Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092452.1| coiled-coil domain-containing protein 80 [Bo... 760 0.0
Alignment gi|NP_001014926.1| sushi repeat-containing protein SRPX2 precur... 67 1e-10
Alignment gi|NP_001035579.1| sushi-repeat containing protein, X-linked [B... 53 2e-06
>ref|NP_001092452.1| coiled-coil domain-containing protein 80 [Bos taurus].
Length = 954
Score = 760 bits (1963), Expect = 0.0
Identities = 399/532 (75%), Positives = 413/532 (77%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
M WRMGPSFTMLLALWLVCGSEPH Q NR S GG+K PLVS NRRPARLLRHTGRSQG
Sbjct: 1 MTWRMGPSFTMLLALWLVCGSEPHGQTMNRGSRGGQKVPLVSAVNRRPARLLRHTGRSQG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
I+RTTL +PNLQ LQRRRSIPVLRVAHATA PASLGI GAPVRT+Q P A+SSPR+MVRD
Sbjct: 61 IERTTLEKPNLQPLQRRRSIPVLRVAHATAPPASLGIHGAPVRTQQSPGARSSPREMVRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSS RS+MLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSARSKMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQ GEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKF MVLLKK
Sbjct: 181 ERHIQQIVLFHQAGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFGMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA 1646
TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVV+EGNNGGEA
Sbjct: 241 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVEEGNNGGEA 300
Query: 1647 GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1826
GRPGL SEKRKEEQRRAQ+PPTRESR+KV+RK
Sbjct: 301 GRPGLGSEKRKEEQRRAQVPPTRESRVKVMRKPATTVGAPPPPPPTPRATTLPPAPVTTV 360
Query: 1827 XXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAHPSDHPHRSPATAEVTTARGSVASENLYX 2006
PR H S PHR PATAEVTTA+G VASENLY
Sbjct: 361 TRATSRVVTAAARPTTTTAFPTTQRPWTPRVHLSSAPHRPPATAEVTTAKGPVASENLYP 420
Query: 2007 XXXXXXXXXXXXTTRRPSKATSFESFTTAPPTTISEPSTRPGAGRFRDNRTDKREHGHRD 2186
TTRRPSKATSFE FT AP ISEPSTR GAGRFRDNRTD+REHG RD
Sbjct: 421 PPRKEQPRERPLTTRRPSKATSFEVFTAAPSIAISEPSTRAGAGRFRDNRTDRREHGPRD 480
Query: 2187 PNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 2342
PNVV QDKILSNEYEDKYDLSRPT SQLEEELQ GN+
Sbjct: 481 PNVVPSSHKPAKGKPPKKKAQDKILSNEYEDKYDLSRPTTSQLEEELQRGNM 532
Score = 56.2 bits (134), Expect = 1e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 771 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQA-CNFGLRHITVLKLLGVGEEV 829
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 830 GGVLELFPINGSSVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 889
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 890 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 937
Score = 52.8 bits (125), Expect = 2e-06
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Frame = +3
Query: 1164 NILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGK 1343
++L F GK R+ +I+AP A Y + +C++A R + I +F K
Sbjct: 618 DLLGPFEGKRRLLLITAPKAENSMYVQQRDEYLES-FCKMATRKVSVITIFGPVSNSTMK 676
Query: 1344 VRRITSEG----RVL--EQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVR 1505
+ + RV+ E +D LI +L + F MVL L+V++ Y P+
Sbjct: 677 IDHFQLDNEKPMRVVDDEDLVDQHLISELRKEYGMTYNDFFMVLTDVDLRVKQYYEVPIA 736
Query: 1506 LEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
+++++++ID Q I+ +EK ++ G + K
Sbjct: 737 MKSVFDLIDTFQSRIKDMEKQKKDGIICK 765
>ref|NP_001014926.1| sushi repeat-containing protein SRPX2 precursor [Bos taurus].
Length = 465
Score = 66.6 bits (161), Expect = 1e-10
Identities = 45/140 (32%), Positives = 71/140 (50%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ +ISAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 329 NSAAGLLDQFYEKRRLLIISAPDPSNRYYKMQISMLQQST-CGLDLRHVTIIELVGQPPQ 387
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R E L ++I +L F L + F+MVL+ K ERY PV E
Sbjct: 388 EVGRIR---------EHQLSANIIEELRQFQHLTRSYFNMVLIDKQGIDRERYMEPVTPE 438
Query: 1512 AMYEIIDQGPIRRIEKIRQK 1571
++ ID + E I+++
Sbjct: 439 EIFTFIDDYLLSNEELIQRR 458
>ref|NP_001035579.1| sushi-repeat containing protein, X-linked [Bos taurus].
Length = 459
Score = 52.8 bits (125), Expect = 2e-06
Identities = 41/141 (29%), Positives = 67/141 (47%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L + K R++++S P A YRL + +L+ C L RHI + L
Sbjct: 327 LLDQYYEKRRLFIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 379
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FS+V+L K +ERY V A++ +
Sbjct: 380 ---TLIGRIGAKVMPPALALQLRLLLRIPLYSFSIVVLDKHGVDKERYVSLVTPVALFNL 436
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 437 IDTFPLRKEEMVLQAEMGQTC 457
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 90,771,805
Number of extensions: 2616319
Number of successful extensions: 10341
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10300
Number of HSP's successfully gapped: 6
Length of query: 886
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 775
Effective length of database: 14,008,606
Effective search space: 10856669650
Effective search space used: 10856669650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535742.2| PREDICTED: similar to steroid-sensitive protein... 390 e-108
Alignment gi|XP_549134.1| PREDICTED: similar to sushi-repeat-containing p... 68 5e-11
Alignment gi|XP_548948.2| PREDICTED: similar to Sushi repeat-containing p... 52 2e-06
>ref|XP_535742.2| PREDICTED: similar to steroid-sensitive protein 1 [Canis familiaris].
Length = 788
Score = 390 bits (1003), Expect = e-108
Identities = 198/271 (73%), Positives = 221/271 (81%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
M W SF ML+A+WLVCGSEPHL A R SHG R APLVSP RRPARLLRH GRS+G
Sbjct: 1 MTWTTALSFAMLVAVWLVCGSEPHLPAAKRGSHGARGAPLVSPAPRRPARLLRHAGRSRG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
I R L EP+L RRR +PV R A A PA ISGAP R +QRP A SPR M+RD
Sbjct: 61 IGRGALEEPSLPPPLRRRGVPVPRAA-PPAPPAPPRISGAPARPKQRPGAPRSPRDMIRD 119
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EG+S RSR LR+P+GS SPN+LASFAGK+RVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 120 EGTSARSRPLRWPAGSGSPNVLASFAGKSRVWVISAPHASEGYYRLMMSLLKDDVYCELA 179
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFH+ G+EGGKVRRI S+GRV EQ L+P L+PKLMSFL+LE GKF MVLL+K
Sbjct: 180 ERHIQQIVLFHRAGDEGGKVRRIGSDGRVREQRLEPGLVPKLMSFLQLEHGKFGMVLLRK 239
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEK 1559
TLQVEERYPYPVRLEA+YE+IDQGP+RR E+
Sbjct: 240 TLQVEERYPYPVRLEALYELIDQGPVRRRER 270
Score = 58.2 bits (139), Expect = 4e-08
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Frame = +3
Query: 1149 GSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEG 1328
G S ++L SF GK R+ +I+AP A Y + +C++A R I I +F
Sbjct: 447 GKSVTHLLGSFEGKRRLLLITAPKAENNMYVQQRDEYLES-FCKMATRKISVITIFGPFN 505
Query: 1329 EEGGKVRRITSEG----RVL--EQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERY 1490
K+ + RV+ E +D LI +L + F MVL L+V++ Y
Sbjct: 506 NSTMKIDHFQLDNEKPMRVVDDEDLVDQHLIGELRKEYGMTYNDFFMVLTDVDLRVKQYY 565
Query: 1491 PYPVRLEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
P+ +++++++ID Q I+ +EK +++G V K
Sbjct: 566 EVPISMKSVFDLIDTFQSRIKDMEKQKKEGIVCK 599
Score = 57.8 bits (138), Expect = 5e-08
Identities = 32/69 (46%), Positives = 37/69 (53%)
Frame = +3
Query: 2133 AGRFRDNRTDKREHGHRDPNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQ 2312
A R RDNRTD+REHG R P QD+ SNEYE KYD RP ASQ
Sbjct: 292 AARARDNRTDRREHGPRGPEGGPAHPKPAKGKAAPKKGQDRTGSNEYESKYDPGRPGASQ 351
Query: 2313 LEEELQVGN 2339
+ EL+ G+
Sbjct: 352 RDPELRGGD 360
Score = 56.2 bits (134), Expect = 2e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 605 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQA-CNFGLRHITILKLLGVGEEV 663
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 664 GGVLELFPINGSSVVEREDIPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 723
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 724 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 771
>ref|XP_549134.1| PREDICTED: similar to sushi-repeat-containing protein, X-linked 2
[Canis familiaris].
Length = 465
Score = 67.8 bits (164), Expect = 5e-11
Identities = 46/140 (32%), Positives = 72/140 (51%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ +ISAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 329 NSAAGLLDQFYEKQRLLIISAPDPSNRYYKMQISMLQQST-CGLDLRHMTIIELVGQPPQ 387
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R EQ L ++I +L F +L F+MVL+ K ERY PV E
Sbjct: 388 EVGRIR---------EQQLSANIIEELRQFQRLTPSYFNMVLIDKQGIDRERYMEPVTPE 438
Query: 1512 AMYEIIDQGPIRRIEKIRQK 1571
++ ID + E I+++
Sbjct: 439 EIFTFIDDYLLSNQELIQRR 458
>ref|XP_548948.2| PREDICTED: similar to Sushi repeat-containing protein SRPX precursor
[Canis familiaris].
Length = 462
Score = 52.4 bits (124), Expect = 2e-06
Identities = 42/141 (29%), Positives = 65/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YRL + +L+ C L RHI + L
Sbjct: 330 LLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 382
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FS VL+ K +ERY V A++ +
Sbjct: 383 ---TLIGRIGAKIMPPALALQLRLLLRIPLYSFSTVLVDKHGMDKERYVSLVMPVALFNL 439
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 440 IDTFPLRKEEMVLQAEMGQTC 460
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 93,551,257
Number of extensions: 2474849
Number of successful extensions: 10566
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10534
Number of HSP's successfully gapped: 6
Length of query: 886
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 774
Effective length of database: 15,140,872
Effective search space: 11719034928
Effective search space used: 11719034928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955806.1| coiled-coil domain-containing protein 80 precur... 696 0.0
Alignment gi|NP_955805.1| coiled-coil domain-containing protein 80 precur... 696 0.0
Alignment gi|NP_055282.1| sushi repeat-containing protein SRPX2 precursor... 67 6e-11
Alignment gi|NP_001164222.1| sushi repeat-containing protein SRPX isoform... 55 3e-07
Alignment gi|NP_001164221.1| sushi repeat-containing protein SRPX isoform... 55 3e-07
Alignment gi|NP_006298.1| sushi repeat-containing protein SRPX isoform 1 ... 55 3e-07
>ref|NP_955806.1| coiled-coil domain-containing protein 80 precursor [Homo sapiens].
Length = 950
Score = 696 bits (1795), Expect = 0.0
Identities = 373/534 (69%), Positives = 396/534 (74%), Gaps = 2/534 (0%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
M WRMGP FTMLLA+WLVCGSEPH A R SHGGRK PLVSP + RPAR LRHTGRS+G
Sbjct: 1 MTWRMGPRFTMLLAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
I+R+TL EPNLQ LQRRRS+PVLR+A T PA I+GA VR EQRPAA+ SPR+M+RD
Sbjct: 61 IERSTLEEPNLQPLQRRRSVPVLRLARPTEPPARSDINGAAVRPEQRPAARGSPREMIRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSS RSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSARSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQ GEEGGKVRRITSEG++LEQPLDPSLIPKLMSFLKLEKGKF MVLLKK
Sbjct: 181 ERHIQQIVLFHQAGEEGGKVRRITSEGQILEQPLDPSLIPKLMSFLKLEKGKFGMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNN-GGE 1643
TLQVEERYPYPVRLEAMYE+IDQGPIRRIEKIRQKGFVQKCKASGVEGQVV EGN+ GG
Sbjct: 241 TLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGG 300
Query: 1644 AGRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKXXXXXXXXXXXXXXXXXXXXXXXXXXX 1823
AGRP L SEK+KE+ RRAQ+PPTRESR+KVLRK
Sbjct: 301 AGRPSLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATT 360
Query: 1824 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAHPSDHPHRSPATAEVTTARGSVASENLY 2003
P PS P P T EV TAR SENLY
Sbjct: 361 VTRSTSRAVTVAARPMTTTAFPTTQRPWTP--SPSHRP---PTTTEVITARRPSVSENLY 415
Query: 2004 XXXXXXXXXXXXXTTRRPSKATSFESFTTAPPTTISEPSTR-PGAGRFRDNRTDKREHGH 2180
TTRRPSKATS ESFT APPTTISEPSTR G GRFRDNR D+REHGH
Sbjct: 416 PPSRKDQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHGH 475
Query: 2181 RDPNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 2342
RDPNVV QDKILSNEYE+KYDLSRPTASQLE+ELQVGN+
Sbjct: 476 RDPNVVPGPPKPAKEKPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNV 529
Score = 56.6 bits (135), Expect = 1e-07
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S ++L SF GK R+ +I+AP A Y + +C++A R I I +F
Sbjct: 611 SVADLLGSFEGKRRLLLITAPKAENNMYVQQRDEYLES-FCKMATRKISVITIFGPVNNS 669
Query: 1335 GGKVRRITSEG----RVL--EQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPY 1496
K+ + RV+ E +D LI +L + F MVL L+V++ Y
Sbjct: 670 TMKIDHFQLDNEKPMRVVDDEDLVDQRLISELRKEYGMTYNDFFMVLTDVDLRVKQYYEV 729
Query: 1497 PVRLEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
P+ +++++++ID Q I+ +EK +++G V K
Sbjct: 730 PITMKSVFDLIDTFQSRIKDMEKQKKEGIVCK 761
Score = 55.8 bits (133), Expect = 2e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 767 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQA-CNFGLRHITILKLLGVGEEV 825
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 826 GGVLELFPINGSSVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 885
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 886 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 933
>ref|NP_955805.1| coiled-coil domain-containing protein 80 precursor [Homo sapiens].
Length = 950
Score = 696 bits (1795), Expect = 0.0
Identities = 373/534 (69%), Positives = 396/534 (74%), Gaps = 2/534 (0%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
M WRMGP FTMLLA+WLVCGSEPH A R SHGGRK PLVSP + RPAR LRHTGRS+G
Sbjct: 1 MTWRMGPRFTMLLAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
I+R+TL EPNLQ LQRRRS+PVLR+A T PA I+GA VR EQRPAA+ SPR+M+RD
Sbjct: 61 IERSTLEEPNLQPLQRRRSVPVLRLARPTEPPARSDINGAAVRPEQRPAARGSPREMIRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSS RSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSARSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQ GEEGGKVRRITSEG++LEQPLDPSLIPKLMSFLKLEKGKF MVLLKK
Sbjct: 181 ERHIQQIVLFHQAGEEGGKVRRITSEGQILEQPLDPSLIPKLMSFLKLEKGKFGMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNN-GGE 1643
TLQVEERYPYPVRLEAMYE+IDQGPIRRIEKIRQKGFVQKCKASGVEGQVV EGN+ GG
Sbjct: 241 TLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGG 300
Query: 1644 AGRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKXXXXXXXXXXXXXXXXXXXXXXXXXXX 1823
AGRP L SEK+KE+ RRAQ+PPTRESR+KVLRK
Sbjct: 301 AGRPSLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATT 360
Query: 1824 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAHPSDHPHRSPATAEVTTARGSVASENLY 2003
P PS P P T EV TAR SENLY
Sbjct: 361 VTRSTSRAVTVAARPMTTTAFPTTQRPWTP--SPSHRP---PTTTEVITARRPSVSENLY 415
Query: 2004 XXXXXXXXXXXXXTTRRPSKATSFESFTTAPPTTISEPSTR-PGAGRFRDNRTDKREHGH 2180
TTRRPSKATS ESFT APPTTISEPSTR G GRFRDNR D+REHGH
Sbjct: 416 PPSRKDQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHGH 475
Query: 2181 RDPNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 2342
RDPNVV QDKILSNEYE+KYDLSRPTASQLE+ELQVGN+
Sbjct: 476 RDPNVVPGPPKPAKEKPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNV 529
Score = 56.6 bits (135), Expect = 1e-07
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S ++L SF GK R+ +I+AP A Y + +C++A R I I +F
Sbjct: 611 SVADLLGSFEGKRRLLLITAPKAENNMYVQQRDEYLES-FCKMATRKISVITIFGPVNNS 669
Query: 1335 GGKVRRITSEG----RVL--EQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPY 1496
K+ + RV+ E +D LI +L + F MVL L+V++ Y
Sbjct: 670 TMKIDHFQLDNEKPMRVVDDEDLVDQRLISELRKEYGMTYNDFFMVLTDVDLRVKQYYEV 729
Query: 1497 PVRLEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
P+ +++++++ID Q I+ +EK +++G V K
Sbjct: 730 PITMKSVFDLIDTFQSRIKDMEKQKKEGIVCK 761
Score = 55.8 bits (133), Expect = 2e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 767 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQA-CNFGLRHITILKLLGVGEEV 825
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 826 GGVLELFPINGSSVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 885
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 886 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 933
>ref|NP_055282.1| sushi repeat-containing protein SRPX2 precursor [Homo sapiens].
Length = 465
Score = 67.4 bits (163), Expect = 6e-11
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ +ISAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 329 NSAAGLLDQFYEKQRLLIISAPDPSNRYYKMQISMLQQST-CGLDLRHVTIIELVGQPPQ 387
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R EQ L ++I +L F +L + F+MVL+ K +RY PV E
Sbjct: 388 EVGRIR---------EQQLSANIIEELRQFQRLTRSYFNMVLIDKQGIDRDRYMEPVTPE 438
Query: 1512 AMYEIID 1532
++ ID
Sbjct: 439 EIFTFID 445
>ref|NP_001164222.1| sushi repeat-containing protein SRPX isoform 3 [Homo sapiens].
Length = 405
Score = 55.1 bits (131), Expect = 3e-07
Identities = 43/141 (30%), Positives = 66/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YRL + +L+ C L RHI + L
Sbjct: 273 LLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 325
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FSMVL+ K +ERY V A++ +
Sbjct: 326 ---TLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVDKHGMDKERYVSLVMPVALFNL 382
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 383 IDTFPLRKEEMVLQAEMSQTC 403
>ref|NP_001164221.1| sushi repeat-containing protein SRPX isoform 2 [Homo sapiens].
Length = 444
Score = 55.1 bits (131), Expect = 3e-07
Identities = 43/141 (30%), Positives = 66/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YRL + +L+ C L RHI + L
Sbjct: 312 LLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 364
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FSMVL+ K +ERY V A++ +
Sbjct: 365 ---TLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVDKHGMDKERYVSLVMPVALFNL 421
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 422 IDTFPLRKEEMVLQAEMSQTC 442
>ref|NP_006298.1| sushi repeat-containing protein SRPX isoform 1 [Homo sapiens].
Length = 464
Score = 55.1 bits (131), Expect = 3e-07
Identities = 43/141 (30%), Positives = 66/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YRL + +L+ C L RHI + L
Sbjct: 332 LLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 384
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FSMVL+ K +ERY V A++ +
Sbjct: 385 ---TLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVDKHGMDKERYVSLVMPVALFNL 441
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 442 IDTFPLRKEEMVLQAEMSQTC 462
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 91,711,180
Number of extensions: 2417277
Number of successful extensions: 10345
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10304
Number of HSP's successfully gapped: 12
Length of query: 886
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 775
Effective length of database: 14,638,160
Effective search space: 11344574000
Effective search space used: 11344574000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080715.2| coiled-coil domain-containing protein 80 precur... 622 e-178
Alignment gi|NP_001077364.1| sushi repeat-containing protein SRPX2 precur... 68 4e-11
Alignment gi|NP_081114.1| sushi repeat-containing protein SRPX2 precursor... 68 4e-11
Alignment gi|NP_058607.1| sushi-repeat-containing protein SRPX precursor ... 54 5e-07
>ref|NP_080715.2| coiled-coil domain-containing protein 80 precursor [Mus musculus].
Length = 949
Score = 622 bits (1605), Expect = e-178
Identities = 336/534 (62%), Positives = 372/534 (69%), Gaps = 2/534 (0%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
M+W+MGP FT LLA+WLVCGS H A + SH GRK PLVSP + R AR LRHTGRS G
Sbjct: 1 MMWKMGPHFTTLLAMWLVCGSASHSPALDSDSHTGRKVPLVSPISSRSARYLRHTGRSGG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
++++T EPN Q QRR+S+PVLR+AH T P GI+G PVR E RP A+SS R+MVRD
Sbjct: 61 VEKSTQEEPNPQPFQRRKSVPVLRLAHPTMRPPPSGINGVPVRPEVRPIARSSAREMVRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSS R+RMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSARTRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQ GEEGGKVRRIT+EG++LEQPLDP+LIPKLMSFLKLEKGKFSMVLLKK
Sbjct: 181 ERHIQQIVLFHQAGEEGGKVRRITNEGQILEQPLDPNLIPKLMSFLKLEKGKFSMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGE- 1643
TLQVEERYPYPVRLEAMYE+IDQGPIRRIEKIRQKGFVQKCKASG+EG VVQEGN GG
Sbjct: 241 TLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQKCKASGIEGHVVQEGNEGGGG 300
Query: 1644 AGRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKXXXXXXXXXXXXXXXXXXXXXXXXXXX 1823
AG GL +KRKE+ RR Q+ PTRE+ RK
Sbjct: 301 AGGTGLGGDKRKEDPRRTQVHPTREAP----RKQATSKAATPQPPPTPRATTLPPAPVTT 356
Query: 1824 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAHPSDHPHRSPATAEVTTARGSVASENLY 2003
R HP HR PATAEVTTARG SE LY
Sbjct: 357 ATRATSRVVTIAARPTTTTAYPATQRPWTSRLHPFSVSHRPPATAEVTTARGPSVSEQLY 416
Query: 2004 XXXXXXXXXXXXXTTRRPSKATSFESFTTAPPTTISEPSTR-PGAGRFRDNRTDKREHGH 2180
TRRPSKAT++ SFT PP T+ E S R G RFRDNRTDKREHGH
Sbjct: 417 PLPRKEQQREKPQATRRPSKATNYGSFTATPPPTLWEVSARVVGTSRFRDNRTDKREHGH 476
Query: 2181 RDPNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 2342
+DPN V +D+ILSNEYEDKYDLS+PT+SQ EEE QV ++
Sbjct: 477 QDPNAV--PGPHKPVKGKLPKKKDRILSNEYEDKYDLSQPTSSQGEEERQVDSV 528
Score = 55.8 bits (133), Expect = 2e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 766 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALNGQA-CNFGLRHITILKLLGVGEEV 824
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 825 GGVLELFPINGSSIVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 884
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 885 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 932
Score = 54.3 bits (129), Expect = 5e-07
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Frame = +3
Query: 1101 RDEGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCE 1280
+D+ ++ L S ++L SF GK R+ +I+ P A Y + +C+
Sbjct: 592 QDDNQKPTAKHLAPSPKKSVADLLGSFEGKRRLLLITTPKAENNMYVQQRDEYLES-FCK 650
Query: 1281 LAERHIQQIVLFHQEGEEGGKVRRITSEG----RVLEQP--LDPSLIPKLMSFLKLEKGK 1442
+A R I + +F K+ + RV++ +D LI +L +
Sbjct: 651 MATRRISVVTIFGPVNNSSMKIDHFQLDNEKPMRVVDDDDLVDQHLISELRKEYGMTYDD 710
Query: 1443 FSMVLLKKTLQVEERYPYPVRLEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
F MVL L+V++ Y P+ +++++++ID Q I+ +EK +++G K
Sbjct: 711 FFMVLTDVDLRVKQYYEVPIAMKSVFDLIDTFQSRIKDMEKQKKEGIACK 760
>ref|NP_001077364.1| sushi repeat-containing protein SRPX2 precursor [Mus musculus].
Length = 467
Score = 67.8 bits (164), Expect = 4e-11
Identities = 43/127 (33%), Positives = 66/127 (51%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ ++SAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 331 NSAAGLLDQFYEKQRLLIVSAPDPSNRYYKMQISMLQQST-CGLDLRHVTIIELVGQPPQ 389
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R EQ L +I +L F +L + F+MVL+ K ERY PV E
Sbjct: 390 EVGRIR---------EQQLSAGIIEELRQFQRLTRSYFNMVLIDKQGIDRERYMEPVTPE 440
Query: 1512 AMYEIID 1532
++ ID
Sbjct: 441 EIFTFID 447
>ref|NP_081114.1| sushi repeat-containing protein SRPX2 precursor [Mus musculus].
Length = 467
Score = 67.8 bits (164), Expect = 4e-11
Identities = 43/127 (33%), Positives = 66/127 (51%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ ++SAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 331 NSAAGLLDQFYEKQRLLIVSAPDPSNRYYKMQISMLQQST-CGLDLRHVTIIELVGQPPQ 389
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R EQ L +I +L F +L + F+MVL+ K ERY PV E
Sbjct: 390 EVGRIR---------EQQLSAGIIEELRQFQRLTRSYFNMVLIDKQGIDRERYMEPVTPE 440
Query: 1512 AMYEIID 1532
++ ID
Sbjct: 441 EIFTFID 447
>ref|NP_058607.1| sushi-repeat-containing protein SRPX precursor [Mus musculus].
Length = 464
Score = 54.3 bits (129), Expect = 5e-07
Identities = 42/141 (29%), Positives = 66/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YRL + +L+ C L RH+ + L
Sbjct: 332 LLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ-AQCGLDLRHVTVVELVGVFP------ 384
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FSMV++ K +ERY V A++ +
Sbjct: 385 ---TLIGRIRAKIMPPALALQLRLLLRIPLYSFSMVVVDKHGMDKERYVSLVTPMALFNL 441
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E I Q Q C
Sbjct: 442 IDTFPLRKEEMILQAEMGQTC 462
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 77,426,783
Number of extensions: 2027107
Number of successful extensions: 8413
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8382
Number of HSP's successfully gapped: 7
Length of query: 886
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 776
Effective length of database: 12,313,599
Effective search space: 9555352824
Effective search space used: 9555352824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132728.1| PREDICTED: coiled-coil domain-containing pro... 857 0.0
Alignment gi|XP_003361128.1| PREDICTED: coiled-coil domain-containing pro... 658 0.0
Alignment gi|XP_001924554.2| PREDICTED: sushi repeat-containing protein S... 67 4e-11
Alignment gi|XP_001927140.1| PREDICTED: sushi repeat-containing protein S... 54 6e-07
>ref|XP_003132728.1| PREDICTED: coiled-coil domain-containing protein 80 [Sus scrofa].
Length = 954
Score = 857 bits (2214), Expect = 0.0
Identities = 446/532 (83%), Positives = 447/532 (84%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG
Sbjct: 1 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD
Sbjct: 61 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK
Sbjct: 181 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA 1646
TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA
Sbjct: 241 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA 300
Query: 1647 GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1826
GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRK
Sbjct: 301 GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRKPATPTGAPPPPPPTPRATTLPPAPVTTV 360
Query: 1827 XXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAHPSDHPHRSPATAEVTTARGSVASENLYX 2006
PRAHPSDHPHRSPATAEVTTARGSVASENLY
Sbjct: 361 TRATSRVVTIAARPTTTTAFPTTQRPWTPRAHPSDHPHRSPATAEVTTARGSVASENLYP 420
Query: 2007 XXXXXXXXXXXXTTRRPSKATSFESFTTAPPTTISEPSTRPGAGRFRDNRTDKREHGHRD 2186
TTR+PSKATSFESFT APPTTISEPSTRPGAGRFRDNRTDKREHGHRD
Sbjct: 421 PPRKEQPKEKPQTTRKPSKATSFESFTAAPPTTISEPSTRPGAGRFRDNRTDKREHGHRD 480
Query: 2187 PNVVXXXXXXXXXXXXXXXTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 2342
PNVV TQDKILSNEYEDKYDLSRPTASQLEEELQVGNL
Sbjct: 481 PNVVPGPHKPAKGKPPKKKTQDKILSNEYEDKYDLSRPTASQLEEELQVGNL 532
Score = 60.1 bits (144), Expect = 6e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 2538 QDGQLKPTKHFTQSPRKPVTDLLGPFD 2618
QDGQLKPTKHFTQSPRKPVTDLLGPF+
Sbjct: 598 QDGQLKPTKHFTQSPRKPVTDLLGPFE 624
Score = 55.8 bits (133), Expect = 1e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Frame = +3
Query: 1155 SSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEE 1334
S N L+ F + R+ VISAP+ + Y +S L C RHI + L E
Sbjct: 771 SLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQA-CNFGLRHITILKLLGVGEEV 829
Query: 1335 GGKVRRITSEGR--VLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPV-R 1505
GG + G V + + L+ + ++ ++ FSM+L+ K V+ YP P+
Sbjct: 830 GGVLELFPINGSSVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWS 889
Query: 1506 LEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEAG 1649
+ +Y++ID +RR E Q+ +C G + G + G
Sbjct: 890 MVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDG 937
Score = 54.3 bits (129), Expect = 3e-07
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Frame = +3
Query: 1164 NILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGK 1343
++L F GK R+ +I+AP A Y + +C++A R I I +F K
Sbjct: 618 DLLGPFEGKRRLLLITAPKAENNMYVQQRDEYLES-FCKMATRKISVITIFGPVNNSTMK 676
Query: 1344 VRRITSEG----RVL--EQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVR 1505
+ + RV+ E +D LI +L + F MVL L+V++ Y P+
Sbjct: 677 IDHFQLDNEKPMRVVDDEDLVDQHLISELRKEYGMTYNDFFMVLTDVDLRVKQYYEVPIA 736
Query: 1506 LEAMYEIID--QGPIRRIEKIRQKGFVQK 1586
+++++++ID Q I+ +EK +++G V K
Sbjct: 737 MKSVFDLIDTFQSRIKDMEKQKKEGIVCK 765
>ref|XP_003361128.1| PREDICTED: coiled-coil domain-containing protein 80-like, partial
[Sus scrofa].
Length = 660
Score = 658 bits (1697), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Frame = +3
Query: 747 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 926
MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG
Sbjct: 1 MIWRMGPSFTMLLALWLVCGSEPHLQARNRVSHGGRKAPLVSPTNRRPARLLRHTGRSQG 60
Query: 927 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 1106
IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD
Sbjct: 61 IDRTTLGEPNLQSLQRRRSIPVLRVAHATALPASLGISGAPVRTEQRPAAQSSPRQMVRD 120
Query: 1107 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 1286
EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA
Sbjct: 121 EGSSGRSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELA 180
Query: 1287 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 1466
ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK
Sbjct: 181 ERHIQQIVLFHQEGEEGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKK 240
Query: 1467 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA 1646
TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA
Sbjct: 241 TLQVEERYPYPVRLEAMYEIIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVQEGNNGGEA 300
Query: 1647 GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRK 1742
GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRK
Sbjct: 301 GRPGLSSEKRKEEQRRAQMPPTRESRLKVLRK 332
Score = 203 bits (516), Expect = 4e-52
Identities = 111/144 (77%), Positives = 112/144 (77%)
Frame = +3
Query: 1911 PRAHPSDHPHRSPATAEVTTARGSVASENLYXXXXXXXXXXXXXTTRRPSKATSFESFTT 2090
PRAHPSDHPHRSPATAEVTTARGSVASENLY TTR+PSKATSFE
Sbjct: 378 PRAHPSDHPHRSPATAEVTTARGSVASENLYPPPRKEQPKEKPQTTRKPSKATSFEXXXX 437
Query: 2091 APPTTISEPSTRPGAGRFRDNRTDKREHGHRDPNVVXXXXXXXXXXXXXXXTQDKILSNE 2270
ISEPSTRPGAGRFRDNRTDKREHGHRDPNV TQDKILSNE
Sbjct: 438 XXXXXISEPSTRPGAGRFRDNRTDKREHGHRDPNVXXXXXXXAKGKPPKKKTQDKILSNE 497
Query: 2271 YEDKYDLSRPTASQLEEELQVGNL 2342
YEDKYDLSRPTASQLEEELQVGNL
Sbjct: 498 YEDKYDLSRPTASQLEEELQVGNL 521
Score = 60.1 bits (144), Expect = 6e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 2538 QDGQLKPTKHFTQSPRKPVTDLLGPFD 2618
QDGQLKPTKHFTQSPRKPVTDLLGPF+
Sbjct: 587 QDGQLKPTKHFTQSPRKPVTDLLGPFE 613
>ref|XP_001924554.2| PREDICTED: sushi repeat-containing protein SRPX2 [Sus scrofa].
Length = 451
Score = 67.4 bits (163), Expect = 4e-11
Identities = 44/127 (34%), Positives = 66/127 (51%)
Frame = +3
Query: 1152 SSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGE 1331
+S+ +L F K R+ +ISAP S YY++ +S+L+ C L RH+ I L Q +
Sbjct: 315 NSAAGLLDQFYEKRRLLIISAPDPSNRYYKMQISMLQQST-CGLDLRHVTIIELVGQPPQ 373
Query: 1332 EGGKVRRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLE 1511
E G++R EQ L ++I +L F L + F+MVL+ K ERY PV E
Sbjct: 374 EVGRIR---------EQQLSANIIEELRQFQHLTRSYFNMVLIDKQGIDRERYMEPVTPE 424
Query: 1512 AMYEIID 1532
++ ID
Sbjct: 425 EIFTFID 431
>ref|XP_001927140.1| PREDICTED: sushi repeat-containing protein SRPX [Sus scrofa].
Length = 461
Score = 53.5 bits (127), Expect = 6e-07
Identities = 42/141 (29%), Positives = 66/141 (46%)
Frame = +3
Query: 1167 ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQEGEEGGKV 1346
+L F K R+ ++S P A YR+ + +L+ C L RHI + L
Sbjct: 329 LLDQFYEKRRLLILSTPTARNLLYRMQLGMLQQ-AQCGLDLRHITVVELVGVFP------ 381
Query: 1347 RRITSEGRVLEQPLDPSLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEI 1526
T GR+ + + P+L +L L++ FSMVL+ K +ERY V A++ +
Sbjct: 382 ---TLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVDKHGMDKERYVSLVTPVALFNL 438
Query: 1527 IDQGPIRRIEKIRQKGFVQKC 1589
ID P+R+ E + Q Q C
Sbjct: 439 IDTFPLRKEEMVLQAEMGQTC 459
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 60,578,442
Number of extensions: 2015628
Number of successful extensions: 6517
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6490
Number of HSP's successfully gapped: 10
Length of query: 886
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 778
Effective length of database: 8,655,056
Effective search space: 6733633568
Effective search space used: 6733633568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002491
(2658 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893575.2| Sus scrofa unplaced genomic scaffold ChrUScaf1460 2002 0.0
Sscrofa_Chr13 2002 0.0
>gb|GL893575.2| Sus scrofa unplaced genomic scaffold ChrUScaf1460
Length = 95691
Score = 2002 bits (1010), Expect = 0.0
Identities = 1010/1010 (100%)
Strand = Plus / Plus
Query: 736 tggattgcacaatgatatggagaatgggacccagttttaccatgctgttggcattgtggc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92886 tggattgcacaatgatatggagaatgggacccagttttaccatgctgttggcattgtggc 92945
Query: 796 tggtgtgcggatcagagccccacttgcaggccaggaatagagtgagccatggagggcgga 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92946 tggtgtgcggatcagagccccacttgcaggccaggaatagagtgagccatggagggcgga 93005
Query: 856 aagcgcctctggtttcccccaccaacagaaggccagctcggttactgaggcacacaggga 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93006 aagcgcctctggtttcccccaccaacagaaggccagctcggttactgaggcacacaggga 93065
Query: 916 ggtctcagggaattgacagaaccactctgggagaaccaaaccttcagtctctccaaagaa 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93066 ggtctcagggaattgacagaaccactctgggagaaccaaaccttcagtctctccaaagaa 93125
Query: 976 ggaggagcataccggtgttgagagtggctcacgcaacggcactgccagcctcgctgggca 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93126 ggaggagcataccggtgttgagagtggctcacgcaacggcactgccagcctcgctgggca 93185
Query: 1036 tcagtggggccccggtgagaactgagcagagaccagcagcccagagctctccccgtcaga 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93186 tcagtggggccccggtgagaactgagcagagaccagcagcccagagctctccccgtcaga 93245
Query: 1096 tggtccgagatgaggggtcctcgggtcggtcaagaatgttgcgcttcccgtctgggtcca 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93246 tggtccgagatgaggggtcctcgggtcggtcaagaatgttgcgcttcccgtctgggtcca 93305
Query: 1156 gctctcccaacatccttgccagctttgcagggaagaacagggtgtgggtcatctcggccc 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93306 gctctcccaacatccttgccagctttgcagggaagaacagggtgtgggtcatctcggccc 93365
Query: 1216 ctcacgcctcggaaggctactaccgcctcatgatgagcctcctgaaggacgacgtgtatt 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93366 ctcacgcctcggaaggctactaccgcctcatgatgagcctcctgaaggacgacgtgtatt 93425
Query: 1276 gtgagctggcggagaggcacatccagcagatcgtgctgttccaccaggaaggagaagaag 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93426 gtgagctggcggagaggcacatccagcagatcgtgctgttccaccaggaaggagaagaag 93485
Query: 1336 gcggcaaagtgcggaggatcaccagcgaaggccgggtcctagagcagcccctggacccca 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93486 gcggcaaagtgcggaggatcaccagcgaaggccgggtcctagagcagcccctggacccca 93545
Query: 1396 gcctcatcccaaagctcatgagtttcttgaagctggagaagggcaagttcagcatggtgc 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93546 gcctcatcccaaagctcatgagtttcttgaagctggagaagggcaagttcagcatggtgc 93605
Query: 1456 tcctgaagaagacactgcaggtggaagagcgctacccttaccccgtcaggctggaggcca 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93606 tcctgaagaagacactgcaggtggaagagcgctacccttaccccgtcaggctggaggcca 93665
Query: 1516 tgtacgagatcatcgaccagggccccatccgcaggatagagaagatcaggcagaagggtt 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93666 tgtacgagatcatcgaccagggccccatccgcaggatagagaagatcaggcagaagggtt 93725
Query: 1576 ttgtgcaaaaatgtaaggcctctggggtggagggccaggtggtgcaggaggggaacaatg 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93726 ttgtgcaaaaatgtaaggcctctggggtggagggccaggtggtgcaggaggggaacaatg 93785
Query: 1636 gtggagaggcaggaagaccaggcctgagcagtgagaagaggaaagaagagcagaggagag 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93786 gtggagaggcaggaagaccaggcctgagcagtgagaagaggaaagaagagcagaggagag 93845
Query: 1696 cacaaatgccaccaaccagagaaagccggctgaaggtgctgagaaaaccg 1745
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93846 cacaaatgccaccaaccagagaaagccggctgaaggtgctgagaaaaccg 93895
Score = 1076 bits (543), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Plus
Query: 193 tcctttttcaacatcacattcctgtgttttccctcagcctggaaaacatattaatcccag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91920 tcctttttcaacatcacattcctgtgttttccctcagcctggaaaacatattaatcccag 91979
Query: 253 ggcttttacgctcggaaacaaaaggacgaagccagactgtgggggaaagggtgataagaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91980 ggcttttacgctcggaaacaaaaggacgaagccagactgtgggggaaagggtgataagaa 92039
Query: 313 tcctggaactggaaagagagaaagagcaagattcagaaagagctggggctccactttaag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92040 tcctggaactggaaagagagaaagagcaagattcagaaagagctggggctccactttaag 92099
Query: 373 gggagtccagtgctgtcggctgtggggactggcacacacagacacaagaagccccagcag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92100 gggagtccagtgctgtcggctgtggggactggcacacacagacacaagaagccccagcag 92159
Query: 433 aagcggcagacacatggagatgcaaagacttaaaaggacagctcctttcaccgcatccta 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92160 aagcggcagacacatggagatgcaaagacttaaaaggacagctcctttcaccgcatccta 92219
Query: 493 cttgtcaagaaggtaaaaaggcacagccagaaagaaaagaagacagctcagccgtcaggt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92220 cttgtcaagaaggtaaaaaggcacagccagaaagaaaagaagacagctcagccgtcaggt 92279
Query: 553 ccggacaggcggtggtctgtgtgcggctttgggagctggagctgcagcacacccctttgt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92280 ccggacaggcggtggtctgtgtgcggctttgggagctggagctgcagcacacccctttgt 92339
Query: 613 atcagccagcctctcaaaggagaagagagttcggaggaaaagtatttcatctaggaactg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92340 atcagccagcctctcaaaggagaagagagttcggaggaaaagtatttcatctaggaactg 92399
Query: 673 tcctgggagcacacttcagattgctttttaaaccctccacattccatctccatgagccac 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92400 tcctgggagcacacttcagattgctttttaaaccctccacattccatctccatgagccac 92459
Query: 733 cat 735
|||
Sbjct: 92460 cat 92462
Score = 343 bits (173), Expect = 3e-91
Identities = 176/177 (99%)
Strand = Plus / Plus
Query: 2217 gcaaaggggaaacctcccaaaaagaaaacccaggacaaaattcttagtaatgagtatgag 2276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94671 gcaaaggggaaacctcccaaaaagaaaacccaggacaaaattcttagtaatgagtatgag 94730
Query: 2277 gataagtatgacctcagccggccgacggcgtctcagctggaggaggagttgcaggtgggg 2336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94731 gataagtatgacctcagccggccgacggcgtctcagctggaggaggagttgcaggtgggg 94790
Query: 2337 aacctaccccccaaaaaagcaaaggagtccaaaaagcatgaaaagcttgagaaaccc 2393
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94791 aacctacccccaaaaaaagcaaaggagtccaaaaagcatgaaaagcttgagaaaccc 94847
Score = 252 bits (127), Expect = 9e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 1949 tgcaacagccgaagtgaccactgccagggggtccgtggcctcagagaatctctaccctcc 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94249 tgcaacagccgaagtgaccactgccagggggtccgtggcctcagagaatctctaccctcc 94308
Query: 2009 acccaggaaggagcagcctaaggaaaagccgcagaccaccaggaggcccagcaaagccac 2068
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 94309 acccaggaaggagcagcctaaggaaaagccgcagaccaccaggaagcccagcaaagccac 94368
Query: 2069 cagcttcgaga 2079
|||||||||||
Sbjct: 94369 cagcttcgaga 94379
Score = 202 bits (102), Expect = 7e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 ttcttagtgaagtttccttgatttccagtggctgctgttgtttgagtttggtttggatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91728 ttcttagtgaagtttccttgatttccagtggctgctgttgtttgagtttggtttggatca 91787
Query: 61 aaactgaggttgtcctggcatttctgggattgaatccaggca 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91788 aaactgaggttgtcctggcatttctgggattgaatccaggca 91829
Score = 180 bits (91), Expect = 3e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 2106 atctccgagcccagcacccggcccggcgcgggccgtttccgggacaaccgcacagacaag 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94480 atctccgagcccagcacccggcccggcgcgggccgtttccgggacaaccgcacagacaag 94539
Query: 2166 cgggagcatggccaccgggacccaaatgtgg 2196
|||||||||||||||||||||||||||||||
Sbjct: 94540 cgggagcatggccaccgggacccaaatgtgg 94570
Score = 165 bits (83), Expect = 2e-37
Identities = 96/99 (96%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 2538 caggatgggcaactgaaacccaccaaacatttcactcagagtcccaggaagcctgtgact 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94992 caggatgggcaactgaaacccaccaaacatttcactcagagtcccaggaagcctgtgact 95051
Query: 2598 gacctgctggggccctttgacagc-aacgaaggctcctg 2635
|||||||||||||||||||| || ||||||||||||||
Sbjct: 95052 gacctgctggggccctttgaaggcaaacgaaggctcctg 95090
Score = 63.9 bits (32), Expect = 4e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1858 ctgcaagacctacaaccaccacggcctttcca 1889
||||||||||||||||||||||||||||||||
Sbjct: 94158 ctgcaagacctacaaccaccacggcctttcca 94189
>Sscrofa_Chr13
|| Length = 218635234
Score = 2002 bits (1010), Expect = 0.0
Identities = 1010/1010 (100%)
Strand = Plus / Plus
Query: 736 tggattgcacaatgatatggagaatgggacccagttttaccatgctgttggcattgtggc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788740 tggattgcacaatgatatggagaatgggacccagttttaccatgctgttggcattgtggc 156788799
Query: 796 tggtgtgcggatcagagccccacttgcaggccaggaatagagtgagccatggagggcgga 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788800 tggtgtgcggatcagagccccacttgcaggccaggaatagagtgagccatggagggcgga 156788859
Query: 856 aagcgcctctggtttcccccaccaacagaaggccagctcggttactgaggcacacaggga 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788860 aagcgcctctggtttcccccaccaacagaaggccagctcggttactgaggcacacaggga 156788919
Query: 916 ggtctcagggaattgacagaaccactctgggagaaccaaaccttcagtctctccaaagaa 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788920 ggtctcagggaattgacagaaccactctgggagaaccaaaccttcagtctctccaaagaa 156788979
Query: 976 ggaggagcataccggtgttgagagtggctcacgcaacggcactgccagcctcgctgggca 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788980 ggaggagcataccggtgttgagagtggctcacgcaacggcactgccagcctcgctgggca 156789039
Query: 1036 tcagtggggccccggtgagaactgagcagagaccagcagcccagagctctccccgtcaga 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789040 tcagtggggccccggtgagaactgagcagagaccagcagcccagagctctccccgtcaga 156789099
Query: 1096 tggtccgagatgaggggtcctcgggtcggtcaagaatgttgcgcttcccgtctgggtcca 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789100 tggtccgagatgaggggtcctcgggtcggtcaagaatgttgcgcttcccgtctgggtcca 156789159
Query: 1156 gctctcccaacatccttgccagctttgcagggaagaacagggtgtgggtcatctcggccc 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789160 gctctcccaacatccttgccagctttgcagggaagaacagggtgtgggtcatctcggccc 156789219
Query: 1216 ctcacgcctcggaaggctactaccgcctcatgatgagcctcctgaaggacgacgtgtatt 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789220 ctcacgcctcggaaggctactaccgcctcatgatgagcctcctgaaggacgacgtgtatt 156789279
Query: 1276 gtgagctggcggagaggcacatccagcagatcgtgctgttccaccaggaaggagaagaag 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789280 gtgagctggcggagaggcacatccagcagatcgtgctgttccaccaggaaggagaagaag 156789339
Query: 1336 gcggcaaagtgcggaggatcaccagcgaaggccgggtcctagagcagcccctggacccca 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789340 gcggcaaagtgcggaggatcaccagcgaaggccgggtcctagagcagcccctggacccca 156789399
Query: 1396 gcctcatcccaaagctcatgagtttcttgaagctggagaagggcaagttcagcatggtgc 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789400 gcctcatcccaaagctcatgagtttcttgaagctggagaagggcaagttcagcatggtgc 156789459
Query: 1456 tcctgaagaagacactgcaggtggaagagcgctacccttaccccgtcaggctggaggcca 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789460 tcctgaagaagacactgcaggtggaagagcgctacccttaccccgtcaggctggaggcca 156789519
Query: 1516 tgtacgagatcatcgaccagggccccatccgcaggatagagaagatcaggcagaagggtt 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789520 tgtacgagatcatcgaccagggccccatccgcaggatagagaagatcaggcagaagggtt 156789579
Query: 1576 ttgtgcaaaaatgtaaggcctctggggtggagggccaggtggtgcaggaggggaacaatg 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789580 ttgtgcaaaaatgtaaggcctctggggtggagggccaggtggtgcaggaggggaacaatg 156789639
Query: 1636 gtggagaggcaggaagaccaggcctgagcagtgagaagaggaaagaagagcagaggagag 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789640 gtggagaggcaggaagaccaggcctgagcagtgagaagaggaaagaagagcagaggagag 156789699
Query: 1696 cacaaatgccaccaaccagagaaagccggctgaaggtgctgagaaaaccg 1745
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789700 cacaaatgccaccaaccagagaaagccggctgaaggtgctgagaaaaccg 156789749
Score = 1076 bits (543), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Plus
Query: 193 tcctttttcaacatcacattcctgtgttttccctcagcctggaaaacatattaatcccag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787774 tcctttttcaacatcacattcctgtgttttccctcagcctggaaaacatattaatcccag 156787833
Query: 253 ggcttttacgctcggaaacaaaaggacgaagccagactgtgggggaaagggtgataagaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787834 ggcttttacgctcggaaacaaaaggacgaagccagactgtgggggaaagggtgataagaa 156787893
Query: 313 tcctggaactggaaagagagaaagagcaagattcagaaagagctggggctccactttaag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787894 tcctggaactggaaagagagaaagagcaagattcagaaagagctggggctccactttaag 156787953
Query: 373 gggagtccagtgctgtcggctgtggggactggcacacacagacacaagaagccccagcag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787954 gggagtccagtgctgtcggctgtggggactggcacacacagacacaagaagccccagcag 156788013
Query: 433 aagcggcagacacatggagatgcaaagacttaaaaggacagctcctttcaccgcatccta 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788014 aagcggcagacacatggagatgcaaagacttaaaaggacagctcctttcaccgcatccta 156788073
Query: 493 cttgtcaagaaggtaaaaaggcacagccagaaagaaaagaagacagctcagccgtcaggt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788074 cttgtcaagaaggtaaaaaggcacagccagaaagaaaagaagacagctcagccgtcaggt 156788133
Query: 553 ccggacaggcggtggtctgtgtgcggctttgggagctggagctgcagcacacccctttgt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788134 ccggacaggcggtggtctgtgtgcggctttgggagctggagctgcagcacacccctttgt 156788193
Query: 613 atcagccagcctctcaaaggagaagagagttcggaggaaaagtatttcatctaggaactg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788194 atcagccagcctctcaaaggagaagagagttcggaggaaaagtatttcatctaggaactg 156788253
Query: 673 tcctgggagcacacttcagattgctttttaaaccctccacattccatctccatgagccac 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156788254 tcctgggagcacacttcagattgctttttaaaccctccacattccatctccatgagccac 156788313
Query: 733 cat 735
|||
Sbjct: 156788314 cat 156788316
Score = 858 bits (433), Expect = 0.0
Identities = 442/445 (99%)
Strand = Plus / Plus
Query: 1949 tgcaacagccgaagtgaccactgccagggggtccgtggcctcagagaatctctaccctcc 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789953 tgcaacagccgaagtgaccactgccagggggtccgtggcctcagagaatctctaccctcc 156790012
Query: 2009 acccaggaaggagcagcctaaggaaaagccgcagaccaccaggaggcccagcaaagccac 2068
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 156790013 acccaggaaggagcagcctaaggaaaagccgcagaccaccaggaagcccagcaaagccac 156790072
Query: 2069 cagcttcgagagcttcacgactgcccctcccaccaccatctccgagcccagcacccggcc 2128
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156790073 cagcttcgagagcttcacggctgcccctcccaccaccatctccgagcccagcacccggcc 156790132
Query: 2129 cggcgcgggccgtttccgggacaaccgcacagacaagcgggagcatggccaccgggaccc 2188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156790133 cggcgcgggccgtttccgggacaaccgcacagacaagcgggagcatggccaccgggaccc 156790192
Query: 2189 aaatgtggtgccaggtcctcacaagccagcaaaggggaaacctcccaaaaagaaaaccca 2248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156790193 aaatgtggtgccaggtcctcacaagccagcaaaggggaaacctcccaaaaagaaaaccca 156790252
Query: 2249 ggacaaaattcttagtaatgagtatgaggataagtatgacctcagccggccgacggcgtc 2308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156790253 ggacaaaattcttagtaatgagtatgaggataagtatgacctcagccggccgacggcgtc 156790312
Query: 2309 tcagctggaggaggagttgcaggtggggaacctaccccccaaaaaagcaaaggagtccaa 2368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 156790313 tcagctggaggaggagttgcaggtggggaacctacccccaaaaaaagcaaaggagtccaa 156790372
Query: 2369 aaagcatgaaaagcttgagaaaccc 2393
|||||||||||||||||||||||||
Sbjct: 156790373 aaagcatgaaaagcttgagaaaccc 156790397
Score = 202 bits (102), Expect = 7e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 ttcttagtgaagtttccttgatttccagtggctgctgttgtttgagtttggtttggatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787582 ttcttagtgaagtttccttgatttccagtggctgctgttgtttgagtttggtttggatca 156787641
Query: 61 aaactgaggttgtcctggcatttctgggattgaatccaggca 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156787642 aaactgaggttgtcctggcatttctgggattgaatccaggca 156787683
Score = 165 bits (83), Expect = 2e-37
Identities = 96/99 (96%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 2538 caggatgggcaactgaaacccaccaaacatttcactcagagtcccaggaagcctgtgact 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156790542 caggatgggcaactgaaacccaccaaacatttcactcagagtcccaggaagcctgtgact 156790601
Query: 2598 gacctgctggggccctttgacagc-aacgaaggctcctg 2635
|||||||||||||||||||| || ||||||||||||||
Sbjct: 156790602 gacctgctggggccctttgaaggcaaacgaaggctcctg 156790640
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1809 gctccagtcacaacagtgactcgggccacctctcgggtggtgaccatagctgcaagacct 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156789813 gctccagtcacaacagtgactcgggccacctctcgggtggtgaccatagctgcaagacct 156789872
Query: 1869 acaaccaccacggcctttcca 1889
|||||||||||||||||||||
Sbjct: 156789873 acaaccaccacggcctttcca 156789893
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 72,838,162
Number of extensions: 641
Number of successful extensions: 641
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 14
Length of query: 2658
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2636
Effective length of database: 2,808,408,574
Effective search space: 7402965001064
Effective search space used: 7402965001064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)