Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073787.2| xaa-Pro dipeptidase [Bos taurus]. 607 e-174
Alignment gi|NP_001179123.1| probable Xaa-Pro aminopeptidase 3 [Bos tauru... 85 1e-16
Alignment gi|XP_002687987.1| PREDICTED: X-prolyl aminopeptidase (aminopep... 85 1e-16
>ref|NP_001073787.2| xaa-Pro dipeptidase [Bos taurus].
Length = 493
Score = 607 bits (1566), Expect(3) = e-174
Identities = 290/304 (95%), Positives = 297/304 (97%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKN AVQAGS VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNTAVQAGSAVVLQGGEETQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
TGVLFRQESFFHWAFGVTEPGCYGVI++D+GTSTLFVPRLPPSHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVINVDTGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDV Y DEIASVLTSRSPSVLLTLRGVNTDSGS+CREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSRSPSVLLTLRGVNTDSGSICREASFEGISKFNVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCICGSGENSAVLHYGHAGAPND+TIQDGDMC+FDMGGEYYCFASDITCSFPANGKF
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDKTIQDGDMCVFDMGGEYYCFASDITCSFPANGKFTP 300
Query: 935 DQKA 946
DQKA
Sbjct: 301 DQKA 304
Score = 23.9 bits (50), Expect(3) = e-174
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 940 EGIYXXVLXSCRAVMNS 990
+ IY VL SCRAVM++
Sbjct: 303 KAIYEAVLRSCRAVMSA 319
Score = 23.5 bits (49), Expect(3) = e-174
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 320 MKPGVWW 326
>ref|NP_001179123.1| probable Xaa-Pro aminopeptidase 3 [Bos taurus].
Length = 507
Score = 84.7 bits (208), Expect = 1e-16
Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 18/298 (6%)
Frame = +2
Query: 101 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 271
+ L R +L + K Q+G+ VV+L T D +F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKEAQEQSGTDHTVVLLSN--PTYYMSNDIPYIFHQDNNFLYLCGFQE 129
Query: 272 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 433
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 434 SVLTSRSPSVLLTL---------RGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECR 586
L + + TL + ++ D E +K ++ R
Sbjct: 190 H-LVPKLKAETHTLWYDWMRPAHKQLHCDYMQQLAEVKARSKNKVRAVQQLVQ----RLR 244
Query: 587 VFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCI 766
+ K+ E+E ++ K++S+A E M A K ++E + + FE C +RG +Y +
Sbjct: 245 LIKSPAEIERMQVAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPV 303
Query: 767 CGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPEDQ 940
G S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+F Q
Sbjct: 304 VAGGNRSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQ 357
>ref|XP_002687987.1| PREDICTED: X-prolyl aminopeptidase (aminopeptidase P) 3, putative
[Bos taurus].
Length = 507
Score = 84.7 bits (208), Expect = 1e-16
Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 18/298 (6%)
Frame = +2
Query: 101 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 271
+ L R +L + K Q+G+ VV+L T D +F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKEAQEQSGTDHTVVLLSN--PTYYMSNDIPYIFHQDNNFLYLCGFQE 129
Query: 272 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 433
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 434 SVLTSRSPSVLLTL---------RGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECR 586
L + + TL + ++ D E +K ++ R
Sbjct: 190 H-LVPKLKAETHTLWYDWMRPAHKQLHCDYMQQLAEVKARSKNKVRAVQQLVQ----RLR 244
Query: 587 VFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCI 766
+ K+ E+E ++ K++S+A E M A K ++E + + FE C +RG +Y +
Sbjct: 245 LIKSPAEIERMQVAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPV 303
Query: 767 CGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPEDQ 940
G S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+F Q
Sbjct: 304 VAGGNRSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQ 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,986,555
Number of extensions: 966352
Number of successful extensions: 3592
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3584
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533702.2| PREDICTED: similar to Xaa-Pro dipeptidase (X-Pr... 593 e-170
Alignment gi|XP_538358.2| PREDICTED: similar to CG9581-PA [Canis familiar... 86 6e-17
>ref|XP_533702.2| PREDICTED: similar to Xaa-Pro dipeptidase (X-Pro dipeptidase)
(Proline dipeptidase) (Prolidase) (Imidodipeptidase)
[Canis familiaris].
Length = 493
Score = 593 bits (1529), Expect(3) = e-170
Identities = 283/304 (93%), Positives = 296/304 (97%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGSVV+LQGGE+TQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFGLNRQRLCERLRKNPAVQAGSVVLLQGGEDTQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
TGVLFRQESFFHWAFGVT+PGCYG I++ +GTSTLFVPRLP S+ATWMGKIHSKE+FKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTDPGCYGTINVGTGTSTLFVPRLPASYATWMGKIHSKEYFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDV Y DEIASVLTS+SPSVLLTLRGVNTDSGSVCREASFEGIS+FNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSQSPSVLLTLRGVNTDSGSVCREASFEGISRFNVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VECRVFKTDMELEVLRYTN+ISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNRISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCF+SDITCSFPANGKF
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFSSDITCSFPANGKFTA 300
Query: 935 DQKA 946
DQKA
Sbjct: 301 DQKA 304
Score = 23.9 bits (50), Expect(3) = e-170
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 940 EGIYXXVLXSCRAVMNS 990
+ IY VL SCRAVM++
Sbjct: 303 KAIYEAVLRSCRAVMSA 319
Score = 23.5 bits (49), Expect(3) = e-170
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 320 MKPGVWW 326
>ref|XP_538358.2| PREDICTED: similar to CG9581-PA [Canis familiaris].
Length = 507
Score = 85.9 bits (211), Expect = 6e-17
Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 13/293 (4%)
Frame = +2
Query: 101 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 271
+ L R +L + K Q+G+ VV+L T D F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIHKETQDQSGTDQTVVLLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 272 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 433
P V+ + + + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPAHKAMLFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 434 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 601
++ + +R + S + E ++ + I R+ K+
Sbjct: 190 HLVPKLKDETNMVWYDWMRPSHAQLHSDYMQQLTEVKARSKNKVRAVQQLIQRLRLIKSP 249
Query: 602 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 781
E+E ++ K++S+A E M A K ++E + + FE C +RG +Y + G
Sbjct: 250 AEIERMQIAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 782 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPEDQ 940
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+F Q
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQ 357
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,645,397
Number of extensions: 999653
Number of successful extensions: 3816
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3804
Number of HSP's successfully gapped: 4
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000276.2| xaa-Pro dipeptidase isoform 1 [Homo sapiens]. 601 e-172
Alignment gi|NP_001159528.1| xaa-Pro dipeptidase isoform 2 [Homo sapiens]. 504 e-143
Alignment gi|NP_001159529.1| xaa-Pro dipeptidase isoform 3 [Homo sapiens]. 347 7e-96
Alignment gi|NP_071381.1| probable Xaa-Pro aminopeptidase 3 isoform 1 [Ho... 90 3e-18
>ref|NP_000276.2| xaa-Pro dipeptidase isoform 1 [Homo sapiens].
Length = 493
Score = 601 bits (1550), Expect(2) = e-172
Identities = 287/304 (94%), Positives = 295/304 (97%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
TGVLFRQESFFHWAFGVTEPGCYGVID+D+G STLFVPRLP SHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDV Y DEIASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHPEI
Sbjct: 121 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYE+ESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSS 240
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKF
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTA 300
Query: 935 DQKA 946
DQKA
Sbjct: 301 DQKA 304
Score = 23.5 bits (49), Expect(2) = e-172
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 320 MKPGVWW 326
>ref|NP_001159528.1| xaa-Pro dipeptidase isoform 2 [Homo sapiens].
Length = 452
Score = 504 bits (1298), Expect(2) = e-143
Identities = 247/304 (81%), Positives = 254/304 (83%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
TGVLFRQESFFHWAFGVTEPGCYGVID+D+G STLFVPRLP SHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDV Y DEIASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHPEI
Sbjct: 121 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VEC LFEHYCYSRGGMRHSS
Sbjct: 181 VEC-----------------------------------------LFEHYCYSRGGMRHSS 199
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKF
Sbjct: 200 YTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTA 259
Query: 935 DQKA 946
DQKA
Sbjct: 260 DQKA 263
Score = 23.5 bits (49), Expect(2) = e-143
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 279 MKPGVWW 285
>ref|NP_001159529.1| xaa-Pro dipeptidase isoform 3 [Homo sapiens].
Length = 429
Score = 347 bits (889), Expect(2) = 7e-96
Identities = 167/186 (89%), Positives = 174/186 (93%)
Frame = +2
Query: 389 EKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHP 568
++Y D +IASVLTS+ PSVLLTLRGVNTDSGSVCREASF+GISKF VNNTILHP
Sbjct: 55 QRYCTDTGVLFRQIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHP 114
Query: 569 EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRH 748
EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYE+ESLFEHYCYSRGGMRH
Sbjct: 115 EIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRH 174
Query: 749 SSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKF 928
SSYTCICGSGENSAVLHYGHAGAPNDRTIQ+GDMCLFDMGGEYYCFASDITCSFPANGKF
Sbjct: 175 SSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKF 234
Query: 929 PEDQKA 946
DQKA
Sbjct: 235 TADQKA 240
Score = 23.5 bits (49), Expect(2) = 7e-96
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 256 MKPGVWW 262
Score = 134 bits (337), Expect = 1e-31
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALF LNR+RLCERLRKNPAVQAGS+VVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 60
Query: 215 TGVLFRQ 235
TGVLFRQ
Sbjct: 61 TGVLFRQ 67
>ref|NP_071381.1| probable Xaa-Pro aminopeptidase 3 isoform 1 [Homo sapiens].
Length = 507
Score = 90.1 bits (222), Expect = 3e-18
Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 13/293 (4%)
Frame = +2
Query: 101 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 271
+ L R +L ++K Q+G+ VVVL T D F Q++ F + G E
Sbjct: 72 YALRRHKLMSLIQKEAQGQSGTDQTVVVLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 272 PGCYGVID------IDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 433
P V+ + S + LFVPR PS W G + VD+ + +E
Sbjct: 130 PDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQ 189
Query: 434 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 601
+L + +R + S + E +K + I R+ K+
Sbjct: 190 HLLPKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRGVQQLIQRLRLIKSP 249
Query: 602 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 781
E+E ++ K++S+A E M K ++E + + FE C +RG +Y + G
Sbjct: 250 AEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 782 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPEDQ 940
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+F Q
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQ 357
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,763,835
Number of extensions: 972871
Number of successful extensions: 3684
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3673
Number of HSP's successfully gapped: 9
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032846.2| xaa-Pro dipeptidase [Mus musculus]. 565 e-161
Alignment gi|NP_796284.1| probable Xaa-Pro aminopeptidase 3 [Mus musculus]. 82 9e-16
>ref|NP_032846.2| xaa-Pro dipeptidase [Mus musculus].
Length = 493
Score = 565 bits (1457), Expect(2) = e-161
Identities = 271/304 (89%), Positives = 286/304 (94%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MA+ PSF LGNETLKVPLALF LNR+RLCERLRKN AVQA S VVLQGGEE QRYCTD
Sbjct: 1 MASTVRPSFSLGNETLKVPLALFALNRQRLCERLRKNGAVQAASAVVLQGGEEMQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
T ++FRQESFFHWAFGV E GCYGVID+D+G STLFVPRLP S+ATWMGKIHSKE+FKEK
Sbjct: 61 TSIIFRQESFFHWAFGVVESGCYGVIDVDTGKSTLFVPRLPDSYATWMGKIHSKEYFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDV Y DEIASVLTSR+PSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVQYTDEIASVLTSRNPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VECRVFKTDMELEVLRYTN+ISSEAHREVMKAVKVGMKEYEMESLF+HYCYSRGGMRH+S
Sbjct: 181 VECRVFKTDMELEVLRYTNRISSEAHREVMKAVKVGMKEYEMESLFQHYCYSRGGMRHTS 240
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCIC SGEN+AVLHYGHAGAPNDRTI+DGD+CLFDMGGEYYCFASDITCSFPANGKF E
Sbjct: 241 YTCICCSGENAAVLHYGHAGAPNDRTIKDGDICLFDMGGEYYCFASDITCSFPANGKFTE 300
Query: 935 DQKA 946
DQKA
Sbjct: 301 DQKA 304
Score = 23.5 bits (49), Expect(2) = e-161
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 320 MKPGVWW 326
>ref|NP_796284.1| probable Xaa-Pro aminopeptidase 3 [Mus musculus].
Length = 386
Score = 81.6 bits (200), Expect = 9e-16
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 13/292 (4%)
Frame = +2
Query: 101 FVLNRRRLCERLRKNPAVQAGS---VVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTE 271
+ L R +L + K +G+ VVVL T D F Q++ F + G E
Sbjct: 72 YALRRHKLMALVHKEAQGHSGTDHTVVVLSN--PTYYMSNDIPYTFHQDNNFLYLCGFQE 129
Query: 272 PGCYGVIDIDSGT------STLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIA 433
P V+ SG + LFVPR P W G + VD+ + +E
Sbjct: 130 PDSILVLQSFSGKQLPSHKAMLFVPRRDPGRELWDGPRSGTDGAIALTGVDEAYPLEEFQ 189
Query: 434 SVLTSRSPSVLLT----LRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTD 601
+L + ++ + S + E ++ + I R+ K+
Sbjct: 190 HLLPKLRAETNMVWYDWMKPSHAQLHSDYMQPLTEAKARSKNKVRSVQQLIQRLRLVKSP 249
Query: 602 MELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGE 781
E++ ++ K++SEA E M A K + E + + FE C +RG +Y + G
Sbjct: 250 SEIKRMQIAGKLTSEAFIETMFASKAPIDEAFLYAKFEFECRARGA-DILAYPPVVAGGN 308
Query: 782 NSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPED 937
S LHY N++ I+DG+M L D G E C+ SDIT ++P NG+ E+
Sbjct: 309 RSNTLHY----VKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRLLEN 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,915,708
Number of extensions: 806470
Number of successful extensions: 3058
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3048
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127070.2| PREDICTED: xaa-Pro dipeptidase [Sus scrofa]. 628 0.0
>ref|XP_003127070.2| PREDICTED: xaa-Pro dipeptidase [Sus scrofa].
Length = 494
Score = 628 bits (1620), Expect(3) = 0.0
Identities = 303/304 (99%), Positives = 303/304 (99%)
Frame = +2
Query: 35 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 214
MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD
Sbjct: 1 MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTD 60
Query: 215 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 394
TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK
Sbjct: 61 TGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEK 120
Query: 395 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 574
YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI
Sbjct: 121 YAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEI 180
Query: 575 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 754
VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS
Sbjct: 181 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSS 240
Query: 755 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFPE 934
YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKF E
Sbjct: 241 YTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTE 300
Query: 935 DQKA 946
DQKA
Sbjct: 301 DQKA 304
Score = 26.9 bits (58), Expect(3) = 0.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 940 EGIYXXVLXSCRAVMNS 990
+ IY VL SCRAVMNS
Sbjct: 303 KAIYEAVLRSCRAVMNS 319
Score = 23.5 bits (49), Expect(3) = 0.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 990 MKPGVWW 1010
MKPGVWW
Sbjct: 320 MKPGVWW 326
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,249,506
Number of extensions: 623885
Number of successful extensions: 2419
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2411
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002469
(1011 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 369 2e-99
>Sscrofa_Chr06
|| Length = 157765593
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 51 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791116 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 38791175
Query: 111 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791176 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 38791235
Query: 171 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38791236 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 38791295
Query: 231 gccagg 236
||||||
Sbjct: 38791296 gccagg 38791301
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 51 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854154 gaccctcgttttggctgggcaatgaaaccctgaaggtgccgctggcgctgtttgtcctga 38854213
Query: 111 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854214 acaggcggcgcctgtgtgagcggctgcggaagaaccctgcggtgcaggccggctctgtgg 38854273
Query: 171 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38854274 tggtgctgcagggcggggaggagacgcagcgctactgcactgacactggggtccttttcc 38854333
Query: 231 gccagg 236
||||||
Sbjct: 38854334 gccagg 38854339
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 233 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38793128 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 38793187
Query: 293 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38793188 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 38793247
Query: 353 tggatgggaaag 364
||||||||||||
Sbjct: 38793248 tggatgggaaag 38793259
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 233 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38856163 caggagtccttctttcactgggcgtttggtgtcaccgagccaggctgctacggcgtgatt 38856222
Query: 293 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38856223 gacatagactctgggacatccactctgttcgtgcccaggcttcctcccagccatgccacc 38856282
Query: 353 tggatgggaaag 364
||||||||||||
Sbjct: 38856283 tggatgggaaag 38856294
Score = 220 bits (111), Expect = 1e-54
Identities = 142/151 (94%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 852 gcctgttcgacatgggcggtgagtactactgcttcgcctcggatatcacgtgctcctttc 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38736433 gcctgttcgacatgggcggtgagtactactgcttcgcctcggatatcacgtgctcctttc 38736374
Query: 912 ccgccaacggcaagttccccgaggaccagaagg-catctacnanngcgtgctgcngagct 970
||||||||||||||||| ||||||||||||||| ||||||| | ||||||| |||||
Sbjct: 38736373 ccgccaacggcaagttcaccgaggaccagaaggccatctacgaggcggtgctgcggagct 38736314
Query: 971 gccgggccgtcatgaact-catgaagccagg 1000
|||||||||||||||||| ||||||||||||
Sbjct: 38736313 gccgggccgtcatgaactccatgaagccagg 38736283
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 771 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38746763 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 38746704
Query: 831 ccatccaggacggggacatgtg 852
||||||||||||||||||||||
Sbjct: 38746703 ccatccaggacggggacatgtg 38746682
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 771 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38936117 gcagtggtgagaactcggccgtgctgcactacggacacgccggggcccccaacgaccgga 38936176
Query: 831 ccatccaggacggggacatgtg 852
||||||||||||||||||||||
Sbjct: 38936177 ccatccaggacggggacatgtg 38936198
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 582 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38826977 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 38827036
Query: 642 gcgaggcccaccgggaggtaa 662
|||||||||||||||||||||
Sbjct: 38827037 gcgaggcccaccgggaggtaa 38827057
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 582 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38889993 gccgggtcttcaagacggacatggagctggaggttttgcgctacaccaataaaatttcca 38890052
Query: 642 gcgaggcccaccgggaggtaa 662
|||||||||||||||||||||
Sbjct: 38890053 gcgaggcccaccgggaggtaa 38890073
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 704 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38748245 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 38748186
Query: 764 atctgcggcag 774
||||| |||||
Sbjct: 38748185 atctgtggcag 38748175
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 704 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38934635 agcctcttcgagcactactgctactcccggggcggcatgcgccacagctcctacacctgc 38934694
Query: 764 atctgcggcag 774
||||| |||||
Sbjct: 38934695 atctgtggcag 38934705
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 475 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38810665 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 38810724
Query: 535 caagt 539
|||||
Sbjct: 38810725 caagt 38810729
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 475 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38873696 gcgcggcgtcaacaccgacagcggcagtgtctgcagggaggcctcctttgagggcatcag 38873755
Query: 535 caagt 539
|||||
Sbjct: 38873756 caagt 38873760
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 364 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38801716 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 38801775
Query: 424 cgag 427
||||
Sbjct: 38801776 cgag 38801779
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 364 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38864747 gatccactccaaggagcacttcaaggagaagtacgccgtggacgacgtccattatgcgga 38864806
Query: 424 cgag 427
||||
Sbjct: 38864807 cgag 38864810
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 426 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38809293 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 38809342
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 426 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38872324 agatcgccagcgtcctgacatcacggagcccctctgtcctcctcactttg 38872373
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 657 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 705
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38828136 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 38828184
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 657 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 705
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38891151 aggtaatgaaggctgtaaaagtgggaatgaaagaatacgaaatggaaag 38891199
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 4 gcacttcacgtgacgcaggagccgggaaagcatggcggcggccactgg 51
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38845226 gcacttcacgtgacgcaggagccgggaaagcatggcggcggccactgg 38845273
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 538 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38818506 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 38818550
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 538 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 582
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Sbjct: 38881522 gttcaatgtcaacaataccattcttcatccggagatcgtggaatg 38881566
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,372,476
Number of extensions: 113
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 22
Length of query: 1011
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 990
Effective length of database: 2,808,413,156
Effective search space: 2780329024440
Effective search space used: 2780329024440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)