Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus]. 451 e-127
Alignment gi|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [... 392 e-109
Alignment gi|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos... 392 e-109
Alignment gi|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus]. 159 3e-39
Alignment gi|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [... 158 7e-39
Alignment gi|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos t... 158 7e-39
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 151 1e-36
Alignment gi|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus]. 149 3e-36
Alignment gi|NP_001030387.1| proteasome subunit alpha type-1 [Bos taurus]. 133 2e-31
Alignment gi|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus]. 132 5e-31
>ref|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus].
Length = 248
Score = 451 bits (1161), Expect = e-127
Identities = 229/232 (98%), Positives = 231/232 (99%)
Frame = +1
Query: 139 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR 318
MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRG+DIVVLGVEKKSVA+LQDERTVR
Sbjct: 1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVR 60
Query: 319 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 498
KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
Query: 499 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 678
SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180
Query: 679 IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
IETD LTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI
Sbjct: 181 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 232
>ref|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 392 bits (1006), Expect = e-109
Identities = 195/230 (84%), Positives = 215/230 (93%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VIN+ARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK+ + +EIE V EI
Sbjct: 185 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEI 234
>ref|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 392 bits (1006), Expect = e-109
Identities = 195/230 (84%), Positives = 215/230 (93%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VIN+ARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK+ + +EIE V EI
Sbjct: 185 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEI 234
>ref|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus].
Length = 234
Score = 159 bits (403), Expect = 3e-39
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E++ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233
>ref|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [Bos taurus].
Length = 234
Score = 158 bits (400), Expect = 7e-39
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSCGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E++ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233
>ref|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos taurus].
Length = 234
Score = 158 bits (400), Expect = 7e-39
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSCGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E++ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 151 bits (381), Expect = 1e-36
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus].
Length = 261
Score = 149 bits (377), Expect = 3e-36
Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 321
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183
Query: 682 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|NP_001030387.1| proteasome subunit alpha type-1 [Bos taurus].
Length = 263
Score = 133 bits (335), Expect = 2e-31
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 124 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 183 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233
>ref|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus].
Length = 246
Score = 132 bits (332), Expect = 5e-31
Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 4/234 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 321
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 682 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +IL EI+ ++ +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,462,755
Number of extensions: 868312
Number of successful extensions: 4356
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4115
Number of HSP's successfully gapped: 12
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha ... 389 e-108
Alignment gi|XP_547630.2| PREDICTED: similar to proteasome (prosome, macr... 385 e-107
Alignment gi|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha ... 159 3e-39
Alignment gi|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha ... 151 1e-36
Alignment gi|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha ... 149 3e-36
Alignment gi|XP_856136.1| PREDICTED: similar to Proteasome subunit alpha ... 146 3e-35
Alignment gi|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha ... 132 4e-31
Alignment gi|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha ... 132 4e-31
Alignment gi|XP_534070.2| PREDICTED: similar to Proteasome subunit alpha ... 132 6e-31
Alignment gi|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha ... 130 2e-30
>ref|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha type 7 (Proteasome
subunit RC6-1) [Canis familiaris].
Length = 434
Score = 389 bits (998), Expect = e-108
Identities = 197/200 (98%), Positives = 199/200 (99%)
Frame = +1
Query: 235 VGVRGRDIVVLGVEKKSVARLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ 414
VGVRG+DIVVLGVEKKSVA+LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ
Sbjct: 219 VGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ 278
Query: 415 SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGT 594
SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGT
Sbjct: 279 SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGT 338
Query: 595 YHAWKANAIGRGAKSVREFLEKNYTDEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMR 774
YHAWKANAIGRGAKSVREFLEKNYTDEAIETD LTIKLVIKALLEVVQSGGKNIELAVMR
Sbjct: 339 YHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMR 398
Query: 775 RDQPLKILNPEEIEKYVAEI 834
RDQPLKILNPEEIEKYVAEI
Sbjct: 399 RDQPLKILNPEEIEKYVAEI 418
>ref|XP_547630.2| PREDICTED: similar to proteasome (prosome, macropain) subunit,
alpha type, 8 isoform 2 [Canis familiaris].
Length = 222
Score = 385 bits (990), Expect = e-107
Identities = 191/216 (88%), Positives = 206/216 (95%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG DIVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTDIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLK 792
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK
Sbjct: 185 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLK 220
>ref|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 1 [Canis
familiaris].
Length = 234
Score = 159 bits (403), Expect = 3e-39
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E++ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233
>ref|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
zeta chain) (Macropain zeta chain) (Multicatalytic
endopeptidase complex zeta chain) isoform 1 [Canis
familiaris].
Length = 241
Score = 151 bits (381), Expect = 1e-36
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha type 4 (Proteasome
component C9) (Macropain subunit C9) (Multicatalytic
endopeptidase complex subunit C9) (Proteasome subunit L)
[Canis familiaris].
Length = 261
Score = 149 bits (377), Expect = 3e-36
Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 321
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183
Query: 682 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|XP_856136.1| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 3 [Canis
familiaris].
Length = 183
Score = 146 bits (369), Expect = 3e-35
Identities = 73/176 (41%), Positives = 113/176 (64%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 660
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK
Sbjct: 122 TQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176
>ref|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 8 [Canis
familiaris].
Length = 246
Score = 132 bits (333), Expect = 4e-31
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 4/234 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 321
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 682 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +IL+ EI+ ++ +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLVAL 242
>ref|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 2 [Canis
familiaris].
Length = 246
Score = 132 bits (333), Expect = 4e-31
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 4/234 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 321
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 682 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +IL+ EI+ ++ +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLVAL 242
>ref|XP_534070.2| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 368
Score = 132 bits (332), Expect = 6e-31
Identities = 77/231 (33%), Positives = 130/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 111 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 168
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 169 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 228
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ +
Sbjct: 229 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSGFMEC 287
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 288 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 338
>ref|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 5 [Canis
familiaris].
Length = 246
Score = 130 bits (328), Expect = 2e-30
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 4/234 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 321
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
RP + +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 129 AEMRPLELCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 682 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +IL+ EI+ ++ +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLVAL 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,331,355
Number of extensions: 775045
Number of successful extensions: 4484
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4262
Number of HSP's successfully gapped: 28
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens]. 449 e-126
Alignment gi|NP_001020267.1| proteasome subunit alpha type-7-like isoform... 395 e-110
Alignment gi|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 ... 388 e-108
Alignment gi|NP_001020268.1| proteasome subunit alpha type-7-like isoform... 310 1e-84
Alignment gi|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens]. 159 3e-39
Alignment gi|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo... 151 1e-36
Alignment gi|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [H... 149 3e-36
Alignment gi|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo... 149 3e-36
Alignment gi|NP_002777.1| proteasome subunit alpha type-1 isoform 2 [Homo... 133 2e-31
Alignment gi|NP_683877.1| proteasome subunit alpha type-1 isoform 1 [Homo... 133 2e-31
>ref|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens].
Length = 248
Score = 449 bits (1156), Expect = e-126
Identities = 229/232 (98%), Positives = 230/232 (99%)
Frame = +1
Query: 139 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR 318
MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVA+LQDERTVR
Sbjct: 1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR 60
Query: 319 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 498
KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
Query: 499 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 678
SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180
Query: 679 IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
IETD LTIKLVIKALLEVVQSGGKNIELAVMRRDQ LKILNPEEIEKYVAEI
Sbjct: 181 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232
>ref|NP_001020267.1| proteasome subunit alpha type-7-like isoform 2 [Homo sapiens].
Length = 250
Score = 395 bits (1014), Expect = e-110
Identities = 196/230 (85%), Positives = 216/230 (93%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+D IKL IKALLEVVQSGGKNIELA++RR+QPLK+ + +E+E YV EI
Sbjct: 185 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 234
>ref|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 [Homo sapiens].
Length = 256
Score = 388 bits (997), Expect = e-108
Identities = 196/236 (83%), Positives = 216/236 (91%), Gaps = 6/236 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFA------GLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQ 486
CALDD+VCMAFA GLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ
Sbjct: 65 CALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQ 124
Query: 487 RYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY 666
+YTQSNGRRPFGISALIVGFD DG RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNY
Sbjct: 125 KYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNY 184
Query: 667 TDEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
T++AI +D IKL IKALLEVVQSGGKNIELA++RR+QPLK+ + +E+E YV EI
Sbjct: 185 TEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 240
>ref|NP_001020268.1| proteasome subunit alpha type-7-like isoform 3 [Homo sapiens].
Length = 212
Score = 310 bits (794), Expect = 1e-84
Identities = 162/230 (70%), Positives = 179/230 (77%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRG------------------------- 39
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
LTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 40 -------------LTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 86
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 87 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 146
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+D IKL IKALLEVVQSGGKNIELA++RR+QPLK+ + +E+E YV EI
Sbjct: 147 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 196
>ref|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens].
Length = 234
Score = 159 bits (403), Expect = 3e-39
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E++ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233
>ref|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo sapiens].
Length = 241
Score = 151 bits (381), Expect = 1e-36
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 149 bits (377), Expect = 3e-36
Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 321
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183
Query: 682 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 149 bits (377), Expect = 3e-36
Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 321
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183
Query: 682 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|NP_002777.1| proteasome subunit alpha type-1 isoform 2 [Homo sapiens].
Length = 263
Score = 133 bits (335), Expect = 2e-31
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 124 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 183 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233
>ref|NP_683877.1| proteasome subunit alpha type-1 isoform 1 [Homo sapiens].
Length = 269
Score = 133 bits (335), Expect = 2e-31
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 12 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 69
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 70 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 129
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 130 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 188
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 189 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,493,987
Number of extensions: 740753
Number of successful extensions: 4170
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3953
Number of HSP's successfully gapped: 20
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus]. 450 e-127
Alignment gi|NP_001157081.1| proteasome subunit alpha type-7-like [Mus mu... 394 e-110
Alignment gi|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus]. 159 4e-39
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 151 1e-36
Alignment gi|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus]. 149 4e-36
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 148 8e-36
Alignment gi|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus]. 133 3e-31
Alignment gi|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus]. 130 2e-30
Alignment gi|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus]. 121 1e-27
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 58 1e-08
>ref|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus].
Length = 248
Score = 450 bits (1158), Expect = e-127
Identities = 228/232 (98%), Positives = 231/232 (99%)
Frame = +1
Query: 139 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR 318
MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRG+DIVVLGVEKKSVA+LQDERTVR
Sbjct: 1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVR 60
Query: 319 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 498
KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
Query: 499 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 678
SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD+A
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDA 180
Query: 679 IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
IETD LTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI
Sbjct: 181 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 232
>ref|NP_001157081.1| proteasome subunit alpha type-7-like [Mus musculus].
Length = 250
Score = 394 bits (1013), Expect = e-110
Identities = 197/230 (85%), Positives = 216/230 (93%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VI+RARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIS 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL IKALLEVVQSGGKNIELA++RRDQPLK+ + +EIE V+EI
Sbjct: 185 NDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEI 234
>ref|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus].
Length = 234
Score = 159 bits (402), Expect = 4e-39
Identities = 89/235 (37%), Positives = 139/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 133 AGMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERT 312
A Y ++T FSP G L Q+EYA AV G+ +VG++ + VVL EKK + L DER+
Sbjct: 2 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERS 61
Query: 313 VRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY 492
V K+ + ++ + ++G+ D R++++RAR Q + L ++P+ + + +AS+ Q Y
Sbjct: 62 VHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY 121
Query: 493 TQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 672
TQS G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+ + + FLEK Y +
Sbjct: 122 TQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 673 EAIETDGL-TIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ D + T L +K E Q NIE+ + + + L P E+ Y+A I
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEVGIC-NEAGFRRLTPTEVRDYLAAI 233
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 151 bits (381), Expect = 1e-36
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus].
Length = 261
Score = 149 bits (376), Expect = 4e-36
Identities = 79/234 (33%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 321
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183
Query: 682 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
T + L +K L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 184 MTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVEQLI 237
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 148 bits (373), Expect = 8e-36
Identities = 82/235 (34%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
Y+R + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YNRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIIFKQVMEEKLNTTNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus].
Length = 263
Score = 133 bits (334), Expect = 3e-31
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 124 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 183 NLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233
>ref|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus].
Length = 246
Score = 130 bits (327), Expect = 2e-30
Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 4/234 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 321
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 322 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 501
+ + +++ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 502 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 681
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 682 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +IL EI+ ++ +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242
>ref|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus].
Length = 255
Score = 121 bits (303), Expect = 1e-27
Identities = 67/200 (33%), Positives = 116/200 (58%)
Frame = +1
Query: 136 GMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV 315
G YD + + FSPDG +FQVEYA +AV+ STA+G+R +D VV GVEK +++L +E +
Sbjct: 5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 64
Query: 316 RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 495
+++ +D +V MA AGL ADAR + + AR E + R + ++++ +A YT
Sbjct: 65 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT 124
Query: 496 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 675
+ RPFG S ++ + + +LY DPSG + + AIG+ ++ + +EK
Sbjct: 125 LYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK----- 179
Query: 676 AIETDGLTIKLVIKALLEVV 735
++ +T + V+K + +++
Sbjct: 180 -LQMKEMTCRDVVKEVAKII 198
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 57.8 bits (138), Expect = 1e-08
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Frame = +1
Query: 211 AVKKGSTAVGVRGRDIVVLGVEKKSVA-RLQDERTVRKICALDDNVCMAFAGLTADARIV 387
A K G+T G+ RD V+LG + ++ + +++ KI + + AG+ AD +
Sbjct: 35 ARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMT 94
Query: 388 INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPR 567
A + + H L+ V +TR + RY + G S ++ G D +G P+
Sbjct: 95 TRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLVVGGVDLNG-PQ 148
Query: 568 LYQTDPSGTYHAWKANAIGRGAKSVREFLE----KNYTDEAIETDGLTIKLVIKALLEVV 735
LY+ P G+Y A+G G + LE N T EA + L ++ + +L +
Sbjct: 149 LYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQE--LLVEAITAGILSDL 206
Query: 736 QSGGKNIELAVM 771
SGG N++ V+
Sbjct: 207 GSGG-NVDACVI 217
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,572,917
Number of extensions: 616579
Number of successful extensions: 3313
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3153
Number of HSP's successfully gapped: 10
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230581.1| proteasome (prosome, macropain) subunit, alp... 456 e-129
Alignment gi|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-l... 392 e-109
Alignment gi|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-l... 306 2e-83
Alignment gi|XP_003127922.1| PREDICTED: proteasome subunit alpha type-7-l... 204 7e-53
Alignment gi|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa]. 151 7e-37
Alignment gi|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-l... 135 3e-32
Alignment gi|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-l... 133 1e-31
Alignment gi|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa]. 130 1e-30
Alignment gi|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 i... 121 6e-28
Alignment gi|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 i... 120 1e-27
>ref|NP_001230581.1| proteasome (prosome, macropain) subunit, alpha type [Sus scrofa].
Length = 248
Score = 456 bits (1174), Expect = e-129
Identities = 232/232 (100%), Positives = 232/232 (100%)
Frame = +1
Query: 139 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR 318
MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR
Sbjct: 1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVR 60
Query: 319 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 498
KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
Query: 499 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 678
SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180
Query: 679 IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI
Sbjct: 181 IETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 232
>ref|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-like isoform 1 [Sus
scrofa].
Length = 250
Score = 392 bits (1008), Expect = e-109
Identities = 196/230 (85%), Positives = 214/230 (93%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RG DIVVLGVEKKSVA+LQDERTVRKI
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGVEKKSVAKLQDERTVRKI 64
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
CALDD+VCMAFAGLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65 CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 125 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK+ + +EIE V EI
Sbjct: 185 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEI 234
>ref|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-like isoform 2 [Sus
scrofa].
Length = 212
Score = 306 bits (783), Expect = 2e-83
Identities = 161/230 (70%), Positives = 177/230 (76%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RG
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRG------------------------- 39
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
LTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 40 -------------LTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 86
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRPFGISALIVGFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 87 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 146
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK+ + +EIE V EI
Sbjct: 147 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEI 196
>ref|XP_003127922.1| PREDICTED: proteasome subunit alpha type-7-like isoform 3 [Sus
scrofa].
Length = 190
Score = 204 bits (519), Expect = 7e-53
Identities = 122/230 (53%), Positives = 141/230 (61%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RG DIVVLGV ++++V K+
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGV---------EKKSVAKL 55
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D TV R I +L
Sbjct: 56 ------------------------------------QDERTV----RKICALDDH----- 70
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
+ GFD DG PRLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI
Sbjct: 71 ------VCMAFAGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 124
Query: 685 TDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
D IKL I+ALLEVVQSGGKNIELA++RR+QPLK+ + +EIE V EI
Sbjct: 125 NDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEI 174
>ref|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa].
Length = 241
Score = 151 bits (381), Expect = 7e-37
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 5/235 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 669
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186
Query: 670 DEAIETDGLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEI 834
+ + L+I + + NIELA ++ Q + EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>ref|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-like [Sus scrofa].
Length = 188
Score = 135 bits (341), Expect = 3e-32
Identities = 71/179 (39%), Positives = 113/179 (63%), Gaps = 5/179 (2%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YDR + FSP+G LFQVEYA EA+K GSTA+G++ + V L VEK+ + L + ++ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D ++ A +GL ADA+ +I++ARVE Q+H T + +TVE +T+ +++L ++ + +
Sbjct: 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127
Query: 505 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY 666
RPFG++ L G D G P+L+ DPSGT+ A AIG ++ + L++ Y
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
>ref|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-like [Sus scrofa].
Length = 263
Score = 133 bits (335), Expect = 1e-31
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +1
Query: 145 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 124 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182
Query: 685 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYV 825
+K ++AL E + + KN+ + ++ +D I + +++ ++
Sbjct: 183 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233
>ref|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa].
Length = 246
Score = 130 bits (327), Expect = 1e-30
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 4/233 (1%)
Frame = +1
Query: 148 DRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 324
DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV +
Sbjct: 10 DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHL 69
Query: 325 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 504
+ +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 70 FKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129
Query: 505 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 684
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 130 EMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW 189
Query: 685 TDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 834
T T++ I L V+ K IE+ V+ + P +I EI+ ++ +
Sbjct: 190 TFEQTVETAITCLFTVLSIDFKPSEIEVGVVTVENPKFRIFTEAEIDAHLVAL 242
>ref|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 isoform 1 [Sus scrofa].
Length = 255
Score = 121 bits (304), Expect = 6e-28
Identities = 67/200 (33%), Positives = 116/200 (58%)
Frame = +1
Query: 136 GMSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV 315
G YD + + FSPDG +FQVEYA +AV+ STA+G+R +D VV GVEK +++L +E +
Sbjct: 5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 64
Query: 316 RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 495
+++ +D +V MA AGL ADAR + + AR E + R + ++++ +A YT
Sbjct: 65 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT 124
Query: 496 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 675
+ RPFG S ++ + + +LY DPSG + + AIG+ ++ + +EK
Sbjct: 125 LYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK----- 179
Query: 676 AIETDGLTIKLVIKALLEVV 735
++ +T + V+K + +++
Sbjct: 180 -LQMKEMTCRDVVKEVAKII 198
>ref|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 isoform 2 [Sus scrofa].
Length = 237
Score = 120 bits (302), Expect = 1e-27
Identities = 67/213 (31%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Frame = +1
Query: 208 EAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RKICALDDNVCMAFAGLTADARI 384
EA+ T +G+ D V+L E++++ +L DE KI L++++ + AG+T+DA +
Sbjct: 2 EAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 61
Query: 385 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP 564
+ N R+ Q + L ++P+ E + + +KQ YTQ G+RPFG+S L +G+D
Sbjct: 62 LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF 121
Query: 565 RLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDGLTIKLVIKAL---LEVV 735
+LYQ+DPSG Y WKA IG + + L+++Y E T + L IK L ++V
Sbjct: 122 QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGEMTLKSALALAIKVLNKTMDVS 180
Query: 736 QSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 825
+ + +E+A + R+ +++L +E+E+ +
Sbjct: 181 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 213
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,440,082
Number of extensions: 735963
Number of successful extensions: 2981
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2806
Number of HSP's successfully gapped: 16
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002495
(1070 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 256 2e-65
Sscrofa_Chr18 72 7e-10
>Sscrofa_Chr17
|| Length = 69701581
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 234 ggttggcgtccgcggaagggacatcgtcgtcctcggcgtggagaagaagtcggtggccag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69076205 ggttggcgtccgcggaagggacatcgtcgtcctcggcgtggagaagaagtcggtggccag 69076264
Query: 294 gctgcaggacgagcggaccgtgcggaagatctgcgccctggacgacaacgtctgcatggc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69076265 gctgcaggacgagcggaccgtgcggaagatctgcgccctggacgacaacgtctgcatggc 69076324
Query: 354 gttcgcggg 362
|||||||||
Sbjct: 69076325 gttcgcggg 69076333
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 361 ggcctcaccgcggacgcacggatagtcatcaacagggcgcgggtggagtgccagagccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69076893 ggcctcaccgcggacgcacggatagtcatcaacagggcgcgggtggagtgccagagccac 69076952
Query: 421 cggctgaccgtggaggacccggtcactgtggagtacatcacccgctacatcgccagcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69076953 cggctgaccgtggaggacccggtcactgtggagtacatcacccgctacatcgccagcctg 69077012
Query: 481 aagcag 486
||||||
Sbjct: 69077013 aagcag 69077018
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 485 agcgctacacacagagcaacggtcgcaggccctttgggatctccgccctcatcgtgggtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69077571 agcgctacacacagagcaacggtcgcaggccctttgggatctccgccctcatcgtgggtt 69077630
Query: 545 ttgactttgacggcacccccagactctaccagacggacccctcagggacctaccacgcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69077631 ttgactttgacggcacccccagactctaccagacggacccctcagggacctaccacgcct 69077690
Query: 605 ggaagg 610
||||||
Sbjct: 69077691 ggaagg 69077696
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 608 aggccaatgctataggccggggcgccaaatctgtgcgtgagtttctggagaagaattaca 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69078067 aggccaatgctataggccggggcgccaaatctgtgcgtgagtttctggagaagaattaca 69078126
Query: 668 ccgacgaagccattgaaacggacggtctgactattaagctggttatcaaggccctgctgg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69078127 ccgacgaagccattgaaacggacggtctgactattaagctggttatcaaggccctgctgg 69078186
Query: 728 aagt 731
||||
Sbjct: 69078187 aagt 69078190
Score = 246 bits (124), Expect = 2e-62
Identities = 136/140 (97%)
Strand = Plus / Plus
Query: 878 cgtcgtgatgaatggaagctcgctcgcagtgatttttaaatttacatcatgggcgattct 937
||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 69079389 cgtcgggatgaatggaagctcgctcgaactgatttttaaatgtacatcatgggcgattct 69079448
Query: 938 cagaatgacacgcaggcgtctcccctcccgtcttactgtccacgcgtgccctacaataaa 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69079449 cagaatgacacgcaggcgtctcccctcccgtcttactgtccacgcgtgccctacaataaa 69079508
Query: 998 cctgcacgtttttaaccttt 1017
||||||||||||||||||||
Sbjct: 69079509 cctgcacgtttttaaccttt 69079528
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 730 gtggtgcagtcaggcggcaaaaacattgaacttgctgtcatgcggcgagatcagcccctc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69078551 gtggtgcagtcaggcggcaaaaacattgaacttgctgtcatgcggcgagatcagcccctc 69078610
Query: 790 aag 792
|||
Sbjct: 69078611 aag 69078613
>Sscrofa_Chr18
|| Length = 61220071
Score = 71.9 bits (36), Expect = 7e-10
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 704 agctggttatcaaggccctgctggaagtggtgcagtcaggcggcaaaaacattgaacttg 763
||||| |||||||||| || ||||||||| | ||||||||| |||||| || ||||||
Sbjct: 29981391 agctgattatcaaggcacttctggaagtgattcagtcaggcagcaaaatcactgaactca 29981332
Query: 764 ctgtca-tgcggcgagatcagcccctcaagattttaaatcctgaggaaattgagaagtac 822
|||||| || || |||||| | | ||||||||||||||||||| ||||| || | |||
Sbjct: 29981331 ctgtcaatgagggcagatcaactcttcaagattttaaatcctgaagaaatcgaaagatac 29981272
Query: 823 gttgctga 830
||||||||
Sbjct: 29981271 gttgctga 29981264
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,658,156
Number of extensions: 71
Number of successful extensions: 71
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 7
Length of query: 1070
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1049
Effective length of database: 2,808,413,156
Effective search space: 2946025400644
Effective search space used: 2946025400644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)