Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos ... 580 e-165
Alignment gi|XP_001257096.1| PREDICTED: DNA-(apurinic or apyrimidinic sit... 106 4e-23
Alignment gi|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 ... 86 8e-17
>ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus].
Length = 318
Score = 580 bits (1494), Expect = e-165
Identities = 283/318 (88%), Positives = 286/318 (89%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKK AV ED + +GAVLYEDPPDQKTSPSGKSA
Sbjct: 1 MPKRGKKGAVVEDAEEPKTEPEAKKSKAGAKKNEKEAVGEGAVLYEDPPDQKTSPSGKSA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLP ELQELSGL HQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAE+DAFVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPL DSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLS SLLPALCDSKI
Sbjct: 241 GELLQAVPLTDSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|XP_001257096.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like, partial
[Bos taurus].
Length = 82
Score = 106 bits (265), Expect = 4e-23
Identities = 53/82 (64%), Positives = 55/82 (67%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKK AV ED + +GAVLYEDPPDQKTSPSGKSA
Sbjct: 1 MPKRGKKGAVVEDAEEPKTEPEAKKSKAGAKKNEKEAVGEGAVLYEDPPDQKTSPSGKSA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLD 366
TLKICSWNVDGLRAWIKKKGLD
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLD 82
>ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus].
Length = 514
Score = 85.9 bits (211), Expect = 8e-17
Identities = 90/324 (27%), Positives = 133/324 (41%), Gaps = 63/324 (19%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGLDWVKEEAP-----------------DILCLQETKCSENKL 432
L++ SWN++G+R+ L V+ E P DI+CLQETK + + L
Sbjct: 2 LRLVSWNINGIRS-----PLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVL 56
Query: 433 PAELQELSGLPHQYWSAPSDKEGYSGV------------------GLLSRQCPLKVSYG- 555
L + G + Y+S ++ GYSGV GLLS Q YG
Sbjct: 57 TEPLAIIEGY-NSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVGCYGN 115
Query: 556 ---IGEEEH---DQEGRVIVAEFD---------AFVLVTAYVPNAGRGLV-RLEYRQRWD 687
+EE D EGR ++ + L+ Y P+A G RL ++ R+
Sbjct: 116 MDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 175
Query: 688 EAFRKFLKGL-ASHKPLVLCGDLNVAHEEID---------LRNPKGNKKNAGFTPQERQG 837
+ + L A+ +++ GDLN AH ID G K G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 838 FGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-LPALCDS 1014
G + P DS+R P A+T W+ + AR N G RLDY L +L + S
Sbjct: 236 SGSHMG--PFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTFQSS 293
Query: 1015 KIRSKALGSDHCPITLYLAL*PFP 1086
+ + +GSDHCP+ L++ P
Sbjct: 294 FLLPEVMGSDHCPVGAVLSVSSVP 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,783,678
Number of extensions: 1407029
Number of successful extensions: 4022
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4007
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,174,046
Effective search space: 4946742054
Effective search space used: 4946742054
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [C... 586 e-167
Alignment gi|XP_548620.2| PREDICTED: similar to apurinic/apyrimidinic end... 73 6e-13
Alignment gi|XP_853568.1| PREDICTED: similar to LINE-1 reverse transcript... 56 7e-08
Alignment gi|XP_854069.1| PREDICTED: similar to LINE-1 reverse transcript... 55 1e-07
Alignment gi|XP_850132.1| PREDICTED: similar to LINE-1 reverse transcript... 55 2e-07
Alignment gi|XP_848422.1| PREDICTED: similar to LINE-1 reverse transcript... 55 2e-07
Alignment gi|XP_856017.1| PREDICTED: similar to LINE-1 reverse transcript... 55 2e-07
Alignment gi|XP_855978.1| PREDICTED: similar to LINE-1 reverse transcript... 55 2e-07
Alignment gi|XP_537277.2| PREDICTED: similar to reverse transcriptase iso... 55 2e-07
Alignment gi|XP_536180.2| PREDICTED: similar to LINE-1 reverse transcript... 55 2e-07
>ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris].
Length = 318
Score = 586 bits (1510), Expect = e-167
Identities = 285/318 (89%), Positives = 288/318 (90%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKKAA AEDG+ +G LYEDPPDQKT+PSGKSA
Sbjct: 1 MPKRGKKAAAAEDGEQPGPEPEAKKSKTAAKKSEKEAAGEGPALYEDPPDQKTAPSGKSA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL GLPHQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLPHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFD FVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|XP_548620.2| PREDICTED: similar to apurinic/apyrimidinic endonuclease 2 [Canis
familiaris].
Length = 487
Score = 73.2 bits (178), Expect = 6e-13
Identities = 79/302 (26%), Positives = 126/302 (41%), Gaps = 41/302 (13%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGLDWVKEEAP------------DILCLQETK-------CSEN 426
L++ SWN++G+R+ ++ + A DI+CLQETK C ++
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSVATFCKDS 61
Query: 427 KLPAELQE-LSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAE 603
P +E LSGL + D Y + +++ L+ D EGR ++ +
Sbjct: 62 ATPMAAEEGLSGLLATH---NGDVGCYGNMDEFTQE-ELRAL--------DSEGRALLTQ 109
Query: 604 FD---------AFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASHKPLVLCGD 750
L+ Y P+A G RL ++ R+ + + L A+ +++ GD
Sbjct: 110 HKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGD 169
Query: 751 LNVAHEEID---------LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTA 903
LN AH ID G K G G ++ P DS+R P
Sbjct: 170 LNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQAGSHVR--PFIDSYRCFQPKQE 227
Query: 904 YAYTFWTYMMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL*P 1080
A+T W+ + AR N G RLDY L +L + DS + + +GSDHCP+ L++
Sbjct: 228 GAFTCWSAVSGARHLNYGSRLDYVLGDRTLVIDTFQDSFLLPEVMGSDHCPVGAVLSVSS 287
Query: 1081 FP 1086
P
Sbjct: 288 VP 289
>ref|XP_853568.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris].
Length = 1275
Score = 56.2 bits (134), Expect = 7e-08
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y R +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINRLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_854069.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris].
Length = 1275
Score = 55.5 bits (132), Expect = 1e-07
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L+ + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLEQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_850132.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris].
Length = 1275
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_848422.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog isoform
2 [Canis familiaris].
Length = 1275
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_856017.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog isoform
4 [Canis familiaris].
Length = 1252
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_855978.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog isoform
3 [Canis familiaris].
Length = 1240
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_537277.2| PREDICTED: similar to reverse transcriptase isoform 1 [Canis
familiaris].
Length = 1150
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 8 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 65
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 66 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 120
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 121 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 164
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 165 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 195
>ref|XP_536180.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris].
Length = 1274
Score = 54.7 bits (130), Expect = 2e-07
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
L I + NV+GL IK++ + DW+K++ P I CLQET + + ++ G Y S
Sbjct: 7 LSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYS--LKIKGWRTIYHS 64
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIV----AEFDAFVLVTAYVPNAG 648
K+ +GV +L K+ + D+EG I+ + + ++ Y PN G
Sbjct: 65 NGPQKK--AGVAILISD---KLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVG 119
Query: 649 RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 828
+Y + +K+L + L+L GD N+A +D + +K+N +E
Sbjct: 120 AA----KYINQLLTKVKKYL----DNNTLIL-GDFNLALSILD----RSSKQNIS---KE 163
Query: 829 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWT 924
+ + L + D +R L+PN+ YTF++
Sbjct: 164 TRALNDTLDQMDFTDIYRTLHPNST-EYTFFS 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,875,989
Number of extensions: 1428497
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4242
Number of HSP's successfully gapped: 16
Length of query: 455
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 349
Effective length of database: 15,340,888
Effective search space: 5353969912
Effective search space used: 5353969912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo... 581 e-166
Alignment gi|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo... 581 e-166
Alignment gi|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo... 581 e-166
Alignment gi|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 [Ho... 82 1e-15
>ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens].
Length = 318
Score = 581 bits (1497), Expect = e-166
Identities = 283/318 (88%), Positives = 286/318 (89%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKK AVAEDGD +G LYEDPPDQKTSPSGK A
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL GL HQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIG+EEHDQEGRVIVAEFD+FVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNT YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens].
Length = 318
Score = 581 bits (1497), Expect = e-166
Identities = 283/318 (88%), Positives = 286/318 (89%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKK AVAEDGD +G LYEDPPDQKTSPSGK A
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL GL HQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIG+EEHDQEGRVIVAEFD+FVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNT YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens].
Length = 318
Score = 581 bits (1497), Expect = e-166
Identities = 283/318 (88%), Positives = 286/318 (89%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKK AVAEDGD +G LYEDPPDQKTSPSGK A
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL GL HQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIG+EEHDQEGRVIVAEFD+FVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNT YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 [Homo sapiens].
Length = 518
Score = 82.0 bits (201), Expect = 1e-15
Identities = 85/330 (25%), Positives = 130/330 (39%), Gaps = 69/330 (20%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGLDWVKEEAP-----------------DILCLQETKCSENKL 432
L++ SWN++G+R + L V + P DI+CLQETK + + L
Sbjct: 2 LRVVSWNINGIR-----RPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDAL 56
Query: 433 PAELQELSGLPHQYWSAPSDKEGYSGVGLLSRQ--CPLKVSYGIG--------------- 561
L + G + Y+S ++ GYSGV + P+ G+
Sbjct: 57 TEPLAIVEGY-NSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGN 115
Query: 562 -----EEEH---DQEGRVIVAEFD---------AFVLVTAYVPNAGRGLV-RLEYRQRWD 687
+EE D EGR ++ + L+ Y P+A G RL ++ R+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 688 EAFRKFLKGL-ASHKPLVLCGDLNVAHEEID---------LRNPKGNK------KNAGFT 819
+ + L A+ +++ GDLN AH ID G K N G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 820 PQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-L 996
G P DS+R P A+T W+ + AR N G RLDY L +L +
Sbjct: 236 SASHVG--------PFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVI 287
Query: 997 PALCDSKIRSKALGSDHCPITLYLAL*PFP 1086
S + + +GSDHCP+ L++ P
Sbjct: 288 DTFQASFLLPEVMGSDHCPVGAVLSVSSVP 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,032,131
Number of extensions: 1416724
Number of successful extensions: 4166
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4152
Number of HSP's successfully gapped: 4
Length of query: 455
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,802,980
Effective search space: 5166240020
Effective search space used: 5166240020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus ... 576 e-164
Alignment gi|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mu... 87 2e-17
>ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus].
Length = 317
Score = 576 bits (1484), Expect = e-164
Identities = 283/318 (88%), Positives = 288/318 (90%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKKAA A+DG+ +G VLYEDPPDQKTSPSGKSA
Sbjct: 1 MPKRGKKAA-ADDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSPSGKSA 59
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL GL HQYWS
Sbjct: 60 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWS 119
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEF++FVLVTAYVPNAGRGLV
Sbjct: 120 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLV 179
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLK LAS KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 180 RLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 239
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 240 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 299
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 300 RSKALGSDHCPITLYLAL 317
>ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus].
Length = 516
Score = 87.4 bits (215), Expect = 2e-17
Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 60/311 (19%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIK--------------KKGLDWVKEEAPDILCLQETKCSENKLPAE 441
L++ SWN++G+R+ ++ ++ LD E DI+CLQETK + + L
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLD---ELDADIVCLQETKVTRDVLTEP 58
Query: 442 LQELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVS------------------YGIGEE 567
L + G + Y+S + GYSGV + V+ YG +E
Sbjct: 59 LAIVEGY-NSYFSFSRSRSGYSGVATFCKDSATPVAAEEGLSGVFATLNGDIGCYGNMDE 117
Query: 568 EHDQEGRVIVAEFDAFV----------------LVTAYVPNAGRGLV-RLEYRQRWDEAF 696
+E RV+ +E A + L+ Y P+A G RL ++ R+
Sbjct: 118 FTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLL 177
Query: 697 RKFLKGL-ASHKPLVLCGDLNVAHEEID---------LRNPKGNKKNAGFTPQERQGFGE 846
+ + L A+ +++ GDLN AH ID G K G G
Sbjct: 178 QMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDEAGP 237
Query: 847 LLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-LPALCDSKIR 1023
+ DS+R+L+P A+T W+ + AR N G RLDY L +L + S +
Sbjct: 238 HIGL--FMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTFQASFLL 295
Query: 1024 SKALGSDHCPI 1056
+ +GSDHCP+
Sbjct: 296 PEVMGSDHCPV 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,129,202
Number of extensions: 1201015
Number of successful extensions: 3264
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3255
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 350
Effective length of database: 12,463,779
Effective search space: 4362322650
Effective search space used: 4362322650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [S... 600 e-172
Alignment gi|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic sit... 92 9e-19
>ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa].
Length = 318
Score = 600 bits (1547), Expect = e-172
Identities = 293/318 (92%), Positives = 294/318 (92%)
Frame = +1
Query: 121 MPKRGKKAAVAEDGDXXXXXXXXXXXXXXXXXXXXXXXXDGAVLYEDPPDQKTSPSGKSA 300
MPKRGKKAAVAEDGD +GAVLYEDPPDQKTSPSGKSA
Sbjct: 1 MPKRGKKAAVAEDGDEPKSEPEAKKSKAGAKKTEKEAAGEGAVLYEDPPDQKTSPSGKSA 60
Query: 301 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 480
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWS 120
Query: 481 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 660
APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLV 180
Query: 661 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 840
RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 841 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 1020
GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1021 RSKALGSDHCPITLYLAL 1074
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa].
Length = 515
Score = 91.7 bits (226), Expect = 9e-19
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 58/319 (18%)
Frame = +1
Query: 304 LKICSWNVDGLRAWIKKKGLDW------------VKEEAPDILCLQETKCSENKLPAELQ 447
L++ SWN++G+R+ ++ G + + + DI+CLQETK + + L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 448 ELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVS------------------YGIGEE-- 567
+ G + Y+S ++ GYSGV + V+ YG +E
Sbjct: 62 IIEGY-NSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLATLNGDVNCYGNMDEFT 120
Query: 568 -----EHDQEGRVIVAEFD---------AFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRK 702
D EGR ++ + + ++ Y P+A G RL ++ R+ +
Sbjct: 121 QEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLTFKMRFYHLLQI 180
Query: 703 FLKGL-ASHKPLVLCGDLNVAHEEID---------LRNPKGNKKNAGFTPQERQGFGELL 852
+ L A+ +++ GDLN AH ID G K G R G +
Sbjct: 181 RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQAGSHM 240
Query: 853 QAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSK 1029
P DS+R+ P A+T W+ + AR N G R+DY L +L + S + +
Sbjct: 241 G--PFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALVMDTFQSSFVLPE 298
Query: 1030 ALGSDHCPITLYLAL*PFP 1086
+GSDHCP+ L + P P
Sbjct: 299 VMGSDHCPVGAVLNVSPVP 317
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,490,604
Number of extensions: 924164
Number of successful extensions: 2574
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,804,438
Effective search space: 3107966614
Effective search space used: 3107966614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002467
(1365 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1427 0.0
Sscrofa_Chr02 660 0.0
Sscrofa_Chr01 533 e-149
>Sscrofa_Chr07
|| Length = 134764511
Score = 1427 bits (720), Expect = 0.0
Identities = 720/720 (100%)
Strand = Plus / Minus
Query: 559 ggtgaggaggaacatgatcaggaaggccgagtgattgtggctgaatttgatgcatttgtg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480482 ggtgaggaggaacatgatcaggaaggccgagtgattgtggctgaatttgatgcatttgtg 83480423
Query: 619 ctggtgacagcctatgtacccaatgcaggccgaggtctggtacgcctggagtaccgccag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480422 ctggtgacagcctatgtacccaatgcaggccgaggtctggtacgcctggagtaccgccag 83480363
Query: 679 cgctgggatgaagcctttcgcaaattcctgaagggtctggcctcccacaagccccttgtg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480362 cgctgggatgaagcctttcgcaaattcctgaagggtctggcctcccacaagccccttgtg 83480303
Query: 739 ctctgtggggaccttaatgtggctcatgaagaaattgaccttcgcaacccaaagggaaac 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480302 ctctgtggggaccttaatgtggctcatgaagaaattgaccttcgcaacccaaagggaaac 83480243
Query: 799 aaaaagaatgctggcttcactccacaggaacgtcaaggctttggggaattgctgcaggct 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480242 aaaaagaatgctggcttcactccacaggaacgtcaaggctttggggaattgctgcaggct 83480183
Query: 859 gtgccactggctgacagtttccggcacctctaccccaacacggcgtatgcctacaccttt 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480182 gtgccactggctgacagtttccggcacctctaccccaacacggcgtatgcctacaccttt 83480123
Query: 919 tggacctacatgatgaatgcgcgatctaaaaatgttggatggcggcttgattattttttg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480122 tggacctacatgatgaatgcgcgatctaaaaatgttggatggcggcttgattattttttg 83480063
Query: 979 ttgtctcactctctgttgcctgcattgtgtgacagcaagatccgttccaaggctctgggt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480062 ttgtctcactctctgttgcctgcattgtgtgacagcaagatccgttccaaggctctgggt 83480003
Query: 1039 agtgaccactgtcccattactctatacctagcactgtgacctttccccaaatcagtttga 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480002 agtgaccactgtcccattactctatacctagcactgtgacctttccccaaatcagtttga 83479943
Query: 1099 gcctgggatataagccaatcaaactagctttaaacttcttacgcccaaacttctttaaaa 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83479942 gcctgggatataagccaatcaaactagctttaaacttcttacgcccaaacttctttaaaa 83479883
Query: 1159 actgctctctagagaaatctgcactgtattttccttctcaactgcagcttttaaccaggc 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83479882 actgctctctagagaaatctgcactgtattttccttctcaactgcagcttttaaccaggc 83479823
Query: 1219 ttctagtaacagatgtaggtttcctttaaacccaaggatttttgtgtgtgttgggatgtc 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83479822 ttctagtaacagatgtaggtttcctttaaacccaaggatttttgtgtgtgttgggatgtc 83479763
Score = 377 bits (190), Expect = e-101
Identities = 197/198 (99%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 367 tgggtaaaggaagaagccccagatatcctgtgcctccaagagaccaaatgttcagagaac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480817 tgggtaaaggaagaagccccagatatcctgtgcctccaagagaccaaatgttcagagaac 83480758
Query: 427 aaactgccagctgaacttcaagagctgtctggactaccccatcagtactggtcagctcct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83480757 aaactgccagctgaacttcaagagctgtctggactaccccatcagtactggtcagctcct 83480698
Query: 487 tctgacaaggaagggtacagtggtgtgggcctgctctcccgccagtgcccactcaaagtc 546
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 83480697 tctgacaaggaagggtacagtggtgtgggcctgctctcccgccagtg-ccactcaaagtc 83480639
Query: 547 tcctatggcattggtgag 564
||||||||||||||||||
Sbjct: 83480638 tcctatggcattggtgag 83480621
Score = 367 bits (185), Expect = 1e-98
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 178 gagccagaagccaagaagagtaaggcgggagcaaagaaaaccgaaaaagaggcagcaggt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83481450 gagccagaagccaagaagagtaaggcgggagcaaagaaaaccgaaaaagaggcagcaggt 83481391
Query: 238 gatggggcagtcctgtatgaggaccccccagatcagaaaacctcacccagtggcaaatca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83481390 gatggggcagtcctgtatgaggaccccccagatcagaaaacctcacccagtggcaaatca 83481331
Query: 298 gctacactcaaaatctgctcctggaatgtggatgggcttcgagcttggattaagaaaaaa 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83481330 gccacactcaaaatctgctcctggaatgtggatgggcttcgagcttggattaagaaaaaa 83481271
Query: 358 ggtttagat 366
|||||||||
Sbjct: 83481270 ggtttagat 83481262
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 51 aggcaacgcggtagaaacactgcttcggtgggcgacgtggaactgctacagaagggcgtt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83481777 aggcaacgcggtagaaacactgcttcggtgggcgacgtggaactgctacagaagggcgtt 83481718
Query: 111 tattacagtgatgccgaaacgtgggaaaaaagccgcggtggcagaagatggggatgagcc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83481717 tattacagtgatgccgaaacgtgggaaaaaagccgcggtggcagaagatggggatgagcc 83481658
Query: 171 caagtctg 178
||||||||
Sbjct: 83481657 caagtctg 83481650
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1301 ctactgatgagttcctttgaaatgcccatgtgaaaataaaaagccatagtttcagc 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83479739 ctactgatgagttcctttgaaatgcccatgtgaaaataaaaagccatagtttcagc 83479684
Score = 97.6 bits (49), Expect = 2e-17
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 1 gtgttcctttctttgtgctggggtgaggaggagcttgactagactcaagcagg 53
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83482135 gtgttccattctttgtgctggggtgaggaggagcttgactagactcaagcagg 83482083
>Sscrofa_Chr02
|| Length = 162569375
Score = 660 bits (333), Expect = 0.0
Identities = 629/723 (86%), Gaps = 16/723 (2%)
Strand = Plus / Minus
Query: 60 ggtagaaacactgcttcggtgggcgacgtggaactgctacagaagggcgtttattacagt 119
|||| ||| |||||||||||||| ||| | || ||| | ||||||||| || ||||||||
Sbjct: 83945183 ggtaaaaatactgcttcggtgggagacattgagctggtgcagaagggcattcattacagt 83945124
Query: 120 gatgccgaaacgtgggaaaaaagccgcggtggcagaagatggggatgagcccaagtctga 179
||||| |||| || ||||| || || ||||||||||||||| ||||||||||||||||
Sbjct: 83945123 gatgcgaaaacatgacaaaaaggcagcagtggcagaagatggg-atgagcccaagtctga 83945065
Query: 180 gccagaagccaagaagagt-aaggcgggagcaaagaaaaccgaaaaagaggcagcaggtg 238
||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||| |
Sbjct: 83945064 gccagaagctaagaagagttaagatgggagcaaaacaaa-----aaagaggcagcaggag 83945010
Query: 239 atggggcagtcctgtatgagga-ccccccagatcagaaaacctcacccagtggcaaatca 297
| ||||||| |||||||||||| ||||||||| |||||||||| || || |||||
Sbjct: 83945009 agggggcagccctgtatgaggagccccccagaccagaaaaccttactca------aatca 83944956
Query: 298 gctacactcaaaatctgctcctggaatgtggatgggcttcgagcttggattaagaaaaaa 357
|| ||||| || ||||||||||| ||||||||||| ||| |||| ||||||||||| |||
Sbjct: 83944955 gccacacttaagatctgctcctgaaatgtggatggactttgagcctggattaagaagaaa 83944896
Query: 358 ggtttagattgggtaaaggaagaagccccagatatcctgtgcctccaagagaccaaatgt 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 83944895 ggtttagattgggtaaagaaagaagccccagatatcctgtgcctccaagagactaaatgt 83944836
Query: 418 tcagagaacaaactgccagctgaacttcaagagctgtctggactaccccatcagtactgg 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 83944835 tcagagaacaaactgccagctaaacttcaagagctgtctggactaccccatcagtatggg 83944776
Query: 478 tcagctccttctgacaaggaagggtacagtggtgtgggcctgctctcccgccagtgccca 537
| ||||||| ||||||||||||||||||||||||| |||| | || |||| |||||
Sbjct: 83944775 ctaactccttcagacaaggaagggtacagtggtgtggacctgtac--ccaccagggccca 83944718
Query: 538 ctcaaagtctcctatggcattggtgaggaggaacatgatcaggaaggccgagtgattgtg 597
|||||||||||||||| ||| |||||||||||||| |||||||| || | |||| ||||
Sbjct: 83944717 ctcaaagtctcctatgatattagtgaggaggaacataatcaggaaagctgggtgaatgtg 83944658
Query: 598 gctgaatttgatgcatttgtgctggtgacagcctatgtacccaatgcaggccgaggtctg 657
|||||||| ||||||||||||||| |||||||||| || | |||||||||| |||||||
Sbjct: 83944657 gctgaattggatgcatttgtgctgctgacagcctacatagctaatgcaggccaaggtctg 83944598
Query: 658 gtacgcctggagtaccgccagcgctgggatgaagcctttcgcaaattcctgaagggtctg 717
| |||| |||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 83944597 atgtgcctagagtacgggcagcgctgggatgaagcctttcacaaattcctgaagggtctg 83944538
Query: 718 gcctcccacaagccccttgtgctctgtggggaccttaatgtggctcatgaagaaattgac 777
|||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 83944537 gcctcccataagcctcttgggctatgtggggacctcaatgtggctcatgaagaaattgac 83944478
Query: 778 ctt 780
|||
Sbjct: 83944477 ctt 83944475
Score = 315 bits (159), Expect = 4e-83
Identities = 261/292 (89%), Gaps = 6/292 (2%)
Strand = Plus / Minus
Query: 982 tctcactctctgttgcctgcattgtgtgacagcaagatccgttccaaggctctgggtagt 1041
||||||||||| |||||||| |||||||||| |||||| ||||||||||||| |||
Sbjct: 83944013 tctcactctctcttgcctgcgttgtgtgaca---agatcca--ccaaggctctgggcagt 83943959
Query: 1042 gaccactgtcccattactctatacctagcactgtgacctttccccaaatcagtttgagcc 1101
||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 83943958 gactactgtcccattaccctatacctagcactgtgaccctcccccaaatcagtttgagcc 83943899
Query: 1102 tgggatataagccaatcaaactagctttaaacttcttacgcccaaa-cttctttaaaaac 1160
||||| ||||||| ||||||||||||||||| |||||| || ||| |||||||||||||
Sbjct: 83943898 tgggaaataagcccatcaaactagctttaaatgtcttaccccaaaaacttctttaaaaac 83943839
Query: 1161 tgctctctagagaaatctgcactgtattttccttctcaactgcagcttttaaccaggctt 1220
|| |||||||||||||||||| |||||||||||||| ||||| | ||||| ||||| |||
Sbjct: 83943838 tgttctctagagaaatctgcattgtattttccttctaaactgaatcttttcaccagactt 83943779
Query: 1221 ctagtaacagatgtaggtttcctttaaacccaaggatttttgtgtgtgttgg 1272
||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 83943778 ctagtaacagacttagatttcctttaagcccaaggatttttgtgtgtgttgg 83943727
Score = 153 bits (77), Expect = 3e-34
Identities = 115/126 (91%), Gaps = 5/126 (3%)
Strand = Plus / Minus
Query: 767 aagaaattgaccttcgcaacccaaagggaaacaaaaagaatgctggcttcactccacagg 826
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 83944202 aagaaattgaccttcacaacccaaagggaaacaaaaagaatgctgatttcactccatagg 83944143
Query: 827 aacgtcaaggctttggggaattgctgcaggc----tgtgccactggctgacagtttccgg 882
| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 83944142 agcgtcaaggctct-gggaattgctgcaggctgtgtgtgccactggctgacagtttccgg 83944084
Query: 883 cacctc 888
||||||
Sbjct: 83944083 cacctc 83944078
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1301 ctactgatgagttcctttgaaatgcccatgtgaaaataaaaagccatagtttca 1354
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 83943689 ctactgatgatttcctttgaaatgcccatgtgaaaataaagagccatagtttca 83943636
>Sscrofa_Chr01
|| Length = 315321322
Score = 533 bits (269), Expect = e-149
Identities = 349/375 (93%), Gaps = 3/375 (0%)
Strand = Plus / Minus
Query: 904 tatgcctacaccttttggacctacatgatgaatgcgcgatctaaaaatgttggatggcgg 963
|||| ||||||||||||||||||||||||||||| |||||||||| || |||| |||| |
Sbjct: 141153330 tatgactacaccttttggacctacatgatgaatgtgcgatctaaagatattggttggcag 141153271
Query: 964 cttgattattttttgttgtctcactctctgttgcctgcattgtgtgacagcaagatccgt 1023
|||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
Sbjct: 141153270 cttgattattttttat---ctcactctctgttgcctgcattgtatgacagcaagatccat 141153214
Query: 1024 tccaaggctctgggtagtgaccactgtcccattactctatacctagcactgtgacctttc 1083
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141153213 ttcaaggctctgggtagtgaccactgtcccattactctatacctagcactgtgacctttc 141153154
Query: 1084 cccaaatcagtttgagcctgggatataagccaatcaaactagctttaaacttcttacgcc 1143
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 141153153 cccagttcagtttgagcctgggatataagccaatcaaactagctttaaacttcttacccc 141153094
Query: 1144 caaacttctttaaaaactgctctctagagaaatctgcactgtattttccttctcaactgc 1203
||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct: 141153093 taaacttccttaaaaactgctctctagagaaatatgcactgtattttccttcttagctgc 141153034
Query: 1204 agcttttaaccaggcttctagtaacagatgtaggtttcctttaaacccaaggatttttgt 1263
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 141153033 atcttttaaccaggcttctagtaacagacttaggtttcctttaagcccaaggatttttgt 141152974
Query: 1264 gtgtgttgggatgtc 1278
||||||||||||||
Sbjct: 141152973 atgtgttgggatgtc 141152959
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,778,324
Number of extensions: 346
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 13
Length of query: 1365
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1344
Effective length of database: 2,808,413,156
Effective search space: 3774507281664
Effective search space used: 3774507281664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)