Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 504 e-144
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 506 e-144
Alignment gi|NP_001029607.1| cathepsin K [Bos taurus]. 318 7e-87
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 302 3e-82
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 214 7e-56
Alignment gi|NP_001068884.1| cathepsin F [Bos taurus]. 171 1e-42
Alignment gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B... 138 1e-32
Alignment gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus]. 138 1e-32
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 108 8e-24
Alignment gi|NP_776456.1| cathepsin B precursor [Bos taurus]. 87 2e-17
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 504 bits (1298), Expect(2) = e-144
Identities = 239/319 (74%), Positives = 267/319 (83%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNPSLLL A CLGIASAAP+ DHSLD W WKA HRK Y LNEEG R+A+W+KNMKMIE
Sbjct: 1 MNPSLLLTALCLGIASAAPKFDHSLDTQWKLWKAAHRKPYDLNEEGWRKAVWKKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ QGKHSF+MAMNAFGDMTNEEFR TMNGFQ QK+KKGK F + A P SVDW
Sbjct: 61 LHNQEYSQGKHSFSMAMNAFGDMTNEEFRHTMNGFQRQKNKKGKEFHETIFASIPPSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVT VKNQG CGSCWAFSATGALEGQMF+KT KL+SLSEQNLVDCS PEGN GC+G
Sbjct: 121 REKGYVTPVKNQGKCGSCWAFSATGALEGQMFQKTGKLVSLSEQNLVDCSQPEGNRGCHG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
G +DNAFQY+ D GGLDSEESYPY G G+C Y P +SAAN+TG+VD+PKQEKALMKAVA
Sbjct: 181 GFIDNAFQYVLDVGGLDSEESYPYTGLVGTCLYNPNNSAANETGFVDLPKQEKALMKAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
+GPISV +DA + SFQFY +GIY+EP CSSE +DH VLVVGYG EGA S +NKYWLV+N
Sbjct: 241 NLGPISVAVDAHNPSFQFYKSGIYYEPNCSSESVDHAVLVVGYGFEGADSDDNKYWLVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
SWG WGM+GYIKM KD+N
Sbjct: 301 SWGEHWGMNGYIKMAKDRN 319
Score = 28.1 bits (61), Expect(2) = e-144
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA MASYP V
Sbjct: 320 NHCGIATMASYPTV 333
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 506 bits (1302), Expect(2) = e-144
Identities = 236/320 (73%), Positives = 269/320 (84%), Gaps = 2/320 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNPS L CLG+ASAAP+ D +LDA W++WKATHR+LYG+NEE RRA+WEKN K+I+
Sbjct: 1 MNPSFFLTVLCLGVASAAPKLDPNLDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIID 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ +GKH+F MAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F + P SVDW
Sbjct: 61 LHNQEYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLVDVPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
+KGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS +GN+GCNG
Sbjct: 121 TKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
GLMDNAFQYIKDNGGLDSEESYPY D SC YKP+ SAANDTG+VDIP++EKALMKAV
Sbjct: 181 GLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQ 951
ATVGPISV IDA H SFQFY +GIY++P CS +DLDHGVLVVGYG EG S NNK+W+V+
Sbjct: 241 ATVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYGFEGTDSNNNKFWIVK 300
Query: 952 NSWGNTWGMDGYIKMTKDQN 1011
NSWG WG +GY+KM KDQN
Sbjct: 301 NSWGPEWGWNGYVKMAKDQN 320
Score = 25.8 bits (55), Expect(2) = e-144
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA ASYP V
Sbjct: 321 NHCGIATAASYPTV 334
>ref|NP_001029607.1| cathepsin K [Bos taurus].
Length = 334
Score = 318 bits (814), Expect = 7e-87
Identities = 158/317 (49%), Positives = 208/317 (65%), Gaps = 5/317 (1%)
Frame = +1
Query: 76 LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWE 252
L L + S A + LD W WK T+RK Y +E RR IWEKN+K I HN E
Sbjct: 9 LTVLLLPVVSFALYPEEILDTQWELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLE 68
Query: 253 HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 423
G H++ +AMN GDMT+EE + M G + ++ +++ P SVD+R+
Sbjct: 69 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRK 128
Query: 424 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 129 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 186
Query: 604 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVAT 780
M NAFQY++ N G+DSE++YPY G+D +C Y P AA GY +IP+ EKAL +AVA
Sbjct: 187 MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 246
Query: 781 VGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSW 960
VGPISV IDAS SFQFY G+Y++ C+S++L+H VL VGYG++ NK+W+++NSW
Sbjct: 247 VGPISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSW 303
Query: 961 GNTWGMDGYIKMTKDQN 1011
G WG GYI M +++N
Sbjct: 304 GENWGNKGYILMARNKN 320
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 302 bits (774), Expect = 3e-82
Identities = 161/328 (49%), Positives = 207/328 (63%), Gaps = 5/328 (1%)
Frame = +1
Query: 70 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHN 246
L+ A A A D +LD W WK T+ K Y NEE RR IWEKN+K + HN
Sbjct: 4 LVWALLLCSSAMAHVHRDPTLDHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHN 63
Query: 247 WEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWRE 423
EH G HS+ + MN GDMT+EE M+ + + + + + P S+DWRE
Sbjct: 64 LEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWRE 123
Query: 424 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGG 600
KG VT VK QG CGSCWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG
Sbjct: 124 KGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGG 183
Query: 601 LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVA 777
M AFQYI DN G+DSE SYPY DG C+Y ++ AA + Y+++P E+AL +AVA
Sbjct: 184 FMTEAFQYIIDNNGIDSEASYPYKAMDGKCQYDVKNRAATCSRYIELPFGSEEALKEAVA 243
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYG-VEGAHSNNKYWLVQN 954
GP+SVGIDASH SF Y TG+Y++P C +++++HGVLVVGYG ++G YWLV+N
Sbjct: 244 NKGPVSVGIDASHSSFFLYKTGVYYDPSC-TQNVNHGVLVVGYGNLDG----KDYWLVKN 298
Query: 955 SWGNTWGMDGYIKMTKDQNTTVESPTWP 1038
SWG +G GYI+M ++ +P
Sbjct: 299 SWGLHFGDQGYIRMARNSGNHCGIANYP 326
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 214 bits (545), Expect(2) = 7e-56
Identities = 125/324 (38%), Positives = 177/324 (54%), Gaps = 8/324 (2%)
Frame = +1
Query: 64 PSLLLAAFCLGIAS--AAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAIWEKNMKMI 234
P L A+ LG + AA +SL+ ++ W H+K Y E R + N++ I
Sbjct: 6 PLLCAGAWLLGAPACGAAELAANSLEKFHFQSWMVQHQKKYSSEEYYHRLQAFASNLREI 65
Query: 235 ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 414
HN + H+F M +N F DM+ +E ++ + Q K G+ P S+D
Sbjct: 66 NAHNARN----HTFKMGLNQFSDMSFDELKRKYLWSEPQNCSATKSNYLRGTGPYPPSMD 121
Query: 415 WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 591
WR+KG +VT VKNQG CGSCW FS TGALE + T KL L+EQ LVDC+ N GC
Sbjct: 122 WRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGC 181
Query: 592 NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAA--NDTGYVDIPKQEKALM 765
GGL AF+YI+ N G+ E++YPY G+DG CKY+P + A D + + E+A++
Sbjct: 182 QGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIAFVKDVANITL-NDEEAMV 240
Query: 766 KAVATVGPISVGIDASHESFQFYSTGIYFEPQC--SSEDLDHGVLVVGYGVEGAHSNNKY 939
+AVA P+S + + + F Y GIY C + + ++H VL VGYG E Y
Sbjct: 241 EAVALHNPVSFAFEVTAD-FMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE---KGIPY 296
Query: 940 WLVQNSWGNTWGMDGYIKMTKDQN 1011
W+V+NSWG WGM GY + + +N
Sbjct: 297 WIVKNSWGPNWGMKGYFLIERGKN 320
Score = 22.3 bits (46), Expect(2) = 7e-56
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 999 QRSEHHCGIAHMASYPV 1049
+R ++ CG+A AS+P+
Sbjct: 316 ERGKNMCGLAACASFPI 332
>ref|NP_001068884.1| cathepsin F [Bos taurus].
Length = 460
Score = 171 bits (432), Expect = 1e-42
Identities = 103/280 (36%), Positives = 147/280 (52%), Gaps = 4/280 (1%)
Frame = +1
Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 333
T+ + Y EE R +++ NM ++ R + + F D+T EEFR +
Sbjct: 169 TYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRG---TARYGVTKFSDLTEEEFRTIYL 225
Query: 334 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 513
N + + + P DWR KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 226 NPLLKDAPGRNMRPAQPVTDVPPPQWDWRNKGAVTNVKDQGMCGSCWAFSVTGNVEGQWF 285
Query: 514 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 693
K L+SLSEQ L+DC + ++ C GGL NA+ I+ GGL++E+ Y Y G+ +C
Sbjct: 286 LKRGTLLSLSEQELLDCD--KTDKACLGGLPSNAYSAIRTLGGLETEDDYSYRGRLQTCS 343
Query: 694 YKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCS 867
+ + + V++ K E+ L +A GP+S+ I+A QFY GI P CS
Sbjct: 344 FSAEKAKVYINDSVELSKNEQKLAAWLAKNGPVSIAINAF--GMQFYRHGISHPLRPLCS 401
Query: 868 SEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
+DH VL+VGYG A +W ++NSWG WG +GY
Sbjct: 402 PWLIDHAVLLVGYGNRSA---IPFWAIKNSWGTDWGEEGY 438
>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
Length = 375
Score = 138 bits (347), Expect = 1e-32
Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 4/208 (1%)
Frame = +1
Query: 400 PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 579
P DWR+K VT V+NQ CG CWAFS GA+E K L LS Q ++DCS+
Sbjct: 163 PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 220
Query: 580 NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPK 747
N GCNGG +A ++ K L + YP+ ++G C+Y S S ++ GY D
Sbjct: 221 NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 280
Query: 748 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS 927
QE + +A+ +GP+ V +DA S+Q Y GI + CSS + +H VLV G+ G
Sbjct: 281 QEDKMAEALLALGPLIVVVDAM--SWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG--- 334
Query: 928 NNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
+ YW+V+NSWG +WG+DGY+++ N
Sbjct: 335 SIPYWIVRNSWGTSWGIDGYVRVKMGGN 362
>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
Length = 384
Score = 138 bits (347), Expect = 1e-32
Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 4/208 (1%)
Frame = +1
Query: 400 PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 579
P DWR+K VT V+NQ CG CWAFS GA+E K L LS Q ++DCS+
Sbjct: 172 PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 229
Query: 580 NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPK 747
N GCNGG +A ++ K L + YP+ ++G C+Y S S ++ GY D
Sbjct: 230 NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 289
Query: 748 QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS 927
QE + +A+ +GP+ V +DA S+Q Y GI + CSS + +H VLV G+ G
Sbjct: 290 QEDKMAEALLALGPLIVVVDAM--SWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG--- 343
Query: 928 NNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
+ YW+V+NSWG +WG+DGY+++ N
Sbjct: 344 SIPYWIVRNSWGTSWGIDGYVRVKMGGN 371
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 108 bits (270), Expect = 8e-24
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
Frame = +1
Query: 400 PHSVDWREK---GYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
P S DWR +VT V+NQG CGSC++F++ G +E ++ T+ + LS Q +V C
Sbjct: 232 PTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 565 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 744
S + +GC GG + GL E+ +PY G D C+ K + Y +
Sbjct: 292 S--QYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGCFRYYSSEYHYVG 349
Query: 745 KQ----EKALMKA-VATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVL 894
+ALMK + GP++V + ++ F Y G+Y +P E +H VL
Sbjct: 350 GFYGGCNEALMKLELVHQGPMAVAFEV-YDDFLHYRKGVYHHTGLRDPFNPFELTNHAVL 408
Query: 895 VVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
+VGYG + A S YW+V+NSWG +WG +GY ++ +
Sbjct: 409 LVGYGTDAA-SGLDYWIVKNSWGTSWGENGYFRIRR 443
>ref|NP_776456.1| cathepsin B precursor [Bos taurus].
Length = 335
Score = 87.4 bits (215), Expect = 2e-17
Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Frame = +1
Query: 382 AGSALTPHSVDWREKG----YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISL--S 543
A + P S D RE+ + +++QG CGSCWAF A A+ ++ ++ +++ S
Sbjct: 75 AADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVS 134
Query: 544 EQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFG----KDGSCKYKPQSS 711
++++ C E +GCNGG A+ + G + + G C++ S
Sbjct: 135 AEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGS 194
Query: 712 AANDTGYVDIPK----------------------------QEKALMKAVATVGPISVGID 807
TG D PK EK +M + GP+ G
Sbjct: 195 RPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVE-GAF 253
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLD-HGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDG 984
+ + F Y +G+Y S E + H + ++G+GVE + YWLV NSW WG +G
Sbjct: 254 SVYSDFLLYKSGVY--QHVSGEIMGGHAIRILGWGVE---NGTPYWLVGNSWNTDWGDNG 308
Query: 985 YIKMTKDQN 1011
+ K+ + Q+
Sbjct: 309 FFKILRGQD 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,493,320
Number of extensions: 1219095
Number of successful extensions: 3599
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3556
Number of HSP's successfully gapped: 19
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 536 e-153
Alignment gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma... 461 e-130
Alignment gi|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (C... 345 3e-96
Alignment gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari... 320 2e-87
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 298 8e-81
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 205 2e-53
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 171 9e-43
Alignment gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca... 139 6e-33
Alignment gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein... 124 2e-28
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 110 2e-24
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 536 bits (1382), Expect(2) = e-153
Identities = 248/319 (77%), Positives = 279/319 (87%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNPSL L A CLGIASAAP+ D SL+A WY+WKATHR+LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1 MNPSLFLTALCLGIASAAPKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ QGKH FTMAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F + A P SVDW
Sbjct: 61 LHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFAEIPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS +GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
GLMDNAF+Y+KDNGGLDSEESYPY G+D +C YKP+ SAANDTG+VD+P++EKALMKAV
Sbjct: 181 GLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQN 954
AT+GPISV IDA H+SFQFY +GIYF+P CSS+DLDHGVLVVGYG EG SNNK+W+V+N
Sbjct: 241 ATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
SWG WG +GY+KM KDQN
Sbjct: 301 SWGPEWGWNGYVKMAKDQN 319
Score = 25.8 bits (55), Expect(2) = e-153
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA ASYP V
Sbjct: 320 NHCGIATAASYPTV 333
>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted protein)
(MEP) [Canis familiaris].
Length = 333
Score = 461 bits (1185), Expect = e-130
Identities = 213/319 (66%), Positives = 257/319 (80%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M+PSL LAA CLGIASAAP+ DHSLDA W +WK H KLY +EEG RR +WE+NM+MIE
Sbjct: 1 MHPSLFLAALCLGIASAAPQQDHSLDAHWSQWKEAHGKLYDKDEEGWRRTVWERNMEMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
+HN E+ QG+HSFT+AMNAFGDMTNEEF++ +N F+ QKHKKGKVF A P SVDW
Sbjct: 61 QHNQEYSQGEHSFTLAMNAFGDMTNEEFKQVLNDFKIQKHKKGKVFPAPLFAEVPSSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
RE+GYVT VK+QG C CWAFSATGALEGQMFRKT KL+SLSEQNLVDCSW +GN GCNG
Sbjct: 121 REQGYVTPVKDQGQCLGCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSWSQGNRGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLM+ AFQY+KDNGGLDSEESYPY ++ CKY+P+ SAAN T + I +E LM VA
Sbjct: 181 GLMEYAFQYVKDNGGLDSEESYPYLARNEPCKYRPEKSAANVTAFWPILNEEDGLMTTVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQN 954
TVGP+S +D+S +SFQFY GIY++P+CS++ L+HGVLVVGYG EGA S+N KYW+V+N
Sbjct: 241 TVGPVSAAVDSSPQSFQFYKKGIYYDPKCSNKLLNHGVLVVGYGFEGAESDNKKYWIVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
SWG WGM GY+ + KD++
Sbjct: 301 SWGTNWGMQGYMLLAKDRD 319
>ref|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (Cathepsin V) (Cathepsin
U) [Canis familiaris].
Length = 289
Score = 345 bits (885), Expect(2) = 3e-96
Identities = 184/307 (59%), Positives = 206/307 (67%), Gaps = 1/307 (0%)
Frame = +1
Query: 94 GIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHS 273
GI SAAP+ D SL+A WY+WKA HR LY +NEEG RRA+WEKNMKMIE HN E+ QGKH
Sbjct: 10 GIVSAAPKLDQSLNAQWYQWKAMHR-LYAMNEEGWRRAVWEKNMKMIELHNREYSQGKHG 68
Query: 274 FTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
FTMAMNAFG MTNEEFR+ MNGFQNQKHKKGKVF + A P SVDWREKGYVT VKNQ
Sbjct: 69 FTMAMNAFGYMTNEEFRQVMNGFQNQKHKKGKVFQEPLFAEIPKSVDWREKGYVTPVKNQ 128
Query: 454 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKD 633
GHCGSCWAFSATG L+GQMF+KT KL NLVDC +GN+GCNGGLMDNAFQY+KD
Sbjct: 129 GHCGSCWAFSATGDLKGQMFQKTGKL------NLVDCYQAQGNKGCNGGLMDNAFQYVKD 182
Query: 634 NGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDA 810
NGGLDSEE Y Y G+D + YKP+ SAA A
Sbjct: 183 NGGLDSEECYLYLGRDTDTYNYKPECSAAMTL---------------------------A 215
Query: 811 SHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYI 990
S S G + Q S +G VVGYG EG SNNK W+V+NSWG WG +GY+
Sbjct: 216 SWTSL----NGRRLQQQ-RSRSWCYG--VVGYGFEGTDSNNKLWIVKNSWGTEWGWNGYV 268
Query: 991 KMTKDQN 1011
K K QN
Sbjct: 269 KTAKGQN 275
Score = 26.2 bits (56), Expect(2) = 3e-96
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 990 KDDQRSEHHCGIAHMASYPVV 1052
K + +HCGIA ASYP V
Sbjct: 269 KTAKGQNNHCGIATAASYPTV 289
>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
Length = 330
Score = 320 bits (820), Expect = 2e-87
Identities = 160/312 (51%), Positives = 209/312 (66%), Gaps = 5/312 (1%)
Frame = +1
Query: 91 LGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWEHRQGK 267
L +AS A + LD W WK T+RK Y +E RR IWEKN+K I HN E G
Sbjct: 10 LPMASFALYPEEILDTQWDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGV 69
Query: 268 HSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWREKGYVT 438
H++ +AMN GDMT+EE + M G + + +++ + P SVD+R+KGYVT
Sbjct: 70 HTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKGYVT 129
Query: 439 AVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAF 618
VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG M NAF
Sbjct: 130 PVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGYMTNAF 187
Query: 619 QYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVATVGPIS 795
QY++ N G+DSE++YPY G+D SC Y P AA GY +IP+ EKAL +AVA VGPIS
Sbjct: 188 QYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPIS 247
Query: 796 VGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWG 975
V IDAS SFQFYS G+Y++ C+S++L+H VL VGYG++ NK+W+++NSWG WG
Sbjct: 248 VAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSWGENWG 304
Query: 976 MDGYIKMTKDQN 1011
GYI M +++N
Sbjct: 305 NKGYILMARNKN 316
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 298 bits (762), Expect = 8e-81
Identities = 158/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
Frame = +1
Query: 100 ASAAPRHDHSLDADWYKWKATHRKLYGL-NEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
A A D +LD W WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 14 AVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 277 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
+ MN GDMT EE M + + ++ + + P SVDWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQ 133
Query: 454 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
G CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI
Sbjct: 134 GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193
Query: 631 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
DN G+DSE SYPY +G C+Y + AA + Y ++P E AL +AVA GP+SV ID
Sbjct: 194 DNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAID 253
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
ASH SF Y +G+Y+EP C +++++HGVLVVGYG + N K YWLV+NSWG +G G
Sbjct: 254 ASHYSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDQG 308
Query: 985 YIKMTKDQNTTVESPTWP 1038
YI+M ++ ++P
Sbjct: 309 YIRMARNSGNHCGIASYP 326
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 205 bits (521), Expect(2) = 2e-53
Identities = 117/289 (40%), Positives = 161/289 (55%), Gaps = 6/289 (2%)
Frame = +1
Query: 163 HRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF 342
H+K Y E +R + N + I HN G H+F M +N F DM E +
Sbjct: 10 HQKKYSSEEYLQRLQTFVGNWRKINAHN----AGNHTFKMGLNQFSDMNFAEIKHKYLWS 65
Query: 343 QNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRK 519
+ Q K G+ P VDWR+KG +V+ VKNQG CGSCW FS TGALE + K
Sbjct: 66 EPQNCSATKGNYLRGTGPYPPFVDWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIAIK 125
Query: 520 TSKLISLSEQNLVDCSWPEGNEGCNG-GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKY 696
+ KL+SL+EQ LVDC+ N GC G G AF+YI+ N G+ E+SYPY G+DG CKY
Sbjct: 126 SGKLLSLAEQQLVDCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKY 185
Query: 697 KPQSSAA--NDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC-- 864
+P + A D + I E+A+++AVA P+S + + + F Y GIY C
Sbjct: 186 QPSKAIAFVKDVANITI-NDEQAMVEAVALYNPVSFAFEVTSD-FMMYRKGIYSSTSCHK 243
Query: 865 SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
+ + ++H VL VGYG + + YW+V+NSWG WGM+GY M + +N
Sbjct: 244 TPDKVNHAVLAVGYGEQ---NGIPYWIVKNSWGPQWGMNGYFLMERGKN 289
Score = 23.9 bits (50), Expect(2) = 2e-53
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 999 QRSEHHCGIAHMASYPV 1049
+R ++ CG+A ASYP+
Sbjct: 285 ERGKNMCGLAACASYPI 301
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 171 bits (434), Expect = 9e-43
Identities = 104/281 (37%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 336
T+ + Y EE R +++ NM ++ R + + F D+T EEFR
Sbjct: 150 TYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRG---TAQYGITKFSDLTEEEFRTIYL 206
Query: 337 G--FQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 510
+ + KK ++ P DWR KG VT VK+QG CGSCWAFS TG +EGQ
Sbjct: 207 NPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 266
Query: 511 FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 690
F K L+SLSEQ L+DC + ++ C GGL NA+ I GGL++E+ Y Y G +C
Sbjct: 267 FLKEGTLLSLSEQELLDCD--KVDKACLGGLPSNAYSAIMTLGGLETEDDYSYQGHLQAC 324
Query: 691 KYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQC 864
+ + + +++ + E+ L +A GPISV I+A QFY GI P C
Sbjct: 325 SFSAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINAF--GMQFYRHGISHPLRPLC 382
Query: 865 SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
S +DH VL+VGY G S +W ++NSWG WG +GY
Sbjct: 383 SPWLIDHAVLLVGY---GNRSGIPFWAIKNSWGTDWGEEGY 420
>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
Length = 518
Score = 139 bits (349), Expect = 6e-33
Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 6/245 (2%)
Frame = +1
Query: 271 SFTMAMNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAV 444
S +N F ++ EEF+ + + + +V + P DWR+K VT V
Sbjct: 259 SAVYGINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVRTSIRNVSLPLRFDWRDKRVVTQV 318
Query: 445 KNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQY 624
+NQ CG CWAFS GA+E K L +S Q ++DCS+ N GC+GG NA +
Sbjct: 319 RNQQTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDCSY--NNYGCSGGSTLNALNW 376
Query: 625 I-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPKQEKALMKAVATVGPI 792
+ K L + YP+ ++G C Y S S + GY D QE + K + T GP+
Sbjct: 377 LNKTQVKLVRDSEYPFKAQNGLCHYFSDSYSGFSIRGYSAYDFSDQEDEMAKVLLTFGPL 436
Query: 793 SVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTW 972
V +DA S+Q Y GI + CSS + +H VL+ G+ G + YW+V+NSWG++W
Sbjct: 437 VVVVDA--VSWQDYLGGI-IQHHCSSGEANHAVLITGFDKIG---STPYWIVRNSWGSSW 490
Query: 973 GMDGY 987
G+DGY
Sbjct: 491 GVDGY 495
>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
Length = 374
Score = 124 bits (311), Expect = 2e-28
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 27/267 (10%)
Frame = +1
Query: 295 FGDMTNEEFRKTMNGFQNQKHKKG-------KVFLDAGSALTPHSVDWRE-KGYVTAVKN 450
F D+T EEF + F + G KV + P + DWR+ G ++ +K
Sbjct: 91 FSDLTEEEFGQ----FYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQ 146
Query: 451 QGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIK 630
QG+C CWA +A G +E + + + +S Q L+DC +GC GG +AF +
Sbjct: 147 QGNCRCCWAMAAAGNIEALWGIRYHQPVEVSVQELLDCG--RCGDGCKGGFTWDAFITVL 204
Query: 631 DNGGLDSEESYPYFG--KDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGI 804
+N GL S + YP+ G K C K A ++ + E+A+ +AT GPI+V I
Sbjct: 205 NNSGLASAKDYPFLGNTKPHRCLAKKYKKVAWIQDFIMLQGNEQAIAWYLATKGPITVTI 264
Query: 805 DASHESFQFYSTGIY--FEPQCSSEDLDHGVLVVGYG---------VEGAHSNNK----- 936
+ + Q Y G+ C + +DH VL+VG+G EG S +
Sbjct: 265 NM--KLLQHYQKGVIQATHTTCDPQRVDHSVLLVGFGKSKSVAGKQAEGGSSRPRPHHPI 322
Query: 937 -YWLVQNSWGNTWGMDGYIKMTKDQNT 1014
YW+++NSWG WG +GY ++ + NT
Sbjct: 323 PYWILKNSWGAEWGEEGYFRLHRGNNT 349
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 110 bits (276), Expect = 2e-24
Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Frame = +1
Query: 400 PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
P S DWR +V+ V+NQ CGSC+AF++T LE ++ T+ + LS Q +V C
Sbjct: 229 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSC 288
Query: 565 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK----YKPQSSAANDTGY 732
S + +GC GG + GL E +PY G D CK ++ SS G
Sbjct: 289 S--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCKPNDCFRYYSSEYYYVGG 346
Query: 733 VDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVLV 897
E + + GP++V + ++ F Y GIY+ +P E +H VL+
Sbjct: 347 FYGACNEALMKLELVRHGPMAVAFEV-YDDFFHYQKGIYYHTGLRDPFNPFELTNHAVLL 405
Query: 898 VGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
VGYG + A S YW+V+NSWG+ WG DGY ++ +
Sbjct: 406 VGYGTDSA-SGMDYWIVKNSWGSRWGEDGYFRIRR 439
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,320,081
Number of extensions: 1245093
Number of successful extensions: 3663
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3620
Number of HSP's successfully gapped: 20
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens]. 521 e-148
Alignment gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens]. 521 e-148
Alignment gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens]. 494 e-140
Alignment gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens]. 494 e-140
Alignment gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens]. 320 1e-87
Alignment gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie... 299 4e-81
Alignment gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa... 248 9e-66
Alignment gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens]. 223 8e-59
Alignment gi|NP_003784.2| cathepsin F precursor [Homo sapiens]. 174 1e-43
Alignment gi|NP_001325.1| cathepsin O preproprotein [Homo sapiens]. 144 2e-34
>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 521 bits (1341), Expect = e-148
Identities = 246/318 (77%), Positives = 270/318 (84%), Gaps = 1/318 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNP+L+LAAFCLGIASA DHSL+A W KWKA H +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF + P SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLMD AFQY++DNGGLDSEESYPY + SCKY P+ S ANDTG+VDIPKQEKALMKAVA
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
TVGPISV IDA HESF FY GIYFEP CSSED+DHGVLVVGYG E S NNKYWLV+N
Sbjct: 241 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQ 1008
SWG WGM GY+KM KD+
Sbjct: 301 SWGEEWGMGGYVKMAKDR 318
>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 521 bits (1341), Expect = e-148
Identities = 246/318 (77%), Positives = 270/318 (84%), Gaps = 1/318 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNP+L+LAAFCLGIASA DHSL+A W KWKA H +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF + P SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLMD AFQY++DNGGLDSEESYPY + SCKY P+ S ANDTG+VDIPKQEKALMKAVA
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
TVGPISV IDA HESF FY GIYFEP CSSED+DHGVLVVGYG E S NNKYWLV+N
Sbjct: 241 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQ 1008
SWG WGM GY+KM KD+
Sbjct: 301 SWGEEWGMGGYVKMAKDR 318
>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 494 bits (1273), Expect(2) = e-140
Identities = 235/320 (73%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MN SL+LAAFCLGIASA P+ D +LD WY+WKATHR+LYG NEEG RRA+WEKNMKMIE
Sbjct: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ QGKH FTMAMNAFGDMTNEEFR+ M F+NQK +KGKVF + P SVDW
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
R+KGYVT VKNQ CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPKQEKALMKAV 774
G M AFQY+K+NGGLDSEESYPY D CKY+P++S ANDTG+ V P +EKALMKAV
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQ 951
ATVGPISV +DA H SFQFY +GIYFEP CSS++LDHGVLVVGYG EGA+SNN KYWLV+
Sbjct: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
Query: 952 NSWGNTWGMDGYIKMTKDQN 1011
NSWG WG +GY+K+ KD+N
Sbjct: 301 NSWGPEWGSNGYVKIAKDKN 320
Score = 24.6 bits (52), Expect(2) = e-140
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA ASYP V
Sbjct: 321 NHCGIATAASYPNV 334
>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 494 bits (1273), Expect(2) = e-140
Identities = 235/320 (73%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MN SL+LAAFCLGIASA P+ D +LD WY+WKATHR+LYG NEEG RRA+WEKNMKMIE
Sbjct: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ QGKH FTMAMNAFGDMTNEEFR+ M F+NQK +KGKVF + P SVDW
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
R+KGYVT VKNQ CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPKQEKALMKAV 774
G M AFQY+K+NGGLDSEESYPY D CKY+P++S ANDTG+ V P +EKALMKAV
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQ 951
ATVGPISV +DA H SFQFY +GIYFEP CSS++LDHGVLVVGYG EGA+SNN KYWLV+
Sbjct: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
Query: 952 NSWGNTWGMDGYIKMTKDQN 1011
NSWG WG +GY+K+ KD+N
Sbjct: 301 NSWGPEWGSNGYVKIAKDKN 320
Score = 24.6 bits (52), Expect(2) = e-140
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA ASYP V
Sbjct: 321 NHCGIATAASYPNV 334
>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
Length = 329
Score = 320 bits (821), Expect = 1e-87
Identities = 159/317 (50%), Positives = 208/317 (65%), Gaps = 5/317 (1%)
Frame = +1
Query: 76 LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWE 252
L L + S A + LD W WK THRK Y +E RR IWEKN+K I HN E
Sbjct: 4 LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLE 63
Query: 253 HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 423
G H++ +AMN GDMT+EE + M G + + +++ P SVD+R+
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK 123
Query: 424 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 181
Query: 604 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVAT 780
M NAFQY++ N G+DSE++YPY G++ SC Y P AA GY +IP+ EKAL +AVA
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241
Query: 781 VGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSW 960
VGP+SV IDAS SFQFYS G+Y++ C+S++L+H VL VGYG++ NK+W+++NSW
Sbjct: 242 VGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSW 298
Query: 961 GNTWGMDGYIKMTKDQN 1011
G WG GYI M +++N
Sbjct: 299 GENWGNKGYILMARNKN 315
>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
Length = 331
Score = 299 bits (765), Expect = 4e-81
Identities = 153/317 (48%), Positives = 205/317 (64%), Gaps = 4/317 (1%)
Frame = +1
Query: 100 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
A A D +LD W+ WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 14 AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 277 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
+ MN GDMT+EE M+ + + ++ + + + P SVDWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQ 133
Query: 454 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
G CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI
Sbjct: 134 GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193
Query: 631 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
DN G+DS+ SYPY D C+Y + AA + Y ++P +E L +AVA GP+SVG+D
Sbjct: 194 DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 253
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
A H SF Y +G+Y+EP C +++++HGVLVVGY G + +YWLV+NSWG+ +G +GY
Sbjct: 254 ARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGY---GDLNGKEYWLVKNSWGHNFGEEGY 309
Query: 988 IKMTKDQNTTVESPTWP 1038
I+M +++ ++P
Sbjct: 310 IRMARNKGNHCGIASFP 326
>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
Length = 281
Score = 248 bits (632), Expect = 9e-66
Identities = 135/316 (42%), Positives = 178/316 (56%), Gaps = 3/316 (0%)
Frame = +1
Query: 100 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
A A D +LD W+ WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 14 AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73
Query: 277 TMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQG 456
+ MN GDM G
Sbjct: 74 DLGMNHLGDM-------------------------------------------------G 84
Query: 457 HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIKD 633
CG+CWAFSA GALE Q+ KT KL+SLS QNLVDCS + GN+GCNGG M AFQYI D
Sbjct: 85 SCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 144
Query: 634 NGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGIDA 810
N G+DS+ SYPY D C+Y + AA + Y ++P +E L +AVA GP+SVG+DA
Sbjct: 145 NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDA 204
Query: 811 SHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYI 990
H SF Y +G+Y+EP C +++++HGVLVVGY G + +YWLV+NSWG+ +G +GYI
Sbjct: 205 RHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGY---GDLNGKEYWLVKNSWGHNFGEEGYI 260
Query: 991 KMTKDQNTTVESPTWP 1038
+M +++ ++P
Sbjct: 261 RMARNKGNHCGIASFP 276
>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
Length = 335
Score = 223 bits (567), Expect(2) = 8e-59
Identities = 129/324 (39%), Positives = 179/324 (55%), Gaps = 8/324 (2%)
Frame = +1
Query: 64 PSLLLAAFCLGI--ASAAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAIWEKNMKMI 234
P L A+ LG+ AA +SL+ +K W + HRK Y E R + N + I
Sbjct: 6 PLLCAGAWLLGVPVCGAAELCVNSLEKFHFKSWMSKHRKTYSTEEYHHRLQTFASNWRKI 65
Query: 235 ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 414
HN G H+F MA+N F DM+ E + + Q K G+ P SVD
Sbjct: 66 NAHN----NGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNYLRGTGPYPPSVD 121
Query: 415 WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 591
WR+KG +V+ VKNQG CGSCW FS TGALE + T K++SL+EQ LVDC+ N GC
Sbjct: 122 WRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGC 181
Query: 592 NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSA--ANDTGYVDIPKQEKALM 765
GGL AF+YI N G+ E++YPY GKDG CK++P + D + I E+A++
Sbjct: 182 QGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITI-YDEEAMV 240
Query: 766 KAVATVGPISVGIDASHESFQFYSTGIYFEPQC--SSEDLDHGVLVVGYGVEGAHSNNKY 939
+AVA P+S + + + F Y TGIY C + + ++H VL VGYG + + Y
Sbjct: 241 EAVALYNPVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEK---NGIPY 296
Query: 940 WLVQNSWGNTWGMDGYIKMTKDQN 1011
W+V+NSWG WGM+GY + + +N
Sbjct: 297 WIVKNSWGPQWGMNGYFLIERGKN 320
Score = 23.9 bits (50), Expect(2) = 8e-59
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 999 QRSEHHCGIAHMASYPV 1049
+R ++ CG+A ASYP+
Sbjct: 316 ERGKNMCGLAACASYPI 332
>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
Length = 484
Score = 174 bits (441), Expect = 1e-43
Identities = 110/281 (39%), Positives = 149/281 (53%), Gaps = 5/281 (1%)
Frame = +1
Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 336
T+ + Y EE R R +++ NM ++ R + + F D+T EEFR
Sbjct: 193 TYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRG---TAQYGVTKFSDLTEEEFRTIYL 249
Query: 337 GFQNQKHKKGKVFLDAGSA--LTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 510
+K + G A S L P DWR KG VT VK+QG CGSCWAFS TG +EGQ
Sbjct: 250 NTLLRK-EPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 308
Query: 511 FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 690
F L+SLSEQ L+DC + ++ C GGL NA+ IK+ GGL++E+ Y Y G SC
Sbjct: 309 FLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC 366
Query: 691 KYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQC 864
+ + + V++ + E+ L +A GPISV I+A QFY GI P C
Sbjct: 367 NFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLC 424
Query: 865 SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
S +DH VL+VGY G S+ +W ++NSWG WG GY
Sbjct: 425 SPWLIDHAVLLVGY---GNRSDVPFWAIKNSWGTDWGEKGY 462
>ref|NP_001325.1| cathepsin O preproprotein [Homo sapiens].
Length = 321
Score = 144 bits (362), Expect = 2e-34
Identities = 91/248 (36%), Positives = 129/248 (52%), Gaps = 6/248 (2%)
Frame = +1
Query: 286 MNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAVKNQGH 459
+N F + EEF+ + K + +V + + P DWR+K VT V+NQ
Sbjct: 69 INQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQM 128
Query: 460 CGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KDN 636
CG CWAFS GA+E K L LS Q ++DCS+ N GCNGG NA ++ K
Sbjct: 129 CGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSY--NNYGCNGGSTLNALNWLNKMQ 186
Query: 637 GGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPKQEKALMKAVATVGPISVGID 807
L + YP+ ++G C Y S S + GY D QE + KA+ T GP+ V +D
Sbjct: 187 VKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVD 246
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
A S+Q Y GI + CSS + +H VL+ G+ G + YW+V+NSWG++WG+DGY
Sbjct: 247 A--VSWQDYLGGI-IQHHCSSGEANHAVLITGFDKTG---STPYWIVRNSWGSSWGVDGY 300
Query: 988 IKMTKDQN 1011
+ N
Sbjct: 301 AHVKMGSN 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,691,999
Number of extensions: 1240884
Number of successful extensions: 3607
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3554
Number of HSP's successfully gapped: 26
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus]. 484 e-138
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 431 e-121
Alignment gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus]. 430 e-121
Alignment gi|NP_835199.1| testin-2 precursor [Mus musculus]. 407 e-115
Alignment gi|NP_067420.1| cathepsin 6 [Mus musculus]. 371 e-103
Alignment gi|NP_064680.1| cathepsin R precursor [Mus musculus]. 364 e-101
Alignment gi|NP_062414.3| cathepsin 8 [Mus musculus]. 363 e-101
Alignment gi|NP_071721.2| cathepsin M precursor [Mus musculus]. 363 e-100
Alignment gi|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus]. 357 9e-99
Alignment gi|NP_036137.1| cathepsin J [Mus musculus]. 353 2e-98
>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
Length = 334
Score = 484 bits (1245), Expect(2) = e-138
Identities = 225/319 (70%), Positives = 266/319 (83%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MN LLLA CLG A A P+ D + A+W++WK+THR+LYG NEE RRAIWEKNM+MI+
Sbjct: 1 MNLLLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQ 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ G+H F+M MNAFGDMTNEEFR+ +NG+++QKHKKG++F + P SVDW
Sbjct: 61 LHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLKIPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKG VT VKNQG CGSCWAFSA+G LEGQMF KT KLISLSEQNLVDCS +GN+GCNG
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLMD AFQYIK+NGGLDSEESYPY KDGSCKY+ + + ANDTG+VDIP+QEKALMKAVA
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQQEKALMKAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
TVGPISV +DASH S QFYS+GIY+EP CSS++LDHGVL+VGYG EG SN NKYWLV+N
Sbjct: 241 TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
SWG+ WGM+GYIK+ KD++
Sbjct: 301 SWGSEWGMEGYIKIAKDRD 319
Score = 27.3 bits (59), Expect(2) = e-138
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 1008 EHHCGIAHMASYPVV 1052
++HCG+A ASYPVV
Sbjct: 319 DNHCGLATAASYPVV 333
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 431 bits (1107), Expect(2) = e-121
Identities = 201/319 (63%), Positives = 242/319 (75%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M P LLA CLG+ SAAP H+ SLDA W +WK H+K Y +N+EG++RA+WE N KMI+
Sbjct: 1 MTPVFLLATLCLGVVSAAPAHNPSLDAVWEEWKTKHKKTYNMNDEGQKRAVWENNKKMID 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG-KVFLDAGSALTPHSVD 414
HN ++ +GKH F++ MNAFGD+TN EFR+ M GFQ QK K KVF + P SVD
Sbjct: 61 LHNEDYLKGKHGFSLEMNAFGDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPKSVD 120
Query: 415 WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 594
WR+ GYVT VK+QG CGSCWAFSA G+LEGQMFRKT KL+ LS QNLVDCSW +GN+GC+
Sbjct: 121 WRDHGYVTPVKDQGSCGSCWAFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGNQGCD 180
Query: 595 GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
GGL D AFQY+KDNGGLD+ SYPY +G+C+Y P++SAA TG+V++ E ALMKAV
Sbjct: 181 GGLPDLAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKNSAATVTGFVNVQSSEDALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQN 954
ATVGPISVGID H+SFQFY G+Y+EP CSS LDH VLVVGYG E KYWLV+N
Sbjct: 241 ATVGPISVGIDTKHKSFQFYKEGMYYEPDCSSTVLDHAVLVVGYGEES--DGRKYWLVKN 298
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
SWG WGM+GYIKM KD+N
Sbjct: 299 SWGRDWGMNGYIKMAKDRN 317
Score = 24.3 bits (51), Expect(2) = e-121
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
++CGIA ASYPVV
Sbjct: 318 NNCGIASDASYPVV 331
>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
Length = 330
Score = 430 bits (1106), Expect = e-121
Identities = 199/328 (60%), Positives = 239/328 (72%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M P LLA CLG+ SAAP HD SLDA W +WK HRK Y +NEE ++RA+WE NMKMI
Sbjct: 1 MTPVFLLATLCLGVVSAAPAHDPSLDAVWEEWKTKHRKTYNMNEEAQKRAVWENNMKMIG 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN ++ +GKH F + MNAFGD+TN EFR+ M GFQ+ HK+ +F + P SVDW
Sbjct: 61 LHNEDYLKGKHGFNLEMNAFGDLTNTEFRELMTGFQSMGHKEMTIFQEPLLGDVPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
R+ GYVT VK+QGHCGSCWAFSA G+LEGQ+FRKT KL+ LSEQNL+DCSW GN GCNG
Sbjct: 121 RDHGYVTPVKDQGHCGSCWAFSAVGSLEGQIFRKTGKLVPLSEQNLMDCSWSYGNVGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLM+ AFQY+K+N GLD+ ESY Y DG C+Y P+ SA N TG+V +P E ALM AVA
Sbjct: 181 GLMELAFQYVKENRGLDTRESYAYEAWDGPCRYDPKYSAVNITGFVKVPLSEDALMNAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
+VGP+SVGID H SF+FY G Y+EP CSS +LDH VLVVGYG E KYWLV+NS
Sbjct: 241 SVGPVSVGIDTHHHSFRFYRGGTYYEPDCSSTNLDHAVLVVGYGEES--DGRKYWLVKNS 298
Query: 958 WGNTWGMDGYIKMTKDQNTTVESPTWPV 1041
WG WGMDGYIKM KD++ T+ +
Sbjct: 299 WGEDWGMDGYIKMAKDRDNNCGIATYAI 326
>ref|NP_835199.1| testin-2 precursor [Mus musculus].
Length = 333
Score = 407 bits (1045), Expect(2) = e-115
Identities = 194/315 (61%), Positives = 226/315 (71%), Gaps = 1/315 (0%)
Frame = +1
Query: 70 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNW 249
L LA CL I S AP D SLD W +W+ H K Y +NEE RRA+WEKN KMIE HNW
Sbjct: 5 LFLAILCLEIDSTAPTLDPSLDVQWNEWRTKHGKAYNVNEERLRRAVWEKNFKMIELHNW 64
Query: 250 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG 429
E+ +GKH FTM MNAFGD+TN EF K M GF+ QK K+ VF D P VDWR G
Sbjct: 65 EYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLG 124
Query: 430 YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMD 609
YVT VKNQG+C S WAFSATG+LEGQMF+KT +L+ LSEQNL+DC C+GG M
Sbjct: 125 YVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQ 184
Query: 610 NAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGP 789
NAFQY+KDNGGL +EESYPY G C+Y ++SAAN +V IP +E+ALMKAVA VGP
Sbjct: 185 NAFQYVKDNGGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGP 244
Query: 790 ISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQNSWGN 966
ISV +DASH+SFQFY +GIY+EPQC L+H VLVVGYG EG S+ N YWLV+NSWG
Sbjct: 245 ISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGE 304
Query: 967 TWGMDGYIKMTKDQN 1011
WGM GYIK+ KD N
Sbjct: 305 EWGMKGYIKIAKDWN 319
Score = 26.9 bits (58), Expect(2) = e-115
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA +A+YP+V
Sbjct: 320 NHCGIATLATYPIV 333
>ref|NP_067420.1| cathepsin 6 [Mus musculus].
Length = 334
Score = 371 bits (952), Expect = e-103
Identities = 171/320 (53%), Positives = 227/320 (70%), Gaps = 2/320 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M+P+L LA CLG+ S A D +L+A+W+ WK + K Y + EEG RRAIWE+NM+MI+
Sbjct: 1 MSPTLFLAILCLGVGSGALALDPNLNAEWHDWKKQYEKSYTMEEEGLRRAIWEENMRMIK 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLD-AGSALTPHSVD 414
HNWE+ GK++FT+ MN FGD+T EE RK MN F HKK K+ A + P VD
Sbjct: 61 LHNWENSLGKNNFTLKMNEFGDLTPEELRKMMNNFPIWSHKKRKIIRKRAVGDVLPKFVD 120
Query: 415 WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 594
WR+KGYVT V+ Q C SCWAF+ GA+EGQMF+KT KL LS QNLVDC+ +GN+GC
Sbjct: 121 WRKKGYVTRVRRQKFCNSCWAFAVNGAIEGQMFKKTGKLTPLSVQNLVDCTKTQGNDGCQ 180
Query: 595 GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
G A++Y+ +NGGL++E +YPY GK+G C+Y P++S A TG+V +P+ E LM+AV
Sbjct: 181 WGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCRYNPKNSKAEITGFVSLPESEDILMEAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQ 951
AT+GPIS +DAS F FY GIY +P CS+ ++H VLVVGYG EG ++ NKYWL++
Sbjct: 241 ATIGPISAAVDASFNRFSFYDGGIYHQPNCSNNTVNHAVLVVGYGTEGNETDGNKYWLIK 300
Query: 952 NSWGNTWGMDGYIKMTKDQN 1011
NSWG WG+ GY+K+ +DQN
Sbjct: 301 NSWGRRWGIGGYMKIIRDQN 320
>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
Length = 334
Score = 364 bits (935), Expect = e-101
Identities = 175/317 (55%), Positives = 222/317 (70%), Gaps = 3/317 (0%)
Frame = +1
Query: 70 LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNW 249
+ +A LG+AS P D SLDA+W WK + K Y L EE +R +WE+ +KMI+ HN
Sbjct: 5 VFIAFLYLGVASGVPVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNR 64
Query: 250 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFL--DAGSALTPHSVDWRE 423
E+ GK+ FTM MN FGD T+EEFRK M H++GK + +AGS L P VDWR+
Sbjct: 65 ENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSIL-PKFVDWRK 123
Query: 424 KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
KGYVT V+ QG C +CWAF+ TGA+E Q +T KL LS QNLVDCS P+GN GC GG
Sbjct: 124 KGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGD 183
Query: 604 MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATV 783
NAFQY+ NGGL+SE +YPY GKDG C+Y P++S A TG+V +P+ E LM AVAT+
Sbjct: 184 TYNAFQYVLHNGGLESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDILMAAVATI 243
Query: 784 GPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQNSW 960
GPI+ GIDASHESF+ Y GIY EP CSS+ + HGVLVVGYG +G ++ N YWL++NSW
Sbjct: 244 GPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIKNSW 303
Query: 961 GNTWGMDGYIKMTKDQN 1011
G WG+ GY+K+ KD+N
Sbjct: 304 GKRWGIRGYMKLAKDKN 320
>ref|NP_062414.3| cathepsin 8 [Mus musculus].
Length = 333
Score = 363 bits (933), Expect(2) = e-101
Identities = 172/319 (53%), Positives = 223/319 (69%), Gaps = 1/319 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M P++LLA CLG+A D SLD++W +WK K Y + EEG++RA+WE+NMK+++
Sbjct: 1 MGPAVLLAILCLGVAEVTQSSDPSLDSEWQEWKRKFNKNYSMEEEGQKRAVWEENMKLVK 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
+HN E+ QGK +FTM +NAFGDMT EE+RK + +K K + P VDW
Sbjct: 61 QHNIEYDQGKKNFTMDVNAFGDMTGEEYRKMLTDIPVPNFRKKKSIHQPIAGYLPKFVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
R++G VT VKNQG C SCWAFSA GA+EGQMFRKT KL+ LS QNLVDCS EGN GC
Sbjct: 121 RKRGCVTPVKNQGTCNSCWAFSAAGAIEGQMFRKTGKLVPLSTQNLVDCSRLEGNFGCFK 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
G A +Y+ N GL++E +YPY G DG C+Y P+ SAA T + + EK LM+AVA
Sbjct: 181 GSTFLALKYVWKNRGLEAESTYPYKGTDGHCRYHPERSAARITSFSFVSNSEKDLMRAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
T+GPISVGIDA H+SF+ Y GIY+EP+CSS ++H VLVVGYG EG S+ NKYWL++N
Sbjct: 241 TIGPISVGIDARHKSFRLYREGIYYEPKCSSNIINHSVLVVGYGYEGKESDGNKYWLIKN 300
Query: 955 SWGNTWGMDGYIKMTKDQN 1011
S G WGM+GY+K+ + +N
Sbjct: 301 SHGEQWGMNGYMKLARGRN 319
Score = 22.7 bits (47), Expect(2) = e-101
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA A YP V
Sbjct: 320 NHCGIASYAVYPRV 333
>ref|NP_071721.2| cathepsin M precursor [Mus musculus].
Length = 333
Score = 363 bits (931), Expect = e-100
Identities = 176/318 (55%), Positives = 218/318 (68%), Gaps = 1/318 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M ++ LA CLG+A +P D LD +W KWK + K Y L EEG++RA+WE NMK I+
Sbjct: 1 MTSAIFLAMLCLGMALPSPAPDPILDVEWQKWKIKYGKAYSLEEEGQKRAVWEDNMKKIK 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ GKH FTM MNAFGDMT EEFRK M KKGK S P ++W
Sbjct: 61 LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFINW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
+++GYVT V+ QG C SCWAFS TGA+EGQMFRKT +LI LS QNLVDCS P+GN GC
Sbjct: 121 KKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYL 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
G A Y+ +NGGL+SE +YPY KDGSC+Y P++S AN TG+ +PK E ALM AVA
Sbjct: 181 GNTYLALHYVMENGGLESEATYPYEEKDGSCRYSPENSTANITGFEFVPKNEDALMNAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
++GPISV IDA H SF FY GIY+EP CSS + H +L+VGYG G S+ KYWLV+N
Sbjct: 241 SIGPISVAIDARHASFLFYKRGIYYEPNCSSSVVTHSMLLVGYGFTGRESDGRKYWLVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQ 1008
S G WG GY+K+++D+
Sbjct: 301 SMGTQWGNKGYMKISRDK 318
>ref|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus].
Length = 333
Score = 357 bits (916), Expect = 9e-99
Identities = 174/318 (54%), Positives = 218/318 (68%), Gaps = 1/318 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M P++ LA L +AS++P D LDA+W KWK H K Y L EE ++RA+WE+NMK I+
Sbjct: 1 MTPAVFLAILWLVMASSSPSPDPILDAEWQKWKIKHGKPYSLEEEEQKRAVWEENMKKIK 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ GKH FTM MNAFGDMT EEFRK M KKGK S P ++W
Sbjct: 61 LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKHLSVNLPKFINW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
+++GYVT V+ QG C SCWA S TGA+EGQMF+KT +LI LS QNLVDCS P+GN GC
Sbjct: 121 KKRGYVTPVRTQGRCNSCWAISVTGAIEGQMFQKTGQLIPLSVQNLVDCSRPQGNRGCYV 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
G A +Y+ +NGGL+SE +YPY K+GSC+Y P++S A+ TG+ +P+ E ALM AVA
Sbjct: 181 GNTYRALKYVVENGGLESEATYPYEEKEGSCRYNPENSTASITGFDFVPENEDALMNAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
T+GPISV IDA HESF FY GIY EP CSS + H +L+VGYG G S KYW+V+N
Sbjct: 241 TIGPISVAIDARHESFLFYKRGIYHEPNCSSSVVTHAMLLVGYGFVGNESEGRKYWIVKN 300
Query: 955 SWGNTWGMDGYIKMTKDQ 1008
S G WG GY+K+ +DQ
Sbjct: 301 SMGTKWGSKGYMKIARDQ 318
>ref|NP_036137.1| cathepsin J [Mus musculus].
Length = 333
Score = 353 bits (905), Expect(2) = 2e-98
Identities = 168/324 (51%), Positives = 220/324 (67%), Gaps = 6/324 (1%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M P++LL C G+AS A HD LDA+W WK + K Y EE RRA+WE+NM+MI+
Sbjct: 1 MTPTVLLLILCFGVASGAQAHDPKLDAEWKDWKTKYAKSYS-PEEALRRAVWEENMRMIK 59
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF-----QNQKHKKGKVFLDAGSALTP 402
HN E+ GK++FTM MN FGD T+EEFRK+++ H + V + P
Sbjct: 60 LHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGL-----P 114
Query: 403 HSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGN 582
DWRE+GYVT V+NQG CGSCWAF+A GA+EGQMF KT L LS QNL+DCS GN
Sbjct: 115 DYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGN 174
Query: 583 EGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKAL 762
+GC G AF+Y+ N GL++E +YPY GKDG C+Y+ ++++AN T YV++P E L
Sbjct: 175 KGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLPPNELYL 234
Query: 763 MKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEG-AHSNNKY 939
AVA++GP+S IDASH+SF+FY+ GIY+EP CSS ++H VLVVGYG EG N Y
Sbjct: 235 WVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNY 294
Query: 940 WLVQNSWGNTWGMDGYIKMTKDQN 1011
WL++NSWG WGM+GY+++ KD N
Sbjct: 295 WLIKNSWGEEWGMNGYMQIAKDHN 318
Score = 25.8 bits (55), Expect(2) = 2e-98
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 1011 HHCGIAHMASYP 1046
+HCGIA +ASYP
Sbjct: 319 NHCGIASLASYP 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,983,693
Number of extensions: 1058138
Number of successful extensions: 3031
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2962
Number of HSP's successfully gapped: 41
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa]. 676 0.0
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 532 e-152
Alignment gi|NP_999467.1| cathepsin K precursor [Sus scrofa]. 318 3e-87
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 294 7e-80
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 294 7e-80
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 216 6e-57
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 183 1e-46
Alignment gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]. 135 4e-32
Alignment gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s... 121 8e-28
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 104 1e-22
>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
Length = 332
Score = 676 bits (1745), Expect(2) = 0.0
Identities = 317/318 (99%), Positives = 318/318 (100%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE
Sbjct: 1 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW
Sbjct: 61 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG
Sbjct: 121 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA
Sbjct: 181 GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 240
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLV+NS
Sbjct: 241 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVKNS 300
Query: 958 WGNTWGMDGYIKMTKDQN 1011
WGNTWGMDGYIKMTKDQN
Sbjct: 301 WGNTWGMDGYIKMTKDQN 318
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGIA MASYPVV
Sbjct: 319 NHCGIATMASYPVV 332
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 532 bits (1370), Expect(2) = e-152
Identities = 248/320 (77%), Positives = 279/320 (87%), Gaps = 2/320 (0%)
Frame = +1
Query: 58 MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
M PSL L A CLGIASAAP+ D +LDADWYKWKATH +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1 MKPSLFLTALCLGIASAAPKLDQNLDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 238 RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
HN E+ QGKH F+MAMNAFGDMTNEEFR+ MNGFQNQKHKKGKVF ++ P SVDW
Sbjct: 61 LHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVLEVPKSVDW 120
Query: 418 REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
REKGYVTAVKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121 REKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 598 GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
GLMDNAFQY+KDNGGLD+EESYPY G++ SC YKP+ SAANDTG+VDIP++EKALMKAV
Sbjct: 181 GLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAV 240
Query: 775 ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQ 951
ATVGPISV IDA H SFQFY +GIY++P CSS+DLDHGVLVVGYG EG SN +K+W+V+
Sbjct: 241 ATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVK 300
Query: 952 NSWGNTWGMDGYIKMTKDQN 1011
NSWG WG +GY+KM KDQN
Sbjct: 301 NSWGPEWGWNGYVKMAKDQN 320
Score = 24.6 bits (52), Expect(2) = e-152
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 1011 HHCGIAHMASYPVV 1052
+HCGI+ ASYP V
Sbjct: 321 NHCGISTAASYPTV 334
>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
Length = 330
Score = 318 bits (815), Expect = 3e-87
Identities = 157/318 (49%), Positives = 209/318 (65%), Gaps = 5/318 (1%)
Frame = +1
Query: 73 LLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNW 249
L L + S+A + LD W WK T+RK Y +E RR IWEKN+K I HN
Sbjct: 4 LKVVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNL 63
Query: 250 EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWR 420
E G H++ +AMN GDMT+EE + M G + + +++ TP S+D+R
Sbjct: 64 EASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYR 123
Query: 421 EKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGG 600
+KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC N+GC GG
Sbjct: 124 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGG 181
Query: 601 LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVA 777
M NAFQY++ N G+DSE++YPY G+D +C Y P AA GY +IP+ EKAL +AVA
Sbjct: 182 YMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVA 241
Query: 778 TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
VGP+SV IDAS SFQFYS G+Y++ C+S++L+H VL VGYG++ K+W+++NS
Sbjct: 242 RVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ---KGKKHWIIKNS 298
Query: 958 WGNTWGMDGYIKMTKDQN 1011
WG WG GYI M +++N
Sbjct: 299 WGENWGNKGYILMARNKN 316
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 294 bits (752), Expect = 7e-80
Identities = 157/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
Frame = +1
Query: 100 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
A A D +LD W WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 14 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73
Query: 277 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
+ MN GDMT+EE M+ + + + + + P S+DWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133
Query: 454 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
G CGSCWAFSA GALE Q+ KT +L+SLS QNLVDCS + N+GCNGG M AFQYI
Sbjct: 134 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193
Query: 631 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
DN G+DSE SYPY DG CKY ++ AA + Y ++P E AL +AVA GP+SV ID
Sbjct: 194 DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAID 253
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
A H SF FY +G+Y++P C +++++HGVLVVGYG + N K YWLV+NSWG +G G
Sbjct: 254 AKHSSFFFYRSGVYYDPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDGG 308
Query: 985 YIKMTKDQNTTVESPTWP 1038
YI+M ++ +P
Sbjct: 309 YIRMARNSENHCGIANYP 326
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 294 bits (752), Expect = 7e-80
Identities = 157/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
Frame = +1
Query: 100 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
A A D +LD W WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 14 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73
Query: 277 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
+ MN GDMT+EE M+ + + + + + P S+DWREKG VT VK Q
Sbjct: 74 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133
Query: 454 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
G CGSCWAFSA GALE Q+ KT +L+SLS QNLVDCS + N+GCNGG M AFQYI
Sbjct: 134 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193
Query: 631 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
DN G+DSE SYPY DG CKY ++ AA + Y ++P E AL +AVA GP+SV ID
Sbjct: 194 DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAID 253
Query: 808 ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
A H SF FY +G+Y++P C +++++HGVLVVGYG + N K YWLV+NSWG +G G
Sbjct: 254 AKHSSFFFYRSGVYYDPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDGG 308
Query: 985 YIKMTKDQNTTVESPTWP 1038
YI+M ++ +P
Sbjct: 309 YIRMARNSENHCGIANYP 326
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 216 bits (549), Expect(2) = 6e-57
Identities = 115/291 (39%), Positives = 165/291 (56%), Gaps = 4/291 (1%)
Frame = +1
Query: 151 WKATHRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT 330
W H+K Y L E R ++ N + I HN G H+F + +N F DM+ +E R
Sbjct: 38 WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHN----AGNHTFKLGLNQFSDMSFDEIRHK 93
Query: 331 MNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQ 507
+ Q K G+ P S+DWR+KG +V+ VKNQG CGSCW FS TGALE
Sbjct: 94 YLWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESA 153
Query: 508 MFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGS 687
+ T K++SL+EQ LVDC+ N GC GGL AF+YI+ N G+ E++YPY G+D
Sbjct: 154 VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 213
Query: 688 CKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC 864
CK++P + A +I E+A+++AVA P+S + +++ F Y GIY C
Sbjct: 214 CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSC 272
Query: 865 --SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
+ + ++H VL VGYG E + YW+V+NSWG WGM+GY + + +N
Sbjct: 273 HKTPDKVNHAVLAVGYGEE---NGIPYWIVKNSWGPQWGMNGYFLIERGKN 320
Score = 23.9 bits (50), Expect(2) = 6e-57
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 999 QRSEHHCGIAHMASYPV 1049
+R ++ CG+A ASYP+
Sbjct: 316 ERGKNMCGLAACASYPI 332
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 183 bits (465), Expect = 1e-46
Identities = 109/280 (38%), Positives = 152/280 (54%), Gaps = 4/280 (1%)
Frame = +1
Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 333
T+ + Y EE R R +++ NM ++ + + F D+T EEFR +
Sbjct: 199 TYNRTYDTKEEARWRMSVFANNMVRAQKIQ---ALDTGTARYGVTKFSDLTEEEFRTIYL 255
Query: 334 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 513
N ++ + + S+L P DWR+KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 256 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 315
Query: 514 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 693
K L+SLSEQ L+DC + ++GC GGL NA+ IK GGL++EE Y Y G +C
Sbjct: 316 LKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLGGLETEEDYSYRGHLQTCS 373
Query: 694 YKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCS 867
+ + + V++ + E+ L +A GPISV I+A QFY GI P CS
Sbjct: 374 FNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGISHPLRPLCS 431
Query: 868 SEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
+DH VL+VGYG A +W ++NSWG WG +GY
Sbjct: 432 PWLIDHAVLLVGYGNRSA---TPFWAIKNSWGTDWGEEGY 468
>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
Length = 367
Score = 135 bits (340), Expect = 4e-32
Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 17/293 (5%)
Frame = +1
Query: 187 EEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG 366
E RR I+ +N+ +R E G F + F D+T EEF + ++G K
Sbjct: 58 EHARRLDIFAQNLAKAQRLQ-EEDLGTAEF--GVTPFSDLTEEEFGQ-LHGHHWGAGKAP 113
Query: 367 KVFLDAGSA----LTPHSVDWREK-GYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKL 531
+ + GS P S DWR+K G ++A+K+Q C CWA +A +E Q K +
Sbjct: 114 SMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQA 173
Query: 532 ISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFG--KDGSCKYKPQ 705
+ LS Q ++DC GCNGG + +AF + + GL SE+ YPY G K C K
Sbjct: 174 VQLSVQQVLDCD--RCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQH 231
Query: 706 SSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCSSEDL 879
A ++ + E+++ + +AT GPI+V I+A Q Y G+ C +
Sbjct: 232 RKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAG--LLQQYKRGVIRATPATCDPHLV 289
Query: 880 DHGVLVVGYG----VEGAH----SNNKYWLVQNSWGNTWGMDGYIKMTKDQNT 1014
+H VL+VG+G VEG + YW+++NSWG WG +GY ++ + NT
Sbjct: 290 NHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNT 342
>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
Length = 411
Score = 121 bits (303), Expect = 8e-28
Identities = 71/181 (39%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Frame = +1
Query: 457 HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KD 633
HCG CWAFS A+E K L LS Q ++DCS+ N GCNGG NA ++ K
Sbjct: 218 HCGGCWAFSVVSAVESAYAIKGQPLEVLSVQQVIDCSY--NNYGCNGGSTLNALYWLNKT 275
Query: 634 NGGLDSEESYPYFGKDGSCKYKPQSSAA---NDTGYVDIPKQEKALMKAVATVGPISVGI 804
+ S+ YP+ ++G C Y S + D D QE + K + T+GP+ V +
Sbjct: 276 QVKVVSDSEYPFKAQNGLCHYFSCSHSGVSIKDYSAYDFSGQEDEMAKTLLTLGPLIVIV 335
Query: 805 DASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDG 984
DA S+Q Y GI + CSS + +H VLV G+ G + YW+V+NSWG+ WG+DG
Sbjct: 336 DA--VSWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG---STPYWIVRNSWGSAWGIDG 389
Query: 985 Y 987
Y
Sbjct: 390 Y 390
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 104 bits (259), Expect = 1e-22
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 15/216 (6%)
Frame = +1
Query: 400 PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
P S DWR +VT V+NQ CGSC++F++ G +E ++ T+ + LS Q +V C
Sbjct: 232 PASWDWRNVRGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 565 SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 744
S + +GC GG + GL E +PY G D C K + Y +
Sbjct: 292 S--QYAQGCAGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVG 349
Query: 745 KQ----EKALMKA-VATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVL 894
+ALMK + GP++V + ++ F Y GIY +P E +H VL
Sbjct: 350 GFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYRKGIYHHTGLRDPFNPFELTNHAVL 408
Query: 895 VVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
+VGYG + A S YW+V+NSWG +WG DGY ++ +
Sbjct: 409 LVGYGTDLA-SGMDYWIVKNSWGTSWGEDGYFRIRR 443
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,604,573
Number of extensions: 779686
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 18
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002479
(1106 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 448 e-123
>Sscrofa_Chr10
|| Length = 79102373
Score = 448 bits (226), Expect = e-123
Identities = 229/230 (99%)
Strand = Plus / Minus
Query: 450 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911743 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 31911684
Query: 510 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911683 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 31911624
Query: 570 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911623 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 31911564
Query: 630 ggacaacggaggcctggactcagaggaatcctatccatactttggaaagg 679
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911563 ggacaatggaggcctggactcagaggaatcctatccatactttggaaagg 31911514
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 674 gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910761 gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 31910702
Query: 734 tggatattccaaagcaggagaaagcgcttatgaaggccgtggcaactgtggggcccatct 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910701 tggatattccaaagcaggagaaagcgcttatgaaggccgtggcaactgtggggcccatct 31910642
Query: 794 ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 842
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910641 ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 31910593
Score = 323 bits (163), Expect = 1e-85
Identities = 211/227 (92%)
Strand = Plus / Plus
Query: 450 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 509
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 76999957 tcagggtcagtgtggttcttgttgggcttttagtgccaccggcgcccttgaaggacagat 77000016
Query: 510 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 569
||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 77000017 gttccggaaaaccggcaagcttgtttcactgagtgagcagaacctggtggactgttctcg 77000076
Query: 570 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 629
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 77000077 gcctcaaggcaatcagggctgcaatggtggcctaatggataatgccttccagtacgtgaa 77000136
Query: 630 ggacaacggaggcctggactcagaggaatcctatccatactttggaa 676
|||||| |||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 77000137 ggacaatggaggcctggacacagaggaatcctatccgtaccttggaa 77000183
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 306 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912281 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 31912222
Query: 366 aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912221 aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 31912162
Query: 426 aggctatgtaactgctgtgaagaatcagg 454
|||||||||||||||||||||||||||||
Sbjct: 31912161 aggctatgtaactgctgtgaagaatcagg 31912133
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 45 agatctttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912940 agatctttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 31912881
Query: 105 agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912880 agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 31912821
Query: 165 caggaaactctatggcttg 183
|||||||||||||||||||
Sbjct: 31912820 caggaaactctatggcttg 31912802
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 183 gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912505 gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 31912446
Query: 243 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912445 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 31912386
Query: 303 catg 306
||||
Sbjct: 31912385 catg 31912382
Score = 240 bits (121), Expect = 1e-60
Identities = 150/156 (96%), Gaps = 3/156 (1%)
Strand = Plus / Minus
Query: 954 cagctggggtaatacttggggcatggatggctacataaagatgaccaaagatcagaac-a 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 31907802 cagctggggtaatacttggggcatggatggctacataaagatgaccaaagatcagaacaa 31907743
Query: 1013 ccactgtggaatcgcccacatggccagttaccctgtggtctaaatctcnaagactggatt 1072
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 31907742 ccactgtggaatcgccaccatggccagttaccctgtggtctaaatctcaaagactggatt 31907683
Query: 1073 -agaacagaatagcccgaggac-aattctgtcttca 1106
||||||||||||||||||||| |||||||||||||
Sbjct: 31907682 aagaacagaatagcccgaggacaaattctgtcttca 31907647
Score = 212 bits (107), Expect = 3e-52
Identities = 115/118 (97%)
Strand = Plus / Minus
Query: 839 caggcatttattttgaaccacagtgcagcagcgaagacctggatcatggcgttctggtgg 898
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31909183 caggcatttattttgaaccacagtgcagcagcgaagatctggatcatggcgttctggtgg 31909124
Query: 899 tcggctatggcgttgaaggagcacactcaaataataagtattggcttgtncagaacag 956
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 31909123 tcggctatggcgttgaaggagcacactcaaataataagtattggcttgtcaagaacag 31909066
Score = 165 bits (83), Expect = 6e-38
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 50 tttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctcagctg 109
|||||| |||||| ||||||||| ||||| | ||| ||||||||||||||||||||||||
Sbjct: 76999075 tttgaaacatgaaaccttcactcttcctgaccgccctttgcttgggaatagcctcagctg 76999134
Query: 110 ctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacacacagga 169
|||||| || |||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 76999135 ctccaaaacttgatcaaaatttagatgcagactggtacaagtggaaggcaacacacggga 76999194
Query: 170 aactctatggc 180
||||||||||
Sbjct: 76999195 gactctatggc 76999205
Score = 159 bits (80), Expect = 4e-36
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 183 gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 242
||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct: 76999489 gaatgaagaaggatggcggagagccgtatgggagaagaatatgaaaatgattgaactgca 76999548
Query: 243 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 302
|||| |||| |||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 76999549 caatcaggaatacagccaagggaaacatggcttcagcatggccatgaatgcctttggtga 76999608
Query: 303 catg 306
||||
Sbjct: 76999609 catg 76999612
Score = 99.6 bits (50), Expect = 3e-18
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 697 aagccccagagttctgctgccaacgacactggttacgtggatattccaaagcaggagaaa 756
|||||| || ||||||||||||||||||| || | |||||| || || ||| ||||||
Sbjct: 77000901 aagcccgagtgttctgctgccaacgacaccggcttcgtggacatccctcagcgggagaag 77000960
Query: 757 gcgcttatgaaggccgtggcaactgtggggcccatctctgttggtatagatgcaagccat 816
|| ||||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 77000961 gcccttatgaaggcagtcgcaactgtggggcccatctctgttgctattgatgcgggccat 77001020
Query: 817 gaatccttccagtt 830
||| ||||||||
Sbjct: 77001021 tcatctttccagtt 77001034
Score = 93.7 bits (47), Expect = 2e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 306 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 365
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct: 76999715 gaccaatgaagaattcaggcaggtgatgaatggctttcaaaaccagaagcacaagaaggg 76999774
Query: 366 aaaagtattcc 376
||||| ||||
Sbjct: 76999775 gaaagtgttcc 76999785
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1 cttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31913473 cttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 31913428
Score = 87.7 bits (44), Expect = 1e-14
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 839 caggcatttattttgaaccacagtgcagcagcgaagacctggatcatggcgttctggtgg 898
|||||||||||| ||| ||| | ||||||||| |||||||||||||||| ||| ||||||
Sbjct: 77001763 caggcatttattatgatccagactgcagcagcaaagacctggatcatggtgttttggtgg 77001822
Query: 899 tcggctatggcgttgaagga 918
| ||||||||| ||||||||
Sbjct: 77001823 ttggctatggctttgaagga 77001842
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,176,353
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 15
Length of query: 1106
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1085
Effective length of database: 2,808,413,156
Effective search space: 3047128274260
Effective search space used: 3047128274260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)