Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075903.1| CD27 antigen [Bos taurus]. 342 3e-94
Alignment gi|NP_001137549.1| tumor necrosis factor receptor superfamily m... 67 2e-11
Alignment gi|NP_001099081.1| tumor necrosis factor receptor superfamily m... 67 3e-11
Alignment gi|NP_777087.1| tumor necrosis factor receptor superfamily memb... 66 4e-11
Alignment gi|NP_001096698.1| tumor necrosis factor receptor superfamily m... 54 2e-07
Alignment gi|NP_001092513.1| tumor necrosis factor receptor superfamily m... 54 3e-07
Alignment gi|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-l... 51 2e-06
Alignment gi|NP_777099.1| tumor necrosis factor receptor superfamily memb... 50 4e-06
>ref|NP_001075903.1| CD27 antigen [Bos taurus].
Length = 249
Score = 342 bits (877), Expect = 3e-94
Identities = 160/249 (64%), Positives = 182/249 (73%), Gaps = 38/249 (15%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 397
MAR P CWLWVLGTLAGLSATP P+SCPEKHYWA+G CCQMC+PGTFLVKDC+QH +AA
Sbjct: 1 MARLPPCWLWVLGTLAGLSATPGPKSCPEKHYWAQGGWCCQMCEPGTFLVKDCEQHREAA 60
Query: 398 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 577
+C+PC GVSF PD+HSRPHCESCRHCNSGL ++NCTLTAN++CACPEG QCRDK+C EC
Sbjct: 61 QCNPCTPGVSFMPDHHSRPHCESCRHCNSGLLIRNCTLTANSECACPEGQQCRDKDCMEC 120
Query: 578 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTIST------------- 718
DGPAQ PGPHPQPSH PYAE I E+RT R+TQTLA+ +P PT+ST
Sbjct: 121 DGPAQAPGPHPQPSHLPYAEEIAESRTDRHTQTLANSRWLPAPTLSTHWSPQRSLCSANC 180
Query: 719 ----------YLSYT---------------GECPVAPAEPCPYSYPREEEGSAIPIQEDY 823
+L++T GE PVAPAEPCPY+ P EEEGSAIPIQEDY
Sbjct: 181 IRIFVLLSGMFLAFTIVGALFLHQQRKLNAGESPVAPAEPCPYTCPSEEEGSAIPIQEDY 240
Query: 824 RNQSSLPTS 850
R PTS
Sbjct: 241 RKPE--PTS 247
>ref|NP_001137549.1| tumor necrosis factor receptor superfamily member 25 [Bos taurus].
Length = 418
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Frame = +2
Query: 209 AGAMARSPLCWLWVLGTLAGLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCDQH 385
A A A L +L +LG A +TP+P+ C G CC+ C G +L C +
Sbjct: 11 AAAAAAVALLFLLLLGARA---STPSPRCDCGHSFPKRSGLGCCKGCPAGHYLKAPCTKP 67
Query: 386 GKAARCDPCKQGVSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW--- 547
AA C PC QG + + H C C+ C+ + ++NC+ A+ C C GW
Sbjct: 68 CGAATCLPCPQGTFLARENHYETRCARCQACDELAPQMALRNCSAVADTHCGCRPGWFMD 127
Query: 548 ----QCRD------KECTEC 577
QCR + CT+C
Sbjct: 128 CMVSQCRHGSPFRCRPCTDC 147
>ref|NP_001099081.1| tumor necrosis factor receptor superfamily member 5 precursor [Bos
taurus].
Length = 280
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 218 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 394
M R PL C W L + + PA +C EK Y LCC +C PG LV DC + K
Sbjct: 1 MVRLPLQCLFWGF-FLTAVHSEPAT-ACGEKQYPVNS-LCCDLCPPGQKLVNDCTEVSK- 56
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCRHCNS--GLFVQN-CTLTANAKCACPEGWQCRDKE 565
C C +G F ++ +C R+CN GL +Q+ TL + C C EG C
Sbjct: 57 TECQSCGKG-EFLSTWNREKYCHEHRYCNPNLGLRIQSEGTLNTDTTCVCVEGQHCTSHT 115
Query: 566 CTEC 577
C C
Sbjct: 116 CESC 119
>ref|NP_777087.1| tumor necrosis factor receptor superfamily member 6 precursor [Bos
taurus].
Length = 323
Score = 66.2 bits (160), Expect = 4e-11
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +2
Query: 293 SCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCR 472
SC E Y + CCQ C PG DC + G C C +G ++ H C C
Sbjct: 44 SCQEGLY-REHQFCCQPCPPGKRKNGDCKRDGDTPECVLCSEGNEYTDKSHHSDKCIRCS 102
Query: 473 HCNS--GLFV-QNCTLTANAKCACPEGWQCRDKECTECD 580
C+ GL V QNCT T N KC C + C C C+
Sbjct: 103 ICDEEHGLEVEQNCTRTRNTKCRCKSNFFCNSSPCEHCN 141
>ref|NP_001096698.1| tumor necrosis factor receptor superfamily member 3 [Bos taurus].
Length = 428
Score = 53.9 bits (128), Expect = 2e-07
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +2
Query: 266 GLSATPAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSP 436
GL QSC ++ +Y ++ LCC C PGT + C + C C + S++
Sbjct: 40 GLPYHTENQSCGDQEKEYYESKLRLCCSRCPPGTHISTKCSRRQNTV-CATCPE-KSYNE 97
Query: 437 DYHSRPHCESCRHCNSGL-FVQ--NCTLTANAKCACPEGWQC--RDKECTECDGPAQTP 598
++ C+ CR C+ L FV+ CT A+C C G C + EC C+ + P
Sbjct: 98 HWNHLSFCQLCRPCDKMLGFVELTPCTSNRKAQCHCQPGMYCVFWNSECEHCEPLSDCP 156
>ref|NP_001092513.1| tumor necrosis factor receptor superfamily member 4 [Bos taurus].
Length = 278
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Frame = +2
Query: 224 RSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARC 403
R+P L +LG + G +A P C Y G CC+ C PG + C+ H + C
Sbjct: 9 RAPGSALLLLGLVLGAAAQP---HCTGDTY-PSGNRCCKECPPGYGMESRCN-HNQDTVC 63
Query: 404 DPCKQGV-SFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK------ 562
PCK G + + +Y C C + Q CT T + C C G Q +D
Sbjct: 64 SPCKPGYYNEAVNYEPCKPCTQCSQRSGSEPKQRCTPTRDTVCGCRPGSQPQDSYGYKRG 123
Query: 563 -ECTECDGPAQTPG 601
+C C +PG
Sbjct: 124 VDCAPCPPGHFSPG 137
>ref|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-like [Bos taurus].
Length = 297
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Frame = +2
Query: 296 CPEKHYWARGELC--CQMCQPGTFLVKDCDQ-HGKAARCDPCKQGVSFSPDYHSRPHCES 466
C E YW + C CQ+C PG L KDC G A C C S H R C++
Sbjct: 3 CQENEYWDQWGRCVTCQLCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR--CQT 60
Query: 467 CRHCNSGLFVQ--NCTLTANAKC--ACPEGWQ------CRDKECTECDGPAQTP 598
C C +Q NCT T+NA C P +Q +D+EC C QTP
Sbjct: 61 CITCAVINRIQQANCTATSNAICGNCLPRFYQKTRIGGLQDQECIPC--TKQTP 112
>ref|NP_777099.1| tumor necrosis factor receptor superfamily member 1A precursor [Bos
taurus].
Length = 471
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Frame = +2
Query: 296 CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 469
CP+ Y +CC C GT+L DC G+ C C G + + H R C SC
Sbjct: 44 CPQGKYNHPQNSTICCTKCHKGTYLYNDCPGPGRDTDCRVCAPGTYTALENHLR-RCLSC 102
Query: 470 RHCNSGLF---VQNCTLTANAKCAC-----PEGWQCRDKECTEC 577
C +F + C + + C C E W C C
Sbjct: 103 SRCRDEMFQVEISPCVVDRDTVCGCRKNQYREYWGETGFRCLNC 146
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,786,833
Number of extensions: 1599802
Number of successful extensions: 9896
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9699
Number of HSP's successfully gapped: 9
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854464.1| PREDICTED: similar to Tumor necrosis factor rec... 293 2e-79
Alignment gi|XP_546752.2| PREDICTED: similar to Tumor necrosis factor rec... 63 5e-10
Alignment gi|NP_001002982.1| tumor necrosis factor receptor superfamily m... 61 1e-09
Alignment gi|XP_543595.2| PREDICTED: similar to Tumor necrosis factor rec... 60 4e-09
Alignment gi|XP_549666.2| PREDICTED: similar to Tumor necrosis factor rec... 59 7e-09
Alignment gi|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor... 54 3e-07
Alignment gi|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor... 54 3e-07
Alignment gi|XP_854474.1| PREDICTED: similar to Tumor necrosis factor rec... 49 9e-06
Alignment gi|XP_544562.2| PREDICTED: similar to Tumor necrosis factor rec... 49 9e-06
>ref|XP_854464.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 7 precursor (CD27L receptor) (T-cell activation
antigen CD27) (T14) [Canis familiaris].
Length = 271
Score = 293 bits (750), Expect = 2e-79
Identities = 142/263 (53%), Positives = 167/263 (63%), Gaps = 60/263 (22%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 397
MAR P CWLW+LGTLAGLSATPAP+ CPEKHY +GE CCQMC+PGTFLVKDC++HG+AA
Sbjct: 1 MARPPPCWLWILGTLAGLSATPAPKRCPEKHYQVQGERCCQMCKPGTFLVKDCERHGEAA 60
Query: 398 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 577
+CDPC G SFSPD+H+R HCESCRHCNSGL ++NCTLTANA+C CP+GW+CRDK+CTEC
Sbjct: 61 QCDPCIPGASFSPDHHARRHCESCRHCNSGLLIRNCTLTANAECDCPKGWKCRDKQCTEC 120
Query: 578 DGPAQ---------TPGPHPQPSHSPYAE-----------AIPEARTSRYTQTLADVGQV 697
D P+ GPH QP+H PYA+ + E T R QTLAD +
Sbjct: 121 DPPSNPLLIPHPSPARGPHLQPTHLPYAKIKFQATLCPVTEMQETSTVRQVQTLADFRWL 180
Query: 698 PVPTIST-----------------------YLSYT-----------------GECPVAPA 757
P P +ST +L++T E PV P
Sbjct: 181 PAPALSTHWPPQRSLCSSDCIRIFVILSGMFLAFTMIGALFFHQQRKYRLNKEEYPVVPV 240
Query: 758 EPCPYSYPREEEGSAIPIQEDYR 826
EPCPYS PREEEG AIPIQEDYR
Sbjct: 241 EPCPYSCPREEEGGAIPIQEDYR 263
>ref|XP_546752.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 25 precursor (WSL-1 protein) (Apoptosis-mediating
receptor DR3) (Apoptosis-mediating receptor TRAMP)
(Death domain receptor 3) (WSL protein) (Apoptosis
inducing receptor AIR) (Apo-3) (Lym... [Canis
familiaris].
Length = 422
Score = 62.8 bits (151), Expect = 5e-10
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +2
Query: 209 AGAMARSPLCWLWVLGTLA--GLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCD 379
A A P + +L L G +TPAP+ +C G CC+ C G +L C
Sbjct: 10 AAVAAVMPFLQVLLLALLGAQGQHSTPAPRCNCAYNFQKRNGLFCCKGCPAGHYLKGPCL 69
Query: 380 QHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW- 547
+ A C PC G + + H C C+ C+ S + ++NC++ A+ C C GW
Sbjct: 70 KPCGPAICLPCPWGTFLARENHHETRCTRCQACDEEVSQVALKNCSMVADTHCGCEPGWF 129
Query: 548 -QCRDKEC 568
+C K C
Sbjct: 130 LECLVKPC 137
>ref|NP_001002982.1| tumor necrosis factor receptor superfamily member 5 precursor
[Canis lupus familiaris].
Length = 274
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 236 CWLWVLGTLAGLSATPAPQS-CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 412
C W G+L + P P++ C EK Y + CC MC PG LV DC H C C
Sbjct: 8 CLFW--GSLL-TTVYPEPRTACREKQYLVDSQ-CCNMCPPGEKLVNDC-LHTIDTECTRC 62
Query: 413 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 577
+ G F +++ HC ++C N GL V+ T + C C EG C + C C
Sbjct: 63 QTG-EFLDTWNAERHCHQHKYCDPNLGLHVEKEGTSETDTTCTCDEGLHCTNAACESC 119
>ref|XP_543595.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 6 precursor (FASL receptor) (Apoptosis-mediating
surface antigen FAS) (Apo-1 antigen) (CD95 antigen)
[Canis familiaris].
Length = 571
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +2
Query: 314 WARG------ELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 475
W RG L ++ + GT DC + + C PC++G ++ H P C C
Sbjct: 29 WPRGVKAQVTSLSYKVLRSGTRKESDCTSYAGKSHCVPCQEGEEYTDKTHLSPKCRRCGI 88
Query: 476 CNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 580
C+ GL V+ NCT T N KC C + C C C+
Sbjct: 89 CDGEHGLEVERNCTQTRNTKCRCKPNFYCDVSPCEHCN 126
>ref|XP_549666.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 14 precursor (Herpesvirus entry mediator A)
(Tumor necrosis factor receptor-like 2) (TR2) [Canis
familiaris].
Length = 272
Score = 58.9 bits (141), Expect = 7e-09
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Frame = +2
Query: 215 AMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 394
A A S +L +LG+L AT AP C E+ Y E CC C PG + VK+
Sbjct: 18 ADALSQALYLLLLGSLPWALAT-AP--CKEEEYPVGSE-CCPKCSPG-YRVKEACGELTG 72
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFV---QNCTLTANAKCACPEGWQC---R 556
C PC G +++ + C CR C+ + + Q C+ T N CAC +G C
Sbjct: 73 TVCAPCDPG-TYTAHLNGLSECLQCRMCDPAMALVTRQKCSRTENTVCACAQGHFCISEN 131
Query: 557 DKECTEC 577
+ +C EC
Sbjct: 132 EDDCVEC 138
>ref|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor isoform 2 [Canis
familiaris].
Length = 267
Score = 53.5 bits (127), Expect = 3e-07
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Frame = +2
Query: 197 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 340
R WA + +A PL + + G LA A P Q+C ++ +Y + ++CC
Sbjct: 2 RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60
Query: 341 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 511
C PGT + +C + + C C + S++ ++ C+ CR C+ L + CT
Sbjct: 61 RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118
Query: 512 TANAKCACPEGWQC--RDKECTECDGPAQTP 598
+C C G C D EC C+ + P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149
>ref|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor isoform 1 [Canis
familiaris].
Length = 421
Score = 53.5 bits (127), Expect = 3e-07
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Frame = +2
Query: 197 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 340
R WA + +A PL + + G LA A P Q+C ++ +Y + ++CC
Sbjct: 2 RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60
Query: 341 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 511
C PGT + +C + + C C + S++ ++ C+ CR C+ L + CT
Sbjct: 61 RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118
Query: 512 TANAKCACPEGWQC--RDKECTECDGPAQTP 598
+C C G C D EC C+ + P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149
>ref|XP_854474.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 1A precursor (p60) (TNF-R1) (TNF-RI) (p55)
(CD120a) [Canis familiaris].
Length = 452
Score = 48.5 bits (114), Expect = 9e-06
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Frame = +2
Query: 296 CPEKHYWARGE--LCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRP--HCE 463
CP+ Y + +CC C GT+L DC G C C+ G + + H R C
Sbjct: 44 CPQGKYIHPQDDSICCTKCHKGTYLYNDCPGPGLDTDCRECENGTFTASENHLRQCLSCS 103
Query: 464 SCRHCNSGLFVQNCTLTANAKCACPEG-----WQCRDKECTEC 577
CR + + + CT+ + C C + W +C C
Sbjct: 104 KCRKEMNQVEISPCTVYRDTVCGCRKNQYRFYWSETLFQCNNC 146
>ref|XP_544562.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 1B precursor (Tumor necrosis factor receptor 2)
(TNF-R2) (Tumor necrosis factor receptor type II) (p75)
(p80 TNF-alpha receptor) (CD120b) (Etanercept) [Canis
familiaris].
Length = 450
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Frame = +2
Query: 269 LSATPAPQ---SCPEKHYW-ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSP 436
L P P+ SC + Y+ R ++CC MC PG+ C + C C+ +++
Sbjct: 13 LPYVPDPELGSSCQQSEYFDQRTQMCCSMCPPGSHARLFCTKTSNTV-CARCENS-TYTQ 70
Query: 437 DYHSRPHCESC-RHCNSG-LFVQNCTLTANAKCACPEGWQC---RDKECTEC 577
++ P C SC C + + Q CT N C+C GW C R C C
Sbjct: 71 LWNWVPECLSCGSRCGADQVETQACTREQNRICSCKSGWYCTLRRQGGCRLC 122
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,728,424
Number of extensions: 1647556
Number of successful extensions: 10230
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10005
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001233.1| CD27 antigen precursor [Homo sapiens]. 306 1e-83
Alignment gi|NP_690593.1| tumor necrosis factor receptor superfamily memb... 74 3e-13
Alignment gi|NP_001241.1| tumor necrosis factor receptor superfamily memb... 74 3e-13
Alignment gi|NP_690611.1| tumor necrosis factor receptor superfamily memb... 70 4e-12
Alignment gi|NP_690610.1| tumor necrosis factor receptor superfamily memb... 70 4e-12
Alignment gi|NP_000034.1| tumor necrosis factor receptor superfamily memb... 70 4e-12
Alignment gi|NP_001034753.1| tumor necrosis factor receptor superfamily m... 54 2e-07
Alignment gi|NP_683867.1| tumor necrosis factor receptor superfamily memb... 54 2e-07
Alignment gi|NP_683866.1| tumor necrosis factor receptor superfamily memb... 54 2e-07
Alignment gi|NP_003781.1| tumor necrosis factor receptor superfamily memb... 54 2e-07
>ref|NP_001233.1| CD27 antigen precursor [Homo sapiens].
Length = 260
Score = 306 bits (785), Expect = 1e-83
Identities = 149/252 (59%), Positives = 167/252 (66%), Gaps = 49/252 (19%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 397
MAR WL VLGTL GLSATPAP+SCPE+HYWA+G+LCCQMC+PGTFLVKDCDQH KAA
Sbjct: 1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 60
Query: 398 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 577
+CDPC GVSFSPD+H+RPHCESCRHCNSGL V+NCT+TANA+CAC GWQCRDKECTEC
Sbjct: 61 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 120
Query: 578 D---------GPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTIST---- 718
D +Q PHPQP+H PY + EART+ + QTLAD Q+P T+ST
Sbjct: 121 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 180
Query: 719 ------------------------------------YLSYTGECPVAPAEPCPYSYPREE 790
Y S GE PV PAEPC YS PREE
Sbjct: 181 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE 240
Query: 791 EGSAIPIQEDYR 826
EGS IPIQEDYR
Sbjct: 241 EGSTIPIQEDYR 252
>ref|NP_690593.1| tumor necrosis factor receptor superfamily member 5 isoform 2
precursor [Homo sapiens].
Length = 203
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/124 (36%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 218 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 394
M R PL C LW G L P +C EK Y + CC +CQPG LV DC + +
Sbjct: 1 MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 565
C PC + F ++ HC ++C N GL V Q T + C C EGW C +
Sbjct: 57 TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115
Query: 566 CTEC 577
C C
Sbjct: 116 CESC 119
>ref|NP_001241.1| tumor necrosis factor receptor superfamily member 5 isoform 1
precursor [Homo sapiens].
Length = 277
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/124 (36%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 218 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 394
M R PL C LW G L P +C EK Y + CC +CQPG LV DC + +
Sbjct: 1 MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 565
C PC + F ++ HC ++C N GL V Q T + C C EGW C +
Sbjct: 57 TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115
Query: 566 CTEC 577
C C
Sbjct: 116 CESC 119
>ref|NP_690611.1| tumor necrosis factor receptor superfamily member 6 isoform 3
precursor [Homo sapiens].
Length = 220
Score = 69.7 bits (169), Expect = 4e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 323 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 499
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 500 --NCTLTANAKCACPEGWQCRDKECTECD 580
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_690610.1| tumor necrosis factor receptor superfamily member 6 isoform 2
precursor [Homo sapiens].
Length = 314
Score = 69.7 bits (169), Expect = 4e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 323 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 499
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 500 --NCTLTANAKCACPEGWQCRDKECTECD 580
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_000034.1| tumor necrosis factor receptor superfamily member 6 isoform 1
precursor [Homo sapiens].
Length = 335
Score = 69.7 bits (169), Expect = 4e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 323 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 499
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 500 --NCTLTANAKCACPEGWQCRDKECTECD 580
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_001034753.1| tumor necrosis factor receptor superfamily member 25 isoform 12
precursor [Homo sapiens].
Length = 181
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 212 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 391
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 392 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 556
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 557 DKEC 568
+C
Sbjct: 127 VSQC 130
>ref|NP_683867.1| tumor necrosis factor receptor superfamily member 25 isoform 3
precursor [Homo sapiens].
Length = 380
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 212 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 391
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 392 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 556
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 557 DKEC 568
+C
Sbjct: 127 VSQC 130
>ref|NP_683866.1| tumor necrosis factor receptor superfamily member 25 isoform 1
precursor [Homo sapiens].
Length = 426
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 212 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 391
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 392 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 556
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 557 DKEC 568
+C
Sbjct: 127 VSQC 130
>ref|NP_003781.1| tumor necrosis factor receptor superfamily member 25 isoform 2
precursor [Homo sapiens].
Length = 417
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 212 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 391
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 392 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 556
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 557 DKEC 568
+C
Sbjct: 127 VSQC 130
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,823,767
Number of extensions: 1617721
Number of successful extensions: 9646
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9298
Number of HSP's successfully gapped: 19
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028298.1| CD27 antigen isoform a [Mus musculus]. 254 9e-68
Alignment gi|NP_032013.2| tumor necrosis factor receptor superfamily memb... 76 3e-14
Alignment gi|NP_001036029.1| CD27 antigen isoform b [Mus musculus]. 71 1e-12
Alignment gi|NP_733805.1| tumor necrosis factor receptor superfamily memb... 68 1e-11
Alignment gi|NP_733804.1| tumor necrosis factor receptor superfamily memb... 68 1e-11
Alignment gi|NP_733803.2| tumor necrosis factor receptor superfamily memb... 68 1e-11
Alignment gi|NP_035741.2| tumor necrosis factor receptor superfamily memb... 68 1e-11
Alignment gi|NP_035789.1| tumor necrosis factor receptor superfamily memb... 65 1e-10
Alignment gi|NP_034866.1| tumor necrosis factor receptor superfamily memb... 55 1e-07
Alignment gi|NP_076169.2| tumor necrosis factor receptor superfamily memb... 55 1e-07
>ref|NP_001028298.1| CD27 antigen isoform a [Mus musculus].
Length = 250
Score = 254 bits (648), Expect = 9e-68
Identities = 123/242 (50%), Positives = 148/242 (61%), Gaps = 39/242 (16%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 397
MA P WL +LGTL GLSAT AP SCP+KHYW G LCC+MC+PGTF VKDC+Q AA
Sbjct: 1 MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEPGTFFVKDCEQDRTAA 60
Query: 398 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 577
+CDPC G SFSPDYH+RPHCESCRHCNSG ++NCT+TANA+C+C + WQCRD+ECTEC
Sbjct: 61 QCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECSCSKNWQCRDQECTEC 120
Query: 578 DGP---------AQTPGPHPQPSHSPYAEAIPE--------------ARTSRYTQTLADV 688
D P ++TP P P P+H P+ P R+S +D
Sbjct: 121 DPPLNPALTRQPSETPSPQPPPTHLPHGTEKPSWPLHRQLPNSTVYSQRSSHRPLCSSDC 180
Query: 689 GQVPVPTISTYLSYT----------------GECPVAPAEPCPYSYPREEEGSAIPIQED 820
++ V S +L + + P EPCPYS PREEEGSAIPIQED
Sbjct: 181 IRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAVPEEPCPYSCPREEEGSAIPIQED 240
Query: 821 YR 826
YR
Sbjct: 241 YR 242
>ref|NP_032013.2| tumor necrosis factor receptor superfamily member 6 isoform 1
precursor [Mus musculus].
Length = 327
Score = 76.3 bits (186), Expect = 3e-14
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 290 QSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 469
++C E Y G CCQ CQPG V+DC +G C PC +G + H C C
Sbjct: 42 KNCSEGLYQG-GPFCCQPCQPGKKKVEDCKMNGGTPTCAPCTEGKEYMDKNHYADKCRRC 100
Query: 470 RHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 577
C+ GL V+ NCTLT N KC C + C C C
Sbjct: 101 TLCDEEHGLEVETNCTLTQNTKCKCKPDFYCDSPGCEHC 139
>ref|NP_001036029.1| CD27 antigen isoform b [Mus musculus].
Length = 146
Score = 70.9 bits (172), Expect = 1e-12
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQP 352
MA P WL +LGTL GLSAT AP SCP+KHYW G LCC+MC+P
Sbjct: 1 MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEP 45
Score = 53.5 bits (127), Expect = 2e-07
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +2
Query: 752 PAEPCPYSYPREEEGSAIPIQEDYR 826
P EPCPYS PREEEGSAIPIQEDYR
Sbjct: 114 PEEPCPYSCPREEEGSAIPIQEDYR 138
>ref|NP_733805.1| tumor necrosis factor receptor superfamily member 5 isoform 4 [Mus
musculus].
Length = 222
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 233 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 412
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 413 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 577
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_733804.1| tumor necrosis factor receptor superfamily member 5 isoform 2 [Mus
musculus].
Length = 203
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 233 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 412
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 413 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 577
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_733803.2| tumor necrosis factor receptor superfamily member 5 isoform 5 [Mus
musculus].
Length = 260
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 233 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 412
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 413 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 577
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_035741.2| tumor necrosis factor receptor superfamily member 5 isoform 1 [Mus
musculus].
Length = 289
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 233 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 412
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 413 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 577
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_035789.1| tumor necrosis factor receptor superfamily member 4 precursor [Mus
musculus].
Length = 272
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Frame = +2
Query: 242 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 421
L +LG G++A +C KH + G CC+ CQPG +V CD H + C PC+ G
Sbjct: 11 LLLLGLTLGVTARRL--NCV-KHTYPSGHKCCRECQPGHGMVSRCD-HTRDTLCHPCETG 66
Query: 422 -VSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK-------ECTEC 577
+ + +Y + C C H + QNCT T + C C G Q R +C C
Sbjct: 67 FYNEAVNYDTCKQCTQCNHRSGSELKQNCTPTQDTVCRCRPGTQPRQDSGYKLGVDCVPC 126
Query: 578 DGPAQTPG 601
+PG
Sbjct: 127 PPGHFSPG 134
>ref|NP_034866.1| tumor necrosis factor receptor superfamily member 3 precursor [Mus
musculus].
Length = 415
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Frame = +2
Query: 221 ARSP--LCWLWVLGTLAGLSATPAPQSCP-------------EKHYWARGELCCQMCQPG 355
A SP L W +L L+GL PQ P +++Y ++CC C PG
Sbjct: 6 ASSPCGLAWGPLLLGLSGLLVASQPQLVPPYRIENQTCWDQDKEYYEPMHDVCCSRCPPG 65
Query: 356 TFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGL---FVQNCTLTANAK 526
F+ C + + C C S++ ++ C+ CR C+ L V CT A+
Sbjct: 66 EFVFAVCSR-SQDTVCKTCPHN-SYNEHWNHLSTCQLCRPCDIVLGFEEVAPCTSDRKAE 123
Query: 527 CACPEGWQC--RDKECTECD 580
C C G C D EC C+
Sbjct: 124 CRCQPGMSCVYLDNECVHCE 143
>ref|NP_076169.2| tumor necrosis factor receptor superfamily member 22 [Mus
musculus].
Length = 180
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Frame = +2
Query: 296 CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 475
CP YW++ ++CC+ C GTF+ C+ +C+ C G +F+ + C C
Sbjct: 48 CPAGEYWSK-DVCCKNCSAGTFVKAPCEIPHTQGQCEKCHPG-TFTEKDNYLDACILCST 105
Query: 476 CNSGL-FVQNCTLTANAKCACPEGWQCRD-------KECTEC 577
C+ V +C+ T++ KC C G D + CT+C
Sbjct: 106 CDKDQEMVADCSATSDRKCQCRTGLYYYDPKFPESCRPCTKC 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,204,715
Number of extensions: 1323085
Number of successful extensions: 7963
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 7667
Number of HSP's successfully gapped: 20
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa]. 434 e-122
Alignment gi|NP_999004.1| tumor necrosis factor receptor superfamily memb... 80 1e-15
Alignment gi|XP_003127580.1| PREDICTED: tumor necrosis factor receptor su... 62 6e-10
Alignment gi|NP_999359.1| tumor necrosis factor receptor superfamily memb... 61 1e-09
Alignment gi|XP_003126595.1| PREDICTED: tumor necrosis factor receptor su... 56 3e-08
Alignment gi|XP_003131613.2| PREDICTED: tumor necrosis factor receptor su... 49 3e-06
Alignment gi|NP_001090910.2| tumor necrosis factor receptor superfamily m... 49 4e-06
Alignment gi|XP_003127545.1| PREDICTED: tumor necrosis factor receptor su... 49 4e-06
>ref|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa].
Length = 249
Score = 434 bits (1115), Expect = e-122
Identities = 202/241 (83%), Positives = 202/241 (83%), Gaps = 38/241 (15%)
Frame = +2
Query: 218 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 397
MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA
Sbjct: 1 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 60
Query: 398 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 577
RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC
Sbjct: 61 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 120
Query: 578 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLS---------- 727
DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLS
Sbjct: 121 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR 180
Query: 728 ----------------------------YTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 823
TGECPVAPAEPCPYSYPREEEGSAIPIQEDY
Sbjct: 181 ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 240
Query: 824 R 826
R
Sbjct: 241 R 241
>ref|NP_999004.1| tumor necrosis factor receptor superfamily member 6 precursor [Sus
scrofa].
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 269 LSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHS 448
L+ T CPE + G+ CCQ C PG DC G A +C PC +G ++ H
Sbjct: 37 LNITKRESECPEGQH-REGQFCCQPCPPGKRKHADCTSPGGAPQCVPCSEGEDYTDKNHH 95
Query: 449 RPHCESCRHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 580
C CR C+ GL V+ NCT T N KC C + C +C C+
Sbjct: 96 SSKCRRCRVCDGEHGLEVEKNCTRTQNTKCRCKPNFFCHTSQCEHCN 142
>ref|XP_003127580.1| PREDICTED: tumor necrosis factor receptor superfamily member
25-like [Sus scrofa].
Length = 415
Score = 61.6 bits (148), Expect = 6e-10
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Frame = +2
Query: 242 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 421
L +L G +TP+ + G +CC+ C G +L C + AA C PC QG
Sbjct: 17 LLLLPGARGQGSTPSAHCDCVPNQKRNGLVCCRGCPAGHYLKAPCTKPCGAATCLPCPQG 76
Query: 422 VSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW-------QC------ 553
+ + H C C+ C+ + ++NC+ A+ C C GW QC
Sbjct: 77 TFLAWENHHETRCARCQACDEQAPQVALKNCSAVADTHCGCRPGWFMECVVSQCLLGSPF 136
Query: 554 RDKECTEC 577
R + CT+C
Sbjct: 137 RCRRCTDC 144
>ref|NP_999359.1| tumor necrosis factor receptor superfamily member 5 precursor [Sus
scrofa].
Length = 278
Score = 60.8 bits (146), Expect = 1e-09
Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Frame = +2
Query: 218 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 394
M R PL C LW G P SC E Y CC +C PG LV C + +
Sbjct: 1 MVRLPLKCLLW--GCFLTAVHPEPPTSCKENQYPTNSR-CCNLCPPGQKLVNHCTEVTE- 56
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKE 565
C PC F ++ HC ++C N GL VQ T + C C EG C +
Sbjct: 57 TECLPCSSS-EFLATWNREKHCHQHKYCDPNLGLQVQREGTSKTDTTCVCSEGHHCTNSA 115
Query: 566 CTEC 577
C C
Sbjct: 116 CESC 119
>ref|XP_003126595.1| PREDICTED: tumor necrosis factor receptor superfamily member 3-like
[Sus scrofa].
Length = 421
Score = 56.2 bits (134), Expect = 3e-08
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Frame = +2
Query: 281 PAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSR 451
P Q+C ++ +Y + +CC C PGT + +C H + C C + S++ ++
Sbjct: 38 PENQTCQDQKREYYEPKHHVCCSRCPPGTHVSAEC-SHDQNTACATCPEN-SYNEHWNHL 95
Query: 452 PHCESCRHCNSGL---FVQNCTLTANAKCACPEGWQC--RDKECTECD 580
C+ CR C+ L V CT A+C C G C D EC C+
Sbjct: 96 SICQLCRPCDQMLGFMEVTPCTSKHKAQCRCQPGMFCVFWDSECVHCE 143
>ref|XP_003131613.2| PREDICTED: tumor necrosis factor receptor superfamily member
16-like [Sus scrofa].
Length = 212
Score = 49.3 bits (116), Expect = 3e-06
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Frame = +2
Query: 242 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 421
L +L L G+S A ++CP Y GE CC+ C G + + C + C+PC
Sbjct: 15 LLLLLLLQGVSLGGAKETCPTGMYTHSGE-CCKACNLGEGVAQPCGANQTV--CEPCLDS 71
Query: 422 VSFSPDYHSRPHCESCRHCNSGLFVQN--CTLTANAKCACPEGW---------------- 547
V+FS + C+ C C GL + C +A C C G+
Sbjct: 72 VTFSDVVSATEPCKPCTEC-VGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE 130
Query: 548 -------QCRDKE---CTEC-DGPAQTPGPHPQP 616
C+DK+ C EC DG H P
Sbjct: 131 AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDP 164
>ref|NP_001090910.2| tumor necrosis factor receptor superfamily member 1B [Sus scrofa].
Length = 461
Score = 48.9 bits (115), Expect = 4e-06
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Frame = +2
Query: 242 LWVLGTLAGLSATPAP------QSC--PEKHYW-ARGELCCQMCQPGTFLVKDCDQHGKA 394
LW G A P SC P K Y+ + ++CC C PG + C++
Sbjct: 16 LWAAGRAVPSQAVFMPYAPELGSSCRLPLKEYYDTKAQMCCSKCPPGFRIQTSCNRTSDT 75
Query: 395 ARCDPCKQGVSFSPDYHSRPHCESCR-HCNSG-LFVQNCTLTANAKCACPEGWQC---RD 559
C C+ +++ ++S C SC C+S + Q CT N C+C GW C R
Sbjct: 76 V-CGSCESS-TYTQLWNSVSACFSCNSRCSSDQVETQACTPKQNRICSCKPGWYCTLGRQ 133
Query: 560 KECTEC 577
+ C C
Sbjct: 134 EGCRLC 139
>ref|XP_003127545.1| PREDICTED: tumor necrosis factor receptor superfamily member 4-like
[Sus scrofa].
Length = 278
Score = 48.9 bits (115), Expect = 4e-06
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Frame = +2
Query: 323 GELCCQMCQPGTFLVKDCD--QHGKAARCDP--CKQGVSFSPDYHSRPHCESCRHCN--S 484
G CC+ CQPG + + C Q + +RC P + V++ P C+ C CN S
Sbjct: 38 GRRCCKECQPGYGMERRCTDTQETECSRCKPGFYNEAVNYEP-------CKPCTQCNQRS 90
Query: 485 GLFV-QNCTLTANAKCACPEGWQCRD-------KECTECDGPAQTPG 601
G V Q CT T + C C G Q +D +C C +PG
Sbjct: 91 GSEVKQRCTNTTDTVCGCRPGTQPQDGFGYKRGVDCVRCPPGHFSPG 137
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,671,200
Number of extensions: 1044116
Number of successful extensions: 6329
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6229
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002497
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 702 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 702 bits (354), Expect = 0.0
Identities = 354/354 (100%)
Strand = Plus / Minus
Query: 1 ggggtgggggcagtggcagtgacagtgactgcatgagtgagaaacagccacagtagcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663973 ggggtgggggcagtggcagtgacagtgactgcatgagtgagaaacagccacagtagcgct 66663914
Query: 61 tcaacggcatcagaggtcggcctgccacctgaggggggcaactcccagaagacctgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663913 tcaacggcatcagaggtcggcctgccacctgaggggggcaactcccagaagacctgcctg 66663854
Query: 121 ggaggtgcaaagaagagacaccagcacccagctggggaggtgccagctcccccaaggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663853 ggaggtgcaaagaagagacaccagcacccagctggggaggtgccagctcccccaaggcca 66663794
Query: 181 cagctggggcacaggaagaacttcctgggcaggggccatggcccggtcacctctctgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663793 cagctggggcacaggaagaacttcctgggcaggggccatggcccggtcacctctctgctg 66663734
Query: 241 gctgtgggttctgggtaccctggcagggctctccgctaccccagccccccagagctgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663733 gctgtgggttctgggtaccctggcagggctctccgctaccccagccccccagagctgtcc 66663674
Query: 301 agagaagcactactgggctcggggcgaactgtgctgccagatgtgccagccagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663673 agagaagcactactgggctcggggcgaactgtgctgccagatgtgccagccagg 66663620
Score = 385 bits (194), Expect = e-104
Identities = 233/242 (96%), Gaps = 3/242 (1%)
Strand = Plus / Minus
Query: 729 acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659243 acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 66659184
Query: 789 aggagggcagcgccatccccattcaggaagattaccg-aaaccagagctcgcttcctacc 847
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 66659183 aggagggcagcgccatccccattcaggaagattaccgaaaaccagagctcgcttcctacc 66659124
Query: 848 tctgagccagcgctccgcggaggagaaagcatcactgccaatcagcccgagctt-catcc 906
||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 66659123 tctgagccagcgctccgcggaggagaagccatcactgccatcaagcccgagcttccatcc 66659064
Query: 907 cacctcacccgacat-cagggggatcgagagctggcaccccccatttcagcactacccct 965
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 66659063 cacctcacccgacatccagggggatcgagagctggcacccccaatttcagcactacccct 66659004
Query: 966 tc 967
||
Sbjct: 66659003 tc 66659002
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 485 ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660294 ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 66660235
Query: 545 tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660234 tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 66660175
Query: 605 cacccacaaccctcccactcaccttatgctgaag 638
||||||||||||||||||||||||||||||||||
Sbjct: 66660174 cacccacaaccctcccactcaccttatgctgaag 66660141
Score = 264 bits (133), Expect = 8e-68
Identities = 136/137 (99%)
Strand = Plus / Minus
Query: 351 caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663442 caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 66663383
Query: 411 gtaaacagggggtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 470
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663382 gtaaacagggagtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 66663323
Query: 471 ggcactgtaactctggt 487
|||||||||||||||||
Sbjct: 66663322 ggcactgtaactctggt 66663306
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 637 agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659942 agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 66659883
Query: 697 tcctgtcccaactatctccacctacttgtctt 728
||||||||||||||||||||||||||||||||
Sbjct: 66659882 tcctgtcccaactatctccacctacttgtctt 66659851
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,810,180
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 5
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)