Animal-Genome cDNA 20110601C-002482


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039443.1| N-acetylneuraminate lyase [Bos taurus].           587   e-168

>ref|NP_001039443.1| N-acetylneuraminate lyase [Bos taurus].
          Length = 320

 Score =  587 bits (1513), Expect = e-168
 Identities = 295/316 (93%), Positives = 304/316 (96%)
 Frame = +1

Query: 82   PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
            PKKKLQGLVAATITPMTEHGEINFSVIG+YVDYLVE QGVKN+FVNGTTGEGLSLSISER
Sbjct: 4    PKKKLQGLVAATITPMTEHGEINFSVIGRYVDYLVEEQGVKNVFVNGTTGEGLSLSISER 63

Query: 262  CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
            CQVAEEWVTKG+NKLDQIVIHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPWNKD 
Sbjct: 64   CQVAEEWVTKGKNKLDQIVIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWNKDV 123

Query: 442  LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
            LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGIQDKIP+FQGLKFSDTDLLDFG
Sbjct: 124  LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGIQDKIPSFQGLKFSDTDLLDFG 183

Query: 622  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
            QCVDQN QRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLG+KT QMLEAFERKDFSSAL
Sbjct: 184  QCVDQNRQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTKQMLEAFERKDFSSAL 243

Query: 802  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 981
            NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNA+AKLKSL
Sbjct: 244  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAEAKLKSL 303

Query: 982  DVLSFTNLKDGNLEAC 1029
            D LS T+LKDGN+EAC
Sbjct: 304  DFLSCTDLKDGNMEAC 319


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,170,376
Number of extensions: 1243587
Number of successful extensions: 3674
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3672
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_547433.2| PREDICTED: similar to N-acetylneuraminate pyruv...   577   e-164

>ref|XP_547433.2| PREDICTED: similar to N-acetylneuraminate pyruvate lyase [Canis
            familiaris].
          Length = 507

 Score =  577 bits (1486), Expect = e-164
 Identities = 291/316 (92%), Positives = 300/316 (94%)
 Frame = +1

Query: 82   PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
            PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVE QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 191  PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEEQGVKNIFVNGTTGEGLSLSVSER 250

Query: 262  CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
             +VAEEWVTKGRNKLDQ+VIHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPWNKD 
Sbjct: 251  RRVAEEWVTKGRNKLDQVVIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWNKDV 310

Query: 442  LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
            LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG
Sbjct: 311  LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 370

Query: 622  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
            QCVDQN QRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLG+KTNQMLEAFE+KDFSSAL
Sbjct: 371  QCVDQNRQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSSAL 430

Query: 802  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 981
            NHQFCIQRFINFV+KLGFGVSQTKAIMTLVSGIPMGPPR PLQKASREF DNAKAKLKSL
Sbjct: 431  NHQFCIQRFINFVLKLGFGVSQTKAIMTLVSGIPMGPPRPPLQKASREFIDNAKAKLKSL 490

Query: 982  DVLSFTNLKDGNLEAC 1029
            D L  T+LKDGN E+C
Sbjct: 491  DFLLSTDLKDGNFESC 506


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,418,001
Number of extensions: 1283434
Number of successful extensions: 3672
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3671
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_110396.1| N-acetylneuraminate lyase isoform 1 [Homo sapie...   566   e-161
Alignment   gi|NP_001186985.1| N-acetylneuraminate lyase isoform 3 [Homo sa...   461   e-130
Alignment   gi|NP_001186979.1| N-acetylneuraminate lyase isoform 2 [Homo sa...   436   e-122
Alignment   gi|NP_001186981.1| N-acetylneuraminate lyase isoform 5 [Homo sa...   385   e-107
Alignment   gi|NP_001186980.1| N-acetylneuraminate lyase isoform 4 [Homo sa...   362   e-100
Alignment   gi|NP_612422.2| probable 4-hydroxy-2-oxoglutarate aldolase, mit...    71   3e-12

>ref|NP_110396.1| N-acetylneuraminate lyase isoform 1 [Homo sapiens].
          Length = 320

 Score =  566 bits (1460), Expect = e-161
 Identities = 286/315 (90%), Positives = 301/315 (95%)
 Frame = +1

Query: 82   PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
            PKKKLQGLVAATITPMTE+GEINFSVIGQYVDYLV+ QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 4    PKKKLQGLVAATITPMTENGEINFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSER 63

Query: 262  CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
             QVAEEWVTKG++KLDQ++IHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPW KD 
Sbjct: 64   RQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDI 123

Query: 442  LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
            LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGI DKIPTFQGLKFSDTDLLDFG
Sbjct: 124  LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFG 183

Query: 622  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
            QCVDQN Q+QFAFLFGVDEQLLSALVMGATGAVGSTYNYLG+KTNQMLEAFE+KDFS AL
Sbjct: 184  QCVDQNRQQQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSLAL 243

Query: 802  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 981
            N+QFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTD+A+AKLKSL
Sbjct: 244  NYQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDSAEAKLKSL 303

Query: 982  DVLSFTNLKDGNLEA 1026
            D LSFT+LKDGNLEA
Sbjct: 304  DFLSFTDLKDGNLEA 318


>ref|NP_001186985.1| N-acetylneuraminate lyase isoform 3 [Homo sapiens].
          Length = 284

 Score =  461 bits (1185), Expect = e-130
 Identities = 231/256 (90%), Positives = 243/256 (94%)
 Frame = +1

Query: 82  PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
           PKKKLQGLVAATITPMTE+GEINFSVIGQYVDYLV+ QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 4   PKKKLQGLVAATITPMTENGEINFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSER 63

Query: 262 CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
            QVAEEWVTKG++KLDQ++IHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPW KD 
Sbjct: 64  RQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDI 123

Query: 442 LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
           LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGI DKIPTFQGLKFSDTDLLDFG
Sbjct: 124 LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFG 183

Query: 622 QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
           QCVDQN Q+QFAFLFGVDEQLLSALVMGATGAVGSTYNYLG+KTNQMLEAFE+KDFS AL
Sbjct: 184 QCVDQNRQQQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSLAL 243

Query: 802 NHQFCIQRFINFVVKL 849
           N+QFCIQRFINFVVKL
Sbjct: 244 NYQFCIQRFINFVVKL 259


>ref|NP_001186979.1| N-acetylneuraminate lyase isoform 2 [Homo sapiens].
          Length = 301

 Score =  436 bits (1120), Expect = e-122
 Identities = 219/242 (90%), Positives = 230/242 (95%)
 Frame = +1

Query: 301  KLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDNLINFLKEVXXXXX 480
            +LDQ++IHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPW KD LINFLKEV     
Sbjct: 58   RLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDILINFLKEVAAAAP 117

Query: 481  XLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFGQCVDQNHQRQFAF 660
             LPFYYYHIPALTGVKIRAEELLDGI DKIPTFQGLKFSDTDLLDFGQCVDQN Q+QFAF
Sbjct: 118  ALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFGQCVDQNRQQQFAF 177

Query: 661  LFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSALNHQFCIQRFINFV 840
            LFGVDEQLLSALVMGATGAVGSTYNYLG+KTNQMLEAFE+KDFS ALN+QFCIQRFINFV
Sbjct: 178  LFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSLALNYQFCIQRFINFV 237

Query: 841  VKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSLDVLSFTNLKDGNL 1020
            VKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTD+A+AKLKSLD LSFT+LKDGNL
Sbjct: 238  VKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDSAEAKLKSLDFLSFTDLKDGNL 297

Query: 1021 EA 1026
            EA
Sbjct: 298  EA 299


>ref|NP_001186981.1| N-acetylneuraminate lyase isoform 5 [Homo sapiens].
          Length = 230

 Score =  385 bits (989), Expect = e-107
 Identities = 194/215 (90%), Positives = 203/215 (94%)
 Frame = +1

Query: 82  PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
           PKKKLQGLVAATITPMTE+GEINFSVIGQYVDYLV+ QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 4   PKKKLQGLVAATITPMTENGEINFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSER 63

Query: 262 CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
            QVAEEWVTKG++KLDQ++IHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPW KD 
Sbjct: 64  RQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDI 123

Query: 442 LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
           LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGI DKIPTFQGLKFSDTDLLDFG
Sbjct: 124 LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFG 183

Query: 622 QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGS 726
           QCVDQN Q+QFAFLFGVDEQLLSALVMGATGAVGS
Sbjct: 184 QCVDQNRQQQFAFLFGVDEQLLSALVMGATGAVGS 218


>ref|NP_001186980.1| N-acetylneuraminate lyase isoform 4 [Homo sapiens].
          Length = 240

 Score =  362 bits (929), Expect = e-100
 Identities = 191/256 (74%), Positives = 200/256 (78%)
 Frame = +1

Query: 82  PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
           PKKKLQGLVAATITPMTE+GEINFSVIGQYVDYLV+ QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 4   PKKKLQGLVAATITPMTENGEINFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSER 63

Query: 262 CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
            QVAEEWVTKG++KLDQ++IHVGALSLKESQELAQHAA+IGADGIAVIAPFFLKPW KD 
Sbjct: 64  RQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDI 123

Query: 442 LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
           LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGI DKIPTFQGLKFSDTDLLDFG
Sbjct: 124 LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFG 183

Query: 622 QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
           QCVDQN Q+QFAFLFGVDE                                         
Sbjct: 184 QCVDQNRQQQFAFLFGVDE----------------------------------------- 202

Query: 802 NHQFCIQRFINFVVKL 849
              FCIQRFINFVVKL
Sbjct: 203 ---FCIQRFINFVVKL 215


>ref|NP_612422.2| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform 1
           [Homo sapiens].
          Length = 327

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 3/288 (1%)
 Frame = +1

Query: 85  KKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISERC 264
           K  + G+     TP T   E+++  + + +  L      +   V G+ GE   L+ SER 
Sbjct: 32  KVDIAGIYPPVTTPFTATAEVDYGKLEENLHKLGTFP-FRGFVVQGSNGEFPFLTSSERL 90

Query: 265 QVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKP-WNKDN 441
           +V    V +   K   ++   G  S + + E+    A++GAD   V+ P + +   +   
Sbjct: 91  EVVSR-VRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAA 149

Query: 442 LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
           LI+   +V      +P   Y +PA TG+ +  + ++   Q   P   G+K S  D+   G
Sbjct: 150 LIHHYTKVADLSP-IPVVLYSVPANTGLDLPVDAVVTLSQH--PNIVGMKDSGGDVTRIG 206

Query: 622 QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQM--LEAFERKDFSS 795
             V +  ++ F  L G    L+++  +GA G V +  N LG +  Q+  L    + + + 
Sbjct: 207 LIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQ 266

Query: 796 ALNHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKAS 939
            L H+       N  V   FG+   K IM    G   GP R PLQ+ S
Sbjct: 267 KLQHRLIEP---NAAVTRRFGIPGLKKIMDWF-GYYGGPCRAPLQELS 310


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,540,306
Number of extensions: 1275804
Number of successful extensions: 3455
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3447
Number of HSP's successfully gapped: 6
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_083025.1| N-acetylneuraminate lyase [Mus musculus].            521   e-148

>ref|NP_083025.1| N-acetylneuraminate lyase [Mus musculus].
          Length = 320

 Score =  521 bits (1341), Expect = e-148
 Identities = 261/311 (83%), Positives = 289/311 (92%)
 Frame = +1

Query: 82   PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
            PKKKL+GLVAATITPMTE+GEINF VIGQYVDYLV+ QGVKNIFVNGTTGEGLSLS+SER
Sbjct: 4    PKKKLRGLVAATITPMTENGEINFPVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSER 63

Query: 262  CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
             QVAEEWV +GRNKLDQ+VIHVGAL++KESQELAQHAA+IGADGIAVIAPFF K  NKD 
Sbjct: 64   RQVAEEWVNQGRNKLDQVVIHVGALNVKESQELAQHAAEIGADGIAVIAPFFFKSQNKDA 123

Query: 442  LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
            LI+FL+EV      LPFYYYH+P++TGVKIRAEELLDGIQDKIPTFQGLKF+DTDLLDFG
Sbjct: 124  LISFLREVAAAAPTLPFYYYHMPSMTGVKIRAEELLDGIQDKIPTFQGLKFTDTDLLDFG 183

Query: 622  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
            QCVDQNHQRQFA LFGVDEQLLSALVMGATGAVGSTYNYLG+KTNQMLEAFE+KD +SAL
Sbjct: 184  QCVDQNHQRQFALLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDLASAL 243

Query: 802  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 981
            ++QF IQRFIN+V+KLGFGVSQTKAIMTLVSGIPMGPPRLPLQKA++EFT  A+AKLKSL
Sbjct: 244  SYQFRIQRFINYVIKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKATQEFTAKAEAKLKSL 303

Query: 982  DVLSFTNLKDG 1014
            D LS  ++K+G
Sbjct: 304  DFLSSPSVKEG 314


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,175,008
Number of extensions: 1075813
Number of successful extensions: 2826
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2824
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999236.1| N-acetylneuraminate lyase [Sus scrofa].              613   e-176
Alignment   gi|XP_003357618.1| PREDICTED: ATP-dependent RNA helicase A-like...    51   1e-06

>ref|NP_999236.1| N-acetylneuraminate lyase [Sus scrofa].
          Length = 319

 Score =  613 bits (1580), Expect = e-176
 Identities = 309/316 (97%), Positives = 310/316 (98%)
 Frame = +1

Query: 82   PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 261
            PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER
Sbjct: 4    PKKKLQGLVAATITPMTEHGEINFSVIGQYVDYLVEVQGVKNIFVNGTTGEGLSLSISER 63

Query: 262  CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 441
            CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN
Sbjct: 64   CQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADGIAVIAPFFLKPWNKDN 123

Query: 442  LINFLKEVXXXXXXLPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 621
            LINFLKEV      LPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG
Sbjct: 124  LINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGIQDKIPTFQGLKFSDTDLLDFG 183

Query: 622  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 801
            QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL
Sbjct: 184  QCVDQNHQRQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGRKTNQMLEAFERKDFSSAL 243

Query: 802  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 981
            NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL
Sbjct: 244  NHQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASREFTDNAKAKLKSL 303

Query: 982  DVLSFTNLKDGNLEAC 1029
            DVLSFT+LKDGNLEAC
Sbjct: 304  DVLSFTDLKDGNLEAC 319


>ref|XP_003357618.1| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa].
          Length = 216

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 142 EINFSVIGQYVDYLVEVQGVKNIF 213
           EINFSVIGQYVDYLVEVQGVKNIF
Sbjct: 186 EINFSVIGQYVDYLVEVQGVKNIF 209


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,976,957
Number of extensions: 792347
Number of successful extensions: 2264
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2262
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002482
         (1375 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892421.2| Sus scrofa unplaced genomic scaffold ChrUScaf308       971   0.0  
Sscrofa_Chr09                                                         971   0.0  

>gb|GL892421.2| Sus scrofa unplaced genomic scaffold ChrUScaf308
          Length = 105442

 Score =  971 bits (490), Expect = 0.0
 Identities = 519/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                         
Query: 847   ctaggttttggagtgtcacagaccaaagccataatgactcttgtctctgggattccaatg 906
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37026 ctaggttttggagtgtcacagaccaaagccataatgactcttgtctctgggattccaatg 37085

                                                                         
Query: 907   ggcccaccccggcttccactacagaaagcctccagggagtttactgataatgcaaaagct 966
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37086 ggcccaccccggcttccactacagaaagcctccagggagtttactgataatgcaaaagct 37145

                                                                         
Query: 967   aaactgaagagcctggatgtcctttctttcactaatttaaaagatggaaacttggaagct 1026
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 37146 aaactgaagagcctggatgtcctttctttcactgatttaaaagatggaaacttggaagct 37205

                                                                         
Query: 1027  tgttagctagtgcctctctatcaaataagggtgcgtacattgagatgtaattc-ccttga 1085
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 37206 tgttagctagtgcctctctatcaaataagggtgcgtacattgagatgtaattcaccttga 37265

                                                                         
Query: 1086  gtagtgcattccttctcaaggactttttagatgagcttgaactanagtttcctagcaaat 1145
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 37266 gtagtgcattccttctcaaggactttttagatgagcttgaactaaagtttcctagcaaat 37325

                                                                         
Query: 1146  gagatctttatgtcaatcaacaagtatttaaatacctactacgatcctttaaaagttttc 1205
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37326 gaaatctttatgtcaatcaacaagtatttaaatacctactacgatcctttaaaagttttc 37385

                                                                         
Query: 1206  atttgtgaaggggcaaaaattctaaaaggggtcaagagccctaagtcattccgtgtttca 1265
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 37386 atttgtgaaggggcaaaaattctaaaaggggtcaagagccctaagtcattcagtgtttca 37445

                                                                         
Query: 1266  caaaattttgtgaagaaatttttgcttctatggatgagatanaatcccgaggaagattgt 1325
             ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 37446 caaaattttgtgaagaaatttttgcttctatggatgagatagaatcaagaggaagattgt 37505

                                                             
Query: 1326  aattgattacctccatctgtctttgggagctcccattatcttgatttc 1373
             ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 37506 aattgattagctccatctgtctttgggagctcccattatcttgatttc 37553



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                         
Query: 530   ttcgtgcggaagagttgttggatgggattcaggataagattcccaccttccaagggctga 589
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28987 ttcgtgcggaagagttgttggatgggattcaggataagattcccaccttccaagggctga 29046

                                                                         
Query: 590   agttcagtgacacggatctcttagacttcgggcagtgtgttgatcagaatcaccagcgac 649
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29047 agttcagtgacacggatctcttagacttcgggcagtgtgttgatcagaatcaccagcgac 29106

                                          
Query: 650   agtttgctttcctgtttggggtagatgag 678
             |||||||||||||||||||||||||||||
Sbjct: 29107 agtttgctttcctgtttggggtagatgag 29135



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                         
Query: 435   agataacctgattaatttcctgaaggaggtggctgctgctgcccctgctttgccgtttta 494
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27695 agataacctgattaatttcctgaaggaggtggctgctgctgcccctgctttgccgtttta 27754

                                                
Query: 495   ctactatcacattcctgccttgacaggggtaaaga 529
             |||||||||||||||||||||||||||||||||||
Sbjct: 27755 ctactatcacattcctgccttgacaggggtaaaga 27789



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                         
Query: 214   gtgaatggcacgacgggagaaggcctgtccctgagcatctcagagcgctgccaggtcgca 273
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16605 gtgaatggcacgacgggagaaggcctgtccctgagcatctcagagcgctgccaggtcgca 16664

                                            
Query: 274   gaggagtgggtgacaaaaggaaggaacaagt 304
             |||||||||||||||||||||||||||||||
Sbjct: 16665 gaggagtgggtgacaaaaggaaggaacaagt 16695



 Score =  174 bits (88), Expect = 8e-41
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                         
Query: 723   cagtacgtataactacctgggaagaaagacaaaccagatgttggaggcttttgaacgaaa 782
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30862 cagtacgtataactacctgggaagaaagacaaaccagatgttggaggcttttgaacgaaa 30921

                                         
Query: 783   ggacttctcttcagccctgaatcatcag 810
             ||||||||||||||||||||||||||||
Sbjct: 30922 ggacttctcttcagccctgaatcatcag 30949



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                        
Query: 55   gactttgtcagcagctcaatggcctccccgaagaagaaacttcaaggtctcgtggccgcg 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8654 gactttgtcagcagctcaatggcctccccgaagaagaaacttcaaggtctcgtggccgcg 8713

                                      
Query: 115  accatcacgccgatgactgagcatgg 140
            ||||||||||||||||||||||||||
Sbjct: 8714 accatcacgccgatgactgagcatgg 8739



 Score =  153 bits (77), Expect = 3e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                         
Query: 360   ggcccaacatgcagcaaaaataggagccgatggcattgctgtcattgcacctttctttct 419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27111 ggcccaacatgcagcaaaaataggagccgatggcattgctgtcattgcacctttctttct 27170

                              
Query: 420   caagccctggaacaaag 436
             |||||||||||||||||
Sbjct: 27171 caagccctggaacaaag 27187



 Score =  149 bits (75), Expect = 5e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                         
Query: 140   gagagatcaacttttcagtcatcggtcagtatgtggattatctcgtggaagtacagggag 199
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14016 gagagatcaacttttcagtcatcggtcagtatgtggattatctcgtggaagtacagggag 14075

                            
Query: 200   tgaagaatatctttg 214
             |||||||||||||||
Sbjct: 14076 tgaagaatatctttg 14090



 Score =  117 bits (59), Expect = 2e-23
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                        
Query: 303   gttggatcaaatagtaattcatgtaggagcactgagcttgaaggagtctcaagaactgg 361
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19697 gttggatcaaatagtaattcatgtaggagcactgagcttgaaggagtctcaagaactgg 19755



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                              
Query: 677   agcaactattgagtgctctggtgatgggagcaaccggagccgtgggcag 725
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29261 agcaactattgagtgctctggtgatgggagcaaccggagccgtgggcag 29309



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                          
Query: 808   cagttttgcattcaaagatttatcaactttgtggtcaaactaggt 852
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34282 cagttttgcattcaaagatttatcaactttgtggtcaaactaggt 34326


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  971 bits (490), Expect = 0.0
 Identities = 519/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                             
Query: 847       ctaggttttggagtgtcacagaccaaagccataatgactcttgtctctgggattccaatg 906
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136441150 ctaggttttggagtgtcacagaccaaagccataatgactcttgtctctgggattccaatg 136441209

                                                                             
Query: 907       ggcccaccccggcttccactacagaaagcctccagggagtttactgataatgcaaaagct 966
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136441210 ggcccaccccggcttccactacagaaagcctccagggagtttactgataatgcaaaagct 136441269

                                                                             
Query: 967       aaactgaagagcctggatgtcctttctttcactaatttaaaagatggaaacttggaagct 1026
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 136441270 aaactgaagagcctggatgtcctttctttcactgatttaaaagatggaaacttggaagct 136441329

                                                                             
Query: 1027      tgttagctagtgcctctctatcaaataagggtgcgtacattgagatgtaattc-ccttga 1085
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 136441330 tgttagctagtgcctctctatcaaataagggtgcgtacattgagatgtaattcaccttga 136441389

                                                                             
Query: 1086      gtagtgcattccttctcaaggactttttagatgagcttgaactanagtttcctagcaaat 1145
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 136441390 gtagtgcattccttctcaaggactttttagatgagcttgaactaaagtttcctagcaaat 136441449

                                                                             
Query: 1146      gagatctttatgtcaatcaacaagtatttaaatacctactacgatcctttaaaagttttc 1205
                 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136441450 gaaatctttatgtcaatcaacaagtatttaaatacctactacgatcctttaaaagttttc 136441509

                                                                             
Query: 1206      atttgtgaaggggcaaaaattctaaaaggggtcaagagccctaagtcattccgtgtttca 1265
                 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 136441510 atttgtgaaggggcaaaaattctaaaaggggtcaagagccctaagtcattcagtgtttca 136441569

                                                                             
Query: 1266      caaaattttgtgaagaaatttttgcttctatggatgagatanaatcccgaggaagattgt 1325
                 ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 136441570 caaaattttgtgaagaaatttttgcttctatggatgagatagaatcaagaggaagattgt 136441629

                                                                 
Query: 1326      aattgattacctccatctgtctttgggagctcccattatcttgatttc 1373
                 ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 136441630 aattgattagctccatctgtctttgggagctcccattatcttgatttc 136441677



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                             
Query: 214       gtgaatggcacgacgggagaaggcctgtccctgagcatctcagagcgctgccaggtcgca 273
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136437376 gtgaatggcacgacgggagaaggcctgtccctgagcatctcagagcgctgccaggtcgca 136437317

                                                
Query: 274       gaggagtgggtgacaaaaggaaggaacaagt 304
                 |||||||||||||||||||||||||||||||
Sbjct: 136437316 gaggagtgggtgacaaaaggaaggaacaagt 136437286



 Score =  149 bits (75), Expect = 5e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                             
Query: 140       gagagatcaacttttcagtcatcggtcagtatgtggattatctcgtggaagtacagggag 199
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136439872 gagagatcaacttttcagtcatcggtcagtatgtggattatctcgtggaagtacagggag 136439813

                                
Query: 200       tgaagaatatctttg 214
                 |||||||||||||||
Sbjct: 136439812 tgaagaatatctttg 136439798



 Score =  117 bits (59), Expect = 2e-23
 Identities = 59/59 (100%)
 Strand = Plus / Minus

                                                                            
Query: 303       gttggatcaaatagtaattcatgtaggagcactgagcttgaaggagtctcaagaactgg 361
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136434131 gttggatcaaatagtaattcatgtaggagcactgagcttgaaggagtctcaagaactgg 136434073



 Score =  109 bits (55), Expect = 4e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1         gagcgcgcctgggcggcgggcgcggagcgccggagactgagcagcagcgtgtggg 55
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136400163 gagcgcgcctgggcggcgggcgcggagcgccggagactgagcagcagcgtgtggg 136400109


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,112,791
Number of extensions: 370
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 16
Length of query: 1375
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1354
Effective length of database: 2,808,413,156
Effective search space: 3802591413224
Effective search space used: 3802591413224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)