Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092411.1| acyl-CoA thioesterase 4 [Bos taurus]. 444 e-125
Alignment gi|XP_002691046.1| PREDICTED: acyl-CoA thioesterase 4-like [Bos... 438 e-123
Alignment gi|XP_590080.3| PREDICTED: acyl-CoA thioesterase 4-like [Bos ta... 438 e-123
Alignment gi|XP_002691047.1| PREDICTED: acyl-CoA thioesterase 6-like [Bos... 370 e-103
Alignment gi|XP_594692.2| PREDICTED: acyl-CoA thioesterase 6-like [Bos ta... 370 e-103
Alignment gi|NP_001095408.1| acyl-coenzyme A thioesterase 2, mitochondria... 360 e-99
Alignment gi|XP_002691045.1| PREDICTED: acyl-CoA thioesterase 2-like [Bos... 358 4e-99
Alignment gi|XP_001253040.1| PREDICTED: acyl-CoA thioesterase 2-like [Bos... 358 4e-99
Alignment gi|XP_002689916.1| PREDICTED: bile acid Coenzyme A: amino acid ... 189 3e-48
Alignment gi|XP_609128.3| PREDICTED: bile acid Coenzyme A: amino acid N-a... 189 3e-48
>ref|NP_001092411.1| acyl-CoA thioesterase 4 [Bos taurus].
Length = 416
Score = 444 bits (1142), Expect = e-125
Identities = 223/295 (75%), Positives = 239/295 (81%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M TVTLEPAG C WDEPVRIAVRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 1 MTVTVTLEPAGRCRWDEPVRIAVRGLAPGQPVTLRASLRDEKGALFRAHARYCADATGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWALEPEKP WRF+KRDVQTPF VELEV DGHEP+A+RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLFWALEPEKPFWRFLKRDVQTPFVVELEVLDGHEPKAQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPPGSGPFPGIIDIFGIGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFATLALAYYDF+DLPKKFD IHL+YFEEALCYMLQH+Q+K CLS
Sbjct: 181 HGFATLALAYYDFDDLPKKFDMIHLEYFEEALCYMLQHSQIKGTRIGLLGISLGADICLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLKNISATVSINGSGFS ++ I+YK+++IPPLG DLRR+KVAFSGLLDIVD+
Sbjct: 241 MASFLKNISATVSINGSGFSGHRVIHYKDSNIPPLGHDLRRVKVAFSGLLDIVDV 295
>ref|XP_002691046.1| PREDICTED: acyl-CoA thioesterase 4-like [Bos taurus].
Length = 416
Score = 438 bits (1126), Expect = e-123
Identities = 221/295 (74%), Positives = 233/295 (78%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M ATVTLEPAG C WDEPVRI VRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 1 MVATVTLEPAGRCRWDEPVRITVRGLAPGQPVTLRASLRDEKGALFRAHARYCADATGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RA ALGGSF GLEPMGLFWALEPEKP WRF+KRDVQTPFAVELEV DGHEPE +RLL
Sbjct: 61 DLERALALGGSFAGLEPMGLFWALEPEKPFWRFLKRDVQTPFAVELEVLDGHEPETQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPPGSGPFPGIIDIYGIGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFATLA+AYY FEDLPKKFD I LDYFEEALCYMLQH Q+K CLS
Sbjct: 181 HGFATLAVAYYSFEDLPKKFDTIDLDYFEEALCYMLQHAQIKGPGIGLLGISLGADICLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLKN+SATV+INGSGF+ NK +YYKE IPPLG DLRR+KVAFSGL+DIVD+
Sbjct: 241 MASFLKNVSATVTINGSGFNGNKAMYYKENCIPPLGHDLRRVKVAFSGLVDIVDV 295
>ref|XP_590080.3| PREDICTED: acyl-CoA thioesterase 4-like [Bos taurus].
Length = 416
Score = 438 bits (1126), Expect = e-123
Identities = 221/295 (74%), Positives = 233/295 (78%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M ATVTLEPAG C WDEPVRI VRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 1 MVATVTLEPAGRCRWDEPVRITVRGLAPGQPVTLRASLRDEKGALFRAHARYCADATGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RA ALGGSF GLEPMGLFWALEPEKP WRF+KRDVQTPFAVELEV DGHEPE +RLL
Sbjct: 61 DLERALALGGSFAGLEPMGLFWALEPEKPFWRFLKRDVQTPFAVELEVLDGHEPETQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPPGSGPFPGIIDIYGIGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFATLA+AYY FEDLPKKFD I LDYFEEALCYMLQH Q+K CLS
Sbjct: 181 HGFATLAVAYYSFEDLPKKFDTIDLDYFEEALCYMLQHAQIKGPGIGLLGISLGADICLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLKN+SATV+INGSGF+ NK +YYKE IPPLG DLRR+KVAFSGL+DIVD+
Sbjct: 241 MASFLKNVSATVTINGSGFNGNKAMYYKENCIPPLGHDLRRVKVAFSGLVDIVDV 295
>ref|XP_002691047.1| PREDICTED: acyl-CoA thioesterase 6-like [Bos taurus].
Length = 421
Score = 370 bits (950), Expect = e-103
Identities = 193/295 (65%), Positives = 214/295 (72%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MA TVTLEPAG C WDEPVRI VRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 1 MAVTVTLEPAGRCRWDEPVRITVRGLAPGQPVTLRASLRDEKGALFRAHARYCADAAGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWA+EPEKPL R VKRDVQTPFAVELEV DGHEPEA+RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLFWAMEPEKPLLRLVKRDVQTPFAVELEVLDGHEPEAQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVH+RDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHKRDFLAPGVRREPVRAGRVRATLFLPPGSKPFPGILDLFGSSGGLCEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFA LALAY+ FEDLP+ + + L+YFEEA+ +MLQH +VK CLS
Sbjct: 181 HGFAVLALAYFRFEDLPEHLNDVCLEYFEEAVNFMLQHPKVKGPGVGLLGFSKGGDLCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK I+AT+ IN + P++YK+ IP L DL + + SG L+ VDI
Sbjct: 241 MASFLKGITATIVINACVANTLAPLHYKDMIIPELSYDLEKYTITESGFLNFVDI 295
>ref|XP_594692.2| PREDICTED: acyl-CoA thioesterase 6-like [Bos taurus].
Length = 421
Score = 370 bits (950), Expect = e-103
Identities = 193/295 (65%), Positives = 214/295 (72%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MA TVTLEPAG C WDEPVRI VRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 1 MAVTVTLEPAGRCRWDEPVRITVRGLAPGQPVTLRASLRDEKGALFRAHARYCADAAGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWA+EPEKPL R VKRDVQTPFAVELEV DGHEPEA+RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLFWAMEPEKPLLRLVKRDVQTPFAVELEVLDGHEPEAQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVH+RDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHKRDFLAPGVRREPVRAGRVRATLFLPPGSKPFPGILDLFGSSGGLCEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFA LALAY+ FEDLP+ + + L+YFEEA+ +MLQH +VK CLS
Sbjct: 181 HGFAVLALAYFRFEDLPEHLNDVCLEYFEEAVNFMLQHPKVKGPGVGLLGFSKGGDLCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK I+AT+ IN + P++YK+ IP L DL + + SG L+ VDI
Sbjct: 241 MASFLKGITATIVINACVANTLAPLHYKDMIIPELSYDLEKYTITESGFLNFVDI 295
>ref|NP_001095408.1| acyl-coenzyme A thioesterase 2, mitochondrial [Bos taurus].
Length = 464
Score = 360 bits (924), Expect = e-99
Identities = 187/295 (63%), Positives = 208/295 (70%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
+ TVTLEPAG C WDEPVRI VRGLAPGQ VTLR+SLRDEKGALFRAHARYCADA G L
Sbjct: 44 LVTTVTLEPAGRCRWDEPVRITVRGLAPGQPVTLRASLRDEKGALFRAHARYCADAAGLL 103
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWA+EPEKP R VKRDVQTPFAVELEV D HEP RLL
Sbjct: 104 DLERAPALGGSFTGLEPMGLFWAMEPEKPFLRLVKRDVQTPFAVELEVLDNHEPRVGRLL 163
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GR VHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 164 GRVVHERDFLAPGVRREPVRAGRVRATLFLPPEPGPFPGIVDILGAGGGLLEYRASLLAG 223
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA +ALAYY++EDLPK + +HL+YFEEA+ Y+L H QVK CLS
Sbjct: 224 KGFAVMALAYYNYEDLPKGLENLHLEYFEEAVNYLLNHPQVKGPGVGLLGISKGGELCLS 283
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK ISA V INGS ++YK +PP+G + R+K+ G +DIV++
Sbjct: 284 MASFLKGISAAVIINGSVAYVGGNLHYKGEIMPPVGFNQNRIKMTKDGFVDIVEV 338
>ref|XP_002691045.1| PREDICTED: acyl-CoA thioesterase 2-like [Bos taurus].
Length = 421
Score = 358 bits (919), Expect = 4e-99
Identities = 189/295 (64%), Positives = 208/295 (70%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M TV LEPAG C WDE V I V GLAP Q VTLRSSLRDEKGALFRAHARYCADA G L
Sbjct: 1 MTVTVMLEPAGRCRWDERVHITVSGLAPRQPVTLRSSLRDEKGALFRAHARYCADAAGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWALEPEKPL R VKRDVQTPF VELEV DGHEP A+RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLFWALEPEKPLLRLVKRDVQTPFVVELEVVDGHEPGAQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPPEPAPFPGIVDISAAGGGFLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAYY++EDLPK +HL+YFEEA+ Y+L H QVK CLS
Sbjct: 181 KGFAVLALAYYNYEDLPKSLRHVHLEYFEEAVNYLLNHPQVKGPGVGLLGISKGGELCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK ISA V INGS + ++YK ++PP+G + R+K+ G +DIV++
Sbjct: 241 MASFLKGISAAVIINGSVHNVWGTLHYKGETLPPVGFNQNRIKMTKDGFVDIVEV 295
>ref|XP_001253040.1| PREDICTED: acyl-CoA thioesterase 2-like [Bos taurus].
Length = 421
Score = 358 bits (919), Expect = 4e-99
Identities = 189/295 (64%), Positives = 208/295 (70%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M TV LEPAG C WDE V I V GLAP Q VTLRSSLRDEKGALFRAHARYCADA G L
Sbjct: 1 MTVTVMLEPAGRCRWDERVHITVSGLAPRQPVTLRSSLRDEKGALFRAHARYCADAAGLL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGLFWALEPEKPL R VKRDVQTPF VELEV DGHEP A+RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLFWALEPEKPLLRLVKRDVQTPFVVELEVVDGHEPGAQRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPPEPAPFPGIVDISAAGGGFLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAYY++EDLPK +HL+YFEEA+ Y+L H QVK CLS
Sbjct: 181 KGFAVLALAYYNYEDLPKSLRHVHLEYFEEAVNYLLNHPQVKGPGVGLLGISKGGELCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK ISA V INGS + ++YK ++PP+G + R+K+ G +DIV++
Sbjct: 241 MASFLKGISAAVIINGSVHNVWGTLHYKGETLPPVGFNQNRIKMTKDGFVDIVEV 295
>ref|XP_002689916.1| PREDICTED: bile acid Coenzyme A: amino acid N-acyltransferase-like
[Bos taurus].
Length = 419
Score = 189 bits (480), Expect = 3e-48
Identities = 110/292 (37%), Positives = 164/292 (56%), Gaps = 4/292 (1%)
Frame = +2
Query: 56 VTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLAR 235
+T+ PA + DEPV I GL P Q VTL ++++D+KG L+R+ A Y A+ G+LDL R
Sbjct: 4 LTVTPASALA-DEPVHIQATGLPPLQMVTLIATMKDDKGNLYRSRAFYRANEAGELDLKR 62
Query: 236 APALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG---HEPEAERLL 403
PA+GG ++G+ PMGL W+L+PE+P R +KR+V TP + L+++D H+ +
Sbjct: 63 DPAVGGHYMGVHPMGLLWSLKPERPFDRLIKRNVMNTPTWITLDLYDSVYIHKVGEAQPK 122
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
V +R F P ++R P+R GR+R EYRASLLA
Sbjct: 123 ASQVLQRWFSSPDLQRVPIREGRIRGALFLPPGEGPFPGLLDLFGGIGGLVEYRASLLAV 182
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAY+ ++DLPK+ + + L+YFEEA +L H +V+ L+
Sbjct: 183 RGFAVLALAYFAYDDLPKQLEEVDLEYFEEAANLLLAHPKVQKPGIGVISVSKGAEIGLA 242
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDI 919
MA +LK ++ATV ING+ P+ Y++ I P+ RM+V +G + I
Sbjct: 243 MACYLKQVAATVCINGANAIHEFPLRYRDLVITPIPSFPERMQVNAAGAVRI 294
>ref|XP_609128.3| PREDICTED: bile acid Coenzyme A: amino acid N-acyltransferase [Bos
taurus].
Length = 419
Score = 189 bits (480), Expect = 3e-48
Identities = 110/292 (37%), Positives = 164/292 (56%), Gaps = 4/292 (1%)
Frame = +2
Query: 56 VTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLAR 235
+T+ PA + DEPV I GL P Q VTL ++++D+KG L+R+ A Y A+ G+LDL R
Sbjct: 4 LTVTPASALA-DEPVHIQATGLPPLQMVTLIATMKDDKGNLYRSRAFYRANEAGELDLKR 62
Query: 236 APALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG---HEPEAERLL 403
PA+GG ++G+ PMGL W+L+PE+P R +KR+V TP + L+++D H+ +
Sbjct: 63 DPAVGGHYMGVHPMGLLWSLKPERPFDRLIKRNVMNTPTWITLDLYDSVYIHKVGEAQPK 122
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
V +R F P ++R P+R GR+R EYRASLLA
Sbjct: 123 ASQVLQRWFSSPDLQRVPIREGRIRGALFLPPGEGPFPGLLDLFGGIGGLVEYRASLLAV 182
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAY+ ++DLPK+ + + L+YFEEA +L H +V+ L+
Sbjct: 183 RGFAVLALAYFAYDDLPKQLEEVDLEYFEEAANLLLAHPKVQKPGIGVISVSKGAEIGLA 242
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDI 919
MA +LK ++ATV ING+ P+ Y++ I P+ RM+V +G + I
Sbjct: 243 MACYLKQVAATVCINGANAIHEFPLRYRDLVITPIPSFPERMQVNAAGAVRI 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,636,007
Number of extensions: 1029693
Number of successful extensions: 6172
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6048
Number of HSP's successfully gapped: 11
Length of query: 309
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,306,398
Effective search space: 2961424386
Effective search space used: 2961424386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547893.2| PREDICTED: similar to Peroxisomal acyl coenzyme... 417 e-117
Alignment gi|XP_547892.2| PREDICTED: similar to Peroxisomal acyl-coenzyme... 363 e-100
Alignment gi|XP_547894.2| PREDICTED: similar to Cytosolic acyl coenzyme A... 303 1e-82
Alignment gi|XP_538756.1| PREDICTED: similar to bile acid Coenzyme A: ami... 191 6e-49
Alignment gi|XP_853386.1| PREDICTED: similar to bile acid Coenzyme A: ami... 187 1e-47
Alignment gi|XP_538757.2| PREDICTED: similar to bile acid Coenzyme A: ami... 185 5e-47
>ref|XP_547893.2| PREDICTED: similar to Peroxisomal acyl coenzyme A thioester
hydrolase Ib (Peroxisomal long-chain acyl-coA
thioesterase Ib) (PTE-Ib) (PTE-2b) [Canis familiaris].
Length = 420
Score = 417 bits (1071), Expect = e-117
Identities = 214/293 (73%), Positives = 229/293 (78%)
Frame = +2
Query: 50 ATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDL 229
ATV+LEPAG C WDEPVRI+VRGLAPGQ VTLR+SLRDE+GALFRAHARY AD G LDL
Sbjct: 2 ATVSLEPAGRCAWDEPVRISVRGLAPGQPVTLRASLRDERGALFRAHARYRADDRGLLDL 61
Query: 230 ARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLLGR 409
ARAPALGGSFVGLEPMGL WALEPE P WRFVKRDVQTPFAVELEV DGHEP+A RLLGR
Sbjct: 62 ARAPALGGSFVGLEPMGLLWALEPETPFWRFVKRDVQTPFAVELEVLDGHEPDAGRLLGR 121
Query: 410 AVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHG 589
A+H R FL PGVRR PVRAGRVR T EYRASLLAGHG
Sbjct: 122 ALHARHFLRPGVRRVPVRAGRVRGTLFLPPGPGPFPGIIDIFGIGGGLVEYRASLLAGHG 181
Query: 590 FATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMA 769
FAT ALAYY+FEDLPK+ D++ LDYFEEALCYMLQH++VK CLSMA
Sbjct: 182 FATFALAYYNFEDLPKEIDSVDLDYFEEALCYMLQHSEVKGPGIGLLGISLGADICLSMA 241
Query: 770 SFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
SFLKNISATVSINGSGFS NK I YK+T IPPLG DLRR+KVAFSG+LDIVDI
Sbjct: 242 SFLKNISATVSINGSGFSGNKGIRYKQTFIPPLGHDLRRIKVAFSGILDIVDI 294
>ref|XP_547892.2| PREDICTED: similar to Peroxisomal acyl-coenzyme A thioester
hydrolase 2a (Peroxisomal long-chain acyl-coA
thioesterase 2) (ZAP128) (CTE-Ia) [Canis familiaris].
Length = 445
Score = 363 bits (932), Expect = e-100
Identities = 190/309 (61%), Positives = 218/309 (70%)
Frame = +2
Query: 2 GFMVRVPTRLCVPGMAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALF 181
GF+ R P +ATV+LEPAG C WDEPVRI+VRGLAPGQ VTLR+SLRDE+GALF
Sbjct: 18 GFLPRTPKLWAGARGSATVSLEPAGGCAWDEPVRISVRGLAPGQPVTLRASLRDERGALF 77
Query: 182 RAHARYCADANGQLDLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVEL 361
RAHARY AD G LDLARAPALGGSFVGLEPMGL WALEPEKPL R VKRDVQTPFAVEL
Sbjct: 78 RAHARYRADDRGLLDLARAPALGGSFVGLEPMGLLWALEPEKPLVRLVKRDVQTPFAVEL 137
Query: 362 EVFDGHEPEAERLLGRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXX 541
EV DGHEP+A RLLGRA+H R FL PGVRR PVRAGRVR T
Sbjct: 138 EVLDGHEPDAGRLLGRALHARHFLRPGVRRVPVRAGRVRGTLFLPPEPGPFPGIVDIYGV 197
Query: 542 XXXXXEYRASLLAGHGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXX 721
EYRASLLAG GFA +ALAY+++EDLPK + +HL+YFEEA+ Y+L H QVK
Sbjct: 198 GSGLLEYRASLLAGKGFAVMALAYHNYEDLPKGLEILHLEYFEEAVNYLLDHPQVKGLGV 257
Query: 722 XXXXXXXXXXXCLSMASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAF 901
CLSMASFLK I+A+V INGS + ++YK+ +PP+G D RM+V
Sbjct: 258 GLLGNSKGGELCLSMASFLKGITASVIINGSVANVGGTLHYKDEILPPVGLDANRMRVTK 317
Query: 902 SGLLDIVDI 928
GL DI+D+
Sbjct: 318 DGLADILDV 326
>ref|XP_547894.2| PREDICTED: similar to Cytosolic acyl coenzyme A thioester
hydrolase, inducible (Long chain acyl-CoA thioester
hydrolase) (Long chain acyl-CoA hydrolase) (CTE-I)
(CTE-Ib) [Canis familiaris].
Length = 426
Score = 303 bits (777), Expect = 1e-82
Identities = 160/228 (70%), Positives = 172/228 (75%), Gaps = 2/228 (0%)
Frame = +2
Query: 20 PTRLCVPGMAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARY 199
P R MAATV+LEPAG C WDEPVRI+VRGLAPGQ VTLR+SLRDE+GALFRAHARY
Sbjct: 99 PQRSAEIRMAATVSLEPAGRCAWDEPVRISVRGLAPGQPVTLRASLRDERGALFRAHARY 158
Query: 200 CADANGQLDLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGH 379
AD G LDLARAPALGGSFVGLEPMGL WALEPEKPL R VKRDVQTPFAVELEV DGH
Sbjct: 159 RADDRGLLDLARAPALGGSFVGLEPMGLLWALEPEKPLVRLVKRDVQTPFAVELEVLDGH 218
Query: 380 EPEAERLLGRAVHERDFLPPGVRREPVRAGRVRAT--XXXXXXXXXXXXXXXXXXXXXXX 553
EP+A RLLGRA+H R FL PGVRR PVRAGRVR T
Sbjct: 219 EPDAGRLLGRALHARHFLRPGVRRVPVRAGRVRGTLFLPPGERAGPFPGIIDLYGSGGGL 278
Query: 554 XEYRASLLAGHGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQH 697
EYRASLLAGHGFA LALAY+ FEDLP+ D + L+YFEEA+ +MLQH
Sbjct: 279 CEYRASLLAGHGFAALALAYFRFEDLPEYLDDLQLEYFEEAVNFMLQH 326
>ref|XP_538756.1| PREDICTED: similar to bile acid Coenzyme A: amino acid
N-acyltransferase isoform 1 [Canis familiaris].
Length = 419
Score = 191 bits (486), Expect = 6e-49
Identities = 114/290 (39%), Positives = 161/290 (55%), Gaps = 4/290 (1%)
Frame = +2
Query: 56 VTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLAR 235
+T PA + DEPV I V GL P Q VTL +SL+DEKG +F + A Y A+ G+LDL +
Sbjct: 4 LTATPASALA-DEPVHIRVTGLRPLQMVTLMASLKDEKGNVFWSRAFYKANEVGELDLMQ 62
Query: 236 APALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG---HEPEAERLL 403
PA GG +VG+ PMGLFW+L+P+K R +K+DV +PF + L ++D + ++++
Sbjct: 63 TPAFGGDYVGVHPMGLFWSLKPKKAFQRLLKKDVMNSPFWITLNLYDSVCFEDVITDQVM 122
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
V +R F PG++R +R GRVR E+RASLLA
Sbjct: 123 ASQVVQRWFSGPGLQRVQIREGRVRGALFLPPGEGPFPGVIDLFGGRGGLVEFRASLLAA 182
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAY+ +EDLP I L+YFEEA +L H +V+ L+
Sbjct: 183 RGFAVLALAYFAYEDLPSDLLEIDLEYFEEAANLLLAHPKVQTPGIGVISVSKGAEIGLA 242
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLL 913
MA FLK + AT+ ING+ P+ YK+T I P+ + RM++ SG +
Sbjct: 243 MACFLKQVVATIWINGTNAIFEFPLRYKDTVITPIPTFVERMQLDISGAM 292
>ref|XP_853386.1| PREDICTED: similar to bile acid Coenzyme A: amino acid
N-acyltransferase isoform 2 [Canis familiaris].
Length = 404
Score = 187 bits (475), Expect = 1e-47
Identities = 114/290 (39%), Positives = 161/290 (55%), Gaps = 4/290 (1%)
Frame = +2
Query: 56 VTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLAR 235
+T PA + DEPV I V GL P Q VTL +SL+DEKG +F + A Y A+ G+LDL +
Sbjct: 4 LTATPASALA-DEPVHIRVTGLRPLQMVTLMASLKDEKGNVFWSRAFYKANEVGELDLMQ 62
Query: 236 APALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG---HEPEAERLL 403
PA GG +VG+ PMGLFW+L+P+K R +K+DV +PF + L ++D + ++++
Sbjct: 63 TPAFGGDYVGVHPMGLFWSLKPKKAFQRLLKKDVMNSPFWITLNLYDSVCFEDVITDQVM 122
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
V +R F PG++R +R GRVR E+RASLLA
Sbjct: 123 ASQVVQRWFSGPGLQRVQIREGRVRGA---------------LFLPPGGLVEFRASLLAA 167
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAY+ +EDLP I L+YFEEA +L H +V+ L+
Sbjct: 168 RGFAVLALAYFAYEDLPSDLLEIDLEYFEEAANLLLAHPKVQTPGIGVISVSKGAEIGLA 227
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLL 913
MA FLK + AT+ ING+ P+ YK+T I P+ + RM++ SG +
Sbjct: 228 MACFLKQVVATIWINGTNAIFEFPLRYKDTVITPIPTFVERMQLDISGAM 277
>ref|XP_538757.2| PREDICTED: similar to bile acid Coenzyme A: amino acid
N-acyltransferase [Canis familiaris].
Length = 422
Score = 185 bits (470), Expect = 5e-47
Identities = 117/287 (40%), Positives = 157/287 (54%), Gaps = 8/287 (2%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M +T P S DEPV I GL P Q V L+++L+DE G LF +HA Y A+ G++
Sbjct: 1 MMIQLTATPT-SALIDEPVHIRATGLPPFQIVVLQATLKDETGNLFHSHAYYKANEVGEV 59
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG-----HEP 385
DL RAP+LGG +VG+ PMGLFW+L+PE L + +KRDV +PF V+++++D H P
Sbjct: 60 DLERAPSLGGDYVGVHPMGLFWSLKPENILTKLLKRDVMNSPFLVQIKLYDSNLPLIHIP 119
Query: 386 EAERLLGRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYR 565
+ + ER + PG +R VR G +R T E R
Sbjct: 120 TTAPKVSLTL-ERWYTAPGTKRIQVREGHIRGTLFLPPGEGRFPGVIDLFAGVGGLIESR 178
Query: 566 ASLLAGHGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXX 745
ASLLA HGFATLALAY D+EDLP + + L+YFEEA+ ++L+H +V
Sbjct: 179 ASLLASHGFATLALAYCDYEDLPSQPEKTDLEYFEEAVNFLLRHPKVLGPGVGIVSISKG 238
Query: 746 XXXCLSMASFLKNISATVSINGSGFSENKP-IYYKETSIP-PLGPDL 880
LSMA LK ++ATV ING F P +Y + S P P P L
Sbjct: 239 AEIGLSMAIHLKQVTATVLINGPNFVIRIPQVYRGQISQPLPFSPQL 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,146,044
Number of extensions: 1059129
Number of successful extensions: 6167
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6069
Number of HSP's successfully gapped: 6
Length of query: 309
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 207
Effective length of database: 15,474,232
Effective search space: 3203166024
Effective search space used: 3203166024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689544.3| acyl-coenzyme A thioesterase 4 [Homo sapiens]. 409 e-114
Alignment gi|NP_006812.3| acyl-coenzyme A thioesterase 2, mitochondrial [... 353 2e-97
Alignment gi|NP_001032238.1| acyl-coenzyme A thioesterase 1 [Homo sapiens]. 349 2e-96
Alignment gi|NP_001121082.1| bile acid-CoA:amino acid N-acyltransferase [... 178 5e-45
Alignment gi|NP_001692.1| bile acid-CoA:amino acid N-acyltransferase [Hom... 178 5e-45
Alignment gi|NP_001032239.1| putative acyl-coenzyme A thioesterase 6 [Hom... 60 2e-09
>ref|NP_689544.3| acyl-coenzyme A thioesterase 4 [Homo sapiens].
Length = 421
Score = 409 bits (1052), Expect = e-114
Identities = 209/295 (70%), Positives = 225/295 (76%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M+AT+ LEP G CCW+EPVRIAVRGLAP QRVTLR+SLRDEKGALFRAHARYCADA G+L
Sbjct: 1 MSATLILEPPGRCCWNEPVRIAVRGLAPEQRVTLRASLRDEKGALFRAHARYCADARGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGL WALEPEKP WRF+KRDVQ PF VELEV DGH+PE RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLLWALEPEKPFWRFLKRDVQIPFVVELEVLDGHDPEPGRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
+A HER FLPPGVRR+ VRAGRVRAT EYRASLLAG
Sbjct: 121 CQAQHERHFLPPGVRRQSVRAGRVRATLFLPPGPGPFPGIIDIFGIGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFATLALAYY+FEDLP D I L+YFEEA+CYMLQH QVK CLS
Sbjct: 181 HGFATLALAYYNFEDLPNNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLKN+SATVSINGSG S N I YK +SIPPLG DLRR+KVAFSGL+DIVDI
Sbjct: 241 MASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDI 295
>ref|NP_006812.3| acyl-coenzyme A thioesterase 2, mitochondrial [Homo sapiens].
Length = 483
Score = 353 bits (905), Expect = 2e-97
Identities = 185/309 (59%), Positives = 214/309 (69%)
Frame = +2
Query: 2 GFMVRVPTRLCVPGMAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALF 181
G ++RVP R MAAT+ LEPAG CCWDEPVRIAVRGLAP Q VTLR+SLRDEKGALF
Sbjct: 54 GQIIRVPAR-----MAATLILEPAGRCCWDEPVRIAVRGLAPEQPVTLRASLRDEKGALF 108
Query: 182 RAHARYCADANGQLDLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVEL 361
+AHARY AD G+LDL RAPALGGSF GLEPMGL WALEPEKPL R VKRDV+TP AVEL
Sbjct: 109 QAHARYRADTLGELDLERAPALGGSFAGLEPMGLLWALEPEKPLVRLVKRDVRTPLAVEL 168
Query: 362 EVFDGHEPEAERLLGRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXX 541
EV DGH+P+ RLL + HER FLPPGVRREPVR GRVR T
Sbjct: 169 EVLDGHDPDPGRLLCQTRHERYFLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGT 228
Query: 542 XXXXXEYRASLLAGHGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXX 721
EYRASLLAG GFA +ALAYY++EDLPK + +HL+YFEEA+ Y+L H +VK
Sbjct: 229 GGGLLEYRASLLAGKGFAVMALAYYNYEDLPKTMETLHLEYFEEAMNYLLSHPEVKGPGV 288
Query: 722 XXXXXXXXXXXCLSMASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAF 901
CLSMASFLK I+A V INGS + ++YK ++PP+G + R+KV
Sbjct: 289 GLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLHYKGETLPPVGVNRNRIKVTK 348
Query: 902 SGLLDIVDI 928
G DIVD+
Sbjct: 349 DGYADIVDV 357
>ref|NP_001032238.1| acyl-coenzyme A thioesterase 1 [Homo sapiens].
Length = 421
Score = 349 bits (896), Expect = 2e-96
Identities = 182/295 (61%), Positives = 207/295 (70%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MAAT+ LEPAG CCWDEPVRIAVRGLAP Q VTLR+SLRDEKGALF+AHARY AD G+L
Sbjct: 1 MAATLILEPAGRCCWDEPVRIAVRGLAPEQPVTLRASLRDEKGALFQAHARYRADTLGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DL RAPALGGSF GLEPMGL WALEPEKPL R VKRDV+TP AVELEV DGH+P+ RLL
Sbjct: 61 DLERAPALGGSFAGLEPMGLLWALEPEKPLVRLVKRDVRTPLAVELEVLDGHDPDPGRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
R HER FLPPGVRREPVRAGRVR T EYRASLLAG
Sbjct: 121 CRVRHERYFLPPGVRREPVRAGRVRGTLFLPPEPGPFPGIVDMFGTGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA +ALAYY++EDLPK + +HL+YFEEA+ Y+L H +VK CLS
Sbjct: 181 KGFAVMALAYYNYEDLPKTMETLHLEYFEEAVNYLLSHPEVKGPGVGLLGISKGGELCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK I+A V INGS + + YK ++PP+G + R+KV G DIVD+
Sbjct: 241 MASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDV 295
>ref|NP_001121082.1| bile acid-CoA:amino acid N-acyltransferase [Homo sapiens].
Length = 418
Score = 178 bits (452), Expect = 5e-45
Identities = 110/287 (38%), Positives = 154/287 (53%), Gaps = 10/287 (3%)
Frame = +2
Query: 89 DEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLARAPALGGSFVGL 268
DEPV I GL P Q V+ ++SL DE G +F + A Y A+ G++DL A +LGG ++G+
Sbjct: 14 DEPVHIRATGLIPFQMVSFQASLEDENGDMFYSQAHYRANEFGEVDLNHASSLGGDYMGV 73
Query: 269 EPMGLFWALEPEKPLWRFVKRDVQT-PFAVELEVFD---------GHEPEAERLLGRAVH 418
PMGLFW+L+PEK L R +KRDV PF V+++++D P+A L
Sbjct: 74 HPMGLFWSLKPEKLLTRLLKRDVMNRPFQVQVKLYDLELIVNNKVASAPKASLTL----- 128
Query: 419 ERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHGFAT 598
ER ++ PGV R VR GR+R E+RASLLA GFA+
Sbjct: 129 ERWYVAPGVTRIKVREGRLRGALFLPPGEGLFPGVIDLFGGLGGLLEFRASLLASRGFAS 188
Query: 599 LALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMASFL 778
LALAY+++EDLP+K + L+YFEEA ++L+H +V LSMA +L
Sbjct: 189 LALAYHNYEDLPRKPEVTDLEYFEEAANFLLRHPKVFGSGVGVVSVCQGVQIGLSMAIYL 248
Query: 779 KNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDI 919
K ++ATV ING+ F P Y PL + + GLL++
Sbjct: 249 KQVTATVLINGTNFPFGIPQVYHGQIHQPLPHSAQLISTNALGLLEL 295
>ref|NP_001692.1| bile acid-CoA:amino acid N-acyltransferase [Homo sapiens].
Length = 418
Score = 178 bits (452), Expect = 5e-45
Identities = 110/287 (38%), Positives = 154/287 (53%), Gaps = 10/287 (3%)
Frame = +2
Query: 89 DEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLARAPALGGSFVGL 268
DEPV I GL P Q V+ ++SL DE G +F + A Y A+ G++DL A +LGG ++G+
Sbjct: 14 DEPVHIRATGLIPFQMVSFQASLEDENGDMFYSQAHYRANEFGEVDLNHASSLGGDYMGV 73
Query: 269 EPMGLFWALEPEKPLWRFVKRDVQT-PFAVELEVFD---------GHEPEAERLLGRAVH 418
PMGLFW+L+PEK L R +KRDV PF V+++++D P+A L
Sbjct: 74 HPMGLFWSLKPEKLLTRLLKRDVMNRPFQVQVKLYDLELIVNNKVASAPKASLTL----- 128
Query: 419 ERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHGFAT 598
ER ++ PGV R VR GR+R E+RASLLA GFA+
Sbjct: 129 ERWYVAPGVTRIKVREGRLRGALFLPPGEGLFPGVIDLFGGLGGLLEFRASLLASRGFAS 188
Query: 599 LALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMASFL 778
LALAY+++EDLP+K + L+YFEEA ++L+H +V LSMA +L
Sbjct: 189 LALAYHNYEDLPRKPEVTDLEYFEEAANFLLRHPKVFGSGVGVVSVCQGVQIGLSMAIYL 248
Query: 779 KNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDI 919
K ++ATV ING+ F P Y PL + + GLL++
Sbjct: 249 KQVTATVLINGTNFPFGIPQVYHGQIHQPLPHSAQLISTNALGLLEL 295
>ref|NP_001032239.1| putative acyl-coenzyme A thioesterase 6 [Homo sapiens].
Length = 207
Score = 60.5 bits (145), Expect = 2e-09
Identities = 34/80 (42%), Positives = 44/80 (55%)
Frame = +2
Query: 686 MLQHTQVKXXXXXXXXXXXXXXXCLSMASFLKNISATVSINGSGFSENKPIYYKETSIPP 865
MLQH +VK CLSMASFLK I+ATV IN + P++YK+ IP
Sbjct: 1 MLQHPKVKGPSIALLGFSKGGDLCLSMASFLKGITATVLINACVANTVAPLHYKDMIIPK 60
Query: 866 LGPDLRRMKVAFSGLLDIVD 925
L DL ++K+ SG L +D
Sbjct: 61 LVDDLGKVKITKSGFLTFMD 80
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,313,941
Number of extensions: 1028106
Number of successful extensions: 5720
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5618
Number of HSP's successfully gapped: 6
Length of query: 309
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,934,836
Effective search space: 3091511052
Effective search space used: 3091511052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_599008.3| acyl-coenzyme A thioesterase 4 [Mus musculus]. 381 e-106
Alignment gi|NP_663419.3| acyl-coenzyme A thioesterase 5 [Mus musculus]. 347 7e-96
Alignment gi|NP_766168.1| acyl-coenzyme A thioesterase 6 [Mus musculus]. 329 2e-90
Alignment gi|NP_599007.1| acyl-coenzyme A thioesterase 3 [Mus musculus]. 329 2e-90
Alignment gi|NP_598949.3| acyl-coenzyme A thioesterase 2, mitochondrial p... 328 4e-90
Alignment gi|NP_036136.1| acyl-coenzyme A thioesterase 1 [Mus musculus]. 326 2e-89
Alignment gi|NP_001158037.1| acyl-coenzyme A amino acid N-acyltransferase... 187 1e-47
Alignment gi|NP_663343.2| acyl-coenzyme A amino acid N-acyltransferase 2 ... 183 1e-46
Alignment gi|NP_031545.2| bile acid-CoA:amino acid N-acyltransferase [Mus... 180 2e-45
>ref|NP_599008.3| acyl-coenzyme A thioesterase 4 [Mus musculus].
Length = 421
Score = 381 bits (979), Expect = e-106
Identities = 193/295 (65%), Positives = 218/295 (73%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MAAT+++EP G CWDEP+ IAVRGLAP Q VTLRS LRDEKGALFRAHARY AD++G+L
Sbjct: 1 MAATLSVEPTGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLAR PALGGSF GLEPMGL WA+EP++P WR +KRDVQTPF VELEV DGHEP+ R L
Sbjct: 61 DLARVPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFLVELEVLDGHEPDGGRRL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
R VHER F+ PGVRR PVR GRVRAT EYRA L+AG
Sbjct: 121 ARTVHERHFMAPGVRRVPVREGRVRATLFLPPGQGPFPGIIDVYGVGGGLLEYRAGLVAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFATLALA+YDFEDLPK+ + I +DYFEEA+ YML+H +VK CL
Sbjct: 181 HGFATLALAFYDFEDLPKELNVIEVDYFEEAVRYMLRHPKVKGPDIGLLGLSLGADVCLI 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFL N+SATVSINGS FS N+ I YK+T IPPLG DLRRMKVAFSG+LDIVDI
Sbjct: 241 MASFLNNVSATVSINGSAFSGNRHIKYKQTMIPPLGHDLRRMKVAFSGILDIVDI 295
>ref|NP_663419.3| acyl-coenzyme A thioesterase 5 [Mus musculus].
Length = 421
Score = 347 bits (890), Expect = 7e-96
Identities = 177/295 (60%), Positives = 204/295 (69%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M TV+LEP G CWDEP+ IAVRGLAP Q VTLR++LRDEKGALFRAHARY AD++G+L
Sbjct: 1 MVPTVSLEPTGHSCWDEPLSIAVRGLAPEQPVTLRTALRDEKGALFRAHARYRADSHGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLAR PALGGSF GLEPMGL WA+EP++P WR +KRDVQTPF VELEV DGHEP+ RLL
Sbjct: 61 DLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFVVELEVLDGHEPDGGRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
RAVHER F+ PGVRR PVR GRVRAT EYRASLLAG
Sbjct: 121 ARAVHERHFMAPGVRRVPVREGRVRATLFLPPGTGPFPGIIDLFGVGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA +ALAYY ++DLPK D +HL+YFEEA+ Y+L H QVK LS
Sbjct: 181 KGFAVMALAYYKYDDLPKVIDILHLEYFEEAVTYLLSHPQVKGPGVGLLGISKGAELSLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK I+A V ING+ + +YYKE S+P LG L R+KV G DI+DI
Sbjct: 241 MASFLKGITAAVVINGATVNVISTLYYKEESLPGLGMHLERIKVTKDGFKDIIDI 295
>ref|NP_766168.1| acyl-coenzyme A thioesterase 6 [Mus musculus].
Length = 419
Score = 329 bits (844), Expect = 2e-90
Identities = 173/296 (58%), Positives = 203/296 (68%), Gaps = 1/296 (0%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MAAT+++EPAG CWDEP+ IAVRGLAP Q VTLRS LRDEKG LFRAHARY AD++G+L
Sbjct: 1 MAATLSVEPAGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGMLFRAHARYRADSHGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLAR PALGGSF GLEPMGL WA+EP++P WR +KRDVQ PF VELEV DGHEP+ + L
Sbjct: 61 DLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQIPFVVELEVLDGHEPDGGQRL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
RAVHER F+ PGVRR PVR GRVRAT E+RASLLAG
Sbjct: 121 ARAVHERHFMAPGVRRVPVREGRVRATLFLPPGKGQFPGIIDLYGSIGGLCEHRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFA LALAY+ FEDLP+ + L+YFEEAL ML+H QVK CLS
Sbjct: 181 HGFAVLALAYFQFEDLPENLSDVRLEYFEEALALMLRHPQVKGPNIGLIGVSKGADLCLS 240
Query: 764 MASFLK-NISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MA+FLK NI+ATV IN + P+YYK+ +P LG D + K SGL+D+ D+
Sbjct: 241 MAAFLKDNITATVLINACVANTLVPLYYKDLFVPELGCDQTKNK---SGLMDLRDM 293
>ref|NP_599007.1| acyl-coenzyme A thioesterase 3 [Mus musculus].
Length = 432
Score = 329 bits (843), Expect = 2e-90
Identities = 172/295 (58%), Positives = 201/295 (68%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MA TV LEPAG C D+PV IAVRGLAP Q VTLRS LRDEKGALFRAHARY AD++G+L
Sbjct: 12 MAPTVILEPAGGCLCDQPVHIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGEL 71
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLAR PALGGSF GLEPMGL WA+EP++P WR +KRDVQTPF VELEV DGHEP+ + L
Sbjct: 72 DLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFVVELEVLDGHEPDGGQRL 131
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
RAVHER F+ PGVRR PVR GRVRAT EYRASLLAG
Sbjct: 132 ARAVHERHFMAPGVRRVPVREGRVRATLFLPPGTGPFPGIIDLFGIGSGLLEYRASLLAG 191
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA +ALAY ++EDLPK D IHL+YFEEA+ Y+L H QV +
Sbjct: 192 KGFAVMALAYNNYEDLPKDMDIIHLEYFEEAVTYLLSHPQVTGSGVGVLGISKGGELGFA 251
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLKNI+A V INGS + + YK+ ++P +G + +R+K GL DIVD+
Sbjct: 252 MASFLKNITAAVIINGSISNIGGNLQYKDETVPSVGINTKRVKRTKDGLKDIVDL 306
>ref|NP_598949.3| acyl-coenzyme A thioesterase 2, mitochondrial precursor [Mus
musculus].
Length = 453
Score = 328 bits (841), Expect = 4e-90
Identities = 168/292 (57%), Positives = 203/292 (69%)
Frame = +2
Query: 50 ATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDL 229
AT+++EP G CWDEP+ IAVRGLAP Q VTLRS+LRDEKGALFRAHARY ADA G+L+L
Sbjct: 44 ATLSVEPEGRSCWDEPLSIAVRGLAPEQPVTLRSALRDEKGALFRAHARYRADAGGELNL 103
Query: 230 ARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLLGR 409
ARAPALGGSF GLEPMGL WA+EPE+PLWR +KRDVQTPF VELEV DGHEP+ + L +
Sbjct: 104 ARAPALGGSFSGLEPMGLLWAMEPERPLWRLIKRDVQTPFLVELEVLDGHEPDGGQRLAQ 163
Query: 410 AVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHG 589
AVHER FL PGVRR PVR GRVRAT EYRASLLAG G
Sbjct: 164 AVHERHFLAPGVRRVPVREGRVRATLFLPPEPGPFPGIIDLFGVGGGLLEYRASLLAGKG 223
Query: 590 FATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMA 769
FA +ALAYY+++DLPK + +H++YFEEA+ Y+ H +VK L+MA
Sbjct: 224 FAVMALAYYNYDDLPKSIETMHMEYFEEAVNYLRSHPEVKGPGIGLLGISKGGELGLAMA 283
Query: 770 SFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVD 925
SFLK I+A V INGS + I YK+ +IPP+ ++K+ GLLD+V+
Sbjct: 284 SFLKGITAAVVINGSVAAVGNTISYKDETIPPVSLLRNQVKMTKDGLLDVVE 335
>ref|NP_036136.1| acyl-coenzyme A thioesterase 1 [Mus musculus].
Length = 419
Score = 326 bits (835), Expect = 2e-89
Identities = 168/294 (57%), Positives = 200/294 (68%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
M AT+ LEP+G CWDEP+ IAVRGLAP Q VTLRS LRDEKGALFRAHARY AD++G+L
Sbjct: 1 MEATLNLEPSGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGEL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLAR PALGGSF GLEPMGL WA+EP++P WR VKRDVQTPF VELEV DGHEP+ + L
Sbjct: 61 DLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLVKRDVQTPFVVELEVLDGHEPDGGQRL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
AVHER FL PGVRR PVR GRVRAT EYRASLLAG
Sbjct: 121 AHAVHERHFLAPGVRRVPVREGRVRATLFLPPEPGPFPGIIDLFGVGGGLLEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA +ALAYY+++DLPK + +H++YFEEA+ Y+ H +VK L+
Sbjct: 181 KGFAVMALAYYNYDDLPKNMETMHMEYFEEAVNYLRSHPEVKGPGIGLLGISKGGELGLA 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVD 925
MASFLK I+A V INGS + I YK+ +IPP+ ++K+ GL D+VD
Sbjct: 241 MASFLKGITAAVVINGSVAAVGNTISYKDETIPPVTILRNQVKMTKDGLKDVVD 294
>ref|NP_001158037.1| acyl-coenzyme A amino acid N-acyltransferase 1 [Mus musculus].
Length = 416
Score = 187 bits (475), Expect = 1e-47
Identities = 104/277 (37%), Positives = 161/277 (58%), Gaps = 4/277 (1%)
Frame = +2
Query: 89 DEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLARAPALGGSFVGL 268
DEPV I GL P Q VT++++++DE +F++ A Y + G++DL + PALGG +VG+
Sbjct: 15 DEPVSIRATGLPPSQIVTIKATVKDENDNVFQSQAFYKTNEAGEVDLEKTPALGGDYVGV 74
Query: 269 EPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG-HEPEAERLLGRAVH--ERDFLP 436
PMGLF++L+P+K R +K+DV +PF + L+++D + E R+ +A +R F+
Sbjct: 75 HPMGLFFSLKPKKAFHRLMKKDVMNSPFCICLDLYDSVNWLETVRIPSKASQRVQRWFVG 134
Query: 437 PGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHGFATLALAYY 616
PGV+RE ++ GRVR E+RASLLA HGFA LALAY+
Sbjct: 135 PGVKREQIQEGRVRGALFLPPGKGPFPGIIDLFGVIGGLVEFRASLLASHGFAVLALAYF 194
Query: 617 DFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMASFLKNISAT 796
++DLP+K + L+YFEEA ++L H +++ L+MA +LK + AT
Sbjct: 195 AYKDLPEKLQEVDLEYFEEAANFLLSHPKIQQPGIGVISTSKGAEIGLAMACYLKQVIAT 254
Query: 797 VSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSG 907
V ING+ + P+ Y++ + P+ L RM+V SG
Sbjct: 255 VCINGATTTTAVPLRYQDLVVTPIQQALERMEVHVSG 291
>ref|NP_663343.2| acyl-coenzyme A amino acid N-acyltransferase 2 [Mus musculus].
Length = 420
Score = 183 bits (465), Expect = 1e-46
Identities = 105/279 (37%), Positives = 160/279 (57%), Gaps = 4/279 (1%)
Frame = +2
Query: 89 DEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLARAPALGGSFVGL 268
DEPV I GL P Q VT++++++DE +F++ A Y + G++DL + PALGG +VG+
Sbjct: 15 DEPVSIRATGLPPSQIVTIKATVKDENDNVFQSQAFYKTNEAGEVDLEKTPALGGDYVGV 74
Query: 269 EPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG-HEPEAERLLGRAVH--ERDFLP 436
PMGLF++L+P+K R +K+DV +P + L+++D + E R+ +A +R F+
Sbjct: 75 HPMGLFFSLKPKKAFHRLMKKDVMNSPLCICLDLYDSVNWLETVRIPSKASQRVQRWFVG 134
Query: 437 PGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHGFATLALAYY 616
PGV+RE ++ GRVR E+RASLLA HGFA LALAY+
Sbjct: 135 PGVKREQIQEGRVRGALFLPPGKGPFPGIIDLFGLIGGLVEFRASLLASHGFAVLALAYF 194
Query: 617 DFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMASFLKNISAT 796
+EDLP+K + L+YFEEA ++L H +++ L+MA +LK + AT
Sbjct: 195 AYEDLPEKPQEVDLEYFEEAANFLLSHPKIQQPGIGVISTSKGAEIGLAMACYLKQVIAT 254
Query: 797 VSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLL 913
V ING P+ Y++ + P+ P L R++V SG L
Sbjct: 255 VCINGPTTITIFPLRYQDLVMTPIHPALERIQVHDSGAL 293
>ref|NP_031545.2| bile acid-CoA:amino acid N-acyltransferase [Mus musculus].
Length = 420
Score = 180 bits (456), Expect = 2e-45
Identities = 105/265 (39%), Positives = 146/265 (55%), Gaps = 5/265 (1%)
Frame = +2
Query: 89 DEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLARAPALGGSFVGL 268
DEPV I V GLAP Q V L++SL+DEKG LF + A Y A G++DL P+LGG ++G+
Sbjct: 14 DEPVHIQVTGLAPFQVVCLQASLKDEKGNLFSSQAFYRASEVGEVDLEHDPSLGGDYMGV 73
Query: 269 EPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDGHEPEAERL----LGRAVHERDFL 433
PMGLFW+L+PEK L R +KRDV +P+ + ++ + P + + L ER ++
Sbjct: 74 HPMGLFWSLKPEKLLGRLIKRDVMNSPYQIHIKACHPYFPLQDIVVSPPLDSLTLERWYV 133
Query: 434 PPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAGHGFATLALAY 613
PGV+R V+ R+R E+RASLLA GFATLALAY
Sbjct: 134 APGVKRIQVKESRIRGALFLPPGEGPFPGVIDLFGGAGGLMEFRASLLASRGFATLALAY 193
Query: 614 YDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLSMASFLKNISA 793
++++DLP + + + L+YFEE + ++L+H +V LSMA LK I A
Sbjct: 194 WNYDDLPSRLEKVDLEYFEEGVEFLLRHPKVLGPGVGILSVCIGAEIGLSMAINLKQIRA 253
Query: 794 TVSINGSGFSENKPIYYKETSIPPL 868
TV ING F P Y PP+
Sbjct: 254 TVLINGPNFVSQSPHVYHGQVYPPV 278
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,611,576
Number of extensions: 854428
Number of successful extensions: 4747
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4612
Number of HSP's successfully gapped: 9
Length of query: 309
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 208
Effective length of database: 12,583,923
Effective search space: 2617455984
Effective search space used: 2617455984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929075.1| PREDICTED: acyl-coenzyme A thioesterase 4 [S... 466 e-132
Alignment gi|XP_001929053.1| PREDICTED: acyl-coenzyme A thioesterase 6-li... 377 e-105
Alignment gi|XP_003122092.1| PREDICTED: acyl-coenzyme A amino acid N-acyl... 198 3e-51
>ref|XP_001929075.1| PREDICTED: acyl-coenzyme A thioesterase 4 [Sus scrofa].
Length = 418
Score = 466 bits (1200), Expect = e-132
Identities = 241/297 (81%), Positives = 246/297 (82%), Gaps = 2/297 (0%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MAATV LEPAG C WDEPVRIAVRGLAPGQRVTLR+SLRDEKGALFRAHARYCADA+GQL
Sbjct: 1 MAATVVLEPAGRCRWDEPVRIAVRGLAPGQRVTLRASLRDEKGALFRAHARYCADADGQL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPE--AER 397
DLARAPALGGSFVGLEPMGL WALEPEKP WRFVKRDVQTPFAV+LEVFDGHEPE AE+
Sbjct: 61 DLARAPALGGSFVGLEPMGLLWALEPEKPFWRFVKRDVQTPFAVKLEVFDGHEPEPQAEQ 120
Query: 398 LLGRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLL 577
LLG AVHERDFLPPGVRREPVRAGRVRAT EYRASLL
Sbjct: 121 LLGVAVHERDFLPPGVRREPVRAGRVRATLFLPPGLGPFPGIIDIFGMGGGLLEYRASLL 180
Query: 578 AGHGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXC 757
AGHGFATLALAY DFEDLPKKFD IHLDYFEEALCYMLQHTQVK C
Sbjct: 181 AGHGFATLALAYCDFEDLPKKFDTIHLDYFEEALCYMLQHTQVKGPGIGLLGISLGADIC 240
Query: 758 LSMASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
LSMASFLKNISATVSINGSGF+ NKPIYYKETSIPPLG DLRRMKVAFSGLLDIVDI
Sbjct: 241 LSMASFLKNISATVSINGSGFNGNKPIYYKETSIPPLGHDLRRMKVAFSGLLDIVDI 297
>ref|XP_001929053.1| PREDICTED: acyl-coenzyme A thioesterase 6-like [Sus scrofa].
Length = 421
Score = 377 bits (969), Expect = e-105
Identities = 199/295 (67%), Positives = 218/295 (73%)
Frame = +2
Query: 44 MAATVTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQL 223
MAATVTLEPAG CCWDEPVRIAVRGLAP Q VTLR+SLRDEKGALFRAHARYCADA+GQL
Sbjct: 1 MAATVTLEPAGRCCWDEPVRIAVRGLAPEQPVTLRASLRDEKGALFRAHARYCADADGQL 60
Query: 224 DLARAPALGGSFVGLEPMGLFWALEPEKPLWRFVKRDVQTPFAVELEVFDGHEPEAERLL 403
DLARAPALGGSFVGLEPMGLFWALEPEKPL R VKRDVQTPFAVELEVFDGHEPE RLL
Sbjct: 61 DLARAPALGGSFVGLEPMGLFWALEPEKPLLRLVKRDVQTPFAVELEVFDGHEPEGGRLL 120
Query: 404 GRAVHERDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
GRAVHERDFL PGVRREPVRAGRVRAT EYRASLLAG
Sbjct: 121 GRAVHERDFLAPGVRREPVRAGRVRATLFLPSDTGPFPGIIDLFGSGGGLCEYRASLLAG 180
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
GFA LALAY+ FEDLP+ + + LDYFEEA+ +MLQH++VK CLS
Sbjct: 181 RGFAVLALAYFRFEDLPEYLNDVSLDYFEEAVDFMLQHSKVKGPSVGLLGFSKGGDLCLS 240
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSGLLDIVDI 928
MASFLK I+ATV IN + P+ YK+ IP L D + + SG L+++DI
Sbjct: 241 MASFLKGITATVVINACVANTIAPLRYKDMIIPHLSSDPWKYTINESGFLNLMDI 295
>ref|XP_003122092.1| PREDICTED: acyl-coenzyme A amino acid N-acyltransferase 2-like [Sus
scrofa].
Length = 419
Score = 198 bits (504), Expect = 3e-51
Identities = 120/288 (41%), Positives = 165/288 (57%), Gaps = 4/288 (1%)
Frame = +2
Query: 56 VTLEPAGSCCWDEPVRIAVRGLAPGQRVTLRSSLRDEKGALFRAHARYCADANGQLDLAR 235
+T PA + DEPV I V GLAP Q VTL +SL+DEKG LF++ A Y A+ G+LDL +
Sbjct: 4 LTATPASALA-DEPVHIRVMGLAPLQVVTLMASLKDEKGNLFQSRAFYRANEAGELDLEQ 62
Query: 236 APALGGSFVGLEPMGLFWALEPEKPLWRFVKRDV-QTPFAVELEVFDG-HEPEAERLLGR 409
PALGG FVG+ PMGLFW+L+PEKP R +K +V +PF++ L+++D + ++ + R
Sbjct: 63 DPALGGDFVGVHPMGLFWSLKPEKPFGRLLKLEVMNSPFSITLDLYDSVYLQKSGVVQPR 122
Query: 410 AVHE--RDFLPPGVRREPVRAGRVRATXXXXXXXXXXXXXXXXXXXXXXXXEYRASLLAG 583
A E R F PGV+R +R GRVR EYRA LLA
Sbjct: 123 ASLEVQRWFSSPGVQRLMIREGRVRGALFLPPGEGPFPGIIDLFGGIGGLLEYRAGLLAA 182
Query: 584 HGFATLALAYYDFEDLPKKFDAIHLDYFEEALCYMLQHTQVKXXXXXXXXXXXXXXXCLS 763
HGFA LALAY+ ++DLP + + LDYFEEA +L H +++ L+
Sbjct: 183 HGFAALALAYFAYDDLPNQLQEVDLDYFEEAANLLLAHPKIQKPGIGVISVSKGAEIGLA 242
Query: 764 MASFLKNISATVSINGSGFSENKPIYYKETSIPPLGPDLRRMKVAFSG 907
MA +LK + ATV INGS + P+ Y++ + P+ RM+V SG
Sbjct: 243 MACYLKQVVATVCINGSNAAFEFPLRYRDLVLTPIPSFPERMEVNASG 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,041,819
Number of extensions: 665919
Number of successful extensions: 3845
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 3
Length of query: 309
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 210
Effective length of database: 8,879,129
Effective search space: 1864617090
Effective search space used: 1864617090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002487
(928 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 690 0.0
gb|GL893568.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 533 e-149
>Sscrofa_Chr07
|| Length = 134764511
Score = 690 bits (348), Expect = 0.0
Identities = 432/460 (93%)
Strand = Plus / Minus
Query: 42 ggatggctgcgacggtgaccctggagcccgcgggcagttgctgctgggacgagccggtgc 101
||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 102748484 ggatggcggcgaccgtgacgctggagcccgcgggtcgttgctgctgggacgagccggtgc 102748425
Query: 102 gcatcgctgtgcgcggcctggctccggggcagcgggtcacgttgcgctcttccctgcgcg 161
|||||||||||||||||||||| || | ||||| ||||||| ||||| | || |||||||
Sbjct: 102748424 gcatcgctgtgcgcggcctggccccagagcagccggtcacgctgcgcgcgtctctgcgcg 102748365
Query: 162 acgagaagggcgcgcttttcagggcccacgcgcgctactgcgccgacgccaacggccagc 221
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 102748364 acgagaagggcgcgctcttcagggcccacgcgcgctactgcgccgacgccgacggccagc 102748305
Query: 222 tggacctggcgcgcgcgcccgcgctgggcggcagcttcgtggggctcgagcccatggggc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102748304 tggacctggcgcgcgcgcccgcgctgggcggcagcttcgtggggctcgagcccatggggc 102748245
Query: 282 tcttctgggctctggagcccgaaaagcctttatggcggtttgtgaagcgggacgtgcaga 341
|||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||
Sbjct: 102748244 tcttctgggctctggagcccgagaagcctttgctacggctggtgaagcgggacgtgcaga 102748185
Query: 342 cgcccttcgccgtggagctggaggtgttcgacggccacgagcccgaggcagagcgactcc 401
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 102748184 cgcccttcgccgtggagctggaggtgttcgacggccacgagcccgagggcgggcggctcc 102748125
Query: 402 tgggccgggctgtgcacgagcgcgacttcctgccgcccggggttcggcgcgagccggtgc 461
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 102748124 tgggccgggctgtgcacgagcgcgacttcctggcgcccggggttcggcgcgagccggtgc 102748065
Query: 462 gcgcgggccgggtgcgcgccacgcttttcctgcctccagg 501
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 102748064 gcgcgggccgggtgcgcgccacgcttttcctgccttcagg 102748025
Score = 644 bits (325), Expect = 0.0
Identities = 399/424 (94%), Gaps = 6/424 (1%)
Strand = Plus / Minus
Query: 84 gctgggacgagccggtgcgcatcgctgtgcgcggcctggctccggggcagcgggtcacgt 143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102791135 gctgggacgagccggtgcgcatcgctgtgcgcggcctggctccggggcagcgggtcacgc 102791076
Query: 144 tgcgctcttccctgcgcgacgagaagggcgcgcttttcagggcccacgcgcgctactgcg 203
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 102791075 tgcgcgcgtccctgcgcgacgagaagggcgcgctcttcagggcccacgcgcgctactgcg 102791016
Query: 204 ccgacgccaacggccagctggacctggcgcgcgcgcccgcgctgggcggcagcttcgtgg 263
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 102791015 ccgacgccgacggccagctggacctggcgcgcgcacccgcgctgggcggcagcttcgtgg 102790956
Query: 264 ggctcgagcccatggggctcttctgggctctggagcccgaaaagcctttatggcggtttg 323
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 102790955 ggcttgagcccatggggctcctctgggctctggagcccgaaaagcctttttggcggtttg 102790896
Query: 324 tgaagcgggacgtgcagacgcccttcgccgtggagctggaggtgttcgacggccacgagc 383
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 102790895 tgaagcgggacgtgcagacgcccttcgccgtgaagctggaggtgttcgacggccacgagc 102790836
Query: 384 ccg------aggcagagcgactcctgggccgggctgtgcacgagcgcgacttcctgccgc 437
||| |||| |||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct: 102790835 ccgagcctcaggcggagcagctcctgggcgtggcagtgcacgagcgcgacttcctgccgc 102790776
Query: 438 ccggggttcggcgcgagccggtgcgcgcgggccgggtgcgcgccacgcttttcctgcctc 497
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 102790775 ccggggttcggcgggagccggtgcgcgcgggccgggtgcgcgccacgctcttcctacctc 102790716
Query: 498 cagg 501
||||
Sbjct: 102790715 cagg 102790712
Score = 404 bits (204), Expect = e-110
Identities = 222/228 (97%)
Strand = Plus / Minus
Query: 701 caggtaaagggcccaggcattgggcttctgggaatttctttaggggctgatatttgtctc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102788381 caggtaaagggcccaggcattgggcttctgggaatttctttaggggctgatatttgtctc 102788322
Query: 761 tccatggcctcatttttgaagaatatctcagccacagtttccatcaatggatctggattc 820
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 102788321 tccatggcctcatttttgaagaacatctcagccacagtttccatcaatggatctggattc 102788262
Query: 821 agtgagaacaaacccatatactacaaggagactagcatcccaccattgggccctgacctg 880
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 102788261 aatggaaacaaacccatatactacaaggagactagcatcccaccattgggccacgacctg 102788202
Query: 881 aggagaatgaaggtagctttctcaggcctcctggacattgtggatata 928
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102788201 aggagaatgaaggtagctttctcaggcctcctggacattgtggatata 102788154
Score = 341 bits (172), Expect = 4e-91
Identities = 193/200 (96%)
Strand = Plus / Minus
Query: 506 ggacctttcccagggatcattgacatctttggtatgggaggaggcctgttggaatatcgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102789363 ggacctttcccagggatcattgacatctttggtatgggaggaggcctgttggaatatcgg 102789304
Query: 566 gccagccttctagctggccatggctttgctaccttggcactagcttattatgactttgaa 625
||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct: 102789303 gccagtcttctagctggccatggctttgctaccttggcgctagcttactgcgactttgaa 102789244
Query: 626 gatctccccaagaaatttgacgccatacatctggactactttgaagaagccctgtgctac 685
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 102789243 gatctccccaagaaattcgacaccatacatctggactactttgaagaagccctgtgctac 102789184
Query: 686 atgcttcaacacacccaggt 705
||||||||||||||||||||
Sbjct: 102789183 atgcttcaacacacccaggt 102789164
>gb|GL893568.1| Sus scrofa unplaced genomic scaffold chrU_scaffold232
Length = 295
Score = 533 bits (269), Expect = e-149
Identities = 284/289 (98%)
Strand = Plus / Minus
Query: 213 acggccagctggacctggcgcgcgcgcccgcgctgggcggcagcttcgtggggctcgagc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acggccagctggacctggcgcgcgcgcccgcgctgggcggcagcttcgtggggctcgagc 236
Query: 273 ccatggggctcttctgggctctggagcccgaaaagcctttatggcggtttgtgaagcggg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ccatggggctcttctgggctctggagcccgaaaagcctttatggcggtttgtgaagcggg 176
Query: 333 acgtgcagacgcccttcgccgtggagctggaggtgttcgacggccacgagcccgaggcag 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 175 acgtgcagacgcccttcgccgtggagctggaggtgttcgacggccacgagcccgagggcg 116
Query: 393 agcgactcctgggccgggctgtgcacgagcgcgacttcctgccgcccggggttcggcgcg 452
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 115 ggcggctcctgggccgggctgtgcacgagcgcgacttcctggcgcccggggttcggcgcg 56
Query: 453 agccggtgcgcgcgggccgggtgcgcgccacgcttttcctgcctccagg 501
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 agccggtgcgcgcgggccgggtgcgcgccacgcttttcctgcctccagg 7
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,933,115
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 6
Length of query: 928
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 907
Effective length of database: 2,808,413,156
Effective search space: 2547230732492
Effective search space used: 2547230732492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)