Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_898906.1| RNA-binding protein NOB1 [Bos taurus]. 721 0.0
>ref|NP_898906.1| RNA-binding protein NOB1 [Bos taurus].
Length = 413
Score = 721 bits (1861), Expect = 0.0
Identities = 360/413 (87%), Positives = 376/413 (91%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MAPVEHVVADAGAFL +AALQDIGKNIYTIR+V+SEIRDKATRRRLAVLPYELRFKEPFP
Sbjct: 1 MAPVEHVVADAGAFLLDAALQDIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSS QHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSIQHPE 120
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
TPLH+SGFHLPSKPK P+ETVEH PA EDLEF+SF+FWRNPLP+ID +LQELL+DGG
Sbjct: 121 TPLHVSGFHLPSKPKPPRETVEHRHPASEPEDLEFSSFMFWRNPLPNIDCELQELLMDGG 180
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXXWITPSNIKQIQQELERCSVPKDVRVGCVTTDF 823
E VP+ WITPSNIKQIQQE+++C+VPKDVRVGCVTTDF
Sbjct: 181 EDVPNEEEDEENGLDERQDEDSDDDGGGWITPSNIKQIQQEMKQCAVPKDVRVGCVTTDF 240
Query: 824 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 1003
AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFC+HCGNKTLKKVSVT
Sbjct: 241 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGNKTLKKVSVT 300
Query: 1004 VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT 1183
VSDDGTLHMHFSRNPKVLNPRGLRYSLP PKGGKYAINPHLTEDQRFP LRLSRK RQKT
Sbjct: 301 VSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPSLRLSRKGRQKT 360
Query: 1184 DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
D FAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 361 DGFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 413
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,358,373
Number of extensions: 1830627
Number of successful extensions: 9137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9031
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 385
Effective length of database: 14,174,046
Effective search space: 5457007710
Effective search space used: 5457007710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546853.2| PREDICTED: similar to nin one binding protein i... 708 0.0
Alignment gi|XP_863212.1| PREDICTED: similar to nin one binding protein i... 649 0.0
>ref|XP_546853.2| PREDICTED: similar to nin one binding protein isoform 1 [Canis
familiaris].
Length = 414
Score = 708 bits (1828), Expect = 0.0
Identities = 356/414 (85%), Positives = 377/414 (91%), Gaps = 1/414 (0%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MA VEHVVADAGAFL++AALQDIGKNIYT+RDVVSEIRDKATRRRLAVLPYELRFKEP P
Sbjct: 1 MAAVEHVVADAGAFLRDAALQDIGKNIYTVRDVVSEIRDKATRRRLAVLPYELRFKEPCP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLK+EPEKVKVSSSSQHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKREPEKVKVSSSSQHPE 120
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
TPL+ISGFHLPSKPK P+ETV+ G PA E+LEF+SF+FWRNPLP+IDR+LQELL+D G
Sbjct: 121 TPLYISGFHLPSKPKPPRETVQCGHPAAEPENLEFSSFMFWRNPLPNIDRELQELLLDKG 180
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXX-WITPSNIKQIQQELERCSVPKDVRVGCVTTD 820
+ VPS WITPSNIKQIQ+ELE+C+VPK VRVGCVTTD
Sbjct: 181 DDVPSEEDEEGENGFEESKDEDSDDDGGGWITPSNIKQIQRELEQCAVPKGVRVGCVTTD 240
Query: 821 FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV 1000
FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV
Sbjct: 241 FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV 300
Query: 1001 TVSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQK 1180
TVSDDG+LHMHFSRNPKVLNPRGLRYSLP PKGGKYAINPHLTEDQRFPQLRLSRKARQK
Sbjct: 301 TVSDDGSLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSRKARQK 360
Query: 1181 TDVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
TDVFAPDY+AGVSPFAENDISSRSATLQ+RD+ LGAGRRRLNPNASRKKFVKKR
Sbjct: 361 TDVFAPDYIAGVSPFAENDISSRSATLQIRDNALGAGRRRLNPNASRKKFVKKR 414
>ref|XP_863212.1| PREDICTED: similar to nin one binding protein isoform 2 [Canis
familiaris].
Length = 390
Score = 649 bits (1673), Expect = 0.0
Identities = 333/414 (80%), Positives = 353/414 (85%), Gaps = 1/414 (0%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MA VEHVVADAGAFL++AALQDIGKNIYT+RDVVSEIRDKATRRRLAVLPYELRFKEP P
Sbjct: 1 MAAVEHVVADAGAFLRDAALQDIGKNIYTVRDVVSEIRDKATRRRLAVLPYELRFKEPCP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLK+EPEK
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKREPEK----------- 109
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
PK P+ETV+ G PA E+LEF+SF+FWRNPLP+IDR+LQELL+D G
Sbjct: 110 -------------PKPPRETVQCGHPAAEPENLEFSSFMFWRNPLPNIDRELQELLLDKG 156
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXX-WITPSNIKQIQQELERCSVPKDVRVGCVTTD 820
+ VPS WITPSNIKQIQ+ELE+C+VPK VRVGCVTTD
Sbjct: 157 DDVPSEEDEEGENGFEESKDEDSDDDGGGWITPSNIKQIQRELEQCAVPKGVRVGCVTTD 216
Query: 821 FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV 1000
FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV
Sbjct: 217 FAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSV 276
Query: 1001 TVSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQK 1180
TVSDDG+LHMHFSRNPKVLNPRGLRYSLP PKGGKYAINPHLTEDQRFPQLRLSRKARQK
Sbjct: 277 TVSDDGSLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSRKARQK 336
Query: 1181 TDVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
TDVFAPDY+AGVSPFAENDISSRSATLQ+RD+ LGAGRRRLNPNASRKKFVKKR
Sbjct: 337 TDVFAPDYIAGVSPFAENDISSRSATLQIRDNALGAGRRRLNPNASRKKFVKKR 390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,696,824
Number of extensions: 1870274
Number of successful extensions: 9029
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8931
Number of HSP's successfully gapped: 2
Length of query: 491
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 384
Effective length of database: 15,307,552
Effective search space: 5878099968
Effective search space used: 5878099968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054781.1| RNA-binding protein NOB1 [Homo sapiens]. 707 0.0
>ref|NP_054781.1| RNA-binding protein NOB1 [Homo sapiens].
Length = 412
Score = 707 bits (1825), Expect = 0.0
Identities = 357/413 (86%), Positives = 373/413 (90%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MAPVEHVVADAGAFL++AALQDIGKNIYTIR+VV+EIRDKATRRRLAVLPYELRFKEP P
Sbjct: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP+KVKVSSS QHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
TPLHISGFHLP KPK PQET E G A E+LEF+SF+FWRNPLP+ID +LQELLID G
Sbjct: 121 TPLHISGFHLPYKPKPPQET-EKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRG 179
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXXWITPSNIKQIQQELERCSVPKDVRVGCVTTDF 823
E VPS WITPSNIKQIQQELE+C VP+DVRVGC+TTDF
Sbjct: 180 EDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDF 239
Query: 824 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 1003
AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT
Sbjct: 240 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 299
Query: 1004 VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT 1183
VSDDGTLHMHFSRNPKVLNPRGLRYSLP PKGGKYAINPHLTEDQRFPQLRLS+KARQKT
Sbjct: 300 VSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKT 359
Query: 1184 DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
+VFAPDY+AGVSPF ENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 360 NVFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,507,358
Number of extensions: 1828102
Number of successful extensions: 8639
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8544
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 384
Effective length of database: 14,770,016
Effective search space: 5671686144
Effective search space used: 5671686144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080553.1| RNA-binding protein NOB1 [Mus musculus]. 678 0.0
>ref|NP_080553.1| RNA-binding protein NOB1 [Mus musculus].
Length = 403
Score = 678 bits (1749), Expect = 0.0
Identities = 341/413 (82%), Positives = 361/413 (87%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MAPVEHVVADAGAFL++A LQDIGKNIYTIR+VV EIRDKATRRRLAVLPY+LRFKEP P
Sbjct: 1 MAPVEHVVADAGAFLRDAPLQDIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLK+EPEK KVSSS QHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEPEKAKVSSSIQHPE 120
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
T LHISGFHLPSK K QE V+ G A E+LEF+SF+FWR PLP+IDR+LQELLIDG
Sbjct: 121 TALHISGFHLPSKSKPLQEAVDRGHAADGPENLEFSSFMFWRTPLPNIDRELQELLIDGR 180
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXXWITPSNIKQIQQELERCSVPKDVRVGCVTTDF 823
E WITPSNIKQIQQELE+C P+DV+VGCVTTDF
Sbjct: 181 E----------EEEEEEECEDSDDDGGGWITPSNIKQIQQELEQCDTPEDVQVGCVTTDF 230
Query: 824 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 1003
AMQNVLLQMGLHVLAVNGML+REARSYILRCHGCFKTTSDM+RVFC HCGNKTLKKVSVT
Sbjct: 231 AMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVT 290
Query: 1004 VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT 1183
++DDGTLHMHFSRNPKVLNPRGLRYSLP PKGGKYAINPHLTEDQRFPQLRLS+KARQKT
Sbjct: 291 INDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKT 350
Query: 1184 DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
DVFAPDY+AGVSPFAENDISSRSA LQVRD LGAGRRRLNPNASRKKFVKKR
Sbjct: 351 DVFAPDYIAGVSPFAENDISSRSAILQVRDGMLGAGRRRLNPNASRKKFVKKR 403
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,000,750
Number of extensions: 1524683
Number of successful extensions: 6941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6849
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 386
Effective length of database: 12,463,779
Effective search space: 4811018694
Effective search space used: 4811018694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126949.1| PREDICTED: RNA-binding protein NOB1-like [Su... 773 0.0
>ref|XP_003126949.1| PREDICTED: RNA-binding protein NOB1-like [Sus scrofa].
Length = 413
Score = 773 bits (1997), Expect = 0.0
Identities = 389/413 (94%), Positives = 389/413 (94%)
Frame = +2
Query: 104 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 283
MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP
Sbjct: 1 MAPVEHVVADAGAFLQNAALQDIGKNIYTIRDVVSEIRDKATRRRLAVLPYELRFKEPFP 60
Query: 284 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 463
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSSQHPE 120
Query: 464 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 643
TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG
Sbjct: 121 TPLHISGFHLPSKPKRPQETVEHGEPARASEDLEFTSFVFWRNPLPDIDRDLQELLIDGG 180
Query: 644 ECVPSXXXXXXXXXXXXXXXXXXXXXXXWITPSNIKQIQQELERCSVPKDVRVGCVTTDF 823
CVPS WITPSNIKQIQQELERCSVPKDVRVGCVTTDF
Sbjct: 181 GCVPSEEEKEEDGLEEGKDQDSDDDGGGWITPSNIKQIQQELERCSVPKDVRVGCVTTDF 240
Query: 824 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 1003
AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT
Sbjct: 241 AMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVT 300
Query: 1004 VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT 1183
VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT
Sbjct: 301 VSDDGTLHMHFSRNPKVLNPRGLRYSLPAPKGGKYAINPHLTEDQRFPQLRLSRKARQKT 360
Query: 1184 DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 1342
DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 361 DVFAPDYVAGVSPFAENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 413
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,916,114
Number of extensions: 1180292
Number of successful extensions: 5788
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5739
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 388
Effective length of database: 8,779,541
Effective search space: 3406461908
Effective search space used: 3406461908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002493
(1473 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 731 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 731 bits (369), Expect = 0.0
Identities = 395/401 (98%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 1075 gtactcactccccgctcccaaagggggcaagtacgccatcaacccccacctgaccgagga 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16182072 gtactcactccccgctcccaaagggggcaagtacgccatcaacccccacctgaccgagga 16182013
Query: 1135 ccagcgcttccctcaactgcggctctcccgcaaggccaggcagaaaaccgacgtgtttgc 1194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16182012 ccagcgcttccctcaactgcggctgtcccgcaaggccaggcagaaaaccgacgtgtttgc 16181953
Query: 1195 ccccgactacgtagctggggtgtctccttttgcagagaacgacatctccagccggtcggc 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181952 ccccgactacgtagctggggtgtctccttttgcagagaacgacatctccagccggtcggc 16181893
Query: 1255 taccctgcaggtccgagacagcaccctgggagccgggaggagacggttaaatcccaatgc 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181892 taccctgcaggtccgagacagcaccctgggagccgggaggagacggttaaatcccaatgc 16181833
Query: 1315 ttccagaaagaagtttgtgaagaaaaggtgaaggggggctcacaggcaagctggactgct 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181832 ttccagaaagaagtttgtgaagaaaaggtgaaggggggctcacaggcaagctggactgct 16181773
Query: 1375 gccgtggctgccggggagtcccgtgtgtcgcccccagctgtgccggaccgagggagtgga 1434
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16181772 gccgtggctgccggggagtcccatgtgtcgcccccagctgtgccggaccgagggagtggg 16181713
Query: 1435 cctggctt-ccagtgctg-cccaggacttgccgtgttgcct 1473
|||||||| ||||||||| |||||||||||||||| |||||
Sbjct: 16181712 cctggcttcccagtgctgccccaggacttgccgtggtgcct 16181672
Score = 377 bits (190), Expect = e-101
Identities = 199/202 (98%)
Strand = Plus / Minus
Query: 631 gattgacggaggtgagtgtgttccgagtgaggaggagaaggaagaggatggattggaaga 690
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16188446 gattgacggaggtgggtgtgttccgagtgaggaggagaaggaagaggacggattggaaga 16188387
Query: 691 agggaaggaccaagacagtgatgacgacgggggcgggtggataacccccagcaacatcaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16188386 agggaaggaccaagacagtgatgacgacgggggcgggtggataacccccagcaacatcaa 16188327
Query: 751 gcagatccagcaggagctggagcggtgctctgtccccaaggatgtgcgggtcggctgtgt 810
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16188326 gcagatccagcaggagctggagcggtgctctgtccccaaggacgtgcgggtcggctgtgt 16188267
Query: 811 gaccacggacttcgccatgcag 832
||||||||||||||||||||||
Sbjct: 16188266 gaccacggacttcgccatgcag 16188245
Score = 323 bits (163), Expect = 2e-85
Identities = 166/167 (99%)
Strand = Plus / Minus
Query: 1 gcttagtcgcctctgttcttctccgcttccagaggccctgattgggactgagggggcggt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16193103 gcttagtcgcctctgttcttctcggcttccagaggccctgattgggactgagggggcggt 16193044
Query: 61 gcgagctccgtgcgcatgtgcgctccggcccatcttggccaagatggcgccggtggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16193043 gcgagctccgtgcgcatgtgcgctccggcccatcttggccaagatggcgccggtggagca 16192984
Query: 121 cgttgtggccgatgccggggcttttctgcagaacgcggctctgcagg 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16192983 cgttgtggccgatgccggggcttttctgcagaacgcggctctgcagg 16192937
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 931 gaccacgtccgacatgagccgagtgttctgttcacactgtggaaacaagaccctgaagaa 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16184273 gaccacgtccgacatgagccgagtgttctgttcacactgtggaaacaagaccctgaagaa 16184214
Query: 991 ggtgtctgtgaccgtcagcgacgacggaaccctgcacatgcacttctcccgcaaccccaa 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16184213 ggtgtctgtgaccgtcagcgacgacggaaccctgcacatgcacttctcccgcaaccccaa 16184154
Query: 1051 ggtgctgaatccgcggggcctccgg 1075
|||||||||||||||||||||||||
Sbjct: 16184153 ggtgctgaatccgcggggcctccgg 16184129
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 163 gcaggacatcgggaagaacatctacaccattagggatgtggttagcgagattcgagacaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16192819 gcaggacatcgggaagaacatctacaccattagggatgtggttagcgagattcgagacaa 16192760
Query: 223 ggccacgcgcaggaggctcgcggtcctgccctacgagctgcgtttcaaggagcccttccc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16192759 ggccacgcgcaggaggctcgcggtcctgccctacgagctgcgtttcaaggagcccttccc 16192700
Query: 283 ggaatacgtgcggctgg 299
|||||||||||||||||
Sbjct: 16192699 ggaatacgtgcggctgg 16192683
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 299 gtaactgagttttcaaagaaaacgggagactatcccagcctctctgccacagatatccaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190863 gtaactgagttttcaaagaaaacgggagactatcccagcctctctgccacagatatccaa 16190804
Query: 359 gtattggcactcacctaccagttggaagcagagttcgttggggtgtctcacctaaaacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190803 gtattggcactcacctaccagttggaagcagagttcgttggggtgtctcacctaaaacaa 16190744
Query: 419 gaaccagaaaaggt 432
||||||||||||||
Sbjct: 16190743 gaaccagaaaaggt 16190730
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 501 agcctaaacgtccacaagaaacagtagaacatggagagccagccagggcgtctgaggacc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16188668 agcctaaacgtccacaagaaacagtagaacatggagagccagccagggcgtctgaggacc 16188609
Query: 561 tagaattcacttcctttgtgttctggagaaacccgttgcctgacattgatcgtgacctgc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16188608 tagaattcacttcctttgtgttctggagaaacccgttgcctgacattgatcgtgacctgc 16188549
Query: 621 aggagctgctg 631
|||||||||||
Sbjct: 16188548 aggagctgctg 16188538
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 828 tgcagaacgtcctgctccagatggggctgcacgtgctggctgtgaacggcatgctgatcc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187393 tgcagaacgtcctgctccagatggggctgcacgtgctggctgtgaacggcatgctgatcc 16187334
Query: 888 gtgaggcccggagctacatcttgcgctgccacggctgtttcaag 931
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187333 gtgaggcccggagctacatcttgcgctgccacggctgtttcaag 16187290
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 427 aaaggtgaaagtgagttcatcgtctcagcacccagaaactcctctgcacatttctggttt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16188951 aaaggtgaaagtgagttcatcgtctcagcacccagaaactcctctgcacatttctggttt 16188892
Query: 487 ccatctgccctcaaag 502
||||||||||||||||
Sbjct: 16188891 ccatctgccctcaaag 16188876
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,515,102
Number of extensions: 314
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 9
Length of query: 1473
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1452
Effective length of database: 2,808,413,156
Effective search space: 4077815902512
Effective search space used: 4077815902512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)