L
Sbjct: 406 LTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDDIDQAQLDWEL 465
Query: 1428 IYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEF 1607
IY+GRKRMQV+ PEKAVP V NLVEADYSYWTL YVISL+GA+KL+ A P KMLPVDEF
Sbjct: 466 IYIGRKRMQVKEPEKAVPNVGNLVEADYSYWTLGYVISLEGAQKLVGADPFGKMLPVDEF 525
Query: 1608 LPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKT 1787
LP+M++KHPV+EYK ++ R+L+AFS EPLLIYPTHYTG GY+SDTETS +W+NE V T
Sbjct: 526 LPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVAT 585
Query: 1788 DWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
DWDR S K R+Q + R AKN++ L SP +D+ ++DEL
Sbjct: 586 DWDRTHSWKSRKQSHIHRNAKNTEALPSPTSVDTVPSKDEL 626
>ref|XP_859640.1| PREDICTED: similar to glycosyltransferase 25 domain containing 2
isoform 2 [Canis familiaris].
Length = 651
Score = 808 bits (2086), Expect = 0.0
Identities = 382/606 (63%), Positives = 469/606 (77%), Gaps = 28/606 (4%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESP+Q P VL+A+LARNAAHALP LG LERL +P+ R A+W ATDHN DNT+ +LREW
Sbjct: 46 PESPVQRPTVLVAVLARNAAHALPPFLGCLERLDYPKGRMAIWAATDHNVDNTTEILREW 105
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L V+ YH VEWRP +EP SYPDE GPKHW SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 106 LKNVQRFYHYVEWRPMDEPESYPDEIGPKHWPSSRFAHVMKLRQAALRTAREKWSDYILF 165
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+L+IAENKT+VAPML+SR YSNFWCG+T QG+YKRTP Y+ IR+
Sbjct: 166 IDVDNFLTNPQTLNLMIAENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYVQIREWK 225
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQA-------- 863
R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDIIVFAFS +QA
Sbjct: 226 RLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQAGTVYLHMW 285
Query: 864 -----------------EVQMYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKH 992
+QMY+CN+E YG+LP+PL+ H +LQ++ E+F+HVQ+E M+
Sbjct: 286 KYEMVRFVRCSCCIFTTSIQMYLCNREHYGYLPIPLKPHQTLQEDIENFIHVQIEAMIDG 345
Query: 993 PPAEPSQFISVPTKKPDKMGFDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKA 1172
PP EPSQF+S K PDKMGFDE+FMINLK EQEI+ ++VEAVDGKA
Sbjct: 346 PPVEPSQFVSSVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIDVKIVEAVDGKA 405
Query: 1173 MNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLR 1352
+NTSQ++AL I+MLPGYRDPY RPLT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+R
Sbjct: 406 LNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVR 465
Query: 1353 FEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAY 1532
FE FK++LM LM D+++ LDW+LIY+GRKRMQV+ PEKAVP V NLVEADYSYWTL Y
Sbjct: 466 FEHQFKKKLMKLMDDIDQAQLDWELIYIGRKRMQVKEPEKAVPNVGNLVEADYSYWTLGY 525
Query: 1533 VISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPT 1712
VISL+GA+KL+ A P KMLPVDEFLP+M++KHPV+EYK ++ R+L+AFS EPLLIYPT
Sbjct: 526 VISLEGAQKLVGADPFGKMLPVDEFLPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPT 585
Query: 1713 HYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA 1886
HYTG GY+SDTETS +W+NE V TDWDR S K R+Q + R AKN++ L SP +D+
Sbjct: 586 HYTGQPGYLSDTETSTIWDNETVATDWDRTHSWKSRKQSHIHRNAKNTEALPSPTSVDTV 645
Query: 1887 -ARDEL 1901
++DEL
Sbjct: 646 PSKDEL 651
>ref|XP_859668.1| PREDICTED: similar to glycosyltransferase 25 domain containing 2
isoform 3 [Canis familiaris].
Length = 643
Score = 806 bits (2081), Expect = 0.0
Identities = 382/598 (63%), Positives = 469/598 (78%), Gaps = 20/598 (3%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTAL--------W--------- 296
PESP+Q P VL+A+LARNAAHALP LG LERL +P+ R A+ W
Sbjct: 46 PESPVQRPTVLVAVLARNAAHALPPFLGCLERLDYPKGRMAICGLSHQGTWQELAHILQM 105
Query: 297 VATDHNSDNTSAVLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLR 476
ATDHN DNT+ +LREWL V+ YH VEWRP +EP SYPDE GPKHW SR+ HVMKLR
Sbjct: 106 AATDHNVDNTTEILREWLKNVQRFYHYVEWRPMDEPESYPDEIGPKHWPSSRFAHVMKLR 165
Query: 477 QAALKSARDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTS 656
QAAL++AR+ W+DYILF+D DN + NP TL+L+IAENKT+VAPML+SR YSNFWCG+T
Sbjct: 166 QAALRTAREKWSDYILFIDVDNFLTNPQTLNLMIAENKTIVAPMLESRGLYSNFWCGITP 225
Query: 657 QGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDII 836
QG+YKRTP Y+ IR+ R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDII
Sbjct: 226 QGFYKRTPDYVQIREWKRLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDII 285
Query: 837 VFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQF 1016
VFAFS +QA +QMY+CN+E YG+LP+PL+ H +LQ++ E+F+HVQ+E M+ PP EPSQF
Sbjct: 286 VFAFSSRQAGIQMYLCNREHYGYLPIPLKPHQTLQEDIENFIHVQIEAMIDGPPVEPSQF 345
Query: 1017 ISVPTKKPDKMGFDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEA 1196
+S K PDKMGFDE+FMINLK EQEI+ ++VEAVDGKA+NTSQ++A
Sbjct: 346 VSSVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIDVKIVEAVDGKALNTSQLKA 405
Query: 1197 LGIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRR 1376
L I+MLPGYRDPY RPLT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+RFE FK++
Sbjct: 406 LNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKK 465
Query: 1377 LMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGAR 1556
LM LM D+++ LDW+LIY+GRKRMQV+ PEKAVP V NLVEADYSYWTL YVISL+GA+
Sbjct: 466 LMKLMDDIDQAQLDWELIYIGRKRMQVKEPEKAVPNVGNLVEADYSYWTLGYVISLEGAQ 525
Query: 1557 KLLAARPLSKMLPVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGY 1736
KL+ A P KMLPVDEFLP+M++KHPV+EYK ++ R+L+AFS EPLLIYPTHYTG GY
Sbjct: 526 KLVGADPFGKMLPVDEFLPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGY 585
Query: 1737 VSDTETSVVWNNEHVKTDWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
+SDTETS +W+NE V TDWDR S K R+Q + R AKN++ L SP +D+ ++DEL
Sbjct: 586 LSDTETSTIWDNETVATDWDRTHSWKSRKQSHIHRNAKNTEALPSPTSVDTVPSKDEL 643
>ref|XP_851283.1| PREDICTED: similar to cerebral endothelial cell adhesion molecule 1
[Canis familiaris].
Length = 595
Score = 646 bits (1666), Expect = 0.0
Identities = 311/535 (58%), Positives = 394/535 (73%)
Frame = +3
Query: 171 ESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWL 350
E PL P V++ +LARNA H+LP LGALERL +PR R ALW ATDHN+DNT+ +L+EWL
Sbjct: 27 EPPL--PAVVLTILARNAEHSLPHYLGALERLDYPRARLALWCATDHNTDNTTEMLQEWL 84
Query: 351 VAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFV 530
AV Y +V WRP EPRSYPDEEGPKHW+ R++ +M+L+Q AL ARD ADYILF
Sbjct: 85 AAVGDDYATVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFA 144
Query: 531 DADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
D DN++ N TL LLI + VVAPMLDS+ YSNFWCG+T QGYY+RT Y P + R R
Sbjct: 145 DTDNILTNNQTLRLLIDQGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTADYFPTKNRQR 204
Query: 711 QGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNK 890
+GCF VPMVHSTFL+ LR + LAFYPPHP+Y+W FDDIIVFA++C+ V ++VCN+
Sbjct: 205 RGCFQVPMVHSTFLVSLRTEGAAQLAFYPPHPNYSWPFDDIIVFAYACQAVGVTIHVCNE 264
Query: 891 EVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFM 1070
YG++ VP++ H L+DE +F+H+ LE +V PP S +S P K+P KMGFDEVF+
Sbjct: 265 HRYGYMNVPVKPHQGLEDEKVNFIHLILEALVDGPPMWASAHVSRPPKRPSKMGFDEVFV 324
Query: 1071 INLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPL 1250
I+L E E+ R+V+AVDG+ +N+S + +LG+ +LPGY+DPY GR L
Sbjct: 325 ISLARRPDRRERMLSSLWEMEVSGRVVDAVDGRTLNSSLMRSLGVDLLPGYQDPYSGRTL 384
Query: 1251 TKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLI 1430
TKGE+GCFLSHY+IW+EVV R L + LVFEDD+RFE F+ RL LM +VE E L WDLI
Sbjct: 385 TKGEVGCFLSHYSIWEEVVARRLARILVFEDDVRFESNFRGRLERLMEEVEAEKLPWDLI 444
Query: 1431 YVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFL 1610
Y+GRK++ E E AV + +LV A YSYWTLAYV+SL GARKLLA++PL +MLPVDEFL
Sbjct: 445 YLGRKQVNPEE-EAAVEGLPHLVVAGYSYWTLAYVLSLAGARKLLASQPLHRMLPVDEFL 503
Query: 1611 PVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNE 1775
P+MFD+HP +YKAHF PR+LRAFS PLL PTHY GD ++SDTETS W+++
Sbjct: 504 PIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDDD 558
>ref|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate 5-dioxygenase
1 precursor (Lysyl hydroxylase 1) (LH1) isoform 3 [Canis
familiaris].
Length = 728
Score = 76.6 bits (187), Expect = 9e-14
Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 2/279 (0%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ + L L L +PR++ L++ HN + + A + ++L S
Sbjct: 286 PTVLVGVFIEQPTPFLSLFFRRLLHLHYPRKQMRLFI---HNHEQHHKAQVEQFLAEHGS 342
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 343 EYQSVKL------------VGP----EVRVANADARNMGADLCRQDRGCTYYFSVDADVA 386
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P TL LLI +NK V+AP++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 387 LTEPKTLRLLIEQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 446
Query: 723 AVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYG 902
VP + + +LI K ++ + D + F + +Q +V M++ N+ +G
Sbjct: 447 NVPYISNIYLI---KGSALRAELQHTDLFHHSRLDPDMAFCANIRQQDVFMFLTNRHTFG 503
Query: 903 FLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFI 1019
L SL S +H L + +P ++I
Sbjct: 504 HL-------LSLDSYQTSHLHNDLWEVFSNPEDWKEKYI 535
>ref|XP_544565.2| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate 5-dioxygenase
1 precursor (Lysyl hydroxylase 1) (LH1) isoform 1 [Canis
familiaris].
Length = 727
Score = 76.6 bits (187), Expect = 9e-14
Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 2/279 (0%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ + L L L +PR++ L++ HN + + A + ++L S
Sbjct: 286 PTVLVGVFIEQPTPFLSLFFRRLLHLHYPRKQMRLFI---HNHEQHHKAQVEQFLAEHGS 342
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 343 EYQSVKL------------VGP----EVRVANADARNMGADLCRQDRGCTYYFSVDADVA 386
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P TL LLI +NK V+AP++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 387 LTEPKTLRLLIEQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 446
Query: 723 AVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYG 902
VP + + +LI K ++ + D + F + +Q +V M++ N+ +G
Sbjct: 447 NVPYISNIYLI---KGSALRAELQHTDLFHHSRLDPDMAFCANIRQQDVFMFLTNRHTFG 503
Query: 903 FLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFI 1019
L SL S +H L + +P ++I
Sbjct: 504 HL-------LSLDSYQTSHLHNDLWEVFSNPEDWKEKYI 535
>ref|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 1 [Canis familiaris].
Length = 740
Score = 74.7 bits (182), Expect = 3e-13
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 6/195 (3%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRVL+A+ LP L L L +P +R L++ HN++ +
Sbjct: 298 PRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFL---HNNE---------------V 339
Query: 369 YHSVE----WRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVD 533
YH W ++ S GP+ + R A+ S R D ++ +D
Sbjct: 340 YHEPHIADSWPQLQDHFSAVKLVGPEEALTPG-----EARDMAMDSCRQDPECEFYFSLD 394
Query: 534 ADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
AD +I NP TL +LI EN+ V+APML +SNFW ++ YY R+ Y+ + +R R
Sbjct: 395 ADAVITNPQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKR 454
Query: 711 QGCFAVPMVHSTFLI 755
G + VP + ++I
Sbjct: 455 VGVWNVPYISQAYVI 469
>ref|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 2 [Canis familiaris].
Length = 754
Score = 74.7 bits (182), Expect = 3e-13
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 6/195 (3%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRVL+A+ LP L L L +P +R L++ HN++ +
Sbjct: 298 PRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFL---HNNE---------------V 339
Query: 369 YHSVE----WRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVD 533
YH W ++ S GP+ + R A+ S R D ++ +D
Sbjct: 340 YHEPHIADSWPQLQDHFSAVKLVGPEEALTPG-----EARDMAMDSCRQDPECEFYFSLD 394
Query: 534 ADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
AD +I NP TL +LI EN+ V+APML +SNFW ++ YY R+ Y+ + +R R
Sbjct: 395 ADAVITNPQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKR 454
Query: 711 QGCFAVPMVHSTFLI 755
G + VP + ++I
Sbjct: 455 VGVWNVPYISQAYVI 469
>ref|XP_865452.1| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate
5-dioxygenase 1 precursor (Lysyl hydroxylase 1) (LH1)
isoform 2 [Canis familiaris].
Length = 744
Score = 68.9 bits (167), Expect = 2e-11
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ + L L L +PR++ L++ HN + + A + ++L S
Sbjct: 285 PTVLVGVFIEQPTPFLSLFFRRLLHLHYPRKQMRLFI---HNHEQHHKAQVEQFLAEHGS 341
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 342 EYQSVKL------------VGP----EVRVANADARNMGADLCRQDRGCTYYFSVDADVA 385
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P TL LLI +NK V+AP++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 386 LTEPKTLRLLIEQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 445
Query: 723 AVPMVHSTFLI 755
VP + + +LI
Sbjct: 446 NVPYISNIYLI 456
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,335,464
Number of extensions: 2183333
Number of successful extensions: 10517
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10433
Number of HSP's successfully gapped: 11
Length of query: 730
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 620
Effective length of database: 15,207,544
Effective search space: 9428677280
Effective search space used: 9428677280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078932.2| procollagen galactosyltransferase 1 precursor [... 1135 0.0
Alignment gi|NP_055916.1| procollagen galactosyltransferase 2 precursor [... 818 0.0
Alignment gi|NP_057258.3| glycosyltransferase 25 family member 3 precurso... 640 0.0
Alignment gi|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 73 1e-12
Alignment gi|NP_000926.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 69 1e-11
Alignment gi|NP_891988.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 67 7e-11
Alignment gi|NP_001075.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 67 9e-11
>ref|NP_078932.2| procollagen galactosyltransferase 1 precursor [Homo sapiens].
Length = 622
Score = 1135 bits (2936), Expect = 0.0
Identities = 564/623 (90%), Positives = 571/623 (91%)
Frame = +3
Query: 33 MAAAPRVCRRHRQXXXXXXXXXXXXXXXXXXXXXXXXYFPEERWSPESPLQAPRVLIALL 212
MAAAPR RR Q YFPEERWSPESPLQAPRVLIALL
Sbjct: 1 MAAAPRAGRRRGQPLLALLLLLLAPLPPGAPPGADA-YFPEERWSPESPLQAPRVLIALL 59
Query: 213 ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 392
ARNAAHALP+TLGALERLRHPRERTALWVATDHN DNTS VLREWLVAVKSLYHSVEWRP
Sbjct: 60 ARNAAHALPTTLGALERLRHPRERTALWVATDHNMDNTSTVLREWLVAVKSLYHSVEWRP 119
Query: 393 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 572
AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL
Sbjct: 120 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 179
Query: 573 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL 752
LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDR+GCFAVPMVHSTFL
Sbjct: 180 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRRGCFAVPMVHSTFL 239
Query: 753 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 932
IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKE YGFLPVPLR+HS
Sbjct: 240 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEEYGFLPVPLRAHS 299
Query: 933 SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKXXXXXXXXXX 1112
+LQDEAESFMHVQLEVMVKHPPAEPS+FIS PTK PDKMGFDEVFMINL+
Sbjct: 300 TLQDEAESFMHVQLEVMVKHPPAEPSRFISAPTKTPDKMGFDEVFMINLRRRQDRRERML 359
Query: 1113 XXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 1292
QEIE RLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI
Sbjct: 360 RALQAQEIECRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 419
Query: 1293 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 1472
WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK
Sbjct: 420 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 479
Query: 1473 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 1652
AVPRVRNLVEADYSYWTLAYVISLQGARKLLAA PLSKMLPVDEFLPVMFDKHPVSEYKA
Sbjct: 480 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAAEPLSKMLPVDEFLPVMFDKHPVSEYKA 539
Query: 1653 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSRKMREQQA 1832
HFS RNL AFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKS+KMREQQA
Sbjct: 540 HFSLRNLHAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSQKMREQQA 599
Query: 1833 LSREAKNSDVLQSPLDSAARDEL 1901
LSREAKNSDVLQSPLDSAARDEL
Sbjct: 600 LSREAKNSDVLQSPLDSAARDEL 622
>ref|NP_055916.1| procollagen galactosyltransferase 2 precursor [Homo sapiens].
Length = 626
Score = 818 bits (2114), Expect = 0.0
Identities = 381/581 (65%), Positives = 467/581 (80%), Gaps = 3/581 (0%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESPLQ+P VL+A+LARNAAH LP LG LERL +P+ R A+W ATDHN DNT+ + REW
Sbjct: 46 PESPLQSPTVLVAVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEIFREW 105
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L V+ LYH VEWRP +EP SYPDE GPKHW SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 106 LKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILF 165
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+LLIAENKT+VAPML+SR YSNFWCG+T +G+YKRTP Y+ IR+
Sbjct: 166 IDVDNFLTNPQTLNLLIAENKTIVAPMLESRGLYSNFWCGITPKGFYKRTPDYVQIREWK 225
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCN 887
R GCF VPMVHSTFLIDLRK AS L FYPPH DYTW+FDDIIVFAFS +QA +QMY+CN
Sbjct: 226 RTGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCN 285
Query: 888 KEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVF 1067
+E YG+LP+PL+ H +LQ++ E+ +HVQ+E M+ PP EPSQ++SV K PDKMGFDE+F
Sbjct: 286 REHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIF 345
Query: 1068 MINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRP 1247
MINLK EQEIE ++VEAVDGKA+NTSQ++AL I+MLPGYRDPY RP
Sbjct: 346 MINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRP 405
Query: 1248 LTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDL 1427
LT+GE+GCFLSHY++WKEV+DR L+K+LV EDD+RFE FK++LM LM ++++ LDW+L
Sbjct: 406 LTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQLDWEL 465
Query: 1428 IYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEF 1607
IY+GRKRMQV+ PEKAVP V NLVEADYSYWTL YVISL+GA+KL+ A P KMLPVDEF
Sbjct: 466 IYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEF 525
Query: 1608 LPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKT 1787
LPVM++KHPV+EYK ++ R+L+AFS EPLLIYPTHYTG GY+SDTETS +W+NE V T
Sbjct: 526 LPVMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVAT 585
Query: 1788 DWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
DWDR + K R+Q + AKN++ L P LD+ +RDEL
Sbjct: 586 DWDRTHAWKSRKQSRIYSNAKNTEALPPPTSLDTVPSRDEL 626
>ref|NP_057258.3| glycosyltransferase 25 family member 3 precursor [Homo sapiens].
Length = 595
Score = 640 bits (1652), Expect = 0.0
Identities = 310/535 (57%), Positives = 392/535 (73%)
Frame = +3
Query: 171 ESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWL 350
ESPL P V++A+LARNA H+LP LGALERL +PR R ALW ATDHN DNT+ +L+EWL
Sbjct: 27 ESPL--PAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWL 84
Query: 351 VAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFV 530
AV Y +V WRP EPR YPDEEGPKHW+ R++ +M+L+Q AL AR+ ADYILF
Sbjct: 85 AAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGADYILFA 144
Query: 531 DADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
D DN++ N TL LL+ + VVAPMLDS+ YSNFWCG+T QGYY+RT Y P + R R
Sbjct: 145 DTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQR 204
Query: 711 QGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNK 890
+GCF VPMVHSTFL LR + LAFYPPHP+YTW FDDIIVFA++C+ A V ++VCN+
Sbjct: 205 RGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNE 264
Query: 891 EVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFM 1070
YG++ VP++SH L+DE +F+H+ LE +V P + S ++ P+K+P K+GFDEVF+
Sbjct: 265 HRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPRMQASAHVTRPSKRPSKIGFDEVFV 324
Query: 1071 INLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPL 1250
I+L E EI R+V+AVDG +N+S + LG+ +LPGY+DPY GR L
Sbjct: 325 ISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNLGVDLLPGYQDPYSGRTL 384
Query: 1251 TKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLI 1430
TKGE+GCFLSHY+IW+EVV RGL + LVFEDD+RFE F+ RL LM DVE E L WDLI
Sbjct: 385 TKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLI 444
Query: 1431 YVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFL 1610
Y+GRK++ E E AV + LV A YSYWTLAY + L GARKLLA++PL +MLPVDEFL
Sbjct: 445 YLGRKQVNPE-KETAVEGLPGLVVAGYSYWTLAYALRLAGARKLLASQPLRRMLPVDEFL 503
Query: 1611 PVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNE 1775
P+MFD+HP +YKAHF PR+L AFS +PLL PTHY GD ++SDTETS W+++
Sbjct: 504 PIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYAGDAEWLSDTETSSPWDDD 558
>ref|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Homo
sapiens].
Length = 727
Score = 72.8 bits (177), Expect = 1e-12
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 2/242 (0%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ + + L RL +P++ L++ HN + + A + E+L S
Sbjct: 286 PTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFI---HNHEQHHKAQVEEFLAQHGS 342
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 343 EYQSVKL------------VGP----EVRMANADARNMGADLCRQDRSCTYYFSVDADVA 386
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P++L LLI +NK V+AP++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 387 LTEPNSLRLLIQQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 446
Query: 723 AVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYG 902
VP + + +LI K ++ + D + F + +Q +V M++ N+ G
Sbjct: 447 NVPYISNIYLI---KGSALRGELQSSDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHTLG 503
Query: 903 FL 908
L
Sbjct: 504 HL 505
>ref|NP_000926.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2
precursor [Homo sapiens].
Length = 737
Score = 69.3 bits (168), Expect = 1e-11
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Frame = +3
Query: 498 RDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKR 674
+D DY VDAD ++ NP TL +LI +N+ ++AP++ +SNFW ++ GYY R
Sbjct: 381 QDEKCDYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYAR 440
Query: 675 TPAYIPIRKRDRQGCFAVPMVHSTFLI---DLRKAASRNLAFYPPHPDYTWSFDDIIVFA 845
+ Y+ I + +R G + VP + + +LI LR + F D +
Sbjct: 441 SEDYVDIVQGNRVGVWNVPYMANVYLIKGKTLRSEMNERNYFVRD------KLDPDMALC 494
Query: 846 FSCKQAEVQMYVCNKEVYGFL 908
+ ++ V MY+ N+ +G L
Sbjct: 495 RNAREMGVFMYISNRHEFGRL 515
>ref|NP_891988.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1
precursor [Homo sapiens].
Length = 758
Score = 67.0 bits (162), Expect = 7e-11
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +3
Query: 498 RDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKR 674
+D DY VDAD ++ NP TL +LI +N+ ++AP++ +SNFW ++ GYY R
Sbjct: 381 QDEKCDYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYAR 440
Query: 675 TPAYIPIRKRDRQGCFAVPMVHSTFLI 755
+ Y+ I + +R G + VP + + +LI
Sbjct: 441 SEDYVDIVQGNRVGVWNVPYMANVYLI 467
>ref|NP_001075.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Homo
sapiens].
Length = 738
Score = 66.6 bits (161), Expect = 9e-11
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 2/191 (1%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRV +A+ LP L L L +P +R L++ HN++ V E +A
Sbjct: 296 PRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFL---HNNE----VFHEPHIADS-- 346
Query: 369 YHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVDADNL 545
W ++ S GP+ + R A+ R D ++ +DAD +
Sbjct: 347 -----WPQLQDHFSAVKLVGPEEALSPG-----EARDMAMDLCRQDPECEFYFSLDADAV 396
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ N TL +LI EN+ V+APML +SNFW ++ YY R+ Y+ + +R R G +
Sbjct: 397 LTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGVW 456
Query: 723 AVPMVHSTFLI 755
VP + ++I
Sbjct: 457 NVPYISQAYVI 467
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,687,299
Number of extensions: 2139284
Number of successful extensions: 9809
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9748
Number of HSP's successfully gapped: 7
Length of query: 730
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 620
Effective length of database: 14,671,124
Effective search space: 9096096880
Effective search space used: 9096096880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666323.2| procollagen galactosyltransferase 1 precursor [... 1105 0.0
Alignment gi|NP_808424.3| procollagen galactosyltransferase 2 precursor [... 818 0.0
Alignment gi|NP_997181.1| glycosyltransferase 25 family member 3 precurso... 633 0.0
Alignment gi|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 80 7e-15
Alignment gi|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 74 6e-13
Alignment gi|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 70 7e-12
Alignment gi|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 68 3e-11
>ref|NP_666323.2| procollagen galactosyltransferase 1 precursor [Mus musculus].
Length = 617
Score = 1105 bits (2857), Expect = 0.0
Identities = 538/586 (91%), Positives = 556/586 (94%)
Frame = +3
Query: 144 YFPEERWSPESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDN 323
YFPEERWSPESPLQAPRVLIALLARNAA ALP+TLGALE+LRHPRERTALWVATDHN+DN
Sbjct: 32 YFPEERWSPESPLQAPRVLIALLARNAAPALPATLGALEQLRHPRERTALWVATDHNTDN 91
Query: 324 TSAVLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARD 503
TSA+LREWLVAVK LYHSVEWRPAEEP SYPDEEGPKHWSDSRYEHVMKLRQAALKSARD
Sbjct: 92 TSAILREWLVAVKGLYHSVEWRPAEEPSSYPDEEGPKHWSDSRYEHVMKLRQAALKSARD 151
Query: 504 MWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPA 683
MWADYILF+D DNLI NPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPA
Sbjct: 152 MWADYILFMDIDNLITNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPA 211
Query: 684 YIPIRKRDRQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQA 863
YIPIRKRDR+GCFAVPMVHSTFLIDLRKAASRNLAFYP HPDYTWSFDDIIVFAFSCKQA
Sbjct: 212 YIPIRKRDRRGCFAVPMVHSTFLIDLRKAASRNLAFYPTHPDYTWSFDDIIVFAFSCKQA 271
Query: 864 EVQMYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPD 1043
EVQMYVCNKEVYGFLPVPLR+HSSLQDEAESFMHVQLEVMVKHPP + S+FIS P K D
Sbjct: 272 EVQMYVCNKEVYGFLPVPLRAHSSLQDEAESFMHVQLEVMVKHPPVQLSRFISAPRKTSD 331
Query: 1044 KMGFDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGY 1223
KMGFDEVFMINLK EQEI+ +LVEAVDGKAMNTSQVEA+GIQMLPGY
Sbjct: 332 KMGFDEVFMINLKRRRDRRERMLRALHEQEIDCQLVEAVDGKAMNTSQVEAMGIQMLPGY 391
Query: 1224 RDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVE 1403
RDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVE
Sbjct: 392 RDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVE 451
Query: 1404 REGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLS 1583
REGLDWDLIYVGRKRMQVEHPEKAVP VRNLVEADYSYWTLAYVISLQGA+KLLAA+PL+
Sbjct: 452 REGLDWDLIYVGRKRMQVEHPEKAVPHVRNLVEADYSYWTLAYVISLQGAQKLLAAKPLA 511
Query: 1584 KMLPVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVV 1763
KMLPVDEFLPVMFDKHP+SEYK+HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVV
Sbjct: 512 KMLPVDEFLPVMFDKHPMSEYKSHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVV 571
Query: 1764 WNNEHVKTDWDRAKSRKMREQQALSREAKNSDVLQSPLDSAARDEL 1901
WNNE VKTDWDRAKS+KMREQQALSREAKNSDVLQSPLDS ARDEL
Sbjct: 572 WNNEQVKTDWDRAKSQKMREQQALSREAKNSDVLQSPLDSTARDEL 617
>ref|NP_808424.3| procollagen galactosyltransferase 2 precursor [Mus musculus].
Length = 625
Score = 818 bits (2113), Expect = 0.0
Identities = 381/581 (65%), Positives = 464/581 (79%), Gaps = 3/581 (0%)
Frame = +3
Query: 168 PESPLQAPRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREW 347
PESP Q P V + +LARNAAH LP LG LERL +P+ R A+W ATDHN DNT+ +LREW
Sbjct: 45 PESPPQKPTVFVVVLARNAAHTLPYFLGCLERLDYPKSRMAIWAATDHNVDNTTEILREW 104
Query: 348 LVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILF 527
L +V+ LYH VEWRP EP SYPDE GPKHW +SR+ HVMKLRQAAL++AR+ W+DYILF
Sbjct: 105 LKSVQRLYHYVEWRPMNEPESYPDEIGPKHWPNSRFSHVMKLRQAALRTAREKWSDYILF 164
Query: 528 VDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRD 707
+D DN + NP TL+L+I ENKT+VAPML+SR YSNFWCG+T QG+YKRTP Y+ IR+
Sbjct: 165 IDVDNFLTNPQTLNLMIVENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYLQIREWK 224
Query: 708 RQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCN 887
R GCF VPMVHSTFLIDLRK AS LAFYPPH DYTW+FDDIIVFAFS +QA +QMY+CN
Sbjct: 225 RMGCFPVPMVHSTFLIDLRKEASDKLAFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCN 284
Query: 888 KEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVF 1067
KE YG+LP+PL+ H +LQ++ E+ +HVQ+E M+ HPP EPSQF+SV K PDKMGFDE+F
Sbjct: 285 KEHYGYLPIPLKPHQTLQEDVENLIHVQIEAMIDHPPMEPSQFVSVVPKYPDKMGFDEIF 344
Query: 1068 MINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRP 1247
MINLK EQEIE ++VEAVDGKA+NTSQ++A I+MLPGYRDPY RP
Sbjct: 345 MINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKAWNIEMLPGYRDPYSSRP 404
Query: 1248 LTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDL 1427
LT+GE+GCFLSH+++WKEV+DR L+K+LV EDD+RFE FKR+LM LM D+++ LDW+L
Sbjct: 405 LTRGEIGCFLSHFSVWKEVIDRELEKTLVIEDDVRFEHQFKRKLMKLMEDIDKAQLDWEL 464
Query: 1428 IYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEF 1607
IY+GRKRMQV+ PEKAVP V NLVEADYSYWTL Y ISL+GA+KL+ A P KMLPVDEF
Sbjct: 465 IYIGRKRMQVKEPEKAVPNVVNLVEADYSYWTLGYAISLEGAQKLVGADPFGKMLPVDEF 524
Query: 1608 LPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKT 1787
LP+M++KHPV+EYK ++ R+L+AFS EPLLIYPTHYTG GY+SDTETS +W+NE V T
Sbjct: 525 LPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVAT 584
Query: 1788 DWDRAKSRKMREQQALSREAKNSDVLQSP--LDSA-ARDEL 1901
DWDR S K R+Q + AKN++ L P LD+ +RDEL
Sbjct: 585 DWDRTHSWKSRKQGHIRSTAKNTEALPPPTSLDTVPSRDEL 625
>ref|NP_997181.1| glycosyltransferase 25 family member 3 precursor [Mus musculus].
Length = 592
Score = 633 bits (1632), Expect = 0.0
Identities = 306/529 (57%), Positives = 389/529 (73%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
P V++A+LARNA H+LP LGALERL +PR R ALW ATDHN DNT+ +LREWL AV
Sbjct: 28 PTVVLAILARNAEHSLPHYLGALERLDYPRARLALWCATDHNMDNTTGMLREWLAAVGRD 87
Query: 369 YHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLI 548
Y +V W+P EE RSYPDE+GPKHW+ R++ +M+LRQ AL ARD ADYILF D DN++
Sbjct: 88 YATVVWKPEEEARSYPDEQGPKHWTKERHQFLMELRQEALAFARDWGADYILFADTDNIL 147
Query: 549 LNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAV 728
N TL LLI VVAPMLDS+ YSNFWCG+T QGYY+RT Y P + R RQGCF V
Sbjct: 148 TNNQTLKLLIDRQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRQGCFRV 207
Query: 729 PMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFL 908
PMVHSTFL+ L+ + LAFYPPHP+Y+W FDDIIVFA++C+ A V M+VCN YG++
Sbjct: 208 PMVHSTFLLSLQTEETARLAFYPPHPNYSWPFDDIIVFAYACQAAGVSMHVCNDHRYGYM 267
Query: 909 PVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKXX 1088
V ++ H SL++E +F+H+ LE +V PP S +S P KK KMGFDEVF+I+L
Sbjct: 268 NVVVKPHQSLEEEKTNFIHLILEALVDGPPMLASAHVSRPPKKLSKMGFDEVFVISLARR 327
Query: 1089 XXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELG 1268
E EI +++V+AVDG+ +N+S ++ LG+ +LPGY+DPY G LTKGE+G
Sbjct: 328 PQRRARMLSSLWEMEISAQVVDAVDGRTLNSSILKHLGVDLLPGYQDPYSGHTLTKGEVG 387
Query: 1269 CFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKR 1448
CFLSHY+IW+EVV RGL + +VFEDD+RF+ F+RRL LM DV + L WDLIY+GRK+
Sbjct: 388 CFLSHYSIWEEVVARGLARVVVFEDDVRFKDNFRRRLERLMEDVLIQKLSWDLIYLGRKQ 447
Query: 1449 MQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDK 1628
+ E E AV + LV A YSYWTLAY +SL GARKLLA++PL +MLPVDEFLPVMFD+
Sbjct: 448 VNPEE-EVAVEGLPGLVVAGYSYWTLAYTLSLAGARKLLASQPLHRMLPVDEFLPVMFDR 506
Query: 1629 HPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNE 1775
HP +YKA+F PR+L+AFS PLL PTHY+GD ++SDTETS W+++
Sbjct: 507 HPNDQYKAYFWPRDLQAFSARPLLASPTHYSGDAEWLSDTETSSPWDDD 555
>ref|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Mus
musculus].
Length = 728
Score = 80.1 bits (196), Expect = 7e-15
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 4/244 (1%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAV-LREWLVAVKS 365
P VL+ + L L RLR+P+++ L++ HN + + + ++L S
Sbjct: 287 PTVLVGVFIEQPTPFLSLFFLRLLRLRYPQKQMRLFI---HNQERHHKLQVEQFLAEHGS 343
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 344 EYQSVKL------------VGP----EVRMANADARNMGADLCRQDQTCTYYFSVDADVA 387
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P++L LLI +NK V+AP++ +SNFW G+++ GYY R+ Y+ I + R G +
Sbjct: 388 LTEPNSLRLLIEQNKNVIAPLMTRHGRLWSNFWGGLSADGYYARSEDYVDIVQGRRVGVW 447
Query: 723 AVPMVHSTFLI--DLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEV 896
VP + + +LI +A +N+ + + D + F + +Q EV M++ N+
Sbjct: 448 NVPYISNIYLIKGSALRAELQNVDLF-----HYSKLDSDMSFCANVRQQEVFMFLTNRHT 502
Query: 897 YGFL 908
+G L
Sbjct: 503 FGHL 506
>ref|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Mus
musculus].
Length = 741
Score = 73.6 bits (179), Expect = 6e-13
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 6/195 (3%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
PRVL+A+ LP L L L +P +R +L++ HNS+ +
Sbjct: 299 PRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRISLFL---HNSE---------------V 340
Query: 369 YHSVE----WRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVD 533
YH W ++ S GP+ + + R A+ S R + ++ +D
Sbjct: 341 YHEPHIADAWPQLQDHFSAVKLVGPEEALSAG-----EARDMAMDSCRQNPECEFYFSLD 395
Query: 534 ADNLILNPDTLSLLIAENKTVVAPMLDSRA-AYSNFWCGMTSQGYYKRTPAYIPIRKRDR 710
AD ++ NP+TL +LI +N+ V+APML +SNFW ++ YY R+ Y+ + +R R
Sbjct: 396 ADAVLTNPETLRVLIEQNRKVIAPMLSRHGKLWSNFWGALSPNEYYARSEDYVELVQRKR 455
Query: 711 QGCFAVPMVHSTFLI 755
G + VP + ++I
Sbjct: 456 VGVWNVPYISQAYVI 470
>ref|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2 [Mus
musculus].
Length = 737
Score = 70.1 bits (170), Expect = 7e-12
Identities = 61/245 (24%), Positives = 101/245 (41%), Gaps = 5/245 (2%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
P+V + + LP L L L +P+E L++ HN K +
Sbjct: 296 PKVTLGVFIEQPTPFLPRFLNLLLTLDYPKEALQLFI---HN---------------KEV 337
Query: 369 YHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVDADNL 545
YH + + + + D K + R + R D DY VDAD +
Sbjct: 338 YHEKDIKVFVDKAKH-DISSIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYFSVDADVV 396
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ NP TL LI +N+ ++AP++ +SNFW ++ GYY R+ Y+ I + +R G +
Sbjct: 397 LTNPRTLKFLIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIW 456
Query: 723 AVPMVHSTFLID---LRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKE 893
VP + + +LI LR + F D + + + V MY+ N+
Sbjct: 457 NVPYMANVYLIQGKTLRSEMNERNYFVRD------KLDPDMALCRNARDMGVFMYISNRH 510
Query: 894 VYGFL 908
+G L
Sbjct: 511 EFGRL 515
>ref|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 [Mus
musculus].
Length = 758
Score = 68.2 bits (165), Expect = 3e-11
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 2/191 (1%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
P+V + + LP L L L +P+E L++ HN K +
Sbjct: 296 PKVTLGVFIEQPTPFLPRFLNLLLTLDYPKEALQLFI---HN---------------KEV 337
Query: 369 YHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSAR-DMWADYILFVDADNL 545
YH + + + + D K + R + R D DY VDAD +
Sbjct: 338 YHEKDIKVFVDKAKH-DISSIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYFSVDADVV 396
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ NP TL LI +N+ ++AP++ +SNFW ++ GYY R+ Y+ I + +R G +
Sbjct: 397 LTNPRTLKFLIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIW 456
Query: 723 AVPMVHSTFLI 755
VP + + +LI
Sbjct: 457 NVPYMANVYLI 467
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,271,913
Number of extensions: 1764625
Number of successful extensions: 8438
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8265
Number of HSP's successfully gapped: 7
Length of query: 730
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 621
Effective length of database: 12,343,635
Effective search space: 7665397335
Effective search space used: 7665397335
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123541.1| PREDICTED: procollagen galactosyltransferase... 1181 0.0
Alignment gi|XP_001925614.3| PREDICTED: glycosyltransferase 25 family mem... 601 e-172
Alignment gi|XP_003353725.1| PREDICTED: glycosyltransferase 25 family mem... 585 e-167
Alignment gi|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate... 80 4e-15
Alignment gi|XP_003132514.2| PREDICTED: LOW QUALITY PROTEIN: procollagen-... 65 2e-10
>ref|XP_003123541.1| PREDICTED: procollagen galactosyltransferase 1-like [Sus scrofa].
Length = 623
Score = 1181 bits (3054), Expect = 0.0
Identities = 584/623 (93%), Positives = 585/623 (93%)
Frame = +3
Query: 33 MAAAPRVCRRHRQXXXXXXXXXXXXXXXXXXXXXXXXYFPEERWSPESPLQAPRVLIALL 212
MAAAPRVCRRHRQ YFPEERWSPESPLQAPRVLIALL
Sbjct: 1 MAAAPRVCRRHRQPLLALLLLLLLALSPPGGPPGAAAYFPEERWSPESPLQAPRVLIALL 60
Query: 213 ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 392
ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP
Sbjct: 61 ARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSLYHSVEWRP 120
Query: 393 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 572
AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL
Sbjct: 121 AEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSL 180
Query: 573 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL 752
LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL
Sbjct: 181 LIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCFAVPMVHSTFL 240
Query: 753 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 932
IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS
Sbjct: 241 IDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRSHS 300
Query: 933 SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKXXXXXXXXXX 1112
SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLK
Sbjct: 301 SLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMGFDEVFMINLKRRQDRRDRML 360
Query: 1113 XXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 1292
EQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI
Sbjct: 361 RALQEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNI 420
Query: 1293 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 1472
WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK
Sbjct: 421 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEK 480
Query: 1473 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 1652
AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA
Sbjct: 481 AVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKMLPVDEFLPVMFDKHPVSEYKA 540
Query: 1653 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSRKMREQQA 1832
HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKS+KMREQQA
Sbjct: 541 HFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSQKMREQQA 600
Query: 1833 LSREAKNSDVLQSPLDSAARDEL 1901
LSREAKNSDVLQSPLDSAARDEL
Sbjct: 601 LSREAKNSDVLQSPLDSAARDEL 623
>ref|XP_001925614.3| PREDICTED: glycosyltransferase 25 family member 3-like isoform 1 [Sus
scrofa].
Length = 555
Score = 601 bits (1549), Expect = e-172
Identities = 287/492 (58%), Positives = 363/492 (73%)
Frame = +3
Query: 300 ATDHNSDNTSAVLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQ 479
ATDHN D+T+ +L+EWL AV Y +V WRP EPRSYPDEEGPKHW+ R++ +M+L+Q
Sbjct: 28 ATDHNEDSTTEMLQEWLAAVGEDYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQ 87
Query: 480 AALKSARDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQ 659
AL ARD ADYILF D DN++ N TL LLI + VVAPMLDS+ YSNFWCG+T Q
Sbjct: 88 EALTFARDWGADYILFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQ 147
Query: 660 GYYKRTPAYIPIRKRDRQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIV 839
GYY+RT Y P + R R+GCF VPMVHSTFLI LR + L+FYPPHP+YTW FDDIIV
Sbjct: 148 GYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIV 207
Query: 840 FAFSCKQAEVQMYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFI 1019
FA++C+ A V ++VCN+ YG++ VP++SH L+DE +F+H+ LE +V PP S +
Sbjct: 208 FAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHV 267
Query: 1020 SVPTKKPDKMGFDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEAL 1199
S P K+P KMGFDEVF+I+L E EI R+V+AVDG+ +N+S + L
Sbjct: 268 SRPPKRPSKMGFDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRL 327
Query: 1200 GIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRL 1379
G+ +LPGY+DPY GR LTKGE+GCFLSHY+IW+EVV +GL + +VFEDD+RFE F+ RL
Sbjct: 328 GVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRL 387
Query: 1380 MNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARK 1559
LM +VE E L WDLIY+GRK++ E E AV + LV A YSYWTLAYV+SL GARK
Sbjct: 388 ERLMEEVEAEKLPWDLIYLGRKQVNPEE-EAAVEGLPQLVVAGYSYWTLAYVLSLAGARK 446
Query: 1560 LLAARPLSKMLPVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYV 1739
LLA++PL +MLPVDEFLP+MFD+HP +YKAHF PR+LRAFS PLL PTHY GD ++
Sbjct: 447 LLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWL 506
Query: 1740 SDTETSVVWNNE 1775
SDTETS W+++
Sbjct: 507 SDTETSSPWDDD 518
>ref|XP_003353725.1| PREDICTED: glycosyltransferase 25 family member 3-like isoform 2 [Sus
scrofa].
Length = 517
Score = 585 bits (1508), Expect = e-167
Identities = 280/481 (58%), Positives = 354/481 (73%)
Frame = +3
Query: 333 VLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWA 512
+L+EWL AV Y +V WRP EPRSYPDEEGPKHW+ R++ +M+L+Q AL ARD A
Sbjct: 1 MLQEWLAAVGEDYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGA 60
Query: 513 DYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIP 692
DYILF D DN++ N TL LLI + VVAPMLDS+ YSNFWCG+T QGYY+RT Y P
Sbjct: 61 DYILFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFP 120
Query: 693 IRKRDRQGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQ 872
+ R R+GCF VPMVHSTFLI LR + L+FYPPHP+YTW FDDIIVFA++C+ A V
Sbjct: 121 TKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIVFAYACQAAGVS 180
Query: 873 MYVCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPAEPSQFISVPTKKPDKMG 1052
++VCN+ YG++ VP++SH L+DE +F+H+ LE +V PP S +S P K+P KMG
Sbjct: 181 VHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHVSRPPKRPSKMG 240
Query: 1053 FDEVFMINLKXXXXXXXXXXXXXXEQEIESRLVEAVDGKAMNTSQVEALGIQMLPGYRDP 1232
FDEVF+I+L E EI R+V+AVDG+ +N+S + LG+ +LPGY+DP
Sbjct: 241 FDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRLGVDLLPGYQDP 300
Query: 1233 YHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREG 1412
Y GR LTKGE+GCFLSHY+IW+EVV +GL + +VFEDD+RFE F+ RL LM +VE E
Sbjct: 301 YSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRLERLMEEVEAEK 360
Query: 1413 LDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAARPLSKML 1592
L WDLIY+GRK++ E E AV + LV A YSYWTLAYV+SL GARKLLA++PL +ML
Sbjct: 361 LPWDLIYLGRKQVNPEE-EAAVEGLPQLVVAGYSYWTLAYVLSLAGARKLLASQPLRRML 419
Query: 1593 PVDEFLPVMFDKHPVSEYKAHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNN 1772
PVDEFLP+MFD+HP +YKAHF PR+LRAFS PLL PTHY GD ++SDTETS W++
Sbjct: 420 PVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDD 479
Query: 1773 E 1775
+
Sbjct: 480 D 480
>ref|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like
[Sus scrofa].
Length = 725
Score = 80.5 bits (197), Expect = 4e-15
Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 2/242 (0%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSD-NTSAVLREWLVAVKS 365
P VL+ L L L RL++PR+R L++ HN + + A++ ++L
Sbjct: 284 PTVLVGLFIEQPTPFLSLFFQRLLRLQYPRKRMRLFI---HNHEQHHKALVEQFLAEHGD 340
Query: 366 LYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNL 545
Y SV+ GP + R + A +D Y VDAD
Sbjct: 341 EYQSVKL------------VGP----EVRVANADARNMGADLCRQDRSCTYYFSVDADVA 384
Query: 546 ILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPIRKRDRQGCF 722
+ P TL LLI +NK V+AP++ +SNFW +++ GYY R+ Y+ I + R G +
Sbjct: 385 LTEPKTLRLLIEQNKNVLAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVW 444
Query: 723 AVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYG 902
VP + + +LI K ++ + D + F + +Q +V M++ N+ +G
Sbjct: 445 NVPYISNVYLI---KGSALRAELQQTDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHAFG 501
Query: 903 FL 908
L
Sbjct: 502 HL 503
>ref|XP_003132514.2| PREDICTED: LOW QUALITY PROTEIN: procollagen-lysine,2-oxoglutarate
5-dioxygenase 2 [Sus scrofa].
Length = 714
Score = 65.1 bits (157), Expect = 2e-10
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Frame = +3
Query: 189 PRVLIALLARNAAHALPSTLGALERLRHPRERTALWVATDHNSDNTSAVLREWLVAVKSL 368
P V I + LP L L L +P+E L++ HN K +
Sbjct: 252 PNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFI---HN---------------KEV 293
Query: 369 YHS----VEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSA------RDMWADY 518
YH V + A+ + GP+ L QA ++ +D +Y
Sbjct: 294 YHEKNIKVFFDKAKHEITTIKIVGPEE----------NLSQAEARNMGMDFCRQDENCNY 343
Query: 519 ILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAA-YSNFWCGMTSQGYYKRTPAYIPI 695
VDAD ++ NP TL +LI +N+ ++AP++ +SNFW ++ GYY R+ Y+ I
Sbjct: 344 YFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDI 403
Query: 696 RKRDRQGCFAVPMVHSTFLI 755
+ +R G + VP + + +LI
Sbjct: 404 VQGNRVGIWNVPYMANVYLI 423
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,807,976
Number of extensions: 1373370
Number of successful extensions: 6775
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6704
Number of HSP's successfully gapped: 5
Length of query: 730
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 624
Effective length of database: 8,704,850
Effective search space: 5431826400
Effective search space used: 5431826400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002465
(2191 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1013 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1013 bits (511), Expect = 0.0
Identities = 543/555 (97%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 1637 gtcggagtacaaggcccacttctcaccccgaaacctgcgcgccttctccgtggagcccct 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809927 gtcggagtacaaggcccacttctcaccccgaaacctgcgcgccttctccgtggagcccct 59809868
Query: 1697 gctcatctacccgacgcactacacaggggacgacgggtacgtcagcgacacagagacctc 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809867 gctcatctacccgacgcactacacaggggacgacgggtacgtcagcgacacagagacctc 59809808
Query: 1757 ggtcgtgtggaacaacgagcacgtcaagaccgactgggaccgggccaaatcccggaagat 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 59809807 ggtcgtgtggaacaacgagcacgtcaagaccgactgggaccgggccaaatcccagaagat 59809748
Query: 1817 gcgggagcagcaggccttgagccgcgaggccaagaactcagacgtgcttcagtccccact 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809747 gcgggagcagcaggccttgagccgcgaggccaagaactcagacgtgcttcagtccccact 59809688
Query: 1877 ggacagcgctgcccgggacgagctctgaaagctctgaagggcggtggctgcgaagccaaa 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809687 ggacagcgctgcccgggacgagctctgaaagctctgaagggcggtggctgcgaagccaaa 59809628
Query: 1937 gtagccgtttctggcctggctcccactcgctcacccactgggcacagcattggggtnnnn 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809627 gtagccgtttctggcctggctcccactcgctcacccactgggcacagcattggggt-cgg 59809569
Query: 1997 nnnnncctgggcccctggcagtccaaggagggctccccacacagcggcgttcagccagct 2056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809568 gggggcctgggcccctggcagtccaaggagggctccccacacagcggcgttcagccagct 59809509
Query: 2057 cttgctcagcaatcacgtgcacacaggcagcattaacagagtgcctactgcatgccaaga 2116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 59809508 cttgctcagccatcacgtgcacacaggcagcattaacagagtgcctactgcatgccagga 59809449
Query: 2117 acaggtggattgggtgggaacagttcatctctctgtgggccccgagagatgcattaaccg 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59809448 acaggtggattgggtgggaacagttcatctctctgtgggccccgagagatgcattaaccg 59809389
Query: 2177 ggtaccaggttcctg 2191
|||||||||||||||
Sbjct: 59809388 ggtaccaggttcctg 59809374
Score = 583 bits (294), Expect = e-163
Identities = 294/294 (100%)
Strand = Plus / Minus
Query: 3 aaaagcagtttaaaggcgacgcgtggcgcgatggcggcggccccacgcgtgtgccggcga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59831992 aaaagcagtttaaaggcgacgcgtggcgcgatggcggcggccccacgcgtgtgccggcga 59831933
Query: 63 caccggcagccgctcctggcgctgctgctcctgctgctgttggcgctatcacctccgggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59831932 caccggcagccgctcctggcgctgctgctcctgctgctgttggcgctatcacctccgggg 59831873
Query: 123 ggtccgccgggcgccgccgcctacttcccagaggagcgctggagcccggagtcgccgctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59831872 ggtccgccgggcgccgccgcctacttcccagaggagcgctggagcccggagtcgccgctg 59831813
Query: 183 caggcgccgcgtgtgctcatcgcgctgctggcgcgcaacgcggcccacgcgttgccctcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59831812 caggcgccgcgtgtgctcatcgcgctgctggcgcgcaacgcggcccacgcgttgccctcc 59831753
Query: 243 acgctgggggctctggagcggctgcggcacccgcgggagcgcacggcgctgtgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59831752 acgctgggggctctggagcggctgcggcacccgcgggagcgcacggcgctgtgg 59831699
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 1430 ctatgtgggccggaagcggatgcaggtggagcacccggagaaggctgtgccccgtgtgag 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59810335 ctatgtgggccggaagcggatgcaggtggagcacccggagaaggctgtgccccgtgtgag 59810276
Query: 1490 gaatctggtggaggccgactactcctactggacgctggcctacgtgatctccctgcaagg 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59810275 gaatctggtggaggccgactactcctactggacgctggcctacgtgatctccctgcaagg 59810216
Query: 1550 cgcccgcaagctgctggccgcccggccgctctccaagatgctgcccgtggatgagttctt 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59810215 cgcccgcaagctgctggccgcccggccgctctccaagatgctgcccgtggatgagttctt 59810156
Query: 1610 gccggtcatgtttgacaagcacccagtgt 1638
|||||||||||||||||||||||||||||
Sbjct: 59810155 gccggtcatgtttgacaagcacccagtgt 59810127
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 657 cagggctactacaagcgcacgcctgcctacatccccatccgcaagcgggaccgccagggc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59821440 cagggctactacaagcgcacgcctgcctacatccccatccgcaagcgggaccgccagggc 59821381
Query: 717 tgctttgcagtccccatggtgcactcgaccttcctgatcgacctgcggaaggcggcatcc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59821380 tgctttgcagtccccatggtgcactcgaccttcctgatcgacctgcggaaggcggcatcc 59821321
Query: 777 aggaacttggcgttctaccctccccaccctgactacacctggtccttcgatgacatcatt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59821320 aggaacttggcgttctaccctccccaccctgactacacctggtccttcgatgacatcatt 59821261
Query: 837 gtttttgccttctcctgcaagcaggcag 864
||||||||||||||||||||||||||||
Sbjct: 59821260 gtttttgccttctcctgcaagcaggcag 59821233
Score = 272 bits (137), Expect = 8e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 524 gtttgtagatgcagacaacctgatcctcaaccctgacacgctgagcctgctcattgctga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59822476 gtttgtagatgcagacaacctgatcctcaaccctgacacgctgagcctgctcattgctga 59822417
Query: 584 gaacaagacggtggtggcccccatgctggattcccgggccgcgtactccaacttctggtg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59822416 gaacaagacggtggtggcccccatgctggattcccgggccgcgtactccaacttctggtg 59822357
Query: 644 tgggatgacttcccagg 660
|||||||||||||||||
Sbjct: 59822356 tgggatgacttcccagg 59822340
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1169 agccatgaacacgagccaggtggaggcgctgggcatccagatgctgcctggctaccggga 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59812978 agccatgaacacgagccaggtggaggcgctgggcatccagatgctgcctggctaccggga 59812919
Query: 1229 cccctaccatggaaggcccctcaccaagggcgaactgggctgcttcctcagccactataa 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59812918 cccctaccatggaaggcccctcaccaagggcgaactgggctgcttcctcagccactataa 59812859
Query: 1289 catctggaaggaggt 1303
|||||||||||||||
Sbjct: 59812858 catctggaaggaggt 59812844
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 1300 aggttgtggaccgtgggctgcagaaatcactcgtatttgaggacgacctgcgctttgaga 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59811603 aggttgtggaccgtgggctgcagaaatcactcgtatttgaggacgacctgcgctttgaga 59811544
Query: 1360 ttttcttcaagaggcgcctgatgaaccttatgcgggatgtggagcgggagggcctggact 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59811543 ttttcttcaagaggcgcctgatgaaccttatgcgggatgtggagcgggagggcctggact 59811484
Query: 1420 gggacctcat 1429
||||||||||
Sbjct: 59811483 gggacctcat 59811474
Score = 240 bits (121), Expect = 3e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 404 caggtcctacccagacgaggagggccccaaacactggtctgactcacgctatgagcatgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59828832 caggtcctacccagacgaggagggccccaaacactggtctgactcacgctatgagcatgt 59828773
Query: 464 catgaagttgcgccaggcagccctgaaatcagcccgggacatgtgggctgactacatcct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59828772 catgaagttgcgccaggcagccctgaaatcagcccgggacatgtgggctgactacatcct 59828713
Query: 524 g 524
|
Sbjct: 59828712 g 59828712
Score = 236 bits (119), Expect = 4e-59
Identities = 122/123 (99%)
Strand = Plus / Minus
Query: 862 cagaagtccagatgtatgtctgcaacaaggaggtatacggcttcctgccggtgccactgc 921
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59819012 cagaagtccagatgtatgtatgcaacaaggaggtatacggcttcctgccggtgccactgc 59818953
Query: 922 ggtcacacagcagcctccaggacgaggctgagagcttcatgcacgtgcagctggaggtca 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59818952 ggtcacacagcagcctccaggacgaggctgagagcttcatgcacgtgcagctggaggtca 59818893
Query: 982 tgg 984
|||
Sbjct: 59818892 tgg 59818890
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 295 gggtagccacagaccacaactccgacaacacgtcagccgtgcttcgggaatggttggtgg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59830152 gggtagccacagaccacaactccgacaacacgtcagccgtgcttcgggaatggttggtgg 59830093
Query: 355 ccgtgaaaagtttgtaccactctgtagagtggcggccagcagaggagcccaggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59830092 ccgtgaaaagtttgtaccactctgtagagtggcggccagcagaggagcccaggt 59830039
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1060 aggtcttcatgatcaatctgaagcggcgccaggaccggcgggatcgcatgctgcgggcgc 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59813367 aggtcttcatgatcaatctgaagcggcgccaggaccggcgggatcgcatgctgcgggcgc 59813308
Query: 1120 tgcaggagcaggagatagagtcccggctggtggaggctgtggacggcaa 1168
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59813307 tgcaggagcaggagatagagtcccggctggtggaggctgtggacggcaa 59813259
Score = 159 bits (80), Expect = 8e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 984 gtgaaacacccgccagcggagccctcgcagtttatctcggtccccacgaagaagccagac 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59813522 gtgaaacacccgccagcggagccctcgcagtttatctcggtccccacgaagaagccagac 59813463
Query: 1044 aagatgggctttgatgaggt 1063
||||||||||||||||||||
Sbjct: 59813462 aagatgggctttgatgaggt 59813443
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,913,763
Number of extensions: 364
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 13
Length of query: 2191
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2169
Effective length of database: 2,808,408,574
Effective search space: 6091438197006
Effective search space used: 6091438197006
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)