Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691004.1| PREDICTED: retinoblastoma-binding protein 1-... 426 e-119
Alignment gi|XP_869439.1| PREDICTED: retinoblastoma-binding protein 1 iso... 426 e-119
Alignment gi|NP_001193062.1| AT-rich interactive domain-containing protei... 299 4e-81
Alignment gi|XP_002698841.1| PREDICTED: AT rich interactive domain 4B (RB... 299 4e-81
>ref|XP_002691004.1| PREDICTED: retinoblastoma-binding protein 1-like [Bos taurus].
Length = 1261
Score = 426 bits (1096), Expect = e-119
Identities = 224/290 (77%), Positives = 230/290 (79%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKK NRGRR SSLPVN RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKMNRGRR-SSLPVNEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
EK+EWYPALV+SPSCNDDITVKKDQCLIRSFIDSKFYSI RKDIKEVDIL+LPE
Sbjct: 180 SVVSTSEKSEWYPALVISPSCNDDITVKKDQCLIRSFIDSKFYSIARKDIKEVDILNLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELSAKPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 240 SELSAKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENEE 289
>ref|XP_869439.1| PREDICTED: retinoblastoma-binding protein 1 isoform 2 [Bos taurus].
Length = 1261
Score = 426 bits (1096), Expect = e-119
Identities = 224/290 (77%), Positives = 230/290 (79%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKK NRGRR SSLPVN RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKMNRGRR-SSLPVNEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
EK+EWYPALV+SPSCNDDITVKKDQCLIRSFIDSKFYSI RKDIKEVDIL+LPE
Sbjct: 180 SVVSTSEKSEWYPALVISPSCNDDITVKKDQCLIRSFIDSKFYSIARKDIKEVDILNLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELSAKPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 240 SELSAKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENEE 289
>ref|NP_001193062.1| AT-rich interactive domain-containing protein 4B [Bos taurus].
Length = 1312
Score = 299 bits (765), Expect = 4e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
+P+ + K +A F K+R +P NWK
Sbjct: 238 VPKPDAVLKQAFDQALEFHKSRTIPANWK 266
>ref|XP_002698841.1| PREDICTED: AT rich interactive domain 4B (RBP1-like) [Bos taurus].
Length = 1312
Score = 299 bits (765), Expect = 4e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
+P+ + K +A F K+R +P NWK
Sbjct: 238 VPKPDAVLKQAFDQALEFHKSRTIPANWK 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,299,609
Number of extensions: 915943
Number of successful extensions: 2918
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2892
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537461.2| PREDICTED: similar to retinoblastoma-binding pr... 419 e-117
Alignment gi|XP_856821.1| PREDICTED: similar to AT rich interactive domai... 298 7e-81
Alignment gi|XP_546077.2| PREDICTED: similar to AT rich interactive domai... 298 7e-81
Alignment gi|XP_856695.1| PREDICTED: similar to AT rich interactive domai... 298 7e-81
Alignment gi|XP_856659.1| PREDICTED: similar to AT rich interactive domai... 298 7e-81
Alignment gi|XP_848716.1| PREDICTED: similar to AT rich interactive domai... 297 2e-80
Alignment gi|XP_856780.1| PREDICTED: similar to AT rich interactive domai... 289 4e-78
>ref|XP_537461.2| PREDICTED: similar to retinoblastoma-binding protein 1 isoform I
isoform 1 [Canis familiaris].
Length = 1249
Score = 419 bits (1076), Expect = e-117
Identities = 219/290 (75%), Positives = 229/290 (78%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEA+ISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRR SSLP RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRR-SSLP------EEESSEEEDEDKRRLNDELLGKVV 173
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
EKT+WYPALV+SPSCNDDITVKKDQCL+RSF+DSKFYSI RKDIKEVDIL+LPE
Sbjct: 174 SVASTSEKTDWYPALVISPSCNDDITVKKDQCLVRSFLDSKFYSIARKDIKEVDILNLPE 233
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELSAKPGLQKASIFLKTR+VPDNWKM GP+ +N E
Sbjct: 234 SELSAKPGLQKASIFLKTRIVPDNWKMDISEILESSSSDDEDGPAEENDE 283
>ref|XP_856821.1| PREDICTED: similar to AT rich interactive domain 4B isoform 2 isoform
7 [Canis familiaris].
Length = 1228
Score = 298 bits (763), Expect = 7e-81
Identities = 155/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K +A F K+R +P NWK
Sbjct: 238 TPKPDAILKQAFDQALEFHKSRTIPANWK 266
>ref|XP_546077.2| PREDICTED: similar to AT rich interactive domain 4B isoform 1 isoform
1 [Canis familiaris].
Length = 1312
Score = 298 bits (763), Expect = 7e-81
Identities = 155/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K +A F K+R +P NWK
Sbjct: 238 TPKPDAILKQAFDQALEFHKSRTIPANWK 266
>ref|XP_856695.1| PREDICTED: similar to AT rich interactive domain 4B isoform 2 isoform
5 [Canis familiaris].
Length = 1076
Score = 298 bits (763), Expect = 7e-81
Identities = 155/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K +A F K+R +P NWK
Sbjct: 238 TPKPDAILKQAFDQALEFHKSRTIPANWK 266
>ref|XP_856659.1| PREDICTED: similar to AT rich interactive domain 4B isoform 1 isoform
4 [Canis familiaris].
Length = 1312
Score = 298 bits (763), Expect = 7e-81
Identities = 155/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K +A F K+R +P NWK
Sbjct: 238 TPKPDAILKQAFDQALEFHKSRTIPANWK 266
>ref|XP_848716.1| PREDICTED: similar to AT rich interactive domain 4B isoform 1 isoform
3 [Canis familiaris].
Length = 1315
Score = 297 bits (760), Expect = 2e-80
Identities = 154/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ + + R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHI-ITPEEESSSSSSDEDEDDRKQIDELLGKVV 179
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 180 CVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 239
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K +A F K+R +P NWK
Sbjct: 240 TPKPDAILKQAFDQALEFHKSRTIPANWK 268
>ref|XP_856780.1| PREDICTED: similar to AT rich interactive domain 4B isoform 1 isoform
6 [Canis familiaris].
Length = 1311
Score = 289 bits (739), Expect = 4e-78
Identities = 151/266 (56%), Positives = 179/266 (67%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
++ W VV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ + P+
Sbjct: 178 CVQSREDEI-WIIVPVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDTTPK 236
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWK 1026
+ K +A F K+R +P NWK
Sbjct: 237 PDAILKQAFDQALEFHKSRTIPANWK 262
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,851,269
Number of extensions: 934642
Number of successful extensions: 3189
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3170
Number of HSP's successfully gapped: 7
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075377.2| AT-rich interactive domain-containing protein 4... 425 e-119
Alignment gi|NP_075376.2| AT-rich interactive domain-containing protein 4... 425 e-119
Alignment gi|NP_002883.3| AT-rich interactive domain-containing protein 4... 425 e-119
Alignment gi|NP_112739.2| AT-rich interactive domain-containing protein 4... 299 4e-81
Alignment gi|NP_057458.4| AT-rich interactive domain-containing protein 4... 299 4e-81
Alignment gi|NP_001193723.1| AT-rich interactive domain-containing protei... 299 4e-81
>ref|NP_075377.2| AT-rich interactive domain-containing protein 4A isoform III [Homo
sapiens].
Length = 1188
Score = 425 bits (1092), Expect = e-119
Identities = 221/290 (76%), Positives = 229/290 (78%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEA+ISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRR SSLPV RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRR-SSLPVTEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
E+TEWYPALV+SPSCNDDITVKKDQCL+RSFIDSKFYSI RKDIKEVDIL+LPE
Sbjct: 180 SVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILNLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELS KPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 240 SELSTKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENDE 289
>ref|NP_075376.2| AT-rich interactive domain-containing protein 4A isoform II [Homo
sapiens].
Length = 1203
Score = 425 bits (1092), Expect = e-119
Identities = 221/290 (76%), Positives = 229/290 (78%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEA+ISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRR SSLPV RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRR-SSLPVTEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
E+TEWYPALV+SPSCNDDITVKKDQCL+RSFIDSKFYSI RKDIKEVDIL+LPE
Sbjct: 180 SVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILNLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELS KPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 240 SELSTKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENDE 289
>ref|NP_002883.3| AT-rich interactive domain-containing protein 4A isoform I [Homo
sapiens].
Length = 1257
Score = 425 bits (1092), Expect = e-119
Identities = 221/290 (76%), Positives = 229/290 (78%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEA+ISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRR SSLPV RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRR-SSLPVTEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
E+TEWYPALV+SPSCNDDITVKKDQCL+RSFIDSKFYSI RKDIKEVDIL+LPE
Sbjct: 180 SVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILNLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELS KPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 240 SELSTKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENDE 289
>ref|NP_112739.2| AT-rich interactive domain-containing protein 4B isoform 2 [Homo
sapiens].
Length = 1226
Score = 299 bits (765), Expect = 4e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K ++A F K+R +P NWK
Sbjct: 238 APKPDAVLKQAFEQALEFHKSRTIPANWK 266
>ref|NP_057458.4| AT-rich interactive domain-containing protein 4B isoform 1 [Homo
sapiens].
Length = 1312
Score = 299 bits (765), Expect = 4e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K ++A F K+R +P NWK
Sbjct: 238 APKPDAVLKQAFEQALEFHKSRTIPANWK 266
>ref|NP_001193723.1| AT-rich interactive domain-containing protein 4B isoform 2 [Homo
sapiens].
Length = 1312
Score = 299 bits (765), Expect = 4e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
P+ + K ++A F K+R +P NWK
Sbjct: 238 APKPDAVLKQAFEQALEFHKSRTIPANWK 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,143,106
Number of extensions: 918237
Number of successful extensions: 2962
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2932
Number of HSP's successfully gapped: 6
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074664.1| AT-rich interactive domain-containing protei... 407 e-114
Alignment gi|NP_937755.1| AT-rich interactive domain-containing protein 4... 300 1e-81
Alignment gi|NP_919238.1| AT-rich interactive domain-containing protein 4... 300 1e-81
>ref|NP_001074664.1| AT-rich interactive domain-containing protein 4A [Mus musculus].
Length = 1261
Score = 407 bits (1047), Expect = e-114
Identities = 207/267 (77%), Positives = 219/267 (82%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGT+VSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGS QEA+ISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSIQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRR SSLP+ RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRR-SSLPITEDEKEEESSEEEDEDKRRLNDELLGKVV 179
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
E T WYPALVVSPSCNDD+TVKKDQCL+RSFIDSKFYSI RKDIKE+DIL+LPE
Sbjct: 180 SVASTAESTGWYPALVVSPSCNDDVTVKKDQCLVRSFIDSKFYSIARKDIKELDILTLPE 239
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKM 1029
SEL A+PGL++AS+FLK R+VPDNWKM
Sbjct: 240 SELCARPGLRRASVFLKGRIVPDNWKM 266
>ref|NP_937755.1| AT-rich interactive domain-containing protein 4B isoform 2 [Mus
musculus].
Length = 1227
Score = 300 bits (769), Expect = 1e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDDDEEERKQTDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLEKKKAMWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
+P+ + K +A F K+R +P NWK
Sbjct: 238 VPKPDAVLKQAFDQALEFHKSRAIPANWK 266
>ref|NP_919238.1| AT-rich interactive domain-containing protein 4B isoform 1 [Mus
musculus].
Length = 1314
Score = 300 bits (769), Expect = 1e-81
Identities = 155/269 (57%), Positives = 184/269 (68%), Gaps = 3/269 (1%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL
Sbjct: 1 MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
+VGAIVE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETL
Sbjct: 61 KVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK-- 762
DQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDDDEEERKQTDELLGKVV 177
Query: 763 -XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILS 939
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ +
Sbjct: 178 CVDYVSLEKKKAMWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDT 237
Query: 940 LPESELSAKPGLQKASIFLKTRVVPDNWK 1026
+P+ + K +A F K+R +P NWK
Sbjct: 238 VPKPDAVLKQAFDQALEFHKSRAIPANWK 266
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,254,036
Number of extensions: 773374
Number of successful extensions: 2358
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2343
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928265.1| PREDICTED: AT-rich interactive domain-contai... 442 e-124
Alignment gi|XP_003359244.1| PREDICTED: AT-rich interactive domain-contai... 293 1e-79
Alignment gi|XP_003359241.1| PREDICTED: AT-rich interactive domain-contai... 266 1e-71
>ref|XP_001928265.1| PREDICTED: AT-rich interactive domain-containing protein 4A isoform 1
[Sus scrofa].
Length = 1259
Score = 442 bits (1136), Expect = e-124
Identities = 230/290 (79%), Positives = 233/290 (80%)
Frame = +1
Query: 229 MKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPL 408
MKAADEPAYLTVGTEVSAKYRGAFCEA QDNTTQLVQDDQVKGPL
Sbjct: 1 MKAADEPAYLTVGTEVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL 60
Query: 409 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 588
RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL
Sbjct: 61 RVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETL 120
Query: 589 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGKXX 768
DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVN RRLNDELLGK
Sbjct: 121 DQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNEDEKEEESSEEEDEDKRRLNDELLGKVV 180
Query: 769 XXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 948
EKTEWYPALV+SPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE
Sbjct: 181 SVVSSSEKTEWYPALVISPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLPE 240
Query: 949 SELSAKPGLQKASIFLKTRVVPDNWKMXXXXXXXXXXXXXXXGPS*KNGE 1098
SELSAKPGLQKASIFLKTRVVPDNWKM GP+ +N E
Sbjct: 241 SELSAKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENEE 290
>ref|XP_003359244.1| PREDICTED: AT-rich interactive domain-containing protein 4B, partial
[Sus scrofa].
Length = 1307
Score = 293 bits (751), Expect = 1e-79
Identities = 152/267 (56%), Positives = 181/267 (67%), Gaps = 3/267 (1%)
Frame = +1
Query: 235 AADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGPLRV 414
A DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGPL+V
Sbjct: 1 ALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKV 60
Query: 415 GAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETLDQ 594
GA+VE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESETLDQ
Sbjct: 61 GALVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQ 120
Query: 595 LPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK---X 765
LPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 121 LPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKVVCV 177
Query: 766 XXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIPRKDIKEVDILSLP 945
+K W+PALVV P C+D+I VKKD L+RSF D KF S+PRKD+ E+ + P
Sbjct: 178 DYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDTAP 237
Query: 946 ESELSAKPGLQKASIFLKTRVVPDNWK 1026
+ + K +A F K+R +P NWK
Sbjct: 238 KPDAVLKQAFDQALEFHKSRTIPANWK 264
>ref|XP_003359241.1| PREDICTED: AT-rich interactive domain-containing protein 4B-like
[Sus scrofa].
Length = 356
Score = 266 bits (681), Expect = 1e-71
Identities = 138/230 (60%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Frame = +1
Query: 226 KMKAADEPAYLTVGTEVSAKYRGAFCEAXXXXXXXXXXXXXXXXQDNTTQLVQDDQVKGP 405
+ KA DEP YLTVGT+VSAKYRGAFCEA D++T VQDD +KGP
Sbjct: 18 EFKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGP 77
Query: 406 LRVGAIVETRTSDGSFQEAVISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESET 585
L+VGA+VE + DG++QEAVI+KLTDASWYTVVFDDGDE+TLRR+SLCLKGERHFAESET
Sbjct: 78 LKVGALVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESET 137
Query: 586 LDQLPLTNPEHFGTPVIAKKTNRGRRSSSLPVNXXXXXXXXXXXXXXXXRRLNDELLGK- 762
LDQLPLTNPEHFGTPVI KKTNRGRRS+ +P R+ DELLGK
Sbjct: 138 LDQLPLTNPEHFGTPVIGKKTNRGRRSNHIP---EEESSSSSSDEDEDDRKQIDELLGKV 194
Query: 763 --XXXXXXXXEKTEWYPALVVSPSCNDDITVKKDQCLIRSFIDSKFYSIP 906
+K W+PALVV P C+D+I VKKD L+RSF D KF ++P
Sbjct: 195 VCVDYVSLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFAALP 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,730,821
Number of extensions: 598572
Number of successful extensions: 1897
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002475
(1198 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 351 6e-94
>Sscrofa_Chr01
|| Length = 315321322
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1 agcgagactgctcaacagcttgttatttggtggattgtggcagtaaatcgggcgagtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208288989 agcgagactgctcaacagcttgttatttggtggattgtggcagtaaatcgggcgagtagg 208289048
Query: 61 gaaccgggcgcaggaactgccgcggcggccgagagtggtgctgcccggacgggggcccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208289049 gaaccgggcgcaggaactgccgcggcggccgagagtggtgctgcccggacgggggcccac 208289108
Query: 121 gggggtcagtggggcggaggactcgggagctgacagcgcccacttcaccctcagttg 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208289109 gggggtcagtggggcggaggactcgggagctgacagcgcccacttcaccctcagttg 208289165
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 681 taatgaagatgaaaaagaagaagaaagtagtgaagaggaagatgaggataagcgacgtct 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208307045 taatgaagatgaaaaagaagaagaaagtagtgaagaggaagatgaggataagcgacgtct 208307104
Query: 741 caacgatgaattattaggaaaagttgtaagtgtggtatcttcatctgagaagactgaatg 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208307105 caacgatgaattattaggaaaagttgtaagtgtggtatcttcatctgagaagactgaatg 208307164
Query: 801 gtatcctgctttggta 816
||||||||||||||||
Sbjct: 208307165 gtatcctgctttggta 208307180
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 233 aggcggcggatgagcctgcctacctgacagtggggactgaggtcagtgccaagtaccgag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208292447 aggcggcggatgagcctgcctacctgacagtggggactgaggtcagtgccaagtaccgag 208292506
Query: 293 gtgccttctgtgaggcaaagattaagactgtgaaaaggctggtaaaagttaaggta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208292507 gtgccttctgtgaggcaaagattaagactgtgaaaaggctggtaaaagttaaggta 208292562
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 969 agggctacagaaagcaagcatcttcttaaaaactagagttgttcctgataattggaaaat 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208315293 agggctacagaaagcaagcatcttcttaaaaactagagttgttcctgataattggaaaat 208315352
Query: 1029 ggatataagtgaaatccttgagtcatctagtagtgatgatgaagatggtcc 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208315353 ggatataagtgaaatccttgagtcatctagtagtgatgatgaagatggtcc 208315403
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 581 agacacttgaccagcttccattaacaaatccagagcattttggaactccagtaattgcaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208305006 agacacttgaccagcttccattaacaaatccagagcattttggaactccagtaattgcaa 208305065
Query: 641 agaagacaaacagaggaaggaggtcctcctcgctgcctgt 680
||||||||||||||||||||||||||||||||||||||||
Sbjct: 208305066 agaagacaaacagaggaaggaggtcctcctcgctgcctgt 208305105
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 412 gttggagctattgttgaaacaaggacatctgatggatcctttcaggaagctgttatcagc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208295276 gttggagctattgttgaaacaaggacatctgatggatcctttcaggaagctgttatcagc 208295335
Query: 472 aagttgacagatgctagttggtatactgtgg 502
|||||||||||||||||||||||||||||||
Sbjct: 208295336 aagttgacagatgctagttggtatactgtgg 208295366
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 502 gtgtttgatgatggtgatgagcgaacactgagacgcacctcactttgcctaaaaggagag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208304838 gtgtttgatgatggtgatgagcgaacactgagacgcacctcactttgcctaaaaggagag 208304897
Query: 562 cggcattttgccgagagcgag 582
|||||||||||||||||||||
Sbjct: 208304898 cggcattttgccgagagcgag 208304918
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 813 ggtagtatctcccagctgtaatgatgatatcacagtgaaaaaagaccagtgtttaattcg 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208312464 ggtagtatctcccagctgtaatgatgatatcacagtgaaaaaagaccagtgtttaattcg 208312523
Query: 873 gtcatttattgattctaaatt 893
|||||||||||||||||||||
Sbjct: 208312524 gtcatttattgattctaaatt 208312544
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 894 ttattccataccaagaaaggatatcaaggaagtagatattctcagtctacctgaatctga 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208314837 ttattccataccaagaaaggatatcaaggaagtagatattctcagtctacctgaatctga 208314896
Query: 954 gctctctgctaaaccagg 971
||||||||||||||||||
Sbjct: 208314897 gctctctgctaaaccagg 208314914
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 344 aggtactcctgaaacaagataatactacacagttggtgcaagatgaccaagtaaagggtc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208294096 aggtactcctgaaacaagataatactacacagttggtgcaagatgaccaagtaaagggtc 208294155
Query: 404 ctttaagagt 413
||||||||||
Sbjct: 208294156 ctttaagagt 208294165
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 177 gcggtagagaagatagctcgttgagctggaaccccacagatcaccagtaaaaatgaagg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208290255 gcggtagagaagatagctcgttgagctggaaccccacagatcaccagtaaaaatgaagg 208290313
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,461,363
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 11
Length of query: 1198
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1177
Effective length of database: 2,808,413,156
Effective search space: 3305502284612
Effective search space used: 3305502284612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)