Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 372 e-107
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 374 e-106
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 214 3e-66
Alignment gi|NP_001029607.1| cathepsin K [Bos taurus]. 217 6e-59
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 158 7e-39
Alignment gi|NP_001068884.1| cathepsin F [Bos taurus]. 115 2e-27
Alignment gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus]. 80 6e-16
Alignment gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B... 80 6e-16
Alignment gi|NP_001103540.1| cathepsin W [Bos taurus]. 81 1e-15
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 65 1e-10
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 372 bits (954), Expect(2) = e-107
Identities = 176/245 (71%), Positives = 199/245 (81%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNPS L CLG+ASAAP+ D +LDA W++WKATHR+LYG+NEE RRAVWEKN K+I+
Sbjct: 1 MNPSFFLTVLCLGVASAAPKLDPNLDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIID 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ +GKH+F MAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F + P SVDW
Sbjct: 61 LHNQEYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLVDVPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
+KGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS +GN+GCNG
Sbjct: 121 TKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPSKRKRL*RPW 779
GLMDNAFQYIKDNGGLDSEESYPY D SC YKP+ SAANDTG+VDIP + K L +
Sbjct: 181 GLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATVGP 245
Score = 34.7 bits (78), Expect(2) = e-107
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS +DLDHGVLVVGYG
Sbjct: 270 CSCKDLDHGVLVVGYG 285
Score = 63.2 bits (152), Expect = 3e-10
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
++EKALMKAVATVGPISV IDA H SFQFY +GIY++ + K
Sbjct: 231 QREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSCK 273
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 374 bits (959), Expect(2) = e-106
Identities = 183/256 (71%), Positives = 204/256 (79%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNPSLLL A CLGIASAAP+ DHSLD W WKA HRK Y LNEEG R+AVW+KNMKMIE
Sbjct: 1 MNPSLLLTALCLGIASAAPKFDHSLDTQWKLWKAAHRKPYDLNEEGWRKAVWKKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ QGKHSF+MAMNAFGDMTNEEFR TMNGFQ QK+KKGK F + A P SVDW
Sbjct: 61 LHNQEYSQGKHSFSMAMNAFGDMTNEEFRHTMNGFQRQKNKKGKEFHETIFASIPPSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVT VKNQG CGSCWAFSATGALEGQMF+KT KL+SLSEQNLVDCS PEGN GC+G
Sbjct: 121 REKGYVTPVKNQGKCGSCWAFSATGALEGQMFQKTGKLVSLSEQNLVDCSQPEGNRGCHG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQ 782
G +DNAFQY+ D GGLDSEESYPY G G+C Y P +SAAN+TG+VD+P + K L +
Sbjct: 181 GFIDNAFQYVLDVGGLDSEESYPYTGLVGTCLYNPNNSAANETGFVDLPKQEKALMKAVA 240
Query: 783 LWGPSLLV*MQAMNPS 830
GP + V + A NPS
Sbjct: 241 NLGP-ISVAVDAHNPS 255
Score = 32.3 bits (72), Expect(2) = e-106
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSSE +DH VLVVGYG
Sbjct: 269 CSSESVDHAVLVVGYG 284
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAKT 880
KQEKALMKAVA +GPISV +DA + SFQFY +GIY+E + ++++
Sbjct: 230 KQEKALMKAVANLGPISVAVDAHNPSFQFYKSGIYYEPNCSSES 273
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 214 bits (546), Expect(3) = 3e-66
Identities = 112/228 (49%), Positives = 140/228 (61%), Gaps = 3/228 (1%)
Frame = +3
Query: 75 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAVWEKNMKMIERHN 251
L+ A A A D +LD W WK T+ K Y NEE RR +WEKN+K + HN
Sbjct: 4 LVWALLLCSSAMAHVHRDPTLDHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHN 63
Query: 252 WEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWRE 428
EH G HS+ + MN GDMT+EE M+ + + + + + P S+DWRE
Sbjct: 64 LEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWRE 123
Query: 429 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGG 605
KG VT VK QG CGSCWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG
Sbjct: 124 KGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGG 183
Query: 606 LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
M AFQYI DN G+DSE SYPY DG C+Y ++ AA + Y+++P
Sbjct: 184 FMTEAFQYIIDNNGIDSEASYPYKAMDGKCQYDVKNRAATCSRYIELP 231
Score = 51.6 bits (122), Expect(3) = 3e-66
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
E+AL +AVA GP+SVGIDASH SF Y TG+Y++ S
Sbjct: 235 EEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPS 271
Score = 25.8 bits (55), Expect(3) = 3e-66
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 273 TQNVNHGVLVVGYG 286
>ref|NP_001029607.1| cathepsin K [Bos taurus].
Length = 334
Score = 217 bits (553), Expect(2) = 6e-59
Identities = 109/232 (46%), Positives = 144/232 (62%), Gaps = 4/232 (1%)
Frame = +3
Query: 81 LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAVWEKNMKMIERHNWE 257
L L + S A + LD W WK T+RK Y +E RR +WEKN+K I HN E
Sbjct: 9 LTVLLLPVVSFALYPEEILDTQWELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLE 68
Query: 258 HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 428
G H++ +AMN GDMT+EE + M G + ++ +++ P SVD+R+
Sbjct: 69 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRK 128
Query: 429 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 608
KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 129 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 186
Query: 609 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKR 764
M NAFQY++ N G+DSE++YPY G+D +C Y P AA GY +IP ++
Sbjct: 187 MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEK 238
Score = 29.3 bits (64), Expect(2) = 6e-59
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYGV 915
C+S++L+H VL VGYG+
Sbjct: 274 CNSDNLNHAVLAVGYGI 290
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Frame = +2
Query: 737 RGYSK----QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
RGY + EKAL +AVA VGPISV IDAS SFQFY G+Y++ +
Sbjct: 227 RGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYRKGVYYDEN 273
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 158 bits (399), Expect = 7e-39
Identities = 90/222 (40%), Positives = 123/222 (55%), Gaps = 4/222 (1%)
Frame = +3
Query: 69 PSLLLAAFCLGIAS--AAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAVWEKNMKMI 239
P L A+ LG + AA +SL+ ++ W H+K Y E R + N++ I
Sbjct: 6 PLLCAGAWLLGAPACGAAELAANSLEKFHFQSWMVQHQKKYSSEEYYHRLQAFASNLREI 65
Query: 240 ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 419
HN + H+F M +N F DM+ +E ++ + Q K G+ P S+D
Sbjct: 66 NAHNARN----HTFKMGLNQFSDMSFDELKRKYLWSEPQNCSATKSNYLRGTGPYPPSMD 121
Query: 420 WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 596
WR+KG +VT VKNQG CGSCW FS TGALE + T KL L+EQ LVDC+ N GC
Sbjct: 122 WRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGC 181
Query: 597 NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAA 722
GGL AF+YI+ N G+ E++YPY G+DG CKY+P + A
Sbjct: 182 QGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIA 223
>ref|NP_001068884.1| cathepsin F [Bos taurus].
Length = 460
Score = 115 bits (289), Expect(2) = 2e-27
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 2/203 (0%)
Frame = +3
Query: 165 THRKLYGLNEEGR-RRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 338
T+ + Y EE R +V+ NM ++ R + + F D+T EEFR +
Sbjct: 169 TYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRG---TARYGVTKFSDLTEEEFRTIYL 225
Query: 339 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 518
N + + + P DWR KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 226 NPLLKDAPGRNMRPAQPVTDVPPPQWDWRNKGAVTNVKDQGMCGSCWAFSVTGNVEGQWF 285
Query: 519 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 698
K L+SLSEQ L+DC + ++ C GGL NA+ I+ GGL++E+ Y Y G+ +C
Sbjct: 286 LKRGTLLSLSEQELLDCD--KTDKACLGGLPSNAYSAIRTLGGLETEDDYSYRGRLQTCS 343
Query: 699 YKPQSSAANDTGYVDIPSKRKRL 767
+ + + V++ ++L
Sbjct: 344 FSAEKAKVYINDSVELSKNEQKL 366
Score = 25.0 bits (53), Expect(2) = 2e-27
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS +DH VL+VGYG
Sbjct: 400 CSPWLIDHAVLLVGYG 415
>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
Length = 384
Score = 79.7 bits (195), Expect(2) = 6e-16
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +3
Query: 405 PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 584
P DWR+K VT V+NQ CG CWAFS GA+E K L LS Q ++DCS+
Sbjct: 172 PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 229
Query: 585 NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPS 752
N GCNGG +A ++ K L + YP+ ++G C+Y S S ++ GY D
Sbjct: 230 NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 289
Query: 753 KRKRL*RPWQLWGPSLLV 806
+ ++ GP ++V
Sbjct: 290 QEDKMAEALLALGPLIVV 307
Score = 22.7 bits (47), Expect(2) = 6e-16
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 832 VLQHRHLF*TQCSSEDLDHGVLVVGY 909
++QH CSS + +H VLV G+
Sbjct: 320 IIQHH------CSSGEANHAVLVTGF 339
>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
Length = 375
Score = 79.7 bits (195), Expect(2) = 6e-16
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +3
Query: 405 PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 584
P DWR+K VT V+NQ CG CWAFS GA+E K L LS Q ++DCS+
Sbjct: 163 PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 220
Query: 585 NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPS 752
N GCNGG +A ++ K L + YP+ ++G C+Y S S ++ GY D
Sbjct: 221 NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 280
Query: 753 KRKRL*RPWQLWGPSLLV 806
+ ++ GP ++V
Sbjct: 281 QEDKMAEALLALGPLIVV 298
Score = 22.7 bits (47), Expect(2) = 6e-16
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 832 VLQHRHLF*TQCSSEDLDHGVLVVGY 909
++QH CSS + +H VLV G+
Sbjct: 311 IIQHH------CSSGEANHAVLVTGF 330
>ref|NP_001103540.1| cathepsin W [Bos taurus].
Length = 272
Score = 81.3 bits (199), Expect = 1e-15
Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Frame = +3
Query: 192 EEGRRRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG 371
E RR ++ +N+ +R E G F + F D+T EEF + + G Q G
Sbjct: 58 EYARRLDIFAQNLAKAQRLQ-EEDLGTAEF--GVTQFSDLTEEEFVQ-LYGSQVAGEALG 113
Query: 372 ---KVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS 542
KV + P + DWR+ G ++ V++Q +C CWA +A G +E K +
Sbjct: 114 VSRKVGSEEWGESEPQTCDWRKVGTISPVRDQRNCNCCWAMAAAGNIEALWAIKFRHFVE 173
Query: 543 LSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPY--FGKDGSC---KYK 704
+S Q L+DC GC GG + +AF + +N GL SE+ YP+ GK C KYK
Sbjct: 174 VSVQQLLDCD--RCGNGCRGGFVWDAFLTVLNNSGLASEKDYPFNGSGKTHRCLAKKYK 230
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 64.7 bits (156), Expect = 1e-10
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = +3
Query: 405 PHSVDWREK---GYVTAVKNQGHCGSCWAFSATGALEG--QMFRKTSKLISLSEQNLVDC 569
P S DWR +VT V+NQG CGSC++F++ G +E ++ ++ LS Q +V C
Sbjct: 232 PTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 570 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYK 704
S + +GC GG + GL E+ +PY G D C+ K
Sbjct: 292 S--QYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLK 334
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,065,934
Number of extensions: 1020180
Number of successful extensions: 3113
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3097
Number of HSP's successfully gapped: 22
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 395 e-114
Alignment gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma... 344 e-105
Alignment gi|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (C... 310 1e-84
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 213 3e-64
Alignment gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari... 218 5e-59
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 145 6e-37
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 116 1e-27
Alignment gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca... 82 2e-16
Alignment gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein... 72 7e-13
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 62 6e-10
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 395 bits (1015), Expect(2) = e-114
Identities = 187/245 (76%), Positives = 207/245 (84%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNPSL L A CLGIASAAP+ D SL+A WY+WKATHR+LYG+NEEG RRAVWEKNMKMIE
Sbjct: 1 MNPSLFLTALCLGIASAAPKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ QGKH FTMAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F + A P SVDW
Sbjct: 61 LHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFAEIPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS +GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPSKRKRL*RPW 779
GLMDNAF+Y+KDNGGLDSEESYPY G+D +C YKP+ SAANDTG+VD+P + K L +
Sbjct: 181 GLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATLGP 245
Score = 37.0 bits (84), Expect(2) = e-114
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYG 912
F CSS+DLDHGVLVVGYG
Sbjct: 266 FDPDCSSKDLDHGVLVVGYG 285
Score = 64.7 bits (156), Expect = 1e-10
Identities = 29/43 (67%), Positives = 37/43 (86%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
++EKALMKAVAT+GPISV IDA H+SFQFY +GIYF+ ++K
Sbjct: 231 QREKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSK 273
>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted
protein) (MEP) [Canis familiaris].
Length = 333
Score = 344 bits (883), Expect(3) = e-105
Identities = 160/225 (71%), Positives = 185/225 (82%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M+PSL LAA CLGIASAAP+ DHSLDA W +WK H KLY +EEG RR VWE+NM+MIE
Sbjct: 1 MHPSLFLAALCLGIASAAPQQDHSLDAHWSQWKEAHGKLYDKDEEGWRRTVWERNMEMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
+HN E+ QG+HSFT+AMNAFGDMTNEEF++ +N F+ QKHKKGKVF A P SVDW
Sbjct: 61 QHNQEYSQGEHSFTLAMNAFGDMTNEEFKQVLNDFKIQKHKKGKVFPAPLFAEVPSSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
RE+GYVT VK+QG C CWAFSATGALEGQMFRKT KL+SLSEQNLVDCSW +GN GCNG
Sbjct: 121 REQGYVTPVKDQGQCLGCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSWSQGNRGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY 737
GLM+ AFQY+KDNGGLDSEESYPY ++ CKY+P+ SAAN T +
Sbjct: 181 GLMEYAFQYVKDNGGLDSEESYPYLARNEPCKYRPEKSAANVTAF 225
Score = 49.3 bits (116), Expect(3) = e-105
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+E LM VATVGP+S +D+S +SFQFY GIY++ + K
Sbjct: 231 EEDGLMTTVATVGPVSAAVDSSPQSFQFYKKGIYYDPKCSNK 272
Score = 30.0 bits (66), Expect(3) = e-105
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 862 QCSSEDLDHGVLVVGYG 912
+CS++ L+HGVLVVGYG
Sbjct: 268 KCSNKLLNHGVLVVGYG 284
>ref|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (Cathepsin V)
(Cathepsin U) [Canis familiaris].
Length = 289
Score = 310 bits (794), Expect = 1e-84
Identities = 153/209 (73%), Positives = 168/209 (80%), Gaps = 1/209 (0%)
Frame = +3
Query: 99 GIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIERHNWEHRQGKHS 278
GI SAAP+ D SL+A WY+WKA HR LY +NEEG RRAVWEKNMKMIE HN E+ QGKH
Sbjct: 10 GIVSAAPKLDQSLNAQWYQWKAMHR-LYAMNEEGWRRAVWEKNMKMIELHNREYSQGKHG 68
Query: 279 FTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 458
FTMAMNAFG MTNEEFR+ MNGFQNQKHKKGKVF + A P SVDWREKGYVT VKNQ
Sbjct: 69 FTMAMNAFGYMTNEEFRQVMNGFQNQKHKKGKVFQEPLFAEIPKSVDWREKGYVTPVKNQ 128
Query: 459 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKD 638
GHCGSCWAFSATG L+GQMF+KT KL NLVDC +GN+GCNGGLMDNAFQY+KD
Sbjct: 129 GHCGSCWAFSATGDLKGQMFQKTGKL------NLVDCYQAQGNKGCNGGLMDNAFQYVKD 182
Query: 639 NGGLDSEESYPYFGKD-GSCKYKPQSSAA 722
NGGLDSEE Y Y G+D + YKP+ SAA
Sbjct: 183 NGGLDSEECYLYLGRDTDTYNYKPECSAA 211
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 213 bits (541), Expect(3) = 3e-64
Identities = 109/218 (50%), Positives = 134/218 (61%), Gaps = 3/218 (1%)
Frame = +3
Query: 105 ASAAPRHDHSLDADWYKWKATHRKLYGL-NEEGRRRAVWEKNMKMIERHNWEHRQGKHSF 281
A A D +LD W WK T+ K Y NEE RR +WEKN+K + HN EH G HS+
Sbjct: 14 AVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 282 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 458
+ MN GDMT EE M + + ++ + + P SVDWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQ 133
Query: 459 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 635
G CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI
Sbjct: 134 GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193
Query: 636 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
DN G+DSE SYPY +G C+Y + AA + Y ++P
Sbjct: 194 DNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELP 231
Score = 47.0 bits (110), Expect(3) = 3e-64
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
E AL +AVA GP+SV IDASH SF Y +G+Y+E S
Sbjct: 235 EDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPS 271
Score = 25.8 bits (55), Expect(3) = 3e-64
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 273 TQNVNHGVLVVGYG 286
>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
Length = 330
Score = 218 bits (554), Expect(2) = 5e-59
Identities = 110/227 (48%), Positives = 144/227 (63%), Gaps = 4/227 (1%)
Frame = +3
Query: 96 LGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAVWEKNMKMIERHNWEHRQGK 272
L +AS A + LD W WK T+RK Y +E RR +WEKN+K I HN E G
Sbjct: 10 LPMASFALYPEEILDTQWDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGV 69
Query: 273 HSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWREKGYVT 443
H++ +AMN GDMT+EE + M G + + +++ + P SVD+R+KGYVT
Sbjct: 70 HTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKGYVT 129
Query: 444 AVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAF 623
VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG M NAF
Sbjct: 130 PVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGYMTNAF 187
Query: 624 QYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKR 764
QY++ N G+DSE++YPY G+D SC Y P AA GY +IP ++
Sbjct: 188 QYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 234
Score = 29.3 bits (64), Expect(2) = 5e-59
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYGV 915
C+S++L+H VL VGYG+
Sbjct: 270 CNSDNLNHAVLAVGYGI 286
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Frame = +2
Query: 737 RGYSK----QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
RGY + EKAL +AVA VGPISV IDAS SFQFYS G+Y++ +
Sbjct: 223 RGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDEN 269
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 145 bits (367), Expect(3) = 6e-37
Identities = 81/187 (43%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Frame = +3
Query: 168 HRKLYGLNEEGRRRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF 347
H+K Y E +R + N + I HN G H+F M +N F DM E +
Sbjct: 10 HQKKYSSEEYLQRLQTFVGNWRKINAHN----AGNHTFKMGLNQFSDMNFAEIKHKYLWS 65
Query: 348 QNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRK 524
+ Q K G+ P VDWR+KG +V+ VKNQG CGSCW FS TGALE + K
Sbjct: 66 EPQNCSATKGNYLRGTGPYPPFVDWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIAIK 125
Query: 525 TSKLISLSEQNLVDCSWPEGNEGCNG-GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKY 701
+ KL+SL+EQ LVDC+ N GC G G AF+YI+ N G+ E+SYPY G+DG CKY
Sbjct: 126 SGKLLSLAEQQLVDCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKY 185
Query: 702 KPQSSAA 722
+P + A
Sbjct: 186 QPSKAIA 192
Score = 26.6 bits (57), Expect(3) = 6e-37
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIY 853
E+A+++AVA P+S + + + F Y GIY
Sbjct: 205 EQAMVEAVALYNPVSFAFEVTSD-FMMYRKGIY 236
Score = 21.2 bits (43), Expect(3) = 6e-37
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +1
Query: 859 TQC--SSEDLDHGVLVVGYG 912
T C + + ++H VL VGYG
Sbjct: 239 TSCHKTPDKVNHAVLAVGYG 258
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 116 bits (291), Expect(2) = 1e-27
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 3/204 (1%)
Frame = +3
Query: 165 THRKLYGLNEEGR-RRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 341
T+ + Y EE R +V+ NM ++ R + + F D+T EEFR
Sbjct: 150 TYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRG---TAQYGITKFSDLTEEEFRTIYL 206
Query: 342 G--FQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 515
+ + KK ++ P DWR KG VT VK+QG CGSCWAFS TG +EGQ
Sbjct: 207 NPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 266
Query: 516 FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 695
F K L+SLSEQ L+DC + ++ C GGL NA+ I GGL++E+ Y Y G +C
Sbjct: 267 FLKEGTLLSLSEQELLDCD--KVDKACLGGLPSNAYSAIMTLGGLETEDDYSYQGHLQAC 324
Query: 696 KYKPQSSAANDTGYVDIPSKRKRL 767
+ + + +++ ++L
Sbjct: 325 SFSAKKARVYINDSMELSQNEQKL 348
Score = 25.0 bits (53), Expect(2) = 1e-27
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS +DH VL+VGYG
Sbjct: 382 CSPWLIDHAVLLVGYG 397
>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
Length = 518
Score = 82.0 bits (201), Expect(2) = 2e-16
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 6/183 (3%)
Frame = +3
Query: 276 SFTMAMNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAV 449
S +N F ++ EEF+ + + + +V + P DWR+K VT V
Sbjct: 259 SAVYGINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVRTSIRNVSLPLRFDWRDKRVVTQV 318
Query: 450 KNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQY 629
+NQ CG CWAFS GA+E K L +S Q ++DCS+ N GC+GG NA +
Sbjct: 319 RNQQTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDCSY--NNYGCSGGSTLNALNW 376
Query: 630 I-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPSKRKRL*RPWQLWGPS 797
+ K L + YP+ ++G C Y S S + GY D + + + +GP
Sbjct: 377 LNKTQVKLVRDSEYPFKAQNGLCHYFSDSYSGFSIRGYSAYDFSDQEDEMAKVLLTFGPL 436
Query: 798 LLV 806
++V
Sbjct: 437 VVV 439
Score = 22.3 bits (46), Expect(2) = 2e-16
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 832 VLQHRHLF*TQCSSEDLDHGVLVVGY 909
++QH CSS + +H VL+ G+
Sbjct: 452 IIQHH------CSSGEANHAVLITGF 471
>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
Length = 374
Score = 72.0 bits (175), Expect = 7e-13
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Frame = +3
Query: 300 FGDMTNEEFRKTMNGFQNQKHKKG-------KVFLDAGSALTPHSVDWRE-KGYVTAVKN 455
F D+T EEF + F + G KV + P + DWR+ G ++ +K
Sbjct: 91 FSDLTEEEFGQ----FYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQ 146
Query: 456 QGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIK 635
QG+C CWA +A G +E + + + +S Q L+DC +GC GG +AF +
Sbjct: 147 QGNCRCCWAMAAAGNIEALWGIRYHQPVEVSVQELLDCG--RCGDGCKGGFTWDAFITVL 204
Query: 636 DNGGLDSEESYPYFG 680
+N GL S + YP+ G
Sbjct: 205 NNSGLASAKDYPFLG 219
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 62.4 bits (150), Expect = 6e-10
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Frame = +3
Query: 405 PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEG--QMFRKTSKLISLSEQNLVDC 569
P S DWR +V+ V+NQ CGSC+AF++T LE ++ ++ LS Q +V C
Sbjct: 229 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSC 288
Query: 570 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 698
S + +GC GG + GL E +PY G D CK
Sbjct: 289 S--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCK 329
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,605,355
Number of extensions: 1040083
Number of successful extensions: 3120
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 26
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens]. 380 e-110
Alignment gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens]. 380 e-110
Alignment gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens]. 360 e-103
Alignment gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens]. 360 e-103
Alignment gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie... 213 5e-64
Alignment gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens]. 218 3e-59
Alignment gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa... 161 8e-49
Alignment gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens]. 164 3e-43
Alignment gi|NP_003784.2| cathepsin F precursor [Homo sapiens]. 120 1e-28
Alignment gi|NP_001325.1| cathepsin O preproprotein [Homo sapiens]. 84 2e-19
>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 380 bits (977), Expect(2) = e-110
Identities = 181/244 (74%), Positives = 202/244 (82%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNP+L+LAAFCLGIASA DHSL+A W KWKA H +LYG+NEEG RRAVWEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF + P SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQ 782
GLMD AFQY++DNGGLDSEESYPY + SCKY P+ S ANDTG+VDIP + K L +
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240
Query: 783 LWGP 794
GP
Sbjct: 241 TVGP 244
Score = 37.7 bits (86), Expect(2) = e-110
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYG 912
F CSSED+DHGVLVVGYG
Sbjct: 265 FEPDCSSEDMDHGVLVVGYG 284
Score = 66.2 bits (160), Expect = 4e-11
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
KQEKALMKAVATVGPISV IDA HESF FY GIYFE +++
Sbjct: 230 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE 272
>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 380 bits (977), Expect(2) = e-110
Identities = 181/244 (74%), Positives = 202/244 (82%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNP+L+LAAFCLGIASA DHSL+A W KWKA H +LYG+NEEG RRAVWEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF + P SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQ 782
GLMD AFQY++DNGGLDSEESYPY + SCKY P+ S ANDTG+VDIP + K L +
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240
Query: 783 LWGP 794
GP
Sbjct: 241 TVGP 244
Score = 37.7 bits (86), Expect(2) = e-110
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYG 912
F CSSED+DHGVLVVGYG
Sbjct: 265 FEPDCSSEDMDHGVLVVGYG 284
Score = 66.2 bits (160), Expect = 4e-11
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
KQEKALMKAVATVGPISV IDA HESF FY GIYFE +++
Sbjct: 230 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE 272
>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 360 bits (923), Expect(2) = e-103
Identities = 174/245 (71%), Positives = 195/245 (79%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MN SL+LAAFCLGIASA P+ D +LD WY+WKATHR+LYG NEEG RRAVWEKNMKMIE
Sbjct: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ QGKH FTMAMNAFGDMTNEEFR+ M F+NQK +KGKVF + P SVDW
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
R+KGYVT VKNQ CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPSKRKRL*RPW 779
G M AFQY+K+NGGLDSEESYPY D CKY+P++S ANDTG+ V P K K L +
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATVGP 245
Score = 35.0 bits (79), Expect(2) = e-103
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYG 912
F CSS++LDHGVLVVGYG
Sbjct: 266 FEPDCSSKNLDHGVLVVGYG 285
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+EKALMKAVATVGPISV +DA H SFQFY +GIYFE ++K
Sbjct: 232 KEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSK 273
>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 360 bits (923), Expect(2) = e-103
Identities = 174/245 (71%), Positives = 195/245 (79%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MN SL+LAAFCLGIASA P+ D +LD WY+WKATHR+LYG NEEG RRAVWEKNMKMIE
Sbjct: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ QGKH FTMAMNAFGDMTNEEFR+ M F+NQK +KGKVF + P SVDW
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
R+KGYVT VKNQ CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPSKRKRL*RPW 779
G M AFQY+K+NGGLDSEESYPY D CKY+P++S ANDTG+ V P K K L +
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATVGP 245
Score = 35.0 bits (79), Expect(2) = e-103
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYG 912
F CSS++LDHGVLVVGYG
Sbjct: 266 FEPDCSSKNLDHGVLVVGYG 285
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+EKALMKAVATVGPISV +DA H SFQFY +GIYFE ++K
Sbjct: 232 KEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSK 273
>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
Length = 331
Score = 213 bits (541), Expect(3) = 5e-64
Identities = 109/222 (49%), Positives = 139/222 (62%), Gaps = 3/222 (1%)
Frame = +3
Query: 105 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAVWEKNMKMIERHNWEHRQGKHSF 281
A A D +LD W+ WK T+ K Y NEE RR +WEKN+K + HN EH G HS+
Sbjct: 14 AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 282 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 458
+ MN GDMT+EE M+ + + ++ + + + P SVDWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQ 133
Query: 459 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 635
G CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI
Sbjct: 134 GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193
Query: 636 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRK 761
DN G+DS+ SYPY D C+Y + AA + Y ++P R+
Sbjct: 194 DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGRE 235
Score = 46.2 bits (108), Expect(3) = 5e-64
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
+E L +AVA GP+SVG+DA H SF Y +G+Y+E S
Sbjct: 234 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS 271
Score = 25.8 bits (55), Expect(3) = 5e-64
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 273 TQNVNHGVLVVGYG 286
>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
Length = 329
Score = 218 bits (556), Expect(2) = 3e-59
Identities = 110/232 (47%), Positives = 143/232 (61%), Gaps = 4/232 (1%)
Frame = +3
Query: 81 LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAVWEKNMKMIERHNWE 257
L L + S A + LD W WK THRK Y +E RR +WEKN+K I HN E
Sbjct: 4 LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLE 63
Query: 258 HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 428
G H++ +AMN GDMT+EE + M G + + +++ P SVD+R+
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK 123
Query: 429 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 608
KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 181
Query: 609 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKR 764
M NAFQY++ N G+DSE++YPY G++ SC Y P AA GY +IP ++
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 233
Score = 29.3 bits (64), Expect(2) = 3e-59
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYGV 915
C+S++L+H VL VGYG+
Sbjct: 269 CNSDNLNHAVLAVGYGI 285
Score = 55.1 bits (131), Expect = 9e-08
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Frame = +2
Query: 737 RGYSK----QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
RGY + EKAL +AVA VGP+SV IDAS SFQFYS G+Y++ S
Sbjct: 222 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES 268
>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
Length = 281
Score = 161 bits (408), Expect(3) = 8e-49
Identities = 91/221 (41%), Positives = 112/221 (50%), Gaps = 2/221 (0%)
Frame = +3
Query: 105 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAVWEKNMKMIERHNWEHRQGKHSF 281
A A D +LD W+ WK T+ K Y NEE RR +WEKN+K + HN EH G HS+
Sbjct: 14 AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 282 TMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQG 461
+ MN GDM G
Sbjct: 74 DLGMNHLGDM-------------------------------------------------G 84
Query: 462 HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIKD 638
CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI D
Sbjct: 85 SCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 144
Query: 639 NGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRK 761
N G+DS+ SYPY D C+Y + AA + Y ++P R+
Sbjct: 145 NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGRE 185
Score = 46.2 bits (108), Expect(3) = 8e-49
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
+E L +AVA GP+SVG+DA H SF Y +G+Y+E S
Sbjct: 184 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS 221
Score = 25.8 bits (55), Expect(3) = 8e-49
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 223 TQNVNHGVLVVGYG 236
>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
Length = 335
Score = 164 bits (415), Expect(3) = 3e-43
Identities = 93/217 (42%), Positives = 121/217 (55%), Gaps = 4/217 (1%)
Frame = +3
Query: 69 PSLLLAAFCLGI--ASAAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAVWEKNMKMI 239
P L A+ LG+ AA +SL+ +K W + HRK Y E R + N + I
Sbjct: 6 PLLCAGAWLLGVPVCGAAELCVNSLEKFHFKSWMSKHRKTYSTEEYHHRLQTFASNWRKI 65
Query: 240 ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 419
HN G H+F MA+N F DM+ E + + Q K G+ P SVD
Sbjct: 66 NAHN----NGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNYLRGTGPYPPSVD 121
Query: 420 WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 596
WR+KG +V+ VKNQG CGSCW FS TGALE + T K++SL+EQ LVDC+ N GC
Sbjct: 122 WRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGC 181
Query: 597 NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKP 707
GGL AF+YI N G+ E++YPY GKDG CK++P
Sbjct: 182 QGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQP 218
Score = 29.3 bits (64), Expect(3) = 3e-43
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIY 853
E+A+++AVA P+S + + + F Y TGIY
Sbjct: 236 EEAMVEAVALYNPVSFAFEVT-QDFMMYRTGIY 267
Score = 21.2 bits (43), Expect(3) = 3e-43
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +1
Query: 859 TQC--SSEDLDHGVLVVGYG 912
T C + + ++H VL VGYG
Sbjct: 270 TSCHKTPDKVNHAVLAVGYG 289
>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
Length = 484
Score = 120 bits (301), Expect(2) = 1e-28
Identities = 76/204 (37%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
Frame = +3
Query: 165 THRKLYGLNEEGR-RRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 341
T+ + Y EE R R +V+ NM ++ R + + F D+T EEFR
Sbjct: 193 TYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRG---TAQYGVTKFSDLTEEEFRTIYL 249
Query: 342 GFQNQKHKKGKVFLDAGSA--LTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 515
+K + G A S L P DWR KG VT VK+QG CGSCWAFS TG +EGQ
Sbjct: 250 NTLLRK-EPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 308
Query: 516 FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 695
F L+SLSEQ L+DC + ++ C GGL NA+ IK+ GGL++E+ Y Y G SC
Sbjct: 309 FLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC 366
Query: 696 KYKPQSSAANDTGYVDIPSKRKRL 767
+ + + V++ ++L
Sbjct: 367 NFSAEKAKVYINDSVELSQNEQKL 390
Score = 25.0 bits (53), Expect(2) = 1e-28
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS +DH VL+VGYG
Sbjct: 424 CSPWLIDHAVLLVGYG 439
>ref|NP_001325.1| cathepsin O preproprotein [Homo sapiens].
Length = 321
Score = 84.3 bits (207), Expect(2) = 2e-19
Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 291 MNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAVKNQGH 464
+N F + EEF+ + K + +V + + P DWR+K VT V+NQ
Sbjct: 69 INQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQM 128
Query: 465 CGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KDN 641
CG CWAFS GA+E K L LS Q ++DCS+ N GCNGG NA ++ K
Sbjct: 129 CGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSY--NNYGCNGGSTLNALNWLNKMQ 186
Query: 642 GGLDSEESYPYFGKDGSCKY 701
L + YP+ ++G C Y
Sbjct: 187 VKLVKDSEYPFKAQNGLCHY 206
Score = 29.6 bits (65), Expect(2) = 2e-19
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 743 YSKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+S QE + KA+ T GP+ V +DA S+Q Y GI H ++ +
Sbjct: 224 FSDQEDEMAKALLTFGPLVVIVDA--VSWQDYLGGIIQHHCSSGE 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,036,379
Number of extensions: 1032967
Number of successful extensions: 3108
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3085
Number of HSP's successfully gapped: 38
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus]. 349 e-99
Alignment gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus]. 309 4e-96
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 306 5e-86
Alignment gi|NP_071721.2| cathepsin M precursor [Mus musculus]. 259 6e-80
Alignment gi|NP_067420.1| cathepsin 6 [Mus musculus]. 260 1e-78
Alignment gi|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus]. 253 2e-78
Alignment gi|NP_064680.1| cathepsin R precursor [Mus musculus]. 248 3e-78
Alignment gi|NP_835199.1| testin-2 precursor [Mus musculus]. 283 5e-78
Alignment gi|NP_036137.1| cathepsin J [Mus musculus]. 243 4e-74
Alignment gi|NP_081182.2| cathepsin 3 precursor [Mus musculus]. 239 2e-71
>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
Length = 334
Score = 349 bits (895), Expect(2) = e-99
Identities = 166/256 (64%), Positives = 199/256 (77%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MN LLLA CLG A A P+ D + A+W++WK+THR+LYG NEE RRA+WEKNM+MI+
Sbjct: 1 MNLLLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQ 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ G+H F+M MNAFGDMTNEEFR+ +NG+++QKHKKG++F + P SVDW
Sbjct: 61 LHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLKIPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKG VT VKNQG CGSCWAFSA+G LEGQMF KT KLISLSEQNLVDCS +GN+GCNG
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQ 782
GLMD AFQYIK+NGGLDSEESYPY KDGSCKY+ + + ANDTG+VDIP + K L +
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQQEKALMKAVA 240
Query: 783 LWGPSLLV*MQAMNPS 830
GP + V M A +PS
Sbjct: 241 TVGP-ISVAMDASHPS 255
Score = 33.5 bits (75), Expect(2) = e-99
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS++LDHGVL+VGYG
Sbjct: 269 CSSKNLDHGVLLVGYG 284
Score = 66.2 bits (160), Expect = 3e-11
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+QEKALMKAVATVGPISV +DASH S QFYS+GIY+E + ++K
Sbjct: 230 QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSK 272
>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
Length = 330
Score = 309 bits (791), Expect(3) = 4e-96
Identities = 141/229 (61%), Positives = 170/229 (74%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M P LLA CLG+ SAAP HD SLDA W +WK HRK Y +NEE ++RAVWE NMKMI
Sbjct: 1 MTPVFLLATLCLGVVSAAPAHDPSLDAVWEEWKTKHRKTYNMNEEAQKRAVWENNMKMIG 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN ++ +GKH F + MNAFGD+TN EFR+ M GFQ+ HK+ +F + P SVDW
Sbjct: 61 LHNEDYLKGKHGFNLEMNAFGDLTNTEFRELMTGFQSMGHKEMTIFQEPLLGDVPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
R+ GYVT VK+QGHCGSCWAFSA G+LEGQ+FRKT KL+ LSEQNL+DCSW GN GCNG
Sbjct: 121 RDHGYVTPVKDQGHCGSCWAFSAVGSLEGQIFRKTGKLVPLSEQNLMDCSWSYGNVGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
GLM+ AFQY+K+N GLD+ ESY Y DG C+Y P+ SA N TG+V +P
Sbjct: 181 GLMELAFQYVKENRGLDTRESYAYEAWDGPCRYDPKYSAVNITGFVKVP 229
Score = 51.6 bits (122), Expect(3) = 4e-96
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFE 859
E ALM AVA+VGP+SVGID H SF+FY G Y+E
Sbjct: 232 EDALMNAVASVGPVSVGIDTHHHSFRFYRGGTYYE 266
Score = 31.6 bits (70), Expect(3) = 4e-96
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS +LDH VLVVGYG
Sbjct: 269 CSSTNLDHAVLVVGYG 284
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 306 bits (785), Expect(2) = 5e-86
Identities = 144/245 (58%), Positives = 179/245 (73%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M P LLA CLG+ SAAP H+ SLDA W +WK H+K Y +N+EG++RAVWE N KMI+
Sbjct: 1 MTPVFLLATLCLGVVSAAPAHNPSLDAVWEEWKTKHKKTYNMNDEGQKRAVWENNKKMID 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG-KVFLDAGSALTPHSVD 419
HN ++ +GKH F++ MNAFGD+TN EFR+ M GFQ QK K KVF + P SVD
Sbjct: 61 LHNEDYLKGKHGFSLEMNAFGDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPKSVD 120
Query: 420 WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 599
WR+ GYVT VK+QG CGSCWAFSA G+LEGQMFRKT KL+ LS QNLVDCSW +GN+GC+
Sbjct: 121 WRDHGYVTPVKDQGSCGSCWAFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGNQGCD 180
Query: 600 GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPW 779
GGL D AFQY+KDNGGLD+ SYPY +G+C+Y P++SAA TG+V++ S L +
Sbjct: 181 GGLPDLAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKNSAATVTGFVNVQSSEDALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATVGP 245
Score = 30.0 bits (66), Expect(2) = 5e-86
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS LDH VLVVGYG
Sbjct: 270 CSSTVLDHAVLVVGYG 285
Score = 59.3 bits (142), Expect = 4e-09
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFE 859
E ALMKAVATVGPISVGID H+SFQFY G+Y+E
Sbjct: 233 EDALMKAVATVGPISVGIDTKHKSFQFYKEGMYYE 267
>ref|NP_071721.2| cathepsin M precursor [Mus musculus].
Length = 333
Score = 259 bits (662), Expect(3) = 6e-80
Identities = 127/235 (54%), Positives = 155/235 (65%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M ++ LA CLG+A +P D LD +W KWK + K Y L EEG++RAVWE NMK I+
Sbjct: 1 MTSAIFLAMLCLGMALPSPAPDPILDVEWQKWKIKYGKAYSLEEEGQKRAVWEDNMKKIK 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ GKH FTM MNAFGDMT EEFRK M KKGK S P ++W
Sbjct: 61 LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFINW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
+++GYVT V+ QG C SCWAFS TGA+EGQMFRKT +LI LS QNLVDCS P+GN GC
Sbjct: 121 KKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYL 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL 767
G A Y+ +NGGL+SE +YPY KDGSC+Y P++S AN TG+ +P L
Sbjct: 181 GNTYLALHYVMENGGLESEATYPYEEKDGSCRYSPENSTANITGFEFVPKNEDAL 235
Score = 54.3 bits (129), Expect(3) = 6e-80
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAA 874
K E ALM AVA++GPISV IDA H SF FY GIY+E + ++
Sbjct: 230 KNEDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSS 271
Score = 24.3 bits (51), Expect(3) = 6e-80
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS + H +L+VGYG
Sbjct: 269 CSSSVVTHSMLLVGYG 284
>ref|NP_067420.1| cathepsin 6 [Mus musculus].
Length = 334
Score = 260 bits (664), Expect(3) = 1e-78
Identities = 120/230 (52%), Positives = 161/230 (70%), Gaps = 1/230 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M+P+L LA CLG+ S A D +L+A+W+ WK + K Y + EEG RRA+WE+NM+MI+
Sbjct: 1 MSPTLFLAILCLGVGSGALALDPNLNAEWHDWKKQYEKSYTMEEEGLRRAIWEENMRMIK 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLD-AGSALTPHSVD 419
HNWE+ GK++FT+ MN FGD+T EE RK MN F HKK K+ A + P VD
Sbjct: 61 LHNWENSLGKNNFTLKMNEFGDLTPEELRKMMNNFPIWSHKKRKIIRKRAVGDVLPKFVD 120
Query: 420 WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 599
WR+KGYVT V+ Q C SCWAF+ GA+EGQMF+KT KL LS QNLVDC+ +GN+GC
Sbjct: 121 WRKKGYVTRVRRQKFCNSCWAFAVNGAIEGQMFKKTGKLTPLSVQNLVDCTKTQGNDGCQ 180
Query: 600 GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
G A++Y+ +NGGL++E +YPY GK+G C+Y P++S A TG+V +P
Sbjct: 181 WGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCRYNPKNSKAEITGFVSLP 230
Score = 46.2 bits (108), Expect(3) = 1e-78
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAKT 880
+ E LM+AVAT+GPIS +DAS F FY GIY + + + T
Sbjct: 231 ESEDILMEAVATIGPISAAVDASFNRFSFYDGGIYHQPNCSNNT 274
Score = 26.9 bits (58), Expect(3) = 1e-78
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS+ ++H VLVVGYG
Sbjct: 270 CSNNTVNHAVLVVGYG 285
>ref|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus].
Length = 333
Score = 253 bits (646), Expect(3) = 2e-78
Identities = 124/235 (52%), Positives = 157/235 (66%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M P++ LA L +AS++P D LDA+W KWK H K Y L EE ++RAVWE+NMK I+
Sbjct: 1 MTPAVFLAILWLVMASSSPSPDPILDAEWQKWKIKHGKPYSLEEEEQKRAVWEENMKKIK 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ GKH FTM MNAFGDMT EEFRK M KKGK S P ++W
Sbjct: 61 LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKHLSVNLPKFINW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
+++GYVT V+ QG C SCWA S TGA+EGQMF+KT +LI LS QNLVDCS P+GN GC
Sbjct: 121 KKRGYVTPVRTQGRCNSCWAISVTGAIEGQMFQKTGQLIPLSVQNLVDCSRPQGNRGCYV 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL 767
G A +Y+ +NGGL+SE +YPY K+GSC+Y P++S A+ TG+ +P L
Sbjct: 181 GNTYRALKYVVENGGLESEATYPYEEKEGSCRYNPENSTASITGFDFVPENEDAL 235
Score = 55.1 bits (131), Expect(3) = 2e-78
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAA 874
+ E ALM AVAT+GPISV IDA HESF FY GIY E + ++
Sbjct: 230 ENEDALMNAVATIGPISVAIDARHESFLFYKRGIYHEPNCSS 271
Score = 24.3 bits (51), Expect(3) = 2e-78
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS + H +L+VGYG
Sbjct: 269 CSSSVVTHAMLLVGYG 284
>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
Length = 334
Score = 248 bits (634), Expect(3) = 3e-78
Identities = 122/227 (53%), Positives = 153/227 (67%), Gaps = 2/227 (0%)
Frame = +3
Query: 75 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIERHNW 254
+ +A LG+AS P D SLDA+W WK + K Y L EE +R VWE+ +KMI+ HN
Sbjct: 5 VFIAFLYLGVASGVPVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNR 64
Query: 255 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFL--DAGSALTPHSVDWRE 428
E+ GK+ FTM MN FGD T+EEFRK M H++GK + +AGS L P VDWR+
Sbjct: 65 ENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSIL-PKFVDWRK 123
Query: 429 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 608
KGYVT V+ QG C +CWAF+ TGA+E Q +T KL LS QNLVDCS P+GN GC GG
Sbjct: 124 KGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGD 183
Query: 609 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
NAFQY+ NGGL+SE +YPY GKDG C+Y P++S A TG+V +P
Sbjct: 184 TYNAFQYVLHNGGLESEATYPYEGKDGPCRYNPKNSKAEITGFVSLP 230
Score = 53.1 bits (126), Expect(3) = 3e-78
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAKT 880
+ E LM AVAT+GPI+ GIDASHESF+ Y GIY E + ++ T
Sbjct: 231 QSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDT 274
Score = 30.4 bits (67), Expect(3) = 3e-78
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS+ + HGVLVVGYG
Sbjct: 270 CSSDTVTHGVLVVGYG 285
>ref|NP_835199.1| testin-2 precursor [Mus musculus].
Length = 333
Score = 283 bits (724), Expect(2) = 5e-78
Identities = 137/240 (57%), Positives = 161/240 (67%)
Frame = +3
Query: 75 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIERHNW 254
L LA CL I S AP D SLD W +W+ H K Y +NEE RRAVWEKN KMIE HNW
Sbjct: 5 LFLAILCLEIDSTAPTLDPSLDVQWNEWRTKHGKAYNVNEERLRRAVWEKNFKMIELHNW 64
Query: 255 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG 434
E+ +GKH FTM MNAFGD+TN EF K M GF+ QK K+ VF D P VDWR G
Sbjct: 65 EYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLG 124
Query: 435 YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMD 614
YVT VKNQG+C S WAFSATG+LEGQMF+KT +L+ LSEQNL+DC C+GG M
Sbjct: 125 YVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQ 184
Query: 615 NAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQLWGP 794
NAFQY+KDNGGL +EESYPY G C+Y ++SAAN +V IP + + L + GP
Sbjct: 185 NAFQYVKDNGGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGP 244
Score = 26.9 bits (58), Expect(2) = 5e-78
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 862 QCSSEDLDHGVLVVGYG 912
QC L+H VLVVGYG
Sbjct: 268 QCKRVHLNHAVLVVGYG 284
Score = 60.8 bits (146), Expect = 1e-09
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +2
Query: 752 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFE 859
+E+ALMKAVA VGPISV +DASH+SFQFY +GIY+E
Sbjct: 231 REEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYE 266
>ref|NP_036137.1| cathepsin J [Mus musculus].
Length = 333
Score = 243 bits (619), Expect(3) = 4e-74
Identities = 118/234 (50%), Positives = 154/234 (65%), Gaps = 5/234 (2%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M P++LL C G+AS A HD LDA+W WK + K Y EE RRAVWE+NM+MI+
Sbjct: 1 MTPTVLLLILCFGVASGAQAHDPKLDAEWKDWKTKYAKSYS-PEEALRRAVWEENMRMIK 59
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF-----QNQKHKKGKVFLDAGSALTP 407
HN E+ GK++FTM MN FGD T+EEFRK+++ H + V + P
Sbjct: 60 LHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGL-----P 114
Query: 408 HSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGN 587
DWRE+GYVT V+NQG CGSCWAF+A GA+EGQMF KT L LS QNL+DCS GN
Sbjct: 115 DYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGN 174
Query: 588 EGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
+GC G AF+Y+ N GL++E +YPY GKDG C+Y+ ++++AN T YV++P
Sbjct: 175 KGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLP 228
Score = 48.9 bits (115), Expect(3) = 4e-74
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAA 874
E L AVA++GP+S IDASH+SF+FY+ GIY+E + ++
Sbjct: 231 ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSS 270
Score = 26.6 bits (57), Expect(3) = 4e-74
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS ++H VLVVGYG
Sbjct: 268 CSSYFVNHAVLVVGYG 283
>ref|NP_081182.2| cathepsin 3 precursor [Mus musculus].
Length = 332
Score = 239 bits (609), Expect(2) = 2e-71
Identities = 119/230 (51%), Positives = 154/230 (66%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M P++ LA L +AS++P D LDA+W KWK + K Y L EEG++RAVWE+NMK I+
Sbjct: 1 MTPAVFLAILWLVMASSSPSPDPILDAEWQKWKIKYGKTYSLEEEGQKRAVWEENMKKIK 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ GKH FTM MNAFGDMT EEFRK M KKGK S P ++W
Sbjct: 61 LHNGENGLGKHGFTMEMNAFGDMTLEEFRKEMIEIPVPTVKKGKSVQKRLSVNLPKFINW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
+++GYVT V+ Q C SCWA S TGA+EGQMFRKT +LI LS QNLVDC GC+
Sbjct: 121 KKRGYVTPVRTQIACNSCWAISVTGAIEGQMFRKTGQLIPLSVQNLVDC---VDGSGCHA 177
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPS 752
G + ++F+Y+ + GGL+SE +YPY K GSC+Y P++S A+ TG+ IP+
Sbjct: 178 GSVLDSFKYLMEKGGLESEATYPYEDKQGSCRYNPENSTASITGFEFIPN 227
Score = 48.9 bits (115), Expect(2) = 2e-71
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFE 859
E LM AVA++GPISV IDA HESF FY GIY+E
Sbjct: 229 EVDLMSAVASLGPISVVIDAWHESFLFYKRGIYYE 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,419,605
Number of extensions: 880259
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2545
Number of HSP's successfully gapped: 64
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa]. 495 e-146
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 397 e-115
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 209 2e-63
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 209 2e-63
Alignment gi|NP_999467.1| cathepsin K precursor [Sus scrofa]. 218 2e-59
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 157 1e-40
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 127 4e-31
Alignment gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]. 86 2e-17
Alignment gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s... 64 4e-13
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 60 2e-09
>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
Length = 332
Score = 495 bits (1275), Expect(2) = e-146
Identities = 232/244 (95%), Positives = 235/244 (96%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRA+WEKNMKMIE
Sbjct: 1 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW
Sbjct: 61 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG
Sbjct: 121 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKRL*RPWQ 782
GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP + K L +
Sbjct: 181 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 240
Query: 783 LWGP 794
GP
Sbjct: 241 TVGP 244
Score = 42.0 bits (97), Expect(2) = e-146
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 853 F*TQCSSEDLDHGVLVVGYGV 915
F QCSSEDLDHGVLVVGYGV
Sbjct: 265 FEPQCSSEDLDHGVLVVGYGV 285
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFE +++
Sbjct: 230 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSE 272
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 397 bits (1021), Expect(2) = e-115
Identities = 188/245 (76%), Positives = 208/245 (84%), Gaps = 1/245 (0%)
Frame = +3
Query: 63 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAVWEKNMKMIE 242
M PSL L A CLGIASAAP+ D +LDADWYKWKATH +LYG+NEEG RRAVWEKNMKMIE
Sbjct: 1 MKPSLFLTALCLGIASAAPKLDQNLDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 243 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 422
HN E+ QGKH F+MAMNAFGDMTNEEFR+ MNGFQNQKHKKGKVF ++ P SVDW
Sbjct: 61 LHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVLEVPKSVDW 120
Query: 423 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 602
REKGYVTAVKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 REKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 603 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPSKRKRL*RPW 779
GLMDNAFQY+KDNGGLD+EESYPY G++ SC YKP+ SAANDTG+VDIP + K L +
Sbjct: 181 GLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAV 240
Query: 780 QLWGP 794
GP
Sbjct: 241 ATVGP 245
Score = 36.6 bits (83), Expect(2) = e-115
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CSS+DLDHGVLVVGYG
Sbjct: 270 CSSKDLDHGVLVVGYG 285
Score = 63.9 bits (154), Expect = 1e-10
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 749 KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
++EKALMKAVATVGPISV IDA H SFQFY +GIY++ ++K
Sbjct: 231 QREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSK 273
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 209 bits (532), Expect(3) = 2e-63
Identities = 109/218 (50%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Frame = +3
Query: 105 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAVWEKNMKMIERHNWEHRQGKHSF 281
A A D +LD W WK T+ K Y NEE RR +WEKN+K + HN EH G HS+
Sbjct: 14 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73
Query: 282 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 458
+ MN GDMT+EE M+ + + + + + P S+DWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133
Query: 459 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 635
G CGSCWAFSA GALE Q+ KT +L+SLS QNLVDCS + N+GCNGG M AFQYI
Sbjct: 134 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193
Query: 636 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
DN G+DSE SYPY DG CKY ++ AA + Y ++P
Sbjct: 194 DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELP 231
Score = 47.0 bits (110), Expect(3) = 2e-63
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
E AL +AVA GP+SV IDA H SF FY +G+Y++ S
Sbjct: 235 EYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYDPS 271
Score = 25.8 bits (55), Expect(3) = 2e-63
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 273 TQNVNHGVLVVGYG 286
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 209 bits (532), Expect(3) = 2e-63
Identities = 109/218 (50%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Frame = +3
Query: 105 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAVWEKNMKMIERHNWEHRQGKHSF 281
A A D +LD W WK T+ K Y NEE RR +WEKN+K + HN EH G HS+
Sbjct: 14 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73
Query: 282 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 458
+ MN GDMT+EE M+ + + + + + P S+DWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133
Query: 459 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 635
G CGSCWAFSA GALE Q+ KT +L+SLS QNLVDCS + N+GCNGG M AFQYI
Sbjct: 134 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193
Query: 636 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 749
DN G+DSE SYPY DG CKY ++ AA + Y ++P
Sbjct: 194 DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELP 231
Score = 47.0 bits (110), Expect(3) = 2e-63
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
E AL +AVA GP+SV IDA H SF FY +G+Y++ S
Sbjct: 235 EYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYDPS 271
Score = 25.8 bits (55), Expect(3) = 2e-63
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +1
Query: 871 SEDLDHGVLVVGYG 912
+++++HGVLVVGYG
Sbjct: 273 TQNVNHGVLVVGYG 286
>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
Length = 330
Score = 218 bits (556), Expect(2) = 2e-59
Identities = 109/233 (46%), Positives = 145/233 (62%), Gaps = 4/233 (1%)
Frame = +3
Query: 78 LLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAVWEKNMKMIERHNW 254
L L + S+A + LD W WK T+RK Y +E RR +WEKN+K I HN
Sbjct: 4 LKVVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNL 63
Query: 255 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWR 425
E G H++ +AMN GDMT+EE + M G + + +++ TP S+D+R
Sbjct: 64 EASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYR 123
Query: 426 EKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGG 605
+KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 124 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGG 181
Query: 606 LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPSKRKR 764
M NAFQY++ N G+DSE++YPY G+D +C Y P AA GY +IP ++
Sbjct: 182 YMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEK 234
Score = 29.3 bits (64), Expect(2) = 2e-59
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYGV 915
C+S++L+H VL VGYG+
Sbjct: 270 CNSDNLNHAVLAVGYGI 286
Score = 53.9 bits (128), Expect = 1e-07
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Frame = +2
Query: 737 RGYSK----QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHS 865
RGY + EKAL +AVA VGP+SV IDAS SFQFYS G+Y++ +
Sbjct: 223 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDEN 269
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 157 bits (398), Expect(3) = 1e-40
Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Frame = +3
Query: 156 WKATHRKLYGLNEEGRRRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT 335
W H+K Y L E R V+ N + I HN G H+F + +N F DM+ +E R
Sbjct: 38 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHN----AGNHTFKLGLNQFSDMSFDEIRHK 93
Query: 336 MNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQ 512
+ Q K G+ P S+DWR+KG +V+ VKNQG CGSCW FS TGALE
Sbjct: 94 YLWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESA 153
Query: 513 MFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGS 692
+ T K++SL+EQ LVDC+ N GC GGL AF+YI+ N G+ E++YPY G+D
Sbjct: 154 VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 213
Query: 693 CKYKPQSSAA 722
CK++P + A
Sbjct: 214 CKFQPDKAIA 223
Score = 26.6 bits (57), Expect(3) = 1e-40
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 755 EKALMKAVATVGPISVGIDASHESFQFYSTGIY 853
E+A+++AVA P+S + +++ F Y GIY
Sbjct: 236 EEAMVEAVALYNPVSFAFEVTND-FLMYRKGIY 267
Score = 21.2 bits (43), Expect(3) = 1e-40
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +1
Query: 859 TQC--SSEDLDHGVLVVGYG 912
T C + + ++H VL VGYG
Sbjct: 270 TSCHKTPDKVNHAVLAVGYG 289
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 127 bits (320), Expect(2) = 4e-31
Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 2/203 (0%)
Frame = +3
Query: 165 THRKLYGLNEEGR-RRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 338
T+ + Y EE R R +V+ NM ++ + + F D+T EEFR +
Sbjct: 199 TYNRTYDTKEEARWRMSVFANNMVRAQKIQ---ALDTGTARYGVTKFSDLTEEEFRTIYL 255
Query: 339 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 518
N ++ + + S+L P DWR+KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 256 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 315
Query: 519 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 698
K L+SLSEQ L+DC + ++GC GGL NA+ IK GGL++EE Y Y G +C
Sbjct: 316 LKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLGGLETEEDYSYRGHLQTCS 373
Query: 699 YKPQSSAANDTGYVDIPSKRKRL 767
+ + + V++ ++L
Sbjct: 374 FNAEKAKVYINDSVELSQNEQKL 396
Score = 25.0 bits (53), Expect(2) = 4e-31
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 865 CSSEDLDHGVLVVGYG 912
CS +DH VL+VGYG
Sbjct: 430 CSPWLIDHAVLLVGYG 445
>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
Length = 367
Score = 86.3 bits (212), Expect = 2e-17
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Frame = +3
Query: 192 EEGRRRAVWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG 371
E RR ++ +N+ +R E G F + F D+T EEF + ++G K
Sbjct: 58 EHARRLDIFAQNLAKAQRLQ-EEDLGTAEF--GVTPFSDLTEEEFGQ-LHGHHWGAGKAP 113
Query: 372 KVFLDAGSA----LTPHSVDWREK-GYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKL 536
+ + GS P S DWR+K G ++A+K+Q C CWA +A +E Q K +
Sbjct: 114 SMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQA 173
Query: 537 ISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFG 680
+ LS Q ++DC GCNGG + +AF + + GL SE+ YPY G
Sbjct: 174 VQLSVQQVLDCD--RCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKG 219
>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
Length = 411
Score = 63.5 bits (153), Expect(2) = 4e-13
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 462 HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KD 638
HCG CWAFS A+E K L LS Q ++DCS+ N GCNGG NA ++ K
Sbjct: 218 HCGGCWAFSVVSAVESAYAIKGQPLEVLSVQQVIDCSY--NNYGCNGGSTLNALYWLNKT 275
Query: 639 NGGLDSEESYPYFGKDGSCKY 701
+ S+ YP+ ++G C Y
Sbjct: 276 QVKVVSDSEYPFKAQNGLCHY 296
Score = 28.5 bits (62), Expect(2) = 4e-13
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 743 YSKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEHSAAAK 877
+S QE + K + T+GP+ V +DA S+Q Y GI H ++ +
Sbjct: 314 FSGQEDEMAKTLLTLGPLIVIVDA--VSWQDYLGGIIQHHCSSGE 356
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = +3
Query: 405 PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEG--QMFRKTSKLISLSEQNLVDC 569
P S DWR +VT V+NQ CGSC++F++ G +E ++ ++ LS Q +V C
Sbjct: 232 PASWDWRNVRGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 570 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYK 704
S + +GC GG + GL E +PY G D C K
Sbjct: 292 S--QYAQGCAGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVK 334
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,849,373
Number of extensions: 652867
Number of successful extensions: 1840
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1823
Number of HSP's successfully gapped: 25
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002478
(915 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 448 e-123
>Sscrofa_Chr10
|| Length = 79102373
Score = 448 bits (226), Expect = e-123
Identities = 229/230 (99%)
Strand = Plus / Minus
Query: 455 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911743 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 31911684
Query: 515 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911683 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 31911624
Query: 575 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911623 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 31911564
Query: 635 ggacaacggaggcctggactcagaggaatcctatccatactttggaaagg 684
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911563 ggacaatggaggcctggactcagaggaatcctatccatactttggaaagg 31911514
Score = 323 bits (163), Expect = 1e-85
Identities = 211/227 (92%)
Strand = Plus / Plus
Query: 455 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 514
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 76999957 tcagggtcagtgtggttcttgttgggcttttagtgccaccggcgcccttgaaggacagat 77000016
Query: 515 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 574
||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 77000017 gttccggaaaaccggcaagcttgtttcactgagtgagcagaacctggtggactgttctcg 77000076
Query: 575 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 634
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 77000077 gcctcaaggcaatcagggctgcaatggtggcctaatggataatgccttccagtacgtgaa 77000136
Query: 635 ggacaacggaggcctggactcagaggaatcctatccatactttggaa 681
|||||| |||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 77000137 ggacaatggaggcctggacacagaggaatcctatccgtaccttggaa 77000183
Score = 311 bits (157), Expect = 4e-82
Identities = 167/169 (98%), Gaps = 1/169 (0%)
Strand = Plus / Minus
Query: 679 gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910761 gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 31910702
Query: 739 tggatattccaa-gcaagagaaagcgcttatgaaggccgtggcaactgtggggcccatct 797
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910701 tggatattccaaagcaggagaaagcgcttatgaaggccgtggcaactgtggggcccatct 31910642
Query: 798 ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 846
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910641 ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 31910593
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 311 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912281 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 31912222
Query: 371 aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912221 aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 31912162
Query: 431 aggctatgtaactgctgtgaagaatcagg 459
|||||||||||||||||||||||||||||
Sbjct: 31912161 aggctatgtaactgctgtgaagaatcagg 31912133
Score = 268 bits (135), Expect = 5e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 50 agatctttgaaacatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 109
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912940 agatctttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 31912881
Query: 110 agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912880 agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 31912821
Query: 170 caggaaactctatggcttg 188
|||||||||||||||||||
Sbjct: 31912820 caggaaactctatggcttg 31912802
Score = 230 bits (116), Expect = 1e-57
Identities = 122/124 (98%)
Strand = Plus / Minus
Query: 188 gaatgaagaaggaaggcggagagccgtatgggagaagaacatgaaaatgattgaacggca 247
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 31912505 gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 31912446
Query: 248 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912445 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 31912386
Query: 308 catg 311
||||
Sbjct: 31912385 catg 31912382
Score = 174 bits (88), Expect = 5e-41
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 188 gaatgaagaaggaaggcggagagccgtatgggagaagaacatgaaaatgattgaacggca 247
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 76999489 gaatgaagaaggatggcggagagccgtatgggagaagaatatgaaaatgattgaactgca 76999548
Query: 248 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 307
|||| |||| |||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 76999549 caatcaggaatacagccaagggaaacatggcttcagcatggccatgaatgcctttggtga 76999608
Query: 308 catg 311
||||
Sbjct: 76999609 catg 76999612
Score = 172 bits (87), Expect = 2e-40
Identities = 120/131 (91%)
Strand = Plus / Plus
Query: 55 tttgaaacatgaatccttcactcctcctggctgccttttgcttgggaatagcctcagctg 114
||||||||||||| ||||||||| ||||| | ||| ||||||||||||||||||||||||
Sbjct: 76999075 tttgaaacatgaaaccttcactcttcctgaccgccctttgcttgggaatagcctcagctg 76999134
Query: 115 ctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacacacagga 174
|||||| || |||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 76999135 ctccaaaacttgatcaaaatttagatgcagactggtacaagtggaaggcaacacacggga 76999194
Query: 175 aactctatggc 185
||||||||||
Sbjct: 76999195 gactctatggc 76999205
Score = 123 bits (62), Expect = 2e-25
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 843 caggcatttattttgaac-acagtgcagcagcgaagacctggatcatggcgttctggtgg 901
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31909183 caggcatttattttgaaccacagtgcagcagcgaagatctggatcatggcgttctggtgg 31909124
Query: 902 tcggctatggcgtt 915
||||||||||||||
Sbjct: 31909123 tcggctatggcgtt 31909110
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 1 cccaacttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31913478 cccaacttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 31913428
Score = 93.7 bits (47), Expect = 2e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 311 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 370
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct: 76999715 gaccaatgaagaattcaggcaggtgatgaatggctttcaaaaccagaagcacaagaaggg 76999774
Query: 371 aaaagtattcc 381
||||| ||||
Sbjct: 76999775 gaaagtgttcc 76999785
Score = 83.8 bits (42), Expect = 2e-13
Identities = 112/134 (83%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 702 aagccccagagttctgctgccaacgacactggttacgtggatattcca-agcaagagaaa 760
|||||| || ||||||||||||||||||| || | |||||| || || ||| |||||
Sbjct: 77000901 aagcccgagtgttctgctgccaacgacaccggcttcgtggacatccctcagcgggagaag 77000960
Query: 761 gcgcttatgaaggccgtggcaactgtggggcccatctctgttggtatagatgcaagccat 820
|| ||||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 77000961 gcccttatgaaggcagtcgcaactgtggggcccatctctgttgctattgatgcgggccat 77001020
Query: 821 gaatccttccagtt 834
||| ||||||||
Sbjct: 77001021 tcatctttccagtt 77001034
Score = 63.9 bits (32), Expect = 1e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 865 tgcagcagcgaagacctggatcatggcgttctggtggtcggctatggc 912
||||||||| |||||||||||||||| ||| ||||||| |||||||||
Sbjct: 77001786 tgcagcagcaaagacctggatcatggtgttttggtggttggctatggc 77001833
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,227,040
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 915
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 894
Effective length of database: 2,808,413,156
Effective search space: 2510721361464
Effective search space used: 2510721361464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)