Animal-Genome cDNA 20110601C-002479


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001077155.1| cathepsin L1 [Bos taurus].                        504   e-144
Alignment   gi|NP_776457.1| cathepsin L2 precursor [Bos taurus].                 506   e-144
Alignment   gi|NP_001029607.1| cathepsin K [Bos taurus].                         318   7e-87
Alignment   gi|NP_001028787.1| cathepsin S precursor [Bos taurus].               302   3e-82
Alignment   gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].           214   7e-56
Alignment   gi|NP_001068884.1| cathepsin F [Bos taurus].                         171   1e-42
Alignment   gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B...   138   1e-32
Alignment   gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].                 138   1e-32
Alignment   gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].              108   8e-24
Alignment   gi|NP_776456.1| cathepsin B precursor [Bos taurus].                   87   2e-17

>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
          Length = 333

 Score =  504 bits (1298), Expect(2) = e-144
 Identities = 239/319 (74%), Positives = 267/319 (83%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNPSLLL A CLGIASAAP+ DHSLD  W  WKA HRK Y LNEEG R+A+W+KNMKMIE
Sbjct: 1    MNPSLLLTALCLGIASAAPKFDHSLDTQWKLWKAAHRKPYDLNEEGWRKAVWKKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ QGKHSF+MAMNAFGDMTNEEFR TMNGFQ QK+KKGK F +   A  P SVDW
Sbjct: 61   LHNQEYSQGKHSFSMAMNAFGDMTNEEFRHTMNGFQRQKNKKGKEFHETIFASIPPSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVT VKNQG CGSCWAFSATGALEGQMF+KT KL+SLSEQNLVDCS PEGN GC+G
Sbjct: 121  REKGYVTPVKNQGKCGSCWAFSATGALEGQMFQKTGKLVSLSEQNLVDCSQPEGNRGCHG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            G +DNAFQY+ D GGLDSEESYPY G  G+C Y P +SAAN+TG+VD+PKQEKALMKAVA
Sbjct: 181  GFIDNAFQYVLDVGGLDSEESYPYTGLVGTCLYNPNNSAANETGFVDLPKQEKALMKAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
             +GPISV +DA + SFQFY +GIY+EP CSSE +DH VLVVGYG EGA S +NKYWLV+N
Sbjct: 241  NLGPISVAVDAHNPSFQFYKSGIYYEPNCSSESVDHAVLVVGYGFEGADSDDNKYWLVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            SWG  WGM+GYIKM KD+N
Sbjct: 301  SWGEHWGMNGYIKMAKDRN 319



 Score = 28.1 bits (61), Expect(2) = e-144
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA MASYP V
Sbjct: 320  NHCGIATMASYPTV 333


>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
          Length = 334

 Score =  506 bits (1302), Expect(2) = e-144
 Identities = 236/320 (73%), Positives = 269/320 (84%), Gaps = 2/320 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNPS  L   CLG+ASAAP+ D +LDA W++WKATHR+LYG+NEE  RRA+WEKN K+I+
Sbjct: 1    MNPSFFLTVLCLGVASAAPKLDPNLDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIID 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ +GKH+F MAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F +      P SVDW
Sbjct: 61   LHNQEYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLVDVPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
             +KGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS  +GN+GCNG
Sbjct: 121  TKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
            GLMDNAFQYIKDNGGLDSEESYPY   D  SC YKP+ SAANDTG+VDIP++EKALMKAV
Sbjct: 181  GLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQ 951
            ATVGPISV IDA H SFQFY +GIY++P CS +DLDHGVLVVGYG EG  S NNK+W+V+
Sbjct: 241  ATVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYGFEGTDSNNNKFWIVK 300

Query: 952  NSWGNTWGMDGYIKMTKDQN 1011
            NSWG  WG +GY+KM KDQN
Sbjct: 301  NSWGPEWGWNGYVKMAKDQN 320



 Score = 25.8 bits (55), Expect(2) = e-144
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA  ASYP V
Sbjct: 321  NHCGIATAASYPTV 334


>ref|NP_001029607.1| cathepsin K [Bos taurus].
          Length = 334

 Score =  318 bits (814), Expect = 7e-87
 Identities = 158/317 (49%), Positives = 208/317 (65%), Gaps = 5/317 (1%)
 Frame = +1

Query: 76   LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWE 252
            L    L + S A   +  LD  W  WK T+RK Y    +E  RR IWEKN+K I  HN E
Sbjct: 9    LTVLLLPVVSFALYPEEILDTQWELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLE 68

Query: 253  HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 423
               G H++ +AMN  GDMT+EE  + M G +   ++      +++       P SVD+R+
Sbjct: 69   ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRK 128

Query: 424  KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
            KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC     N+GC GG 
Sbjct: 129  KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 186

Query: 604  MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVAT 780
            M NAFQY++ N G+DSE++YPY G+D +C Y P   AA   GY +IP+  EKAL +AVA 
Sbjct: 187  MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 246

Query: 781  VGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSW 960
            VGPISV IDAS  SFQFY  G+Y++  C+S++L+H VL VGYG++     NK+W+++NSW
Sbjct: 247  VGPISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSW 303

Query: 961  GNTWGMDGYIKMTKDQN 1011
            G  WG  GYI M +++N
Sbjct: 304  GENWGNKGYILMARNKN 320


>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
          Length = 331

 Score =  302 bits (774), Expect = 3e-82
 Identities = 161/328 (49%), Positives = 207/328 (63%), Gaps = 5/328 (1%)
 Frame = +1

Query: 70   LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHN 246
            L+ A      A A    D +LD  W  WK T+ K Y   NEE  RR IWEKN+K +  HN
Sbjct: 4    LVWALLLCSSAMAHVHRDPTLDHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHN 63

Query: 247  WEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWRE 423
             EH  G HS+ + MN  GDMT+EE    M+  +   +  +   +    +   P S+DWRE
Sbjct: 64   LEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWRE 123

Query: 424  KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGG 600
            KG VT VK QG CGSCWAFSA GALE Q+  KT KL+SLS QNLVDCS  + GN+GCNGG
Sbjct: 124  KGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGG 183

Query: 601  LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVA 777
             M  AFQYI DN G+DSE SYPY   DG C+Y  ++ AA  + Y+++P   E+AL +AVA
Sbjct: 184  FMTEAFQYIIDNNGIDSEASYPYKAMDGKCQYDVKNRAATCSRYIELPFGSEEALKEAVA 243

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYG-VEGAHSNNKYWLVQN 954
              GP+SVGIDASH SF  Y TG+Y++P C +++++HGVLVVGYG ++G      YWLV+N
Sbjct: 244  NKGPVSVGIDASHSSFFLYKTGVYYDPSC-TQNVNHGVLVVGYGNLDG----KDYWLVKN 298

Query: 955  SWGNTWGMDGYIKMTKDQNTTVESPTWP 1038
            SWG  +G  GYI+M ++         +P
Sbjct: 299  SWGLHFGDQGYIRMARNSGNHCGIANYP 326


>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
          Length = 335

 Score =  214 bits (545), Expect(2) = 7e-56
 Identities = 125/324 (38%), Positives = 177/324 (54%), Gaps = 8/324 (2%)
 Frame = +1

Query: 64   PSLLLAAFCLGIAS--AAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAIWEKNMKMI 234
            P L   A+ LG  +  AA    +SL+   ++ W   H+K Y   E   R   +  N++ I
Sbjct: 6    PLLCAGAWLLGAPACGAAELAANSLEKFHFQSWMVQHQKKYSSEEYYHRLQAFASNLREI 65

Query: 235  ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 414
              HN  +    H+F M +N F DM+ +E ++     + Q     K     G+   P S+D
Sbjct: 66   NAHNARN----HTFKMGLNQFSDMSFDELKRKYLWSEPQNCSATKSNYLRGTGPYPPSMD 121

Query: 415  WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 591
            WR+KG +VT VKNQG CGSCW FS TGALE  +   T KL  L+EQ LVDC+    N GC
Sbjct: 122  WRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGC 181

Query: 592  NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAA--NDTGYVDIPKQEKALM 765
             GGL   AF+YI+ N G+  E++YPY G+DG CKY+P  + A   D   + +   E+A++
Sbjct: 182  QGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIAFVKDVANITL-NDEEAMV 240

Query: 766  KAVATVGPISVGIDASHESFQFYSTGIYFEPQC--SSEDLDHGVLVVGYGVEGAHSNNKY 939
            +AVA   P+S   + + + F  Y  GIY    C  + + ++H VL VGYG E       Y
Sbjct: 241  EAVALHNPVSFAFEVTAD-FMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE---KGIPY 296

Query: 940  WLVQNSWGNTWGMDGYIKMTKDQN 1011
            W+V+NSWG  WGM GY  + + +N
Sbjct: 297  WIVKNSWGPNWGMKGYFLIERGKN 320



 Score = 22.3 bits (46), Expect(2) = 7e-56
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 999  QRSEHHCGIAHMASYPV 1049
            +R ++ CG+A  AS+P+
Sbjct: 316  ERGKNMCGLAACASFPI 332


>ref|NP_001068884.1| cathepsin F [Bos taurus].
          Length = 460

 Score =  171 bits (432), Expect = 1e-42
 Identities = 103/280 (36%), Positives = 147/280 (52%), Gaps = 4/280 (1%)
 Frame = +1

Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 333
           T+ + Y   EE   R +++  NM   ++     R    +    +  F D+T EEFR   +
Sbjct: 169 TYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRG---TARYGVTKFSDLTEEEFRTIYL 225

Query: 334 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 513
           N        +        + + P   DWR KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 226 NPLLKDAPGRNMRPAQPVTDVPPPQWDWRNKGAVTNVKDQGMCGSCWAFSVTGNVEGQWF 285

Query: 514 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 693
            K   L+SLSEQ L+DC   + ++ C GGL  NA+  I+  GGL++E+ Y Y G+  +C 
Sbjct: 286 LKRGTLLSLSEQELLDCD--KTDKACLGGLPSNAYSAIRTLGGLETEDDYSYRGRLQTCS 343

Query: 694 YKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCS 867
           +  + +       V++ K E+ L   +A  GP+S+ I+A     QFY  GI     P CS
Sbjct: 344 FSAEKAKVYINDSVELSKNEQKLAAWLAKNGPVSIAINAF--GMQFYRHGISHPLRPLCS 401

Query: 868 SEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
              +DH VL+VGYG   A     +W ++NSWG  WG +GY
Sbjct: 402 PWLIDHAVLLVGYGNRSA---IPFWAIKNSWGTDWGEEGY 438


>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
          Length = 375

 Score =  138 bits (347), Expect = 1e-32
 Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 4/208 (1%)
 Frame = +1

Query: 400  PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 579
            P   DWR+K  VT V+NQ  CG CWAFS  GA+E     K   L  LS Q ++DCS+   
Sbjct: 163  PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 220

Query: 580  NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPK 747
            N GCNGG   +A  ++ K    L  +  YP+  ++G C+Y   S S ++  GY   D   
Sbjct: 221  NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 280

Query: 748  QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS 927
            QE  + +A+  +GP+ V +DA   S+Q Y  GI  +  CSS + +H VLV G+   G   
Sbjct: 281  QEDKMAEALLALGPLIVVVDAM--SWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG--- 334

Query: 928  NNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
            +  YW+V+NSWG +WG+DGY+++    N
Sbjct: 335  SIPYWIVRNSWGTSWGIDGYVRVKMGGN 362


>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
          Length = 384

 Score =  138 bits (347), Expect = 1e-32
 Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 4/208 (1%)
 Frame = +1

Query: 400  PHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEG 579
            P   DWR+K  VT V+NQ  CG CWAFS  GA+E     K   L  LS Q ++DCS+   
Sbjct: 172  PLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVIDCSY--S 229

Query: 580  NEGCNGGLMDNAFQYI-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPK 747
            N GCNGG   +A  ++ K    L  +  YP+  ++G C+Y   S S ++  GY   D   
Sbjct: 230  NYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSAYDFSG 289

Query: 748  QEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS 927
            QE  + +A+  +GP+ V +DA   S+Q Y  GI  +  CSS + +H VLV G+   G   
Sbjct: 290  QEDKMAEALLALGPLIVVVDAM--SWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG--- 343

Query: 928  NNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
            +  YW+V+NSWG +WG+DGY+++    N
Sbjct: 344  SIPYWIVRNSWGTSWGIDGYVRVKMGGN 371


>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
          Length = 463

 Score =  108 bits (270), Expect = 8e-24
 Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
 Frame = +1

Query: 400  PHSVDWREK---GYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
            P S DWR      +VT V+NQG CGSC++F++ G +E ++   T+   +  LS Q +V C
Sbjct: 232  PTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291

Query: 565  SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 744
            S  +  +GC GG           + GL  E+ +PY G D  C+ K        + Y  + 
Sbjct: 292  S--QYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGCFRYYSSEYHYVG 349

Query: 745  KQ----EKALMKA-VATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVL 894
                   +ALMK  +   GP++V  +  ++ F  Y  G+Y      +P    E  +H VL
Sbjct: 350  GFYGGCNEALMKLELVHQGPMAVAFEV-YDDFLHYRKGVYHHTGLRDPFNPFELTNHAVL 408

Query: 895  VVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
            +VGYG + A S   YW+V+NSWG +WG +GY ++ +
Sbjct: 409  LVGYGTDAA-SGLDYWIVKNSWGTSWGENGYFRIRR 443


>ref|NP_776456.1| cathepsin B precursor [Bos taurus].
          Length = 335

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
 Frame = +1

Query: 382  AGSALTPHSVDWREKG----YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISL--S 543
            A   + P S D RE+      +  +++QG CGSCWAF A  A+  ++   ++  +++  S
Sbjct: 75   AADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVS 134

Query: 544  EQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFG----KDGSCKYKPQSS 711
             ++++ C   E  +GCNGG    A+ +    G +       + G        C++    S
Sbjct: 135  AEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGS 194

Query: 712  AANDTGYVDIPK----------------------------QEKALMKAVATVGPISVGID 807
                TG  D PK                             EK +M  +   GP+  G  
Sbjct: 195  RPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVE-GAF 253

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLD-HGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDG 984
            + +  F  Y +G+Y     S E +  H + ++G+GVE   +   YWLV NSW   WG +G
Sbjct: 254  SVYSDFLLYKSGVY--QHVSGEIMGGHAIRILGWGVE---NGTPYWLVGNSWNTDWGDNG 308

Query: 985  YIKMTKDQN 1011
            + K+ + Q+
Sbjct: 309  FFKILRGQD 317


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,493,320
Number of extensions: 1219095
Number of successful extensions: 3599
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3556
Number of HSP's successfully gapped: 19
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar...   536   e-153
Alignment   gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma...   461   e-130
Alignment   gi|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (C...   345   3e-96
Alignment   gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari...   320   2e-87
Alignment   gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari...   298   8e-81
Alignment   gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca...   205   2e-53
Alignment   gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA...   171   9e-43
Alignment   gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca...   139   6e-33
Alignment   gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein...   124   2e-28
Alignment   gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar...   110   2e-24

>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
          Length = 333

 Score =  536 bits (1382), Expect(2) = e-153
 Identities = 248/319 (77%), Positives = 279/319 (87%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNPSL L A CLGIASAAP+ D SL+A WY+WKATHR+LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1    MNPSLFLTALCLGIASAAPKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ QGKH FTMAMNAFGDMTNEEFR+ MNGFQNQKHKKGK+F +   A  P SVDW
Sbjct: 61   LHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFAEIPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS  +GNEGCNG
Sbjct: 121  REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
            GLMDNAF+Y+KDNGGLDSEESYPY G+D  +C YKP+ SAANDTG+VD+P++EKALMKAV
Sbjct: 181  GLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQN 954
            AT+GPISV IDA H+SFQFY +GIYF+P CSS+DLDHGVLVVGYG EG  SNNK+W+V+N
Sbjct: 241  ATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            SWG  WG +GY+KM KDQN
Sbjct: 301  SWGPEWGWNGYVKMAKDQN 319



 Score = 25.8 bits (55), Expect(2) = e-153
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA  ASYP V
Sbjct: 320  NHCGIATAASYPTV 333


>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted protein)
            (MEP) [Canis familiaris].
          Length = 333

 Score =  461 bits (1185), Expect = e-130
 Identities = 213/319 (66%), Positives = 257/319 (80%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M+PSL LAA CLGIASAAP+ DHSLDA W +WK  H KLY  +EEG RR +WE+NM+MIE
Sbjct: 1    MHPSLFLAALCLGIASAAPQQDHSLDAHWSQWKEAHGKLYDKDEEGWRRTVWERNMEMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
            +HN E+ QG+HSFT+AMNAFGDMTNEEF++ +N F+ QKHKKGKVF     A  P SVDW
Sbjct: 61   QHNQEYSQGEHSFTLAMNAFGDMTNEEFKQVLNDFKIQKHKKGKVFPAPLFAEVPSSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            RE+GYVT VK+QG C  CWAFSATGALEGQMFRKT KL+SLSEQNLVDCSW +GN GCNG
Sbjct: 121  REQGYVTPVKDQGQCLGCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSWSQGNRGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLM+ AFQY+KDNGGLDSEESYPY  ++  CKY+P+ SAAN T +  I  +E  LM  VA
Sbjct: 181  GLMEYAFQYVKDNGGLDSEESYPYLARNEPCKYRPEKSAANVTAFWPILNEEDGLMTTVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQN 954
            TVGP+S  +D+S +SFQFY  GIY++P+CS++ L+HGVLVVGYG EGA S+N KYW+V+N
Sbjct: 241  TVGPVSAAVDSSPQSFQFYKKGIYYDPKCSNKLLNHGVLVVGYGFEGAESDNKKYWIVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            SWG  WGM GY+ + KD++
Sbjct: 301  SWGTNWGMQGYMLLAKDRD 319


>ref|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (Cathepsin V) (Cathepsin
            U) [Canis familiaris].
          Length = 289

 Score =  345 bits (885), Expect(2) = 3e-96
 Identities = 184/307 (59%), Positives = 206/307 (67%), Gaps = 1/307 (0%)
 Frame = +1

Query: 94   GIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHS 273
            GI SAAP+ D SL+A WY+WKA HR LY +NEEG RRA+WEKNMKMIE HN E+ QGKH 
Sbjct: 10   GIVSAAPKLDQSLNAQWYQWKAMHR-LYAMNEEGWRRAVWEKNMKMIELHNREYSQGKHG 68

Query: 274  FTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
            FTMAMNAFG MTNEEFR+ MNGFQNQKHKKGKVF +   A  P SVDWREKGYVT VKNQ
Sbjct: 69   FTMAMNAFGYMTNEEFRQVMNGFQNQKHKKGKVFQEPLFAEIPKSVDWREKGYVTPVKNQ 128

Query: 454  GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKD 633
            GHCGSCWAFSATG L+GQMF+KT KL      NLVDC   +GN+GCNGGLMDNAFQY+KD
Sbjct: 129  GHCGSCWAFSATGDLKGQMFQKTGKL------NLVDCYQAQGNKGCNGGLMDNAFQYVKD 182

Query: 634  NGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDA 810
            NGGLDSEE Y Y G+D  +  YKP+ SAA                              A
Sbjct: 183  NGGLDSEECYLYLGRDTDTYNYKPECSAAMTL---------------------------A 215

Query: 811  SHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYI 990
            S  S      G   + Q  S    +G  VVGYG EG  SNNK W+V+NSWG  WG +GY+
Sbjct: 216  SWTSL----NGRRLQQQ-RSRSWCYG--VVGYGFEGTDSNNKLWIVKNSWGTEWGWNGYV 268

Query: 991  KMTKDQN 1011
            K  K QN
Sbjct: 269  KTAKGQN 275



 Score = 26.2 bits (56), Expect(2) = 3e-96
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 990  KDDQRSEHHCGIAHMASYPVV 1052
            K  +   +HCGIA  ASYP V
Sbjct: 269  KTAKGQNNHCGIATAASYPTV 289


>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
          Length = 330

 Score =  320 bits (820), Expect = 2e-87
 Identities = 160/312 (51%), Positives = 209/312 (66%), Gaps = 5/312 (1%)
 Frame = +1

Query: 91   LGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWEHRQGK 267
            L +AS A   +  LD  W  WK T+RK Y    +E  RR IWEKN+K I  HN E   G 
Sbjct: 10   LPMASFALYPEEILDTQWDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGV 69

Query: 268  HSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWREKGYVT 438
            H++ +AMN  GDMT+EE  + M G +   +       +++    +  P SVD+R+KGYVT
Sbjct: 70   HTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKGYVT 129

Query: 439  AVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAF 618
             VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC     N+GC GG M NAF
Sbjct: 130  PVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGYMTNAF 187

Query: 619  QYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVATVGPIS 795
            QY++ N G+DSE++YPY G+D SC Y P   AA   GY +IP+  EKAL +AVA VGPIS
Sbjct: 188  QYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPIS 247

Query: 796  VGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWG 975
            V IDAS  SFQFYS G+Y++  C+S++L+H VL VGYG++     NK+W+++NSWG  WG
Sbjct: 248  VAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSWGENWG 304

Query: 976  MDGYIKMTKDQN 1011
              GYI M +++N
Sbjct: 305  NKGYILMARNKN 316


>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
          Length = 331

 Score =  298 bits (762), Expect = 8e-81
 Identities = 158/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
 Frame = +1

Query: 100  ASAAPRHDHSLDADWYKWKATHRKLYGL-NEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
            A A    D +LD  W  WK T+ K Y   NEE  RR IWEKN+K +  HN EH  G HS+
Sbjct: 14   AVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSY 73

Query: 277  TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
             + MN  GDMT EE    M   +   + ++   +    +   P SVDWREKG VT VK Q
Sbjct: 74   DLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQ 133

Query: 454  GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
            G CG+CWAFSA GALE Q+  KT KL+SLS QNLVDCS  + GN+GCNGG M  AFQYI 
Sbjct: 134  GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193

Query: 631  DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
            DN G+DSE SYPY   +G C+Y  +  AA  + Y ++P   E AL +AVA  GP+SV ID
Sbjct: 194  DNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAID 253

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
            ASH SF  Y +G+Y+EP C +++++HGVLVVGYG    + N K YWLV+NSWG  +G  G
Sbjct: 254  ASHYSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDQG 308

Query: 985  YIKMTKDQNTTVESPTWP 1038
            YI+M ++        ++P
Sbjct: 309  YIRMARNSGNHCGIASYP 326


>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
          Length = 304

 Score =  205 bits (521), Expect(2) = 2e-53
 Identities = 117/289 (40%), Positives = 161/289 (55%), Gaps = 6/289 (2%)
 Frame = +1

Query: 163  HRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF 342
            H+K Y   E  +R   +  N + I  HN     G H+F M +N F DM   E +      
Sbjct: 10   HQKKYSSEEYLQRLQTFVGNWRKINAHN----AGNHTFKMGLNQFSDMNFAEIKHKYLWS 65

Query: 343  QNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRK 519
            + Q     K     G+   P  VDWR+KG +V+ VKNQG CGSCW FS TGALE  +  K
Sbjct: 66   EPQNCSATKGNYLRGTGPYPPFVDWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIAIK 125

Query: 520  TSKLISLSEQNLVDCSWPEGNEGCNG-GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKY 696
            + KL+SL+EQ LVDC+    N GC G G    AF+YI+ N G+  E+SYPY G+DG CKY
Sbjct: 126  SGKLLSLAEQQLVDCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKY 185

Query: 697  KPQSSAA--NDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC-- 864
            +P  + A   D   + I   E+A+++AVA   P+S   + + + F  Y  GIY    C  
Sbjct: 186  QPSKAIAFVKDVANITI-NDEQAMVEAVALYNPVSFAFEVTSD-FMMYRKGIYSSTSCHK 243

Query: 865  SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
            + + ++H VL VGYG +   +   YW+V+NSWG  WGM+GY  M + +N
Sbjct: 244  TPDKVNHAVLAVGYGEQ---NGIPYWIVKNSWGPQWGMNGYFLMERGKN 289



 Score = 23.9 bits (50), Expect(2) = 2e-53
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 999  QRSEHHCGIAHMASYPV 1049
            +R ++ CG+A  ASYP+
Sbjct: 285  ERGKNMCGLAACASYPI 301


>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
           familiaris].
          Length = 442

 Score =  171 bits (434), Expect = 9e-43
 Identities = 104/281 (37%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
 Frame = +1

Query: 160 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 336
           T+ + Y   EE   R +++  NM   ++     R    +    +  F D+T EEFR    
Sbjct: 150 TYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRG---TAQYGITKFSDLTEEEFRTIYL 206

Query: 337 G--FQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 510
               +  + KK ++         P   DWR KG VT VK+QG CGSCWAFS TG +EGQ 
Sbjct: 207 NPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 266

Query: 511 FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 690
           F K   L+SLSEQ L+DC   + ++ C GGL  NA+  I   GGL++E+ Y Y G   +C
Sbjct: 267 FLKEGTLLSLSEQELLDCD--KVDKACLGGLPSNAYSAIMTLGGLETEDDYSYQGHLQAC 324

Query: 691 KYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQC 864
            +  + +       +++ + E+ L   +A  GPISV I+A     QFY  GI     P C
Sbjct: 325 SFSAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINAF--GMQFYRHGISHPLRPLC 382

Query: 865 SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
           S   +DH VL+VGY   G  S   +W ++NSWG  WG +GY
Sbjct: 383 SPWLIDHAVLLVGY---GNRSGIPFWAIKNSWGTDWGEEGY 420


>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
          Length = 518

 Score =  139 bits (349), Expect = 6e-33
 Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 6/245 (2%)
 Frame = +1

Query: 271 SFTMAMNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAV 444
           S    +N F  ++ EEF+      +  +  +   +V     +   P   DWR+K  VT V
Sbjct: 259 SAVYGINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVRTSIRNVSLPLRFDWRDKRVVTQV 318

Query: 445 KNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQY 624
           +NQ  CG CWAFS  GA+E     K   L  +S Q ++DCS+   N GC+GG   NA  +
Sbjct: 319 RNQQTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDCSY--NNYGCSGGSTLNALNW 376

Query: 625 I-KDNGGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPKQEKALMKAVATVGPI 792
           + K    L  +  YP+  ++G C Y   S S  +  GY   D   QE  + K + T GP+
Sbjct: 377 LNKTQVKLVRDSEYPFKAQNGLCHYFSDSYSGFSIRGYSAYDFSDQEDEMAKVLLTFGPL 436

Query: 793 SVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTW 972
            V +DA   S+Q Y  GI  +  CSS + +H VL+ G+   G   +  YW+V+NSWG++W
Sbjct: 437 VVVVDA--VSWQDYLGGI-IQHHCSSGEANHAVLITGFDKIG---STPYWIVRNSWGSSW 490

Query: 973 GMDGY 987
           G+DGY
Sbjct: 491 GVDGY 495


>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
          Length = 374

 Score =  124 bits (311), Expect = 2e-28
 Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 27/267 (10%)
 Frame = +1

Query: 295  FGDMTNEEFRKTMNGFQNQKHKKG-------KVFLDAGSALTPHSVDWRE-KGYVTAVKN 450
            F D+T EEF +    F   +   G       KV  +      P + DWR+  G ++ +K 
Sbjct: 91   FSDLTEEEFGQ----FYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQ 146

Query: 451  QGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIK 630
            QG+C  CWA +A G +E     +  + + +S Q L+DC      +GC GG   +AF  + 
Sbjct: 147  QGNCRCCWAMAAAGNIEALWGIRYHQPVEVSVQELLDCG--RCGDGCKGGFTWDAFITVL 204

Query: 631  DNGGLDSEESYPYFG--KDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGI 804
            +N GL S + YP+ G  K   C  K     A    ++ +   E+A+   +AT GPI+V I
Sbjct: 205  NNSGLASAKDYPFLGNTKPHRCLAKKYKKVAWIQDFIMLQGNEQAIAWYLATKGPITVTI 264

Query: 805  DASHESFQFYSTGIY--FEPQCSSEDLDHGVLVVGYG---------VEGAHSNNK----- 936
            +   +  Q Y  G+       C  + +DH VL+VG+G          EG  S  +     
Sbjct: 265  NM--KLLQHYQKGVIQATHTTCDPQRVDHSVLLVGFGKSKSVAGKQAEGGSSRPRPHHPI 322

Query: 937  -YWLVQNSWGNTWGMDGYIKMTKDQNT 1014
             YW+++NSWG  WG +GY ++ +  NT
Sbjct: 323  PYWILKNSWGAEWGEEGYFRLHRGNNT 349


>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
          Length = 459

 Score =  110 bits (276), Expect = 2e-24
 Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
 Frame = +1

Query: 400  PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
            P S DWR      +V+ V+NQ  CGSC+AF++T  LE ++   T+   +  LS Q +V C
Sbjct: 229  PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSC 288

Query: 565  SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK----YKPQSSAANDTGY 732
            S  +  +GC GG           + GL  E  +PY G D  CK    ++  SS     G 
Sbjct: 289  S--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCKPNDCFRYYSSEYYYVGG 346

Query: 733  VDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVLV 897
                  E  +   +   GP++V  +  ++ F  Y  GIY+     +P    E  +H VL+
Sbjct: 347  FYGACNEALMKLELVRHGPMAVAFEV-YDDFFHYQKGIYYHTGLRDPFNPFELTNHAVLL 405

Query: 898  VGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
            VGYG + A S   YW+V+NSWG+ WG DGY ++ +
Sbjct: 406  VGYGTDSA-SGMDYWIVKNSWGSRWGEDGYFRIRR 439


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,320,081
Number of extensions: 1245093
Number of successful extensions: 3663
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3620
Number of HSP's successfully gapped: 20
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].           521   e-148
Alignment   gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].           521   e-148
Alignment   gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].        494   e-140
Alignment   gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].           494   e-140
Alignment   gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens].            320   1e-87
Alignment   gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie...   299   4e-81
Alignment   gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa...   248   9e-66
Alignment   gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].        223   8e-59
Alignment   gi|NP_003784.2| cathepsin F precursor [Homo sapiens].                174   1e-43
Alignment   gi|NP_001325.1| cathepsin O preproprotein [Homo sapiens].            144   2e-34

>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
          Length = 333

 Score =  521 bits (1341), Expect = e-148
 Identities = 246/318 (77%), Positives = 270/318 (84%), Gaps = 1/318 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNP+L+LAAFCLGIASA    DHSL+A W KWKA H +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1    MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF +      P SVDW
Sbjct: 61   LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121  REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLMD AFQY++DNGGLDSEESYPY   + SCKY P+ S ANDTG+VDIPKQEKALMKAVA
Sbjct: 181  GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
            TVGPISV IDA HESF FY  GIYFEP CSSED+DHGVLVVGYG E   S NNKYWLV+N
Sbjct: 241  TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQ 1008
            SWG  WGM GY+KM KD+
Sbjct: 301  SWGEEWGMGGYVKMAKDR 318


>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
          Length = 333

 Score =  521 bits (1341), Expect = e-148
 Identities = 246/318 (77%), Positives = 270/318 (84%), Gaps = 1/318 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNP+L+LAAFCLGIASA    DHSL+A W KWKA H +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1    MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+R+GKHSFTMAMNAFGDMT+EEFR+ MNGFQN+K +KGKVF +      P SVDW
Sbjct: 61   LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVT VKNQG CGSCWAFSATGALEGQMFRKT +LISLSEQNLVDCS P+GNEGCNG
Sbjct: 121  REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLMD AFQY++DNGGLDSEESYPY   + SCKY P+ S ANDTG+VDIPKQEKALMKAVA
Sbjct: 181  GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
            TVGPISV IDA HESF FY  GIYFEP CSSED+DHGVLVVGYG E   S NNKYWLV+N
Sbjct: 241  TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQ 1008
            SWG  WGM GY+KM KD+
Sbjct: 301  SWGEEWGMGGYVKMAKDR 318


>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
          Length = 334

 Score =  494 bits (1273), Expect(2) = e-140
 Identities = 235/320 (73%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MN SL+LAAFCLGIASA P+ D +LD  WY+WKATHR+LYG NEEG RRA+WEKNMKMIE
Sbjct: 1    MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ QGKH FTMAMNAFGDMTNEEFR+ M  F+NQK +KGKVF +      P SVDW
Sbjct: 61   LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            R+KGYVT VKNQ  CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121  RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPKQEKALMKAV 774
            G M  AFQY+K+NGGLDSEESYPY   D  CKY+P++S ANDTG+ V  P +EKALMKAV
Sbjct: 181  GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQ 951
            ATVGPISV +DA H SFQFY +GIYFEP CSS++LDHGVLVVGYG EGA+SNN KYWLV+
Sbjct: 241  ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300

Query: 952  NSWGNTWGMDGYIKMTKDQN 1011
            NSWG  WG +GY+K+ KD+N
Sbjct: 301  NSWGPEWGSNGYVKIAKDKN 320



 Score = 24.6 bits (52), Expect(2) = e-140
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA  ASYP V
Sbjct: 321  NHCGIATAASYPNV 334


>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
          Length = 334

 Score =  494 bits (1273), Expect(2) = e-140
 Identities = 235/320 (73%), Positives = 267/320 (83%), Gaps = 2/320 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MN SL+LAAFCLGIASA P+ D +LD  WY+WKATHR+LYG NEEG RRA+WEKNMKMIE
Sbjct: 1    MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ QGKH FTMAMNAFGDMTNEEFR+ M  F+NQK +KGKVF +      P SVDW
Sbjct: 61   LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            R+KGYVT VKNQ  CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121  RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGY-VDIPKQEKALMKAV 774
            G M  AFQY+K+NGGLDSEESYPY   D  CKY+P++S ANDTG+ V  P +EKALMKAV
Sbjct: 181  GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNN-KYWLVQ 951
            ATVGPISV +DA H SFQFY +GIYFEP CSS++LDHGVLVVGYG EGA+SNN KYWLV+
Sbjct: 241  ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300

Query: 952  NSWGNTWGMDGYIKMTKDQN 1011
            NSWG  WG +GY+K+ KD+N
Sbjct: 301  NSWGPEWGSNGYVKIAKDKN 320



 Score = 24.6 bits (52), Expect(2) = e-140
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA  ASYP V
Sbjct: 321  NHCGIATAASYPNV 334


>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
          Length = 329

 Score =  320 bits (821), Expect = 1e-87
 Identities = 159/317 (50%), Positives = 208/317 (65%), Gaps = 5/317 (1%)
 Frame = +1

Query: 76   LAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNWE 252
            L    L + S A   +  LD  W  WK THRK Y    +E  RR IWEKN+K I  HN E
Sbjct: 4    LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLE 63

Query: 253  HRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWRE 423
               G H++ +AMN  GDMT+EE  + M G +   +       +++       P SVD+R+
Sbjct: 64   ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK 123

Query: 424  KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
            KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC     N+GC GG 
Sbjct: 124  KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGY 181

Query: 604  MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVAT 780
            M NAFQY++ N G+DSE++YPY G++ SC Y P   AA   GY +IP+  EKAL +AVA 
Sbjct: 182  MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241

Query: 781  VGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSW 960
            VGP+SV IDAS  SFQFYS G+Y++  C+S++L+H VL VGYG++     NK+W+++NSW
Sbjct: 242  VGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ---KGNKHWIIKNSW 298

Query: 961  GNTWGMDGYIKMTKDQN 1011
            G  WG  GYI M +++N
Sbjct: 299  GENWGNKGYILMARNKN 315


>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
          Length = 331

 Score =  299 bits (765), Expect = 4e-81
 Identities = 153/317 (48%), Positives = 205/317 (64%), Gaps = 4/317 (1%)
 Frame = +1

Query: 100  ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
            A A    D +LD  W+ WK T+ K Y   NEE  RR IWEKN+K +  HN EH  G HS+
Sbjct: 14   AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73

Query: 277  TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
             + MN  GDMT+EE    M+  +   + ++   +    + + P SVDWREKG VT VK Q
Sbjct: 74   DLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQ 133

Query: 454  GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
            G CG+CWAFSA GALE Q+  KT KL+SLS QNLVDCS  + GN+GCNGG M  AFQYI 
Sbjct: 134  GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 193

Query: 631  DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
            DN G+DS+ SYPY   D  C+Y  +  AA  + Y ++P  +E  L +AVA  GP+SVG+D
Sbjct: 194  DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 253

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
            A H SF  Y +G+Y+EP C +++++HGVLVVGY   G  +  +YWLV+NSWG+ +G +GY
Sbjct: 254  ARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGY---GDLNGKEYWLVKNSWGHNFGEEGY 309

Query: 988  IKMTKDQNTTVESPTWP 1038
            I+M +++       ++P
Sbjct: 310  IRMARNKGNHCGIASFP 326


>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
          Length = 281

 Score =  248 bits (632), Expect = 9e-66
 Identities = 135/316 (42%), Positives = 178/316 (56%), Gaps = 3/316 (0%)
 Frame = +1

Query: 100  ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
            A A    D +LD  W+ WK T+ K Y   NEE  RR IWEKN+K +  HN EH  G HS+
Sbjct: 14   AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSY 73

Query: 277  TMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQG 456
             + MN  GDM                                                 G
Sbjct: 74   DLGMNHLGDM-------------------------------------------------G 84

Query: 457  HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIKD 633
             CG+CWAFSA GALE Q+  KT KL+SLS QNLVDCS  + GN+GCNGG M  AFQYI D
Sbjct: 85   SCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 144

Query: 634  NGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGIDA 810
            N G+DS+ SYPY   D  C+Y  +  AA  + Y ++P  +E  L +AVA  GP+SVG+DA
Sbjct: 145  NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDA 204

Query: 811  SHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYI 990
             H SF  Y +G+Y+EP C +++++HGVLVVGY   G  +  +YWLV+NSWG+ +G +GYI
Sbjct: 205  RHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGY---GDLNGKEYWLVKNSWGHNFGEEGYI 260

Query: 991  KMTKDQNTTVESPTWP 1038
            +M +++       ++P
Sbjct: 261  RMARNKGNHCGIASFP 276


>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
          Length = 335

 Score =  223 bits (567), Expect(2) = 8e-59
 Identities = 129/324 (39%), Positives = 179/324 (55%), Gaps = 8/324 (2%)
 Frame = +1

Query: 64   PSLLLAAFCLGI--ASAAPRHDHSLDADWYK-WKATHRKLYGLNEEGRRRAIWEKNMKMI 234
            P L   A+ LG+    AA    +SL+   +K W + HRK Y   E   R   +  N + I
Sbjct: 6    PLLCAGAWLLGVPVCGAAELCVNSLEKFHFKSWMSKHRKTYSTEEYHHRLQTFASNWRKI 65

Query: 235  ERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVD 414
              HN     G H+F MA+N F DM+  E +      + Q     K     G+   P SVD
Sbjct: 66   NAHN----NGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNYLRGTGPYPPSVD 121

Query: 415  WREKG-YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGC 591
            WR+KG +V+ VKNQG CGSCW FS TGALE  +   T K++SL+EQ LVDC+    N GC
Sbjct: 122  WRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGC 181

Query: 592  NGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSA--ANDTGYVDIPKQEKALM 765
             GGL   AF+YI  N G+  E++YPY GKDG CK++P  +     D   + I   E+A++
Sbjct: 182  QGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITI-YDEEAMV 240

Query: 766  KAVATVGPISVGIDASHESFQFYSTGIYFEPQC--SSEDLDHGVLVVGYGVEGAHSNNKY 939
            +AVA   P+S   + + + F  Y TGIY    C  + + ++H VL VGYG +   +   Y
Sbjct: 241  EAVALYNPVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEK---NGIPY 296

Query: 940  WLVQNSWGNTWGMDGYIKMTKDQN 1011
            W+V+NSWG  WGM+GY  + + +N
Sbjct: 297  WIVKNSWGPQWGMNGYFLIERGKN 320



 Score = 23.9 bits (50), Expect(2) = 8e-59
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 999  QRSEHHCGIAHMASYPV 1049
            +R ++ CG+A  ASYP+
Sbjct: 316  ERGKNMCGLAACASYPI 332


>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
          Length = 484

 Score =  174 bits (441), Expect = 1e-43
 Identities = 110/281 (39%), Positives = 149/281 (53%), Gaps = 5/281 (1%)
 Frame = +1

Query: 160  THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMN 336
            T+ + Y   EE R R +++  NM   ++     R    +    +  F D+T EEFR    
Sbjct: 193  TYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRG---TAQYGVTKFSDLTEEEFRTIYL 249

Query: 337  GFQNQKHKKGKVFLDAGSA--LTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQM 510
                +K + G     A S   L P   DWR KG VT VK+QG CGSCWAFS TG +EGQ 
Sbjct: 250  NTLLRK-EPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 308

Query: 511  FRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC 690
            F     L+SLSEQ L+DC   + ++ C GGL  NA+  IK+ GGL++E+ Y Y G   SC
Sbjct: 309  FLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC 366

Query: 691  KYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQC 864
             +  + +       V++ + E+ L   +A  GPISV I+A     QFY  GI     P C
Sbjct: 367  NFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLC 424

Query: 865  SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
            S   +DH VL+VGY   G  S+  +W ++NSWG  WG  GY
Sbjct: 425  SPWLIDHAVLLVGY---GNRSDVPFWAIKNSWGTDWGEKGY 462


>ref|NP_001325.1| cathepsin O preproprotein [Homo sapiens].
          Length = 321

 Score =  144 bits (362), Expect = 2e-34
 Identities = 91/248 (36%), Positives = 129/248 (52%), Gaps = 6/248 (2%)
 Frame = +1

Query: 286  MNAFGDMTNEEFRKTMNGFQNQKHKK--GKVFLDAGSALTPHSVDWREKGYVTAVKNQGH 459
            +N F  +  EEF+      +  K  +   +V +   +   P   DWR+K  VT V+NQ  
Sbjct: 69   INQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQM 128

Query: 460  CGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KDN 636
            CG CWAFS  GA+E     K   L  LS Q ++DCS+   N GCNGG   NA  ++ K  
Sbjct: 129  CGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSY--NNYGCNGGSTLNALNWLNKMQ 186

Query: 637  GGLDSEESYPYFGKDGSCKYKPQS-SAANDTGY--VDIPKQEKALMKAVATVGPISVGID 807
              L  +  YP+  ++G C Y   S S  +  GY   D   QE  + KA+ T GP+ V +D
Sbjct: 187  VKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVD 246

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
            A   S+Q Y  GI  +  CSS + +H VL+ G+   G   +  YW+V+NSWG++WG+DGY
Sbjct: 247  A--VSWQDYLGGI-IQHHCSSGEANHAVLITGFDKTG---STPYWIVRNSWGSSWGVDGY 300

Query: 988  IKMTKDQN 1011
              +    N
Sbjct: 301  AHVKMGSN 308


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,691,999
Number of extensions: 1240884
Number of successful extensions: 3607
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3554
Number of HSP's successfully gapped: 26
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].           484   e-138
Alignment   gi|NP_081620.2| cathepsin L-like 3 [Mus musculus].                   431   e-121
Alignment   gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].       430   e-121
Alignment   gi|NP_835199.1| testin-2 precursor [Mus musculus].                   407   e-115
Alignment   gi|NP_067420.1| cathepsin 6 [Mus musculus].                          371   e-103
Alignment   gi|NP_064680.1| cathepsin R precursor [Mus musculus].                364   e-101
Alignment   gi|NP_062414.3| cathepsin 8 [Mus musculus].                          363   e-101
Alignment   gi|NP_071721.2| cathepsin M precursor [Mus musculus].                363   e-100
Alignment   gi|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus].          357   9e-99
Alignment   gi|NP_036137.1| cathepsin J [Mus musculus].                          353   2e-98

>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
          Length = 334

 Score =  484 bits (1245), Expect(2) = e-138
 Identities = 225/319 (70%), Positives = 266/319 (83%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MN  LLLA  CLG A A P+ D +  A+W++WK+THR+LYG NEE  RRAIWEKNM+MI+
Sbjct: 1    MNLLLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQ 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+  G+H F+M MNAFGDMTNEEFR+ +NG+++QKHKKG++F +      P SVDW
Sbjct: 61   LHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLKIPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKG VT VKNQG CGSCWAFSA+G LEGQMF KT KLISLSEQNLVDCS  +GN+GCNG
Sbjct: 121  REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLMD AFQYIK+NGGLDSEESYPY  KDGSCKY+ + + ANDTG+VDIP+QEKALMKAVA
Sbjct: 181  GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQQEKALMKAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
            TVGPISV +DASH S QFYS+GIY+EP CSS++LDHGVL+VGYG EG  SN NKYWLV+N
Sbjct: 241  TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            SWG+ WGM+GYIK+ KD++
Sbjct: 301  SWGSEWGMEGYIKIAKDRD 319



 Score = 27.3 bits (59), Expect(2) = e-138
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 1008 EHHCGIAHMASYPVV 1052
            ++HCG+A  ASYPVV
Sbjct: 319  DNHCGLATAASYPVV 333


>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
          Length = 331

 Score =  431 bits (1107), Expect(2) = e-121
 Identities = 201/319 (63%), Positives = 242/319 (75%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M P  LLA  CLG+ SAAP H+ SLDA W +WK  H+K Y +N+EG++RA+WE N KMI+
Sbjct: 1    MTPVFLLATLCLGVVSAAPAHNPSLDAVWEEWKTKHKKTYNMNDEGQKRAVWENNKKMID 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG-KVFLDAGSALTPHSVD 414
             HN ++ +GKH F++ MNAFGD+TN EFR+ M GFQ QK K   KVF +      P SVD
Sbjct: 61   LHNEDYLKGKHGFSLEMNAFGDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPKSVD 120

Query: 415  WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 594
            WR+ GYVT VK+QG CGSCWAFSA G+LEGQMFRKT KL+ LS QNLVDCSW +GN+GC+
Sbjct: 121  WRDHGYVTPVKDQGSCGSCWAFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGNQGCD 180

Query: 595  GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
            GGL D AFQY+KDNGGLD+  SYPY   +G+C+Y P++SAA  TG+V++   E ALMKAV
Sbjct: 181  GGLPDLAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKNSAATVTGFVNVQSSEDALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQN 954
            ATVGPISVGID  H+SFQFY  G+Y+EP CSS  LDH VLVVGYG E      KYWLV+N
Sbjct: 241  ATVGPISVGIDTKHKSFQFYKEGMYYEPDCSSTVLDHAVLVVGYGEES--DGRKYWLVKN 298

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            SWG  WGM+GYIKM KD+N
Sbjct: 299  SWGRDWGMNGYIKMAKDRN 317



 Score = 24.3 bits (51), Expect(2) = e-121
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            ++CGIA  ASYPVV
Sbjct: 318  NNCGIASDASYPVV 331


>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
          Length = 330

 Score =  430 bits (1106), Expect = e-121
 Identities = 199/328 (60%), Positives = 239/328 (72%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M P  LLA  CLG+ SAAP HD SLDA W +WK  HRK Y +NEE ++RA+WE NMKMI 
Sbjct: 1    MTPVFLLATLCLGVVSAAPAHDPSLDAVWEEWKTKHRKTYNMNEEAQKRAVWENNMKMIG 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN ++ +GKH F + MNAFGD+TN EFR+ M GFQ+  HK+  +F +      P SVDW
Sbjct: 61   LHNEDYLKGKHGFNLEMNAFGDLTNTEFRELMTGFQSMGHKEMTIFQEPLLGDVPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            R+ GYVT VK+QGHCGSCWAFSA G+LEGQ+FRKT KL+ LSEQNL+DCSW  GN GCNG
Sbjct: 121  RDHGYVTPVKDQGHCGSCWAFSAVGSLEGQIFRKTGKLVPLSEQNLMDCSWSYGNVGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLM+ AFQY+K+N GLD+ ESY Y   DG C+Y P+ SA N TG+V +P  E ALM AVA
Sbjct: 181  GLMELAFQYVKENRGLDTRESYAYEAWDGPCRYDPKYSAVNITGFVKVPLSEDALMNAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
            +VGP+SVGID  H SF+FY  G Y+EP CSS +LDH VLVVGYG E      KYWLV+NS
Sbjct: 241  SVGPVSVGIDTHHHSFRFYRGGTYYEPDCSSTNLDHAVLVVGYGEES--DGRKYWLVKNS 298

Query: 958  WGNTWGMDGYIKMTKDQNTTVESPTWPV 1041
            WG  WGMDGYIKM KD++      T+ +
Sbjct: 299  WGEDWGMDGYIKMAKDRDNNCGIATYAI 326


>ref|NP_835199.1| testin-2 precursor [Mus musculus].
          Length = 333

 Score =  407 bits (1045), Expect(2) = e-115
 Identities = 194/315 (61%), Positives = 226/315 (71%), Gaps = 1/315 (0%)
 Frame = +1

Query: 70   LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNW 249
            L LA  CL I S AP  D SLD  W +W+  H K Y +NEE  RRA+WEKN KMIE HNW
Sbjct: 5    LFLAILCLEIDSTAPTLDPSLDVQWNEWRTKHGKAYNVNEERLRRAVWEKNFKMIELHNW 64

Query: 250  EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG 429
            E+ +GKH FTM MNAFGD+TN EF K M GF+ QK K+  VF D      P  VDWR  G
Sbjct: 65   EYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLG 124

Query: 430  YVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMD 609
            YVT VKNQG+C S WAFSATG+LEGQMF+KT +L+ LSEQNL+DC        C+GG M 
Sbjct: 125  YVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQ 184

Query: 610  NAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGP 789
            NAFQY+KDNGGL +EESYPY G    C+Y  ++SAAN   +V IP +E+ALMKAVA VGP
Sbjct: 185  NAFQYVKDNGGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGP 244

Query: 790  ISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQNSWGN 966
            ISV +DASH+SFQFY +GIY+EPQC    L+H VLVVGYG EG  S+ N YWLV+NSWG 
Sbjct: 245  ISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGE 304

Query: 967  TWGMDGYIKMTKDQN 1011
             WGM GYIK+ KD N
Sbjct: 305  EWGMKGYIKIAKDWN 319



 Score = 26.9 bits (58), Expect(2) = e-115
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA +A+YP+V
Sbjct: 320  NHCGIATLATYPIV 333


>ref|NP_067420.1| cathepsin 6 [Mus musculus].
          Length = 334

 Score =  371 bits (952), Expect = e-103
 Identities = 171/320 (53%), Positives = 227/320 (70%), Gaps = 2/320 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M+P+L LA  CLG+ S A   D +L+A+W+ WK  + K Y + EEG RRAIWE+NM+MI+
Sbjct: 1    MSPTLFLAILCLGVGSGALALDPNLNAEWHDWKKQYEKSYTMEEEGLRRAIWEENMRMIK 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLD-AGSALTPHSVD 414
             HNWE+  GK++FT+ MN FGD+T EE RK MN F    HKK K+    A   + P  VD
Sbjct: 61   LHNWENSLGKNNFTLKMNEFGDLTPEELRKMMNNFPIWSHKKRKIIRKRAVGDVLPKFVD 120

Query: 415  WREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCN 594
            WR+KGYVT V+ Q  C SCWAF+  GA+EGQMF+KT KL  LS QNLVDC+  +GN+GC 
Sbjct: 121  WRKKGYVTRVRRQKFCNSCWAFAVNGAIEGQMFKKTGKLTPLSVQNLVDCTKTQGNDGCQ 180

Query: 595  GGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
             G    A++Y+ +NGGL++E +YPY GK+G C+Y P++S A  TG+V +P+ E  LM+AV
Sbjct: 181  WGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCRYNPKNSKAEITGFVSLPESEDILMEAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQ 951
            AT+GPIS  +DAS   F FY  GIY +P CS+  ++H VLVVGYG EG  ++ NKYWL++
Sbjct: 241  ATIGPISAAVDASFNRFSFYDGGIYHQPNCSNNTVNHAVLVVGYGTEGNETDGNKYWLIK 300

Query: 952  NSWGNTWGMDGYIKMTKDQN 1011
            NSWG  WG+ GY+K+ +DQN
Sbjct: 301  NSWGRRWGIGGYMKIIRDQN 320


>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
          Length = 334

 Score =  364 bits (935), Expect = e-101
 Identities = 175/317 (55%), Positives = 222/317 (70%), Gaps = 3/317 (0%)
 Frame = +1

Query: 70   LLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIERHNW 249
            + +A   LG+AS  P  D SLDA+W  WK  + K Y L EE  +R +WE+ +KMI+ HN 
Sbjct: 5    VFIAFLYLGVASGVPVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNR 64

Query: 250  EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFL--DAGSALTPHSVDWRE 423
            E+  GK+ FTM MN FGD T+EEFRK M       H++GK  +  +AGS L P  VDWR+
Sbjct: 65   ENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSIL-PKFVDWRK 123

Query: 424  KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGL 603
            KGYVT V+ QG C +CWAF+ TGA+E Q   +T KL  LS QNLVDCS P+GN GC GG 
Sbjct: 124  KGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGD 183

Query: 604  MDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATV 783
              NAFQY+  NGGL+SE +YPY GKDG C+Y P++S A  TG+V +P+ E  LM AVAT+
Sbjct: 184  TYNAFQYVLHNGGLESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDILMAAVATI 243

Query: 784  GPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQNSW 960
            GPI+ GIDASHESF+ Y  GIY EP CSS+ + HGVLVVGYG +G  ++ N YWL++NSW
Sbjct: 244  GPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIKNSW 303

Query: 961  GNTWGMDGYIKMTKDQN 1011
            G  WG+ GY+K+ KD+N
Sbjct: 304  GKRWGIRGYMKLAKDKN 320


>ref|NP_062414.3| cathepsin 8 [Mus musculus].
          Length = 333

 Score =  363 bits (933), Expect(2) = e-101
 Identities = 172/319 (53%), Positives = 223/319 (69%), Gaps = 1/319 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M P++LLA  CLG+A      D SLD++W +WK    K Y + EEG++RA+WE+NMK+++
Sbjct: 1    MGPAVLLAILCLGVAEVTQSSDPSLDSEWQEWKRKFNKNYSMEEEGQKRAVWEENMKLVK 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
            +HN E+ QGK +FTM +NAFGDMT EE+RK +        +K K      +   P  VDW
Sbjct: 61   QHNIEYDQGKKNFTMDVNAFGDMTGEEYRKMLTDIPVPNFRKKKSIHQPIAGYLPKFVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            R++G VT VKNQG C SCWAFSA GA+EGQMFRKT KL+ LS QNLVDCS  EGN GC  
Sbjct: 121  RKRGCVTPVKNQGTCNSCWAFSAAGAIEGQMFRKTGKLVPLSTQNLVDCSRLEGNFGCFK 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            G    A +Y+  N GL++E +YPY G DG C+Y P+ SAA  T +  +   EK LM+AVA
Sbjct: 181  GSTFLALKYVWKNRGLEAESTYPYKGTDGHCRYHPERSAARITSFSFVSNSEKDLMRAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
            T+GPISVGIDA H+SF+ Y  GIY+EP+CSS  ++H VLVVGYG EG  S+ NKYWL++N
Sbjct: 241  TIGPISVGIDARHKSFRLYREGIYYEPKCSSNIINHSVLVVGYGYEGKESDGNKYWLIKN 300

Query: 955  SWGNTWGMDGYIKMTKDQN 1011
            S G  WGM+GY+K+ + +N
Sbjct: 301  SHGEQWGMNGYMKLARGRN 319



 Score = 22.7 bits (47), Expect(2) = e-101
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA  A YP V
Sbjct: 320  NHCGIASYAVYPRV 333


>ref|NP_071721.2| cathepsin M precursor [Mus musculus].
          Length = 333

 Score =  363 bits (931), Expect = e-100
 Identities = 176/318 (55%), Positives = 218/318 (68%), Gaps = 1/318 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M  ++ LA  CLG+A  +P  D  LD +W KWK  + K Y L EEG++RA+WE NMK I+
Sbjct: 1    MTSAIFLAMLCLGMALPSPAPDPILDVEWQKWKIKYGKAYSLEEEGQKRAVWEDNMKKIK 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+  GKH FTM MNAFGDMT EEFRK M        KKGK      S   P  ++W
Sbjct: 61   LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFINW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            +++GYVT V+ QG C SCWAFS TGA+EGQMFRKT +LI LS QNLVDCS P+GN GC  
Sbjct: 121  KKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYL 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            G    A  Y+ +NGGL+SE +YPY  KDGSC+Y P++S AN TG+  +PK E ALM AVA
Sbjct: 181  GNTYLALHYVMENGGLESEATYPYEEKDGSCRYSPENSTANITGFEFVPKNEDALMNAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQN 954
            ++GPISV IDA H SF FY  GIY+EP CSS  + H +L+VGYG  G  S+  KYWLV+N
Sbjct: 241  SIGPISVAIDARHASFLFYKRGIYYEPNCSSSVVTHSMLLVGYGFTGRESDGRKYWLVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQ 1008
            S G  WG  GY+K+++D+
Sbjct: 301  SMGTQWGNKGYMKISRDK 318


>ref|XP_922074.1| PREDICTED: cathepsin M-like [Mus musculus].
          Length = 333

 Score =  357 bits (916), Expect = 9e-99
 Identities = 174/318 (54%), Positives = 218/318 (68%), Gaps = 1/318 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M P++ LA   L +AS++P  D  LDA+W KWK  H K Y L EE ++RA+WE+NMK I+
Sbjct: 1    MTPAVFLAILWLVMASSSPSPDPILDAEWQKWKIKHGKPYSLEEEEQKRAVWEENMKKIK 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+  GKH FTM MNAFGDMT EEFRK M        KKGK      S   P  ++W
Sbjct: 61   LHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKHLSVNLPKFINW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            +++GYVT V+ QG C SCWA S TGA+EGQMF+KT +LI LS QNLVDCS P+GN GC  
Sbjct: 121  KKRGYVTPVRTQGRCNSCWAISVTGAIEGQMFQKTGQLIPLSVQNLVDCSRPQGNRGCYV 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            G    A +Y+ +NGGL+SE +YPY  K+GSC+Y P++S A+ TG+  +P+ E ALM AVA
Sbjct: 181  GNTYRALKYVVENGGLESEATYPYEEKEGSCRYNPENSTASITGFDFVPENEDALMNAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHS-NNKYWLVQN 954
            T+GPISV IDA HESF FY  GIY EP CSS  + H +L+VGYG  G  S   KYW+V+N
Sbjct: 241  TIGPISVAIDARHESFLFYKRGIYHEPNCSSSVVTHAMLLVGYGFVGNESEGRKYWIVKN 300

Query: 955  SWGNTWGMDGYIKMTKDQ 1008
            S G  WG  GY+K+ +DQ
Sbjct: 301  SMGTKWGSKGYMKIARDQ 318


>ref|NP_036137.1| cathepsin J [Mus musculus].
          Length = 333

 Score =  353 bits (905), Expect(2) = 2e-98
 Identities = 168/324 (51%), Positives = 220/324 (67%), Gaps = 6/324 (1%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M P++LL   C G+AS A  HD  LDA+W  WK  + K Y   EE  RRA+WE+NM+MI+
Sbjct: 1    MTPTVLLLILCFGVASGAQAHDPKLDAEWKDWKTKYAKSYS-PEEALRRAVWEENMRMIK 59

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGF-----QNQKHKKGKVFLDAGSALTP 402
             HN E+  GK++FTM MN FGD T+EEFRK+++           H +  V +       P
Sbjct: 60   LHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGL-----P 114

Query: 403  HSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGN 582
               DWRE+GYVT V+NQG CGSCWAF+A GA+EGQMF KT  L  LS QNL+DCS   GN
Sbjct: 115  DYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGN 174

Query: 583  EGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKAL 762
            +GC  G    AF+Y+  N GL++E +YPY GKDG C+Y+ ++++AN T YV++P  E  L
Sbjct: 175  KGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLPPNELYL 234

Query: 763  MKAVATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEG-AHSNNKY 939
              AVA++GP+S  IDASH+SF+FY+ GIY+EP CSS  ++H VLVVGYG EG     N Y
Sbjct: 235  WVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNY 294

Query: 940  WLVQNSWGNTWGMDGYIKMTKDQN 1011
            WL++NSWG  WGM+GY+++ KD N
Sbjct: 295  WLIKNSWGEEWGMNGYMQIAKDHN 318



 Score = 25.8 bits (55), Expect(2) = 2e-98
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 1011 HHCGIAHMASYP 1046
            +HCGIA +ASYP
Sbjct: 319  NHCGIASLASYP 330


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,983,693
Number of extensions: 1058138
Number of successful extensions: 3031
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2962
Number of HSP's successfully gapped: 41
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].        676   0.0  
Alignment   gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa].                 532   e-152
Alignment   gi|NP_999467.1| cathepsin K precursor [Sus scrofa].                  318   3e-87
Alignment   gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].              294   7e-80
Alignment   gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].         294   7e-80
Alignment   gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].              216   6e-57
Alignment   gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].              183   1e-46
Alignment   gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].         135   4e-32
Alignment   gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s...   121   8e-28
Alignment   gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ...   104   1e-22

>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
          Length = 332

 Score =  676 bits (1745), Expect(2) = 0.0
 Identities = 317/318 (99%), Positives = 318/318 (100%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE
Sbjct: 1    MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
            RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW
Sbjct: 61   RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG
Sbjct: 121  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 777
            GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA
Sbjct: 181  GLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVA 240

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
            TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLV+NS
Sbjct: 241  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVKNS 300

Query: 958  WGNTWGMDGYIKMTKDQN 1011
            WGNTWGMDGYIKMTKDQN
Sbjct: 301  WGNTWGMDGYIKMTKDQN 318



 Score = 29.6 bits (65), Expect(2) = 0.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGIA MASYPVV
Sbjct: 319  NHCGIATMASYPVV 332


>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
          Length = 334

 Score =  532 bits (1370), Expect(2) = e-152
 Identities = 248/320 (77%), Positives = 279/320 (87%), Gaps = 2/320 (0%)
 Frame = +1

Query: 58   MNPSLLLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLNEEGRRRAIWEKNMKMIE 237
            M PSL L A CLGIASAAP+ D +LDADWYKWKATH +LYG+NEEG RRA+WEKNMKMIE
Sbjct: 1    MKPSLFLTALCLGIASAAPKLDQNLDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIE 60

Query: 238  RHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKGKVFLDAGSALTPHSVDW 417
             HN E+ QGKH F+MAMNAFGDMTNEEFR+ MNGFQNQKHKKGKVF ++     P SVDW
Sbjct: 61   LHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVLEVPKSVDW 120

Query: 418  REKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNG 597
            REKGYVTAVKNQG CGSCWAFSATGALEGQMFRKT KL+SLSEQNLVDCS P+GN+GCNG
Sbjct: 121  REKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180

Query: 598  GLMDNAFQYIKDNGGLDSEESYPYFGKD-GSCKYKPQSSAANDTGYVDIPKQEKALMKAV 774
            GLMDNAFQY+KDNGGLD+EESYPY G++  SC YKP+ SAANDTG+VDIP++EKALMKAV
Sbjct: 181  GLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAV 240

Query: 775  ATVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSN-NKYWLVQ 951
            ATVGPISV IDA H SFQFY +GIY++P CSS+DLDHGVLVVGYG EG  SN +K+W+V+
Sbjct: 241  ATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVK 300

Query: 952  NSWGNTWGMDGYIKMTKDQN 1011
            NSWG  WG +GY+KM KDQN
Sbjct: 301  NSWGPEWGWNGYVKMAKDQN 320



 Score = 24.6 bits (52), Expect(2) = e-152
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 1011 HHCGIAHMASYPVV 1052
            +HCGI+  ASYP V
Sbjct: 321  NHCGISTAASYPTV 334


>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
          Length = 330

 Score =  318 bits (815), Expect = 3e-87
 Identities = 157/318 (49%), Positives = 209/318 (65%), Gaps = 5/318 (1%)
 Frame = +1

Query: 73   LLAAFCLGIASAAPRHDHSLDADWYKWKATHRKLYGLN-EEGRRRAIWEKNMKMIERHNW 249
            L     L + S+A   +  LD  W  WK T+RK Y    +E  RR IWEKN+K I  HN 
Sbjct: 4    LKVVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNL 63

Query: 250  EHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQ---NQKHKKGKVFLDAGSALTPHSVDWR 420
            E   G H++ +AMN  GDMT+EE  + M G +   +       +++      TP S+D+R
Sbjct: 64   EASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYR 123

Query: 421  EKGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGG 600
            +KGYVT VKNQG CGSCWAFS+ GALEGQ+ +KT KL++LS QNLVDC     N+GC GG
Sbjct: 124  KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGG 181

Query: 601  LMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPK-QEKALMKAVA 777
             M NAFQY++ N G+DSE++YPY G+D +C Y P   AA   GY +IP+  EKAL +AVA
Sbjct: 182  YMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVA 241

Query: 778  TVGPISVGIDASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNS 957
             VGP+SV IDAS  SFQFYS G+Y++  C+S++L+H VL VGYG++      K+W+++NS
Sbjct: 242  RVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ---KGKKHWIIKNS 298

Query: 958  WGNTWGMDGYIKMTKDQN 1011
            WG  WG  GYI M +++N
Sbjct: 299  WGENWGNKGYILMARNKN 316


>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
          Length = 331

 Score =  294 bits (752), Expect = 7e-80
 Identities = 157/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
 Frame = +1

Query: 100  ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
            A A    D +LD  W  WK T+ K Y   NEE  RR IWEKN+K +  HN EH  G HS+
Sbjct: 14   AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73

Query: 277  TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
             + MN  GDMT+EE    M+  +   +  +   +    +   P S+DWREKG VT VK Q
Sbjct: 74   DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133

Query: 454  GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
            G CGSCWAFSA GALE Q+  KT +L+SLS QNLVDCS  +  N+GCNGG M  AFQYI 
Sbjct: 134  GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193

Query: 631  DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
            DN G+DSE SYPY   DG CKY  ++ AA  + Y ++P   E AL +AVA  GP+SV ID
Sbjct: 194  DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAID 253

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
            A H SF FY +G+Y++P C +++++HGVLVVGYG    + N K YWLV+NSWG  +G  G
Sbjct: 254  AKHSSFFFYRSGVYYDPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDGG 308

Query: 985  YIKMTKDQNTTVESPTWP 1038
            YI+M ++         +P
Sbjct: 309  YIRMARNSENHCGIANYP 326


>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
          Length = 331

 Score =  294 bits (752), Expect = 7e-80
 Identities = 157/318 (49%), Positives = 200/318 (62%), Gaps = 5/318 (1%)
 Frame = +1

Query: 100  ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 276
            A A    D +LD  W  WK T+ K Y   NEE  RR IWEKN+K +  HN EH  G HS+
Sbjct: 14   AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 73

Query: 277  TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 453
             + MN  GDMT+EE    M+  +   +  +   +    +   P S+DWREKG VT VK Q
Sbjct: 74   DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 133

Query: 454  GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 630
            G CGSCWAFSA GALE Q+  KT +L+SLS QNLVDCS  +  N+GCNGG M  AFQYI 
Sbjct: 134  GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 193

Query: 631  DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGID 807
            DN G+DSE SYPY   DG CKY  ++ AA  + Y ++P   E AL +AVA  GP+SV ID
Sbjct: 194  DNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAID 253

Query: 808  ASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNK-YWLVQNSWGNTWGMDG 984
            A H SF FY +G+Y++P C +++++HGVLVVGYG    + N K YWLV+NSWG  +G  G
Sbjct: 254  AKHSSFFFYRSGVYYDPSC-TQNVNHGVLVVGYG----NLNGKDYWLVKNSWGLNFGDGG 308

Query: 985  YIKMTKDQNTTVESPTWP 1038
            YI+M ++         +P
Sbjct: 309  YIRMARNSENHCGIANYP 326


>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
          Length = 335

 Score =  216 bits (549), Expect(2) = 6e-57
 Identities = 115/291 (39%), Positives = 165/291 (56%), Gaps = 4/291 (1%)
 Frame = +1

Query: 151  WKATHRKLYGLNEEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT 330
            W   H+K Y L E   R  ++  N + I  HN     G H+F + +N F DM+ +E R  
Sbjct: 38   WMVQHQKKYSLEEYHHRLQVFVSNWRKINAHN----AGNHTFKLGLNQFSDMSFDEIRHK 93

Query: 331  MNGFQNQKHKKGKVFLDAGSALTPHSVDWREKG-YVTAVKNQGHCGSCWAFSATGALEGQ 507
                + Q     K     G+   P S+DWR+KG +V+ VKNQG CGSCW FS TGALE  
Sbjct: 94   YLWSEPQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESA 153

Query: 508  MFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGS 687
            +   T K++SL+EQ LVDC+    N GC GGL   AF+YI+ N G+  E++YPY G+D  
Sbjct: 154  VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 213

Query: 688  CKYKPQSSAANDTGYVDIP-KQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC 864
            CK++P  + A      +I    E+A+++AVA   P+S   + +++ F  Y  GIY    C
Sbjct: 214  CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSC 272

Query: 865  --SSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTKDQN 1011
              + + ++H VL VGYG E   +   YW+V+NSWG  WGM+GY  + + +N
Sbjct: 273  HKTPDKVNHAVLAVGYGEE---NGIPYWIVKNSWGPQWGMNGYFLIERGKN 320



 Score = 23.9 bits (50), Expect(2) = 6e-57
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 999  QRSEHHCGIAHMASYPV 1049
            +R ++ CG+A  ASYP+
Sbjct: 316  ERGKNMCGLAACASYPI 332


>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
          Length = 490

 Score =  183 bits (465), Expect = 1e-46
 Identities = 109/280 (38%), Positives = 152/280 (54%), Gaps = 4/280 (1%)
 Frame = +1

Query: 160  THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 333
            T+ + Y   EE R R +++  NM   ++          +    +  F D+T EEFR   +
Sbjct: 199  TYNRTYDTKEEARWRMSVFANNMVRAQKIQ---ALDTGTARYGVTKFSDLTEEEFRTIYL 255

Query: 334  NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 513
            N    ++  +      + S+L P   DWR+KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 256  NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 315

Query: 514  RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 693
             K   L+SLSEQ L+DC   + ++GC GGL  NA+  IK  GGL++EE Y Y G   +C 
Sbjct: 316  LKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLGGLETEEDYSYRGHLQTCS 373

Query: 694  YKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCS 867
            +  + +       V++ + E+ L   +A  GPISV I+A     QFY  GI     P CS
Sbjct: 374  FNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGISHPLRPLCS 431

Query: 868  SEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDGY 987
               +DH VL+VGYG   A     +W ++NSWG  WG +GY
Sbjct: 432  PWLIDHAVLLVGYGNRSA---TPFWAIKNSWGTDWGEEGY 468


>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
          Length = 367

 Score =  135 bits (340), Expect = 4e-32
 Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 17/293 (5%)
 Frame = +1

Query: 187  EEGRRRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKTMNGFQNQKHKKG 366
            E  RR  I+ +N+   +R   E   G   F   +  F D+T EEF + ++G      K  
Sbjct: 58   EHARRLDIFAQNLAKAQRLQ-EEDLGTAEF--GVTPFSDLTEEEFGQ-LHGHHWGAGKAP 113

Query: 367  KVFLDAGSA----LTPHSVDWREK-GYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKL 531
             + +  GS       P S DWR+K G ++A+K+Q  C  CWA +A   +E Q   K  + 
Sbjct: 114  SMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQA 173

Query: 532  ISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFG--KDGSCKYKPQ 705
            + LS Q ++DC       GCNGG + +AF  + +  GL SE+ YPY G  K   C  K  
Sbjct: 174  VQLSVQQVLDCD--RCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQH 231

Query: 706  SSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCSSEDL 879
               A    ++ +   E+++ + +AT GPI+V I+A     Q Y  G+       C    +
Sbjct: 232  RKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAG--LLQQYKRGVIRATPATCDPHLV 289

Query: 880  DHGVLVVGYG----VEGAH----SNNKYWLVQNSWGNTWGMDGYIKMTKDQNT 1014
            +H VL+VG+G    VEG       +  YW+++NSWG  WG +GY ++ +  NT
Sbjct: 290  NHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNT 342


>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
          Length = 411

 Score =  121 bits (303), Expect = 8e-28
 Identities = 71/181 (39%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
 Frame = +1

Query: 457 HCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYI-KD 633
           HCG CWAFS   A+E     K   L  LS Q ++DCS+   N GCNGG   NA  ++ K 
Sbjct: 218 HCGGCWAFSVVSAVESAYAIKGQPLEVLSVQQVIDCSY--NNYGCNGGSTLNALYWLNKT 275

Query: 634 NGGLDSEESYPYFGKDGSCKYKPQSSAA---NDTGYVDIPKQEKALMKAVATVGPISVGI 804
              + S+  YP+  ++G C Y   S +     D    D   QE  + K + T+GP+ V +
Sbjct: 276 QVKVVSDSEYPFKAQNGLCHYFSCSHSGVSIKDYSAYDFSGQEDEMAKTLLTLGPLIVIV 335

Query: 805 DASHESFQFYSTGIYFEPQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVQNSWGNTWGMDG 984
           DA   S+Q Y  GI  +  CSS + +H VLV G+   G   +  YW+V+NSWG+ WG+DG
Sbjct: 336 DA--VSWQDYLGGI-IQHHCSSGEANHAVLVTGFDKTG---STPYWIVRNSWGSAWGIDG 389

Query: 985 Y 987
           Y
Sbjct: 390 Y 390


>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
          Length = 463

 Score =  104 bits (259), Expect = 1e-22
 Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 15/216 (6%)
 Frame = +1

Query: 400  PHSVDWRE---KGYVTAVKNQGHCGSCWAFSATGALEGQMFRKTSKLIS--LSEQNLVDC 564
            P S DWR      +VT V+NQ  CGSC++F++ G +E ++   T+   +  LS Q +V C
Sbjct: 232  PASWDWRNVRGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291

Query: 565  SWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIP 744
            S  +  +GC GG           + GL  E  +PY G D  C  K        + Y  + 
Sbjct: 292  S--QYAQGCAGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVG 349

Query: 745  KQ----EKALMKA-VATVGPISVGIDASHESFQFYSTGIYF-----EPQCSSEDLDHGVL 894
                   +ALMK  +   GP++V  +  ++ F  Y  GIY      +P    E  +H VL
Sbjct: 350  GFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYRKGIYHHTGLRDPFNPFELTNHAVL 408

Query: 895  VVGYGVEGAHSNNKYWLVQNSWGNTWGMDGYIKMTK 1002
            +VGYG + A S   YW+V+NSWG +WG DGY ++ +
Sbjct: 409  LVGYGTDLA-SGMDYWIVKNSWGTSWGEDGYFRIRR 443


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,604,573
Number of extensions: 779686
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 18
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002479
         (1106 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                         448   e-123

>Sscrofa_Chr10 
||          Length = 79102373

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                            
Query: 450      tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 509
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911743 tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 31911684

                                                                            
Query: 510      gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 569
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911683 gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 31911624

                                                                            
Query: 570      gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 629
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911623 gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 31911564

                                                                  
Query: 630      ggacaacggaggcctggactcagaggaatcctatccatactttggaaagg 679
                |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31911563 ggacaatggaggcctggactcagaggaatcctatccatactttggaaagg 31911514



 Score =  335 bits (169), Expect = 3e-89
 Identities = 169/169 (100%)
 Strand = Plus / Minus

                                                                            
Query: 674      gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 733
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910761 gaaaggatggatcctgcaaatacaagccccagagttctgctgccaacgacactggttacg 31910702

                                                                            
Query: 734      tggatattccaaagcaggagaaagcgcttatgaaggccgtggcaactgtggggcccatct 793
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910701 tggatattccaaagcaggagaaagcgcttatgaaggccgtggcaactgtggggcccatct 31910642

                                                                 
Query: 794      ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 842
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31910641 ctgttggtatagatgcaagccatgaatccttccagttttacagcacagg 31910593



 Score =  323 bits (163), Expect = 1e-85
 Identities = 211/227 (92%)
 Strand = Plus / Plus

                                                                            
Query: 450      tcagggtcactgtggttcttgttgggcttttagtgccaccggcgccctcgaaggacagat 509
                ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 76999957 tcagggtcagtgtggttcttgttgggcttttagtgccaccggcgcccttgaaggacagat 77000016

                                                                            
Query: 510      gttccggaaaaccagcaaacttatttcactgagtgagcagaacctggtggactgctcttg 569
                ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 77000017 gttccggaaaaccggcaagcttgtttcactgagtgagcagaacctggtggactgttctcg 77000076

                                                                            
Query: 570      gcctgagggcaatgagggctgcaatggtggcctaatggataatgccttccagtacattaa 629
                |||| | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 77000077 gcctcaaggcaatcagggctgcaatggtggcctaatggataatgccttccagtacgtgaa 77000136

                                                               
Query: 630      ggacaacggaggcctggactcagaggaatcctatccatactttggaa 676
                |||||| |||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 77000137 ggacaatggaggcctggacacagaggaatcctatccgtaccttggaa 77000183



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 306      gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 365
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912281 gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 31912222

                                                                            
Query: 366      aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 425
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912221 aaaagtattccttgacgctggctctgctttgaccccccattctgtggattggagagagaa 31912162

                                             
Query: 426      aggctatgtaactgctgtgaagaatcagg 454
                |||||||||||||||||||||||||||||
Sbjct: 31912161 aggctatgtaactgctgtgaagaatcagg 31912133



 Score =  276 bits (139), Expect = 2e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                            
Query: 45       agatctttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 104
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912940 agatctttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctc 31912881

                                                                            
Query: 105      agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 164
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912880 agctgctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacaca 31912821

                                   
Query: 165      caggaaactctatggcttg 183
                |||||||||||||||||||
Sbjct: 31912820 caggaaactctatggcttg 31912802



 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Minus

                                                                            
Query: 183      gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 242
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912505 gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 31912446

                                                                            
Query: 243      caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31912445 caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 31912386

                    
Query: 303      catg 306
                ||||
Sbjct: 31912385 catg 31912382



 Score =  240 bits (121), Expect = 1e-60
 Identities = 150/156 (96%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                            
Query: 954      cagctggggtaatacttggggcatggatggctacataaagatgaccaaagatcagaac-a 1012
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 31907802 cagctggggtaatacttggggcatggatggctacataaagatgaccaaagatcagaacaa 31907743

                                                                            
Query: 1013     ccactgtggaatcgcccacatggccagttaccctgtggtctaaatctcnaagactggatt 1072
                ||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 31907742 ccactgtggaatcgccaccatggccagttaccctgtggtctaaatctcaaagactggatt 31907683

                                                    
Query: 1073     -agaacagaatagcccgaggac-aattctgtcttca 1106
                 ||||||||||||||||||||| |||||||||||||
Sbjct: 31907682 aagaacagaatagcccgaggacaaattctgtcttca 31907647



 Score =  212 bits (107), Expect = 3e-52
 Identities = 115/118 (97%)
 Strand = Plus / Minus

                                                                            
Query: 839      caggcatttattttgaaccacagtgcagcagcgaagacctggatcatggcgttctggtgg 898
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31909183 caggcatttattttgaaccacagtgcagcagcgaagatctggatcatggcgttctggtgg 31909124

                                                                          
Query: 899      tcggctatggcgttgaaggagcacactcaaataataagtattggcttgtncagaacag 956
                |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 31909123 tcggctatggcgttgaaggagcacactcaaataataagtattggcttgtcaagaacag 31909066



 Score =  165 bits (83), Expect = 6e-38
 Identities = 119/131 (90%)
 Strand = Plus / Plus

                                                                            
Query: 50       tttgaagcatgaatccttcactcctcctggctgccttttgcttgggaatagcctcagctg 109
                |||||| |||||| ||||||||| ||||| | ||| ||||||||||||||||||||||||
Sbjct: 76999075 tttgaaacatgaaaccttcactcttcctgaccgccctttgcttgggaatagcctcagctg 76999134

                                                                            
Query: 110      ctccaagacatgatcacagtttagatgcagactggtacaagtggaaggcaacacacagga 169
                |||||| || |||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 76999135 ctccaaaacttgatcaaaatttagatgcagactggtacaagtggaaggcaacacacggga 76999194

                           
Query: 170      aactctatggc 180
                 ||||||||||
Sbjct: 76999195 gactctatggc 76999205



 Score =  159 bits (80), Expect = 4e-36
 Identities = 113/124 (91%)
 Strand = Plus / Plus

                                                                            
Query: 183      gaatgaagaaggaaggcggagagccatatgggagaagaacatgaaaatgattgaacgaca 242
                ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||  ||
Sbjct: 76999489 gaatgaagaaggatggcggagagccgtatgggagaagaatatgaaaatgattgaactgca 76999548

                                                                            
Query: 243      caattgggaacacaggcaagggaaacatagcttcaccatggccatgaatgcctttggtga 302
                ||||  |||| |||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 76999549 caatcaggaatacagccaagggaaacatggcttcagcatggccatgaatgcctttggtga 76999608

                    
Query: 303      catg 306
                ||||
Sbjct: 76999609 catg 76999612



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                            
Query: 697      aagccccagagttctgctgccaacgacactggttacgtggatattccaaagcaggagaaa 756
                |||||| || ||||||||||||||||||| || | |||||| || ||  ||| |||||| 
Sbjct: 77000901 aagcccgagtgttctgctgccaacgacaccggcttcgtggacatccctcagcgggagaag 77000960

                                                                            
Query: 757      gcgcttatgaaggccgtggcaactgtggggcccatctctgttggtatagatgcaagccat 816
                || ||||||||||| || ||||||||||||||||||||||||| ||| |||||  |||||
Sbjct: 77000961 gcccttatgaaggcagtcgcaactgtggggcccatctctgttgctattgatgcgggccat 77001020

                              
Query: 817      gaatccttccagtt 830
                  ||| ||||||||
Sbjct: 77001021 tcatctttccagtt 77001034



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                            
Query: 306      gaccaatgaagaattcaggaagacgatgaatggttttcaaaaccagaagcacaagaaggg 365
                ||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||
Sbjct: 76999715 gaccaatgaagaattcaggcaggtgatgaatggctttcaaaaccagaagcacaagaaggg 76999774

                           
Query: 366      aaaagtattcc 376
                 ||||| ||||
Sbjct: 76999775 gaaagtgttcc 76999785



 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                              
Query: 1        cttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 46
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31913473 cttcagacgccagtggatctgcagctgttgactgcgcccgccgcag 31913428



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 839      caggcatttattttgaaccacagtgcagcagcgaagacctggatcatggcgttctggtgg 898
                |||||||||||| ||| ||| | ||||||||| |||||||||||||||| ||| ||||||
Sbjct: 77001763 caggcatttattatgatccagactgcagcagcaaagacctggatcatggtgttttggtgg 77001822

                                    
Query: 899      tcggctatggcgttgaagga 918
                | ||||||||| ||||||||
Sbjct: 77001823 ttggctatggctttgaagga 77001842


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,176,353
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 15
Length of query: 1106
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1085
Effective length of database: 2,808,413,156
Effective search space: 3047128274260
Effective search space used: 3047128274260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)