Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073787.2| xaa-Pro dipeptidase [Bos taurus]. 962 0.0
Alignment gi|NP_001179123.1| probable Xaa-Pro aminopeptidase 3 [Bos tauru... 151 2e-36
Alignment gi|XP_002687987.1| PREDICTED: X-prolyl aminopeptidase (aminopep... 151 2e-36
>ref|NP_001073787.2| xaa-Pro dipeptidase [Bos taurus].
Length = 493
Score = 962 bits (2488), Expect = 0.0
Identities = 460/493 (93%), Positives = 480/493 (97%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKN AVQAGS VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNTAVQAGSAVVLQGGEETQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
TGVLFRQESFFHWAFGVTEPGCYGVI++D+GTSTLFVPRLPPSHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVINVDTGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDV Y DEIASVLTSRSPSVLLTLRGVNTDSGS+CREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSRSPSVLLTLRGVNTDSGSICREASFEGISKFNVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCICGSGENSAVLHYGHAGAPND+TIQDGDMC+FDMGGEYYCFASDITCSFPANGKFT
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDKTIQDGDMCVFDMGGEYYCFASDITCSFPANGKFTP 300
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKAIYEAVLRSCRAVM++MKPGVWWPDMHRLADR+HLEELTRIG+LTGSVDAMVQVHLG
Sbjct: 301 DQKAIYEAVLRSCRAVMSAMKPGVWWPDMHRLADRIHLEELTRIGLLTGSVDAMVQVHLG 360
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDH 1288
AVFMPHGLGH LG+DVHDVGGYPEGV+RIDEPGL+ LRTARHL+ MVLTVEPGIYFIDH
Sbjct: 361 AVFMPHGLGHLLGLDVHDVGGYPEGVDRIDEPGLQRLRTARHLEPRMVLTVEPGIYFIDH 420
Query: 1289 LLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMA 1468
LLDEALADPAR+CFFN EVLQRFR FGGVRIEEDVVVT++GMELLTCVPRTVEE+EACMA
Sbjct: 421 LLDEALADPARSCFFNREVLQRFRAFGGVRIEEDVVVTDTGMELLTCVPRTVEEVEACMA 480
Query: 1469 GRDKAFVPFSGPK 1507
G+DKAF PFSGPK
Sbjct: 481 GQDKAFAPFSGPK 493
>ref|NP_001179123.1| probable Xaa-Pro aminopeptidase 3 [Bos taurus].
Length = 507
Score = 151 bits (382), Expect = 2e-36
Identities = 136/473 (28%), Positives = 212/473 (44%), Gaps = 19/473 (4%)
Frame = +2
Query: 95 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 265
+ L R +L + K Q+G+ VV+L T D +F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKEAQEQSGTDHTVVLLSN--PTYYMSNDIPYIFHQDNNFLYLCGFQE 129
Query: 266 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 427
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 428 SVLTSRSPSVLLTL---------RGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECR 580
L + + TL + ++ D E +K ++ R
Sbjct: 190 H-LVPKLKAETHTLWYDWMRPAHKQLHCDYMQQLAEVKARSKNKVRAVQQLVQ----RLR 244
Query: 581 VFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCI 760
+ K+ E+E ++ K++S+A E M A K ++E + + FE C +RG +Y +
Sbjct: 245 LIKSPAEIERMQVAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPV 303
Query: 761 CGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKA 940
G S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+FT Q
Sbjct: 304 VAGGNRSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAE 359
Query: 941 IYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFM 1120
+YEAVL R + PG +++ + + ++L +GI T ++ +
Sbjct: 360 LYEAVLEVQRDCLTLCCPGTSLENVYSMMLTLISQKLKELGI-TRNIKEKNPFKAARKYC 418
Query: 1121 PHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDE 1300
PH +GH+LG+DVHD P RSL LQ GMV+TVEPGIY + D
Sbjct: 419 PHHVGHYLGMDVHDTPDMP-----------RSL----PLQPGMVITVEPGIYIPEDDQDA 463
Query: 1301 ALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTC-VPRTVEEIE 1456
+RFRG GVRIE+DVVVT + +L+ P+ +++IE
Sbjct: 464 P---------------ERFRGL-GVRIEDDVVVTEASPLVLSADCPKEMKDIE 500
>ref|XP_002687987.1| PREDICTED: X-prolyl aminopeptidase (aminopeptidase P) 3, putative
[Bos taurus].
Length = 507
Score = 151 bits (382), Expect = 2e-36
Identities = 136/473 (28%), Positives = 212/473 (44%), Gaps = 19/473 (4%)
Frame = +2
Query: 95 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 265
+ L R +L + K Q+G+ VV+L T D +F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKEAQEQSGTDHTVVLLSN--PTYYMSNDIPYIFHQDNNFLYLCGFQE 129
Query: 266 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 427
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 428 SVLTSRSPSVLLTL---------RGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECR 580
L + + TL + ++ D E +K ++ R
Sbjct: 190 H-LVPKLKAETHTLWYDWMRPAHKQLHCDYMQQLAEVKARSKNKVRAVQQLVQ----RLR 244
Query: 581 VFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCI 760
+ K+ E+E ++ K++S+A E M A K ++E + + FE C +RG +Y +
Sbjct: 245 LIKSPAEIERMQVAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPV 303
Query: 761 CGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKA 940
G S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+FT Q
Sbjct: 304 VAGGNRSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAE 359
Query: 941 IYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFM 1120
+YEAVL R + PG +++ + + ++L +GI T ++ +
Sbjct: 360 LYEAVLEVQRDCLTLCCPGTSLENVYSMMLTLISQKLKELGI-TRNIKEKNPFKAARKYC 418
Query: 1121 PHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDE 1300
PH +GH+LG+DVHD P RSL LQ GMV+TVEPGIY + D
Sbjct: 419 PHHVGHYLGMDVHDTPDMP-----------RSL----PLQPGMVITVEPGIYIPEDDQDA 463
Query: 1301 ALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTC-VPRTVEEIE 1456
+RFRG GVRIE+DVVVT + +L+ P+ +++IE
Sbjct: 464 P---------------ERFRGL-GVRIEDDVVVTEASPLVLSADCPKEMKDIE 500
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,178,419
Number of extensions: 1582556
Number of successful extensions: 5926
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5907
Number of HSP's successfully gapped: 3
Length of query: 593
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 485
Effective length of database: 14,107,870
Effective search space: 6842316950
Effective search space used: 6842316950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533702.2| PREDICTED: similar to Xaa-Pro dipeptidase (X-Pr... 957 0.0
Alignment gi|XP_538358.2| PREDICTED: similar to CG9581-PA [Canis familiar... 152 1e-36
>ref|XP_533702.2| PREDICTED: similar to Xaa-Pro dipeptidase (X-Pro dipeptidase)
(Proline dipeptidase) (Prolidase) (Imidodipeptidase)
[Canis familiaris].
Length = 493
Score = 957 bits (2474), Expect = 0.0
Identities = 460/493 (93%), Positives = 479/493 (97%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGSVV+LQGGE+TQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFGLNRQRLCERLRKNPAVQAGSVVLLQGGEDTQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
TGVLFRQESFFHWAFGVT+PGCYG I++ +GTSTLFVPRLP S+ATWMGKIHSKE+FKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTDPGCYGTINVGTGTSTLFVPRLPASYATWMGKIHSKEYFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDV Y DEIASVLTS+SPSVLLTLRGVNTDSGSVCREASFEGIS+FNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSQSPSVLLTLRGVNTDSGSVCREASFEGISRFNVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VECRVFKTDMELEVLRYTN+ISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNRISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCF+SDITCSFPANGKFT
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFSSDITCSFPANGKFTA 300
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKAIYEAVLRSCRAVM++MKPGVWWPDMHRLADRVHLEEL RIGIL GS+DAMVQ HLG
Sbjct: 301 DQKAIYEAVLRSCRAVMSAMKPGVWWPDMHRLADRVHLEELVRIGILNGSIDAMVQAHLG 360
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDH 1288
AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHL+ MVLTVEPG+YFIDH
Sbjct: 361 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLEPRMVLTVEPGLYFIDH 420
Query: 1289 LLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMA 1468
LLDEALADPARACFFN EVLQRFRGFGGVRIEEDVVVT+SGMELLTCVPRTVEEIEACMA
Sbjct: 421 LLDEALADPARACFFNREVLQRFRGFGGVRIEEDVVVTDSGMELLTCVPRTVEEIEACMA 480
Query: 1469 GRDKAFVPFSGPK 1507
GRDKAF PFSGPK
Sbjct: 481 GRDKAFTPFSGPK 493
>ref|XP_538358.2| PREDICTED: similar to CG9581-PA [Canis familiaris].
Length = 507
Score = 152 bits (384), Expect = 1e-36
Identities = 133/468 (28%), Positives = 208/468 (44%), Gaps = 14/468 (2%)
Frame = +2
Query: 95 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 265
+ L R +L + K Q+G+ VV+L T D F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKETQDQSGTDQTVVLLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 266 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 427
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 428 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 595
++ + +R + S + E ++ + I R+ K+
Sbjct: 190 HLVPKLKDETNMVWYDWMRPSHAQLHSDYMQQLTEVKARSKNKVRAVQQLIQRLRLIKSP 249
Query: 596 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 775
E+E ++ K++S+A E M A K ++E + + FE C +RG +Y + G
Sbjct: 250 AEIERMQIAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 776 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAV 955
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+FT Q +YEAV
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAELYEAV 364
Query: 956 LRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLG 1135
L R + PG +++ L + ++L +GI+ ++ + PH +G
Sbjct: 365 LEIQRDCLTLCSPGTSLENIYSLMLTLIAQKLKELGIVK-NIKGNNAFKAARKYCPHHVG 423
Query: 1136 HFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADP 1315
H+LG+DVHD P RSL LQ GMV+TVEPGIY + D
Sbjct: 424 HYLGMDVHDTPDMP-----------RSL----PLQPGMVITVEPGIYIPEDDRDAP---- 464
Query: 1316 ARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTC-VPRTVEEIE 1456
++FRG GVRIE+DVVVT +L+ P+ + +IE
Sbjct: 465 -----------EKFRGL-GVRIEDDVVVTQDSPLILSADCPKEMNDIE 500
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,796,063
Number of extensions: 1628850
Number of successful extensions: 6373
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6358
Number of HSP's successfully gapped: 2
Length of query: 593
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 485
Effective length of database: 15,274,216
Effective search space: 7407994760
Effective search space used: 7407994760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000276.2| xaa-Pro dipeptidase isoform 1 [Homo sapiens]. 952 0.0
Alignment gi|NP_001159528.1| xaa-Pro dipeptidase isoform 2 [Homo sapiens]. 855 0.0
Alignment gi|NP_001159529.1| xaa-Pro dipeptidase isoform 3 [Homo sapiens]. 697 0.0
Alignment gi|NP_071381.1| probable Xaa-Pro aminopeptidase 3 isoform 1 [Ho... 151 2e-36
>ref|NP_000276.2| xaa-Pro dipeptidase isoform 1 [Homo sapiens].
Length = 493
Score = 952 bits (2461), Expect = 0.0
Identities = 459/493 (93%), Positives = 474/493 (96%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
TGVLFRQESFFHWAFGVTEPGCYGVID+D+G STLFVPRLP SHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDV Y DEIASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHPEI
Sbjct: 121 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYE+ESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSS 240
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKFT
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTA 300
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKA+YEAVLRS RAVM +MKPGVWWPDMHRLADR+HLEEL +GIL+GSVDAMVQ HLG
Sbjct: 301 DQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLG 360
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDH 1288
AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQ GMVLTVEPGIYFIDH
Sbjct: 361 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDH 420
Query: 1289 LLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMA 1468
LLDEALADPARA F N EVLQRFRGFGGVRIEEDVVVT+SG+ELLTCVPRTVEEIEACMA
Sbjct: 421 LLDEALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMA 480
Query: 1469 GRDKAFVPFSGPK 1507
G DKAF PFSGPK
Sbjct: 481 GCDKAFTPFSGPK 493
>ref|NP_001159528.1| xaa-Pro dipeptidase isoform 2 [Homo sapiens].
Length = 452
Score = 855 bits (2209), Expect = 0.0
Identities = 419/493 (84%), Positives = 433/493 (87%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
TGVLFRQESFFHWAFGVTEPGCYGVID+D+G STLFVPRLP SHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDV Y DEIASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHPEI
Sbjct: 121 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VEC LFEHYCYSRGGMRHSS
Sbjct: 181 VEC-----------------------------------------LFEHYCYSRGGMRHSS 199
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKFT
Sbjct: 200 YTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTA 259
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKA+YEAVLRS RAVM +MKPGVWWPDMHRLADR+HLEEL +GIL+GSVDAMVQ HLG
Sbjct: 260 DQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLG 319
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDH 1288
AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQ GMVLTVEPGIYFIDH
Sbjct: 320 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDH 379
Query: 1289 LLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMA 1468
LLDEALADPARA F N EVLQRFRGFGGVRIEEDVVVT+SG+ELLTCVPRTVEEIEACMA
Sbjct: 380 LLDEALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMA 439
Query: 1469 GRDKAFVPFSGPK 1507
G DKAF PFSGPK
Sbjct: 440 GCDKAFTPFSGPK 452
>ref|NP_001159529.1| xaa-Pro dipeptidase isoform 3 [Homo sapiens].
Length = 429
Score = 697 bits (1800), Expect = 0.0
Identities = 339/375 (90%), Positives = 353/375 (94%)
Frame = +2
Query: 383 EKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHP 562
++Y D +IASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHP
Sbjct: 55 QRYCTDTGVLFRQIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHP 114
Query: 563 EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRH 742
EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYE+ESLFEHYCYSRGGMRH
Sbjct: 115 EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRH 174
Query: 743 SSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKF 922
SSYTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKF
Sbjct: 175 SSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKF 234
Query: 923 TEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVH 1102
T DQKA+YEAVLRS RAVM +MKPGVWWPDMHRLADR+HLEEL +GIL+GSVDAMVQ H
Sbjct: 235 TADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAH 294
Query: 1103 LGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFI 1282
LGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQ GMVLTVEPGIYFI
Sbjct: 295 LGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFI 354
Query: 1283 DHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEAC 1462
DHLLDEALADPARA F N EVLQRFRGFGGVRIEEDVVVT+SG+ELLTCVPRTVEEIEAC
Sbjct: 355 DHLLDEALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEAC 414
Query: 1463 MAGRDKAFVPFSGPK 1507
MAG DKAF PFSGPK
Sbjct: 415 MAGCDKAFTPFSGPK 429
Score = 134 bits (337), Expect = 3e-31
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 209 TGVLFRQ 229
TGVLFRQ
Sbjct: 61 TGVLFRQ 67
>ref|NP_071381.1| probable Xaa-Pro aminopeptidase 3 isoform 1 [Homo sapiens].
Length = 507
Score = 151 bits (382), Expect = 2e-36
Identities = 134/468 (28%), Positives = 208/468 (44%), Gaps = 14/468 (2%)
Frame = +2
Query: 95 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 265
+ L R +L ++K Q+G+ VVVL T D F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIQKEAQGQSGTDQTVVVLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 266 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 427
P V+ + S + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 428 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 595
+L + +R + S + E +K + I R+ K+
Sbjct: 190 HLLPKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRGVQQLIQRLRLIKSP 249
Query: 596 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 775
E+E ++ K++S+A E M K ++E + + FE C +RG +Y + G
Sbjct: 250 AEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 776 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAV 955
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+FT Q +YEAV
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAELYEAV 364
Query: 956 LRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLG 1135
L R + PG +++ + + ++L +GI+ ++ + PH +G
Sbjct: 365 LEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIMK-NIKENNAFKAARKYCPHHVG 423
Query: 1136 HFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADP 1315
H+LG+DVHD P RSL LQ GMV+T+EPGIY + D
Sbjct: 424 HYLGMDVHDTPDMP-----------RSL----PLQPGMVITIEPGIYIPEDDKDAP---- 464
Query: 1316 ARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTC-VPRTVEEIE 1456
++FRG GVRIE+DVVVT +L+ P+ + +IE
Sbjct: 465 -----------EKFRGL-GVRIEDDVVVTQDSPLILSADCPKEMNDIE 500
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,466,235
Number of extensions: 1592529
Number of successful extensions: 6109
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6091
Number of HSP's successfully gapped: 6
Length of query: 593
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 485
Effective length of database: 14,737,052
Effective search space: 7147470220
Effective search space used: 7147470220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032846.2| xaa-Pro dipeptidase [Mus musculus]. 918 0.0
Alignment gi|NP_796284.1| probable Xaa-Pro aminopeptidase 3 [Mus musculus]. 84 4e-16
>ref|NP_032846.2| xaa-Pro dipeptidase [Mus musculus].
Length = 493
Score = 918 bits (2373), Expect = 0.0
Identities = 442/493 (89%), Positives = 468/493 (94%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MA+ PSF LGNETLKVPLALF LNR+RLCERLRKN AVQA S VVLQGGEE QRYCTD
Sbjct: 1 MASTVRPSFSLGNETLKVPLALFALNRQRLCERLRKNGAVQAASAVVLQGGEEMQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
T ++FRQESFFHWAFGV E GCYGVID+D+G STLFVPRLP S+ATWMGKIHSKE+FKEK
Sbjct: 61 TSIIFRQESFFHWAFGVVESGCYGVIDVDTGKSTLFVPRLPDSYATWMGKIHSKEYFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDV Y DEIASVLTSR+PSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSRNPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VECRVFKTDMELEVLRYTN+ISSEAHREVMKAVKVGMKEYEMESLF+HYCYSRGGMRH+S
Sbjct: 181 VECRVFKTDMELEVLRYTNRISSEAHREVMKAVKVGMKEYEMESLFQHYCYSRGGMRHTS 240
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCIC SGEN+AVLHYGHAGAPNDRTI+DGD+CLFDMGGEYYCFASDITCSFPANGKFTE
Sbjct: 241 YTCICCSGENAAVLHYGHAGAPNDRTIKDGDICLFDMGGEYYCFASDITCSFPANGKFTE 300
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKAIYEAVLRSCR VM++MKPGVWWPDMHRLADR+HLEEL RIG+L+GSVDAM+QVHLG
Sbjct: 301 DQKAIYEAVLRSCRTVMSTMKPGVWWPDMHRLADRIHLEELARIGLLSGSVDAMLQVHLG 360
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDH 1288
AVFMPHGLGHFLG+DVHDVGGYPEGVERIDEPGLRSLRTARHL+ GMVLTVEPGIYFIDH
Sbjct: 361 AVFMPHGLGHFLGLDVHDVGGYPEGVERIDEPGLRSLRTARHLEPGMVLTVEPGIYFIDH 420
Query: 1289 LLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMA 1468
LLD+ALADPA+ACFFN EVLQRFR FGGVRIEEDVVVT+SGMELLTCVPRTVEEIEACMA
Sbjct: 421 LLDQALADPAQACFFNQEVLQRFRNFGGVRIEEDVVVTDSGMELLTCVPRTVEEIEACMA 480
Query: 1469 GRDKAFVPFSGPK 1507
G DKA VPFSG K
Sbjct: 481 GCDKASVPFSGQK 493
>ref|NP_796284.1| probable Xaa-Pro aminopeptidase 3 [Mus musculus].
Length = 386
Score = 84.0 bits (206), Expect = 4e-16
Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 13/300 (4%)
Frame = +2
Query: 95 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 265
+ L R +L + K +G+ VVVL T D F Q++ F + G E
Sbjct: 72 YALRRHKLMALVHKEAQGHSGTDHTVVVLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 266 PGCYGVIDIDSGT------STLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 427
P V+ SG + LFVPR P W G + VD+ + +E
Sbjct: 130 PDSILVLQSFSGKQLPSHKAMLFVPRRDPGRELWDGPRSGTDGAIALTGVDEAYPLEEFQ 189
Query: 428 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 595
+L + ++ + S + E ++ + I R+ K+
Sbjct: 190 HLLPKLRAETNMVWYDWMKPSHAQLHSDYMQPLTEAKARSKNKVRSVQQLIQRLRLVKSP 249
Query: 596 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 775
E++ ++ K++SEA E M A K + E + + FE C +RG +Y + G
Sbjct: 250 SEIKRMQIAGKLTSEAFIETMFASKAPIDEAFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 776 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAV 955
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+ E+ I A+
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRLLENTALIMLAI 364
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,796,204
Number of extensions: 1329267
Number of successful extensions: 4881
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4870
Number of HSP's successfully gapped: 2
Length of query: 593
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 486
Effective length of database: 12,403,707
Effective search space: 6028201602
Effective search space used: 6028201602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127070.2| PREDICTED: xaa-Pro dipeptidase [Sus scrofa]. 1009 0.0
>ref|XP_003127070.2| PREDICTED: xaa-Pro dipeptidase [Sus scrofa].
Length = 494
Score = 1009 bits (2609), Expect = 0.0
Identities = 492/494 (99%), Positives = 492/494 (99%), Gaps = 1/494 (0%)
Frame = +2
Query: 29 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 208
MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 60
Query: 209 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 388
TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 120
Query: 389 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 568
YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 180
Query: 569 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 748
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 749 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 928
YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 300
Query: 929 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLG 1108
DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMV VHLG
Sbjct: 301 DQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVPVHLG 360
Query: 1109 AVFMPHGLGHFLGIDVHDVGGYPE-GVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFID 1285
AVFMPHGLGHFLGIDVHDVGGYPE GVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFID
Sbjct: 361 AVFMPHGLGHFLGIDVHDVGGYPESGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFID 420
Query: 1286 HLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACM 1465
HLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACM
Sbjct: 421 HLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACM 480
Query: 1466 AGRDKAFVPFSGPK 1507
AGRDKAFVPFSGPK
Sbjct: 481 AGRDKAFVPFSGPK 494
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,442,983
Number of extensions: 1018568
Number of successful extensions: 3957
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3943
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 488
Effective length of database: 8,729,747
Effective search space: 4260116536
Effective search space used: 4260116536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002468
(1780 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 617 e-174
>Sscrofa_Chr06
|| Length = 157765593
Score = 617 bits (311), Expect = e-174
Identities = 381/396 (96%), Gaps = 7/396 (1%)
Strand = Plus / Minus
Query: 1372 ggtccggatcgaggaggacgtcgtggtgaccaacagtggcatggagctgctgacctgtgt 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38724652 ggtccggatcgaggaggacgtcgtggtgaccaacagtggcatggagctgctgacctgtgt 38724593
Query: 1432 gccccgcacagtggaggagattgaagcttgcatggcaggccgcgacaaagcttttgttcc 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38724592 gccccgcacagtggaggagattgaagcttgcatggcaggccgcgacaaagcttttgttcc 38724533
Query: 1492 cttctctggaccaaagtagagccgcagcctcacaagctgacatcacggagggcc-gggga 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 38724532 cttctctggaccaaagtagagccgcagcctcacaagctgacatcacggagggcctgggga 38724473
Query: 1551 ttggccctcc-agcaagcaggggtccggtgctccaccatcacangcgacattggcacttg 1609
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 38724472 ttggccctccaagcaagcaggggtccggtgctccaccatcacaggcgacattggcacttg 38724413
Query: 1610 agcaccccattcagtgctgtttcctagggagaaacttttttatttactc-tctgtgggga 1668
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 38724412 agcaccccattcagtgctgtttcctagggagaaac-tttttaattactcttctgtgggga 38724354
Query: 1669 tcacaccctttactactttgcttaaatgacagtggctttttaatgctanttttc-attat 1727
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct: 38724353 tcacaccctttactactttgcttaaatgacagtggcttttaaatgctaattttcaattat 38724294
Query: 1728 cctanttatttc-ataaat-ctggtctttaccagca 1761
|||| | |||| |||||| ||| ||||||||||||
Sbjct: 38724293 cctattattttcaataaatcctgttctttaccagca 38724258
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 1179 agggtgtggagcgcatcgacgagcccggcttgcggagcctgcgcactgctcggcacctgc 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38725191 agggtgtggagcgcatcgacgagcccggcttgcggagcctgcgcactgctcggcacctgc 38725132
Query: 1239 aggcgggcatggtgctcacggtggagccgggcatctacttcatcgaccacctcctggatg 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38725131 aggcgggcatggtgctcacggtggagccgggcatctacttcatcgaccacctcctggatg 38725072
Query: 1299 aggccctggcagacccggcccgcgcctgcttcttcaactgcgaggtcctgcagcgcttcc 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38725071 aggccctggcagacccggcccgcgcctgcttcttcaactgcgaggtcctgcagcgcttcc 38725012
Query: 1359 gtggttttggtggggt 1374
||||||||||||||||
Sbjct: 38725011 gtggttttggtggggt 38724996
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 45 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791116 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 38791175
Query: 105 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791176 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 38791235
Query: 165 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791236 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 38791295
Query: 225 gccagg 230
||||||
Sbjct: 38791296 gccagg 38791301
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 45 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854154 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 38854213
Query: 105 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854214 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 38854273
Query: 165 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854274 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 38854333
Query: 225 gccagg 230
||||||
Sbjct: 38854334 gccagg 38854339
Score = 357 bits (180), Expect = 1e-95
Identities = 186/188 (98%)
Strand = Plus / Minus
Query: 993 caggcgtctggtggcctgacatgcaccgcctggccgaccgcgtccacctggaagagctga 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38728350 caggcgtctggtggcctgacatgcaccgcctggccgaccgcgtccacctggaagagctga 38728291
Query: 1053 cccgcatcggcatcctgaccggcagcgtggacgccatggtccaggtccacctgggagctg 1112
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 38728290 cccgcatcggcatcctgaccggcagcgtggacgccatggtcccagtccacctgggagctg 38728231
Query: 1113 tgtttatgcctcacgggctcggccacttcctgggcatcgatgtgcacgacgtgggcggct 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38728230 tgtttatgcctcacgggctcggccacttcctgggcatcgatgtgcacgacgtgggcggct 38728171
Query: 1173 accctgag 1180
||||||||
Sbjct: 38728170 accctgag 38728163
Score = 299 bits (151), Expect = 3e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 846 gcctgttcgacatgggcggtgagtactactgcttcgcctcggatatcacgtgctcctttc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38736433 gcctgttcgacatgggcggtgagtactactgcttcgcctcggatatcacgtgctcctttc 38736374
Query: 906 ccgccaacggcaagttcaccgaggaccagaaggccatctacgaggcggtgctgcggagct 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38736373 ccgccaacggcaagttcaccgaggaccagaaggccatctacgaggcggtgctgcggagct 38736314
Query: 966 gccgggccgtcatgaactccatgaagccagg 996
|||||||||||||||||||||||||||||||
Sbjct: 38736313 gccgggccgtcatgaactccatgaagccagg 38736283
Score = 262 bits (132), Expect = 6e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 227 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38793128 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 38793187
Query: 287 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38793188 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 38793247
Query: 347 tggatgggaaag 358
||||||||||||
Sbjct: 38793248 tggatgggaaag 38793259
Score = 262 bits (132), Expect = 6e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 227 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38856163 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 38856222
Query: 287 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38856223 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 38856282
Query: 347 tggatgggaaag 358
||||||||||||
Sbjct: 38856283 tggatgggaaag 38856294
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 765 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38746763 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 38746704
Query: 825 ccatccaggacggggacatgtg 846
||||||||||||||||||||||
Sbjct: 38746703 ccatccaggacggggacatgtg 38746682
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 765 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38936117 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 38936176
Query: 825 ccatccaggacggggacatgtg 846
||||||||||||||||||||||
Sbjct: 38936177 ccatccaggacggggacatgtg 38936198
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 576 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38826977 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 38827036
Query: 636 gcgaggcccaccgggaggtaa 656
|||||||||||||||||||||
Sbjct: 38827037 gcgaggcccaccgggaggtaa 38827057
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 576 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38889993 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 38890052
Query: 636 gcgaggcccaccgggaggtaa 656
|||||||||||||||||||||
Sbjct: 38890053 gcgaggcccaccgggaggtaa 38890073
Score = 133 bits (67), Expect = 4e-28
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 698 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38748245 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 38748186
Query: 758 atctgcggcag 768
||||| |||||
Sbjct: 38748185 atctgtggcag 38748175
Score = 133 bits (67), Expect = 4e-28
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 698 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38934635 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 38934694
Query: 758 atctgcggcag 768
||||| |||||
Sbjct: 38934695 atctgtggcag 38934705
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 358 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38801716 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 38801775
Query: 418 cgag 421
||||
Sbjct: 38801776 cgag 38801779
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 358 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38864747 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 38864806
Query: 418 cgag 421
||||
Sbjct: 38864807 cgag 38864810
Score = 113 bits (57), Expect = 3e-22
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 469 gcgcggcgtcaacaccgacagcggcagtgtctgccgggaggcctccttcgagggcatcag 528
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 38810665 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 38810724
Query: 529 caagt 533
|||||
Sbjct: 38810725 caagt 38810729
Score = 113 bits (57), Expect = 3e-22
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 469 gcgcggcgtcaacaccgacagcggcagtgtctgccgggaggcctccttcgagggcatcag 528
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 38873696 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 38873755
Query: 529 caagt 533
|||||
Sbjct: 38873756 caagt 38873760
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 420 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 469
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38809293 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 38809342
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 420 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 469
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38872324 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 38872373
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 651 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 699
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38828136 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 38828184
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 651 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 699
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38891151 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 38891199
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 532 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 576
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38818506 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 38818550
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 cttcacgtgacgcaggagccgggaaagcatggcggcggccactgg 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38845229 cttcacgtgacgcaggagccgggaaagcatggcggcggccactgg 38845273
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 532 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 576
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38881522 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 38881566
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,414,319
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 25
Length of query: 1780
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1758
Effective length of database: 2,808,408,574
Effective search space: 4937182273092
Effective search space used: 4937182273092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)