Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075903.1| CD27 antigen [Bos taurus]. 418 e-117
Alignment gi|NP_001137549.1| tumor necrosis factor receptor superfamily m... 71 2e-12
Alignment gi|NP_001099081.1| tumor necrosis factor receptor superfamily m... 67 5e-11
Alignment gi|NP_777087.1| tumor necrosis factor receptor superfamily memb... 66 6e-11
Alignment gi|NP_001096698.1| tumor necrosis factor receptor superfamily m... 54 3e-07
Alignment gi|NP_001092513.1| tumor necrosis factor receptor superfamily m... 54 4e-07
Alignment gi|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-l... 51 3e-06
Alignment gi|NP_777099.1| tumor necrosis factor receptor superfamily memb... 50 6e-06
>ref|NP_001075903.1| CD27 antigen [Bos taurus].
Length = 249
Score = 418 bits (1075), Expect = e-117
Identities = 190/250 (76%), Positives = 215/250 (86%), Gaps = 2/250 (0%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
MAR P CWLWVLGTLAGLSATP P+SCPEKHYWA+G CCQMC+PGTFLVKDC+QH +AA
Sbjct: 1 MARLPPCWLWVLGTLAGLSATPGPKSCPEKHYWAQGGWCCQMCEPGTFLVKDCEQHREAA 60
Query: 560 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
+C+PC GVSF PD+HSRPHCESCRHCNSGL ++NCTLTAN++CACPEG QCRDK+C EC
Sbjct: 61 QCNPCTPGVSFMPDHHSRPHCESCRHCNSGLLIRNCTLTANSECACPEGQQCRDKDCMEC 120
Query: 740 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQR--CSSEC 913
DGPAQ PGPHPQPSH PYAE I E+RT R+TQTLA+ +P PT+ST+ S QR CS+ C
Sbjct: 121 DGPAQAPGPHPQPSHLPYAEEIAESRTDRHTQTLANSRWLPAPTLSTHWSPQRSLCSANC 180
Query: 914 IRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQE 1093
IRI V+LSG+FLAFT+VGALFL+QQRK LN GE PVAPAEPCPY+ P EEEGSAIPIQE
Sbjct: 181 IRIFVLLSGMFLAFTIVGALFLHQQRK--LNAGESPVAPAEPCPYTCPSEEEGSAIPIQE 238
Query: 1094 DYRKPELASY 1123
DYRKPE SY
Sbjct: 239 DYRKPEPTSY 248
>ref|NP_001137549.1| tumor necrosis factor receptor superfamily member 25 [Bos taurus].
Length = 418
Score = 70.9 bits (172), Expect = 2e-12
Identities = 77/334 (23%), Positives = 116/334 (34%), Gaps = 22/334 (6%)
Frame = +2
Query: 371 AGAMARSPLCWLWVLGTLAGLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCDQH 547
A A A L +L +LG A +TP+P+ C G CC+ C G +L C +
Sbjct: 11 AAAAAAVALLFLLLLGARA---STPSPRCDCGHSFPKRSGLGCCKGCPAGHYLKAPCTKP 67
Query: 548 GKAARCDPCKQGVSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW--- 709
AA C PC QG + + H C C+ C+ + ++NC+ A+ C C GW
Sbjct: 68 CGAATCLPCPQGTFLARENHYETRCARCQACDELAPQMALRNCSAVADTHCGCRPGWFMD 127
Query: 710 ----QCRD------KECTECDG---PAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADV 850
QCR + CT+C QTP E S + + +
Sbjct: 128 CMVSQCRHGSPFRCRPCTDCGALHRHTQTPCSSRDTHCGTCLPGFYEYDKSCVSCPTSTL 187
Query: 851 GQVPVPTISTYLSSQRCSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAP 1030
G P P ++ C + + +L + ++GA Y +
Sbjct: 188 GSCPEPCVAV------CGWRQMFWVQMLVAGLVVPLLLGATLTYTYHR------------ 229
Query: 1031 AEPCPYSYPREEEGSAI--PIQEDYRKPELASYL*ASAPRRRSHHCHQARASIPPHPTSR 1204
PC P ++ G + P+Q + P + P C P H
Sbjct: 230 CHPCKAIGPADDTGVEVWTPLQTTHLSPPDSGPALLVTPSSSEKVC-------PVHLVGH 282
Query: 1205 GIESWHPQLQHYPFIRTLSRVQTWETGPCALSGL 1306
S PQ Q P L +W+ P GL
Sbjct: 283 SCTSGSPQTQEAP---CLEATWSWDQLPSRAPGL 313
>ref|NP_001099081.1| tumor necrosis factor receptor superfamily member 5 precursor [Bos
taurus].
Length = 280
Score = 66.6 bits (161), Expect = 5e-11
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
M R PL C W L + + PA +C EK Y LCC +C PG LV DC + K
Sbjct: 1 MVRLPLQCLFWGF-FLTAVHSEPAT-ACGEKQYPVNS-LCCDLCPPGQKLVNDCTEVSK- 56
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHCNS--GLFVQN-CTLTANAKCACPEGWQCRDKE 727
C C +G F ++ +C R+CN GL +Q+ TL + C C EG C
Sbjct: 57 TECQSCGKG-EFLSTWNREKYCHEHRYCNPNLGLRIQSEGTLNTDTTCVCVEGQHCTSHT 115
Query: 728 CTEC 739
C C
Sbjct: 116 CESC 119
>ref|NP_777087.1| tumor necrosis factor receptor superfamily member 6 precursor [Bos
taurus].
Length = 323
Score = 66.2 bits (160), Expect = 6e-11
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +2
Query: 455 SCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCR 634
SC E Y + CCQ C PG DC + G C C +G ++ H C C
Sbjct: 44 SCQEGLY-REHQFCCQPCPPGKRKNGDCKRDGDTPECVLCSEGNEYTDKSHHSDKCIRCS 102
Query: 635 HCNS--GLFV-QNCTLTANAKCACPEGWQCRDKECTECD 742
C+ GL V QNCT T N KC C + C C C+
Sbjct: 103 ICDEEHGLEVEQNCTRTRNTKCRCKSNFFCNSSPCEHCN 141
>ref|NP_001096698.1| tumor necrosis factor receptor superfamily member 3 [Bos taurus].
Length = 428
Score = 53.9 bits (128), Expect = 3e-07
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +2
Query: 428 GLSATPAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSP 598
GL QSC ++ +Y ++ LCC C PGT + C + C C + S++
Sbjct: 40 GLPYHTENQSCGDQEKEYYESKLRLCCSRCPPGTHISTKCSRRQNTV-CATCPE-KSYNE 97
Query: 599 DYHSRPHCESCRHCNSGL-FVQ--NCTLTANAKCACPEGWQC--RDKECTECDGPAQTP 760
++ C+ CR C+ L FV+ CT A+C C G C + EC C+ + P
Sbjct: 98 HWNHLSFCQLCRPCDKMLGFVELTPCTSNRKAQCHCQPGMYCVFWNSECEHCEPLSDCP 156
>ref|NP_001092513.1| tumor necrosis factor receptor superfamily member 4 [Bos taurus].
Length = 278
Score = 53.5 bits (127), Expect = 4e-07
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Frame = +2
Query: 386 RSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARC 565
R+P L +LG + G +A P C Y G CC+ C PG + C+ H + C
Sbjct: 9 RAPGSALLLLGLVLGAAAQP---HCTGDTY-PSGNRCCKECPPGYGMESRCN-HNQDTVC 63
Query: 566 DPCKQGV-SFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK------ 724
PCK G + + +Y C C + Q CT T + C C G Q +D
Sbjct: 64 SPCKPGYYNEAVNYEPCKPCTQCSQRSGSEPKQRCTPTRDTVCGCRPGSQPQDSYGYKRG 123
Query: 725 -ECTECDGPAQTPG 763
+C C +PG
Sbjct: 124 VDCAPCPPGHFSPG 137
>ref|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-like [Bos taurus].
Length = 297
Score = 50.8 bits (120), Expect = 3e-06
Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Frame = +2
Query: 458 CPEKHYWARGELC--CQMCQPGTFLVKDCDQ-HGKAARCDPCKQGVSFSPDYHSRPHCES 628
C E YW + C CQ+C PG L KDC G A C C S H R C++
Sbjct: 3 CQENEYWDQWGRCVTCQLCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR--CQT 60
Query: 629 CRHCNSGLFVQ--NCTLTANAKC--ACPEGWQ------CRDKECTECDGPAQTP 760
C C +Q NCT T+NA C P +Q +D+EC C QTP
Sbjct: 61 CITCAVINRIQQANCTATSNAICGNCLPRFYQKTRIGGLQDQECIPC--TKQTP 112
>ref|NP_777099.1| tumor necrosis factor receptor superfamily member 1A precursor [Bos
taurus].
Length = 471
Score = 49.7 bits (117), Expect = 6e-06
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Frame = +2
Query: 458 CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
CP+ Y +CC C GT+L DC G+ C C G + + H R C SC
Sbjct: 44 CPQGKYNHPQNSTICCTKCHKGTYLYNDCPGPGRDTDCRVCAPGTYTALENHLR-RCLSC 102
Query: 632 RHCNSGLF---VQNCTLTANAKCAC-----PEGWQCRDKECTEC 739
C +F + C + + C C E W C C
Sbjct: 103 SRCRDEMFQVEISPCVVDRDTVCGCRKNQYREYWGETGFRCLNC 146
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,689,189
Number of extensions: 2074237
Number of successful extensions: 11716
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11509
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854464.1| PREDICTED: similar to Tumor necrosis factor rec... 377 e-104
Alignment gi|XP_546752.2| PREDICTED: similar to Tumor necrosis factor rec... 63 7e-10
Alignment gi|NP_001002982.1| tumor necrosis factor receptor superfamily m... 61 2e-09
Alignment gi|XP_854474.1| PREDICTED: similar to Tumor necrosis factor rec... 60 5e-09
Alignment gi|XP_543595.2| PREDICTED: similar to Tumor necrosis factor rec... 60 6e-09
Alignment gi|XP_549666.2| PREDICTED: similar to Tumor necrosis factor rec... 59 1e-08
Alignment gi|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor... 54 4e-07
Alignment gi|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor... 54 4e-07
>ref|XP_854464.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 7 precursor (CD27L receptor) (T-cell activation
antigen CD27) (T14) [Canis familiaris].
Length = 271
Score = 377 bits (968), Expect = e-104
Identities = 175/270 (64%), Positives = 204/270 (75%), Gaps = 22/270 (8%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
MAR P CWLW+LGTLAGLSATPAP+ CPEKHY +GE CCQMC+PGTFLVKDC++HG+AA
Sbjct: 1 MARPPPCWLWILGTLAGLSATPAPKRCPEKHYQVQGERCCQMCKPGTFLVKDCERHGEAA 60
Query: 560 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
+CDPC G SFSPD+H+R HCESCRHCNSGL ++NCTLTANA+C CP+GW+CRDK+CTEC
Sbjct: 61 QCDPCIPGASFSPDHHARRHCESCRHCNSGLLIRNCTLTANAECDCPKGWKCRDKQCTEC 120
Query: 740 DGPAQ---------TPGPHPQPSHSPYAE-----------AIPEARTSRYTQTLADVGQV 859
D P+ GPH QP+H PYA+ + E T R QTLAD +
Sbjct: 121 DPPSNPLLIPHPSPARGPHLQPTHLPYAKIKFQATLCPVTEMQETSTVRQVQTLADFRWL 180
Query: 860 PVPTISTYLSSQR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPA 1033
P P +ST+ QR CSS+CIRI V+LSG+FLAFT++GALF +QQRKY LN E PV P
Sbjct: 181 PAPALSTHWPPQRSLCSSDCIRIFVILSGMFLAFTMIGALFFHQQRKYRLNKEEYPVVPV 240
Query: 1034 EPCPYSYPREEEGSAIPIQEDYRKPELASY 1123
EPCPYS PREEEG AIPIQEDYRKPE ASY
Sbjct: 241 EPCPYSCPREEEGGAIPIQEDYRKPEPASY 270
>ref|XP_546752.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 25 precursor (WSL-1 protein) (Apoptosis-mediating
receptor DR3) (Apoptosis-mediating receptor TRAMP)
(Death domain receptor 3) (WSL protein) (Apoptosis
inducing receptor AIR) (Apo-3) (Lym... [Canis
familiaris].
Length = 422
Score = 62.8 bits (151), Expect = 7e-10
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +2
Query: 371 AGAMARSPLCWLWVLGTLA--GLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCD 541
A A P + +L L G +TPAP+ +C G CC+ C G +L C
Sbjct: 10 AAVAAVMPFLQVLLLALLGAQGQHSTPAPRCNCAYNFQKRNGLFCCKGCPAGHYLKGPCL 69
Query: 542 QHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW- 709
+ A C PC G + + H C C+ C+ S + ++NC++ A+ C C GW
Sbjct: 70 KPCGPAICLPCPWGTFLARENHHETRCTRCQACDEEVSQVALKNCSMVADTHCGCEPGWF 129
Query: 710 -QCRDKEC 730
+C K C
Sbjct: 130 LECLVKPC 137
>ref|NP_001002982.1| tumor necrosis factor receptor superfamily member 5 precursor
[Canis lupus familiaris].
Length = 274
Score = 61.2 bits (147), Expect = 2e-09
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 398 CWLWVLGTLAGLSATPAPQS-CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
C W G+L + P P++ C EK Y + CC MC PG LV DC H C C
Sbjct: 8 CLFW--GSLL-TTVYPEPRTACREKQYLVDSQ-CCNMCPPGEKLVNDC-LHTIDTECTRC 62
Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 739
+ G F +++ HC ++C N GL V+ T + C C EG C + C C
Sbjct: 63 QTG-EFLDTWNAERHCHQHKYCDPNLGLHVEKEGTSETDTTCTCDEGLHCTNAACESC 119
>ref|XP_854474.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 1A precursor (p60) (TNF-R1) (TNF-RI) (p55)
(CD120a) [Canis familiaris].
Length = 452
Score = 60.1 bits (144), Expect = 5e-09
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 17/226 (7%)
Frame = +2
Query: 458 CPEKHYWARGE--LCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRP--HCE 625
CP+ Y + +CC C GT+L DC G C C+ G + + H R C
Sbjct: 44 CPQGKYIHPQDDSICCTKCHKGTYLYNDCPGPGLDTDCRECENGTFTASENHLRQCLSCS 103
Query: 626 SCRHCNSGLFVQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQP 778
CR + + + CT+ + C C + W +C C +G Q Q
Sbjct: 104 KCRKEMNQVEISPCTVYRDTVCGCRKNQYRFYWSETLFQCNNCSLCLNGTVQISCQEKQN 163
Query: 779 S----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGVF 946
+ H+ + E + + + G++ +P + T Q S + LV+L G+
Sbjct: 164 TICTCHAGFFLREHECVSCVNCKKNTECGKLCLPPVETVKVPQDPGSTVLLPLVILFGIC 223
Query: 947 LAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIP 1084
+ +G + YQ++K L + C +P P E +++P
Sbjct: 224 VLSFSIGLMCRYQRQKPRLFSIVC----GKPTPTKEGEPESRASVP 265
>ref|XP_543595.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 6 precursor (FASL receptor) (Apoptosis-mediating
surface antigen FAS) (Apo-1 antigen) (CD95 antigen)
[Canis familiaris].
Length = 571
Score = 59.7 bits (143), Expect = 6e-09
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +2
Query: 476 WARG------ELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 637
W RG L ++ + GT DC + + C PC++G ++ H P C C
Sbjct: 29 WPRGVKAQVTSLSYKVLRSGTRKESDCTSYAGKSHCVPCQEGEEYTDKTHLSPKCRRCGI 88
Query: 638 CNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 742
C+ GL V+ NCT T N KC C + C C C+
Sbjct: 89 CDGEHGLEVERNCTQTRNTKCRCKPNFYCDVSPCEHCN 126
>ref|XP_549666.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 14 precursor (Herpesvirus entry mediator A)
(Tumor necrosis factor receptor-like 2) (TR2) [Canis
familiaris].
Length = 272
Score = 58.9 bits (141), Expect = 1e-08
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Frame = +2
Query: 377 AMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
A A S +L +LG+L AT AP C E+ Y E CC C PG + VK+
Sbjct: 18 ADALSQALYLLLLGSLPWALAT-AP--CKEEEYPVGSE-CCPKCSPG-YRVKEACGELTG 72
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFV---QNCTLTANAKCACPEGWQC---R 718
C PC G +++ + C CR C+ + + Q C+ T N CAC +G C
Sbjct: 73 TVCAPCDPG-TYTAHLNGLSECLQCRMCDPAMALVTRQKCSRTENTVCACAQGHFCISEN 131
Query: 719 DKECTEC 739
+ +C EC
Sbjct: 132 EDDCVEC 138
>ref|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor isoform 2 [Canis
familiaris].
Length = 267
Score = 53.5 bits (127), Expect = 4e-07
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Frame = +2
Query: 359 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 502
R WA + +A PL + + G LA A P Q+C ++ +Y + ++CC
Sbjct: 2 RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60
Query: 503 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 673
C PGT + +C + + C C + S++ ++ C+ CR C+ L + CT
Sbjct: 61 RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118
Query: 674 TANAKCACPEGWQC--RDKECTECDGPAQTP 760
+C C G C D EC C+ + P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149
>ref|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor isoform 1 [Canis
familiaris].
Length = 421
Score = 53.5 bits (127), Expect = 4e-07
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Frame = +2
Query: 359 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 502
R WA + +A PL + + G LA A P Q+C ++ +Y + ++CC
Sbjct: 2 RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60
Query: 503 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 673
C PGT + +C + + C C + S++ ++ C+ CR C+ L + CT
Sbjct: 61 RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118
Query: 674 TANAKCACPEGWQC--RDKECTECDGPAQTP 760
+C C G C D EC C+ + P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,251,107
Number of extensions: 2136369
Number of successful extensions: 12981
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12558
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001233.1| CD27 antigen precursor [Homo sapiens]. 377 e-104
Alignment gi|NP_001241.1| tumor necrosis factor receptor superfamily memb... 77 4e-14
Alignment gi|NP_690593.1| tumor necrosis factor receptor superfamily memb... 74 4e-13
Alignment gi|NP_690611.1| tumor necrosis factor receptor superfamily memb... 70 6e-12
Alignment gi|NP_690610.1| tumor necrosis factor receptor superfamily memb... 70 6e-12
Alignment gi|NP_000034.1| tumor necrosis factor receptor superfamily memb... 70 6e-12
Alignment gi|NP_001056.1| tumor necrosis factor receptor superfamily memb... 55 1e-07
Alignment gi|NP_001034753.1| tumor necrosis factor receptor superfamily m... 54 3e-07
Alignment gi|NP_683867.1| tumor necrosis factor receptor superfamily memb... 54 3e-07
Alignment gi|NP_683866.1| tumor necrosis factor receptor superfamily memb... 54 3e-07
>ref|NP_001233.1| CD27 antigen precursor [Homo sapiens].
Length = 260
Score = 377 bits (967), Expect = e-104
Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 11/257 (4%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
MAR WL VLGTL GLSATPAP+SCPE+HYWA+G+LCCQMC+PGTFLVKDCDQH KAA
Sbjct: 1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 60
Query: 560 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
+CDPC GVSFSPD+H+RPHCESCRHCNSGL V+NCT+TANA+CAC GWQCRDKECTEC
Sbjct: 61 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 120
Query: 740 D---------GPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSS 892
D +Q PHPQP+H PY + EART+ + QTLAD Q+P T+ST+
Sbjct: 121 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 180
Query: 893 QR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREE 1066
QR CSS+ IRILV+ SG+FL FT+ GALFL+Q+RKY N GE PV PAEPC YS PREE
Sbjct: 181 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE 240
Query: 1067 EGSAIPIQEDYRKPELA 1117
EGS IPIQEDYRKPE A
Sbjct: 241 EGSTIPIQEDYRKPEPA 257
>ref|NP_001241.1| tumor necrosis factor receptor superfamily member 5 isoform 1
precursor [Homo sapiens].
Length = 277
Score = 77.0 bits (188), Expect = 4e-14
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 20/258 (7%)
Frame = +2
Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
M R PL C LW G L P +C EK Y + CC +CQPG LV DC + +
Sbjct: 1 MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 727
C PC + F ++ HC ++C N GL V Q T + C C EGW C +
Sbjct: 57 TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115
Query: 728 CTECD-GPAQTPG------------PHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVP 868
C C + +PG +P + + A + T + + V
Sbjct: 116 CESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQ 175
Query: 869 TISTYLSSQRCS-SECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCP 1045
T + C + +R LVV+ +F + + ++ ++ T + P EP
Sbjct: 176 QAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQE 235
Query: 1046 YSYPREEEGS--AIPIQE 1093
++P + GS A P+QE
Sbjct: 236 INFPDDLPGSNTAAPVQE 253
>ref|NP_690593.1| tumor necrosis factor receptor superfamily member 5 isoform 2
precursor [Homo sapiens].
Length = 203
Score = 73.6 bits (179), Expect = 4e-13
Identities = 45/124 (36%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
M R PL C LW G L P +C EK Y + CC +CQPG LV DC + +
Sbjct: 1 MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 727
C PC + F ++ HC ++C N GL V Q T + C C EGW C +
Sbjct: 57 TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115
Query: 728 CTEC 739
C C
Sbjct: 116 CESC 119
>ref|NP_690611.1| tumor necrosis factor receptor superfamily member 6 isoform 3
precursor [Homo sapiens].
Length = 220
Score = 69.7 bits (169), Expect = 6e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_690610.1| tumor necrosis factor receptor superfamily member 6 isoform 2
precursor [Homo sapiens].
Length = 314
Score = 69.7 bits (169), Expect = 6e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_000034.1| tumor necrosis factor receptor superfamily member 6 isoform 1
precursor [Homo sapiens].
Length = 335
Score = 69.7 bits (169), Expect = 6e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
G+ C + C PG +DC +G C PC++G ++ H C CR C+ G ++
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
NCT T N KC C + C C CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144
>ref|NP_001056.1| tumor necrosis factor receptor superfamily member 1A precursor [Homo
sapiens].
Length = 455
Score = 55.5 bits (132), Expect = 1e-07
Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 19/206 (9%)
Frame = +2
Query: 458 CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
CP+ Y +CC C GT+L DC G+ C C+ G + + H R HC SC
Sbjct: 44 CPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLR-HCLSC 102
Query: 632 RHCNSGL---FVQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQ 775
C + + +CT+ + C C + W +C C +G Q
Sbjct: 103 SKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQ 162
Query: 776 PS----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGV 943
+ H+ + E + + + ++ +P I ++ + + LV+ G+
Sbjct: 163 NTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIENVKGTEDSGTTVLLPLVIFFGL 222
Query: 944 -FLAFTVVGALFLYQQRKYGLNTGEC 1018
L+ +G ++ YQ+ K L + C
Sbjct: 223 CLLSLLFIGLMYRYQRWKSKLYSIVC 248
>ref|NP_001034753.1| tumor necrosis factor receptor superfamily member 25 isoform 12
precursor [Homo sapiens].
Length = 181
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 719 DKEC 730
+C
Sbjct: 127 VSQC 130
>ref|NP_683867.1| tumor necrosis factor receptor superfamily member 25 isoform 3
precursor [Homo sapiens].
Length = 380
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 719 DKEC 730
+C
Sbjct: 127 VSQC 130
>ref|NP_683866.1| tumor necrosis factor receptor superfamily member 25 isoform 1
precursor [Homo sapiens].
Length = 426
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Frame = +2
Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
G A + L +LG A C + G CC+ C G +L C +
Sbjct: 7 GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
+ C C Q + + H C C+ C+ S + ++NC+ A+ +C C GW +C+
Sbjct: 67 NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126
Query: 719 DKEC 730
+C
Sbjct: 127 VSQC 130
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,089,763
Number of extensions: 2100969
Number of successful extensions: 11521
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 11259
Number of HSP's successfully gapped: 16
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028298.1| CD27 antigen isoform a [Mus musculus]. 307 1e-83
Alignment gi|NP_001036029.1| CD27 antigen isoform b [Mus musculus]. 99 7e-21
Alignment gi|NP_032013.2| tumor necrosis factor receptor superfamily memb... 76 5e-14
Alignment gi|NP_733805.1| tumor necrosis factor receptor superfamily memb... 68 2e-11
Alignment gi|NP_733804.1| tumor necrosis factor receptor superfamily memb... 68 2e-11
Alignment gi|NP_733803.2| tumor necrosis factor receptor superfamily memb... 68 2e-11
Alignment gi|NP_035741.2| tumor necrosis factor receptor superfamily memb... 68 2e-11
Alignment gi|NP_035789.1| tumor necrosis factor receptor superfamily memb... 65 2e-10
Alignment gi|NP_034866.1| tumor necrosis factor receptor superfamily memb... 55 2e-07
Alignment gi|NP_076169.2| tumor necrosis factor receptor superfamily memb... 55 2e-07
>ref|NP_001028298.1| CD27 antigen isoform a [Mus musculus].
Length = 250
Score = 307 bits (787), Expect = 1e-83
Identities = 148/259 (57%), Positives = 175/259 (67%), Gaps = 11/259 (4%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
MA P WL +LGTL GLSAT AP SCP+KHYW G LCC+MC+PGTF VKDC+Q AA
Sbjct: 1 MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEPGTFFVKDCEQDRTAA 60
Query: 560 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
+CDPC G SFSPDYH+RPHCESCRHCNSG ++NCT+TANA+C+C + WQCRD+ECTEC
Sbjct: 61 QCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECSCSKNWQCRDQECTEC 120
Query: 740 D---------GPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSS 892
D P++TP P P P+H P+ P R Q+P T+ + SS
Sbjct: 121 DPPLNPALTRQPSETPSPQPPPTHLPHGTEKPSWPLHR---------QLPNSTVYSQRSS 171
Query: 893 QR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREE 1066
R CSS+CIRI V S +FL F + LF +Q+R +G N V P EPCPYS PREE
Sbjct: 172 HRPLCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAV-PEEPCPYSCPREE 230
Query: 1067 EGSAIPIQEDYRKPELASY 1123
EGSAIPIQEDYRKPE A Y
Sbjct: 231 EGSAIPIQEDYRKPEPAFY 249
>ref|NP_001036029.1| CD27 antigen isoform b [Mus musculus].
Length = 146
Score = 99.0 bits (245), Expect = 7e-21
Identities = 53/92 (57%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Frame = +2
Query: 854 QVPVPTISTYLSSQR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVA 1027
Q+P T+ + SS R CSS+CIRI V S +FL F + LF +Q+R +G N V
Sbjct: 55 QLPNSTVYSQRSSHRPLCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAV- 113
Query: 1028 PAEPCPYSYPREEEGSAIPIQEDYRKPELASY 1123
P EPCPYS PREEEGSAIPIQEDYRKPE A Y
Sbjct: 114 PEEPCPYSCPREEEGSAIPIQEDYRKPEPAFY 145
Score = 70.9 bits (172), Expect = 2e-12
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQP 514
MA P WL +LGTL GLSAT AP SCP+KHYW G LCC+MC+P
Sbjct: 1 MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEP 45
>ref|NP_032013.2| tumor necrosis factor receptor superfamily member 6 isoform 1
precursor [Mus musculus].
Length = 327
Score = 76.3 bits (186), Expect = 5e-14
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 452 QSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
++C E Y G CCQ CQPG V+DC +G C PC +G + H C C
Sbjct: 42 KNCSEGLYQG-GPFCCQPCQPGKKKVEDCKMNGGTPTCAPCTEGKEYMDKNHYADKCRRC 100
Query: 632 RHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 739
C+ GL V+ NCTLT N KC C + C C C
Sbjct: 101 TLCDEEHGLEVETNCTLTQNTKCKCKPDFYCDSPGCEHC 139
>ref|NP_733805.1| tumor necrosis factor receptor superfamily member 5 isoform 4 [Mus
musculus].
Length = 222
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_733804.1| tumor necrosis factor receptor superfamily member 5 isoform 2 [Mus
musculus].
Length = 203
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_733803.2| tumor necrosis factor receptor superfamily member 5 isoform 5 [Mus
musculus].
Length = 260
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_035741.2| tumor necrosis factor receptor superfamily member 5 isoform 1 [Mus
musculus].
Length = 289
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
LC LW G L +C +K Y G+ CC +CQPG+ L C K +C PC
Sbjct: 7 LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62
Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
G FS ++ C RHC N GL V+ T ++ C C EG C K+C C
Sbjct: 63 DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119
>ref|NP_035789.1| tumor necrosis factor receptor superfamily member 4 precursor [Mus
musculus].
Length = 272
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Frame = +2
Query: 404 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
L +LG G++A +C KH + G CC+ CQPG +V CD H + C PC+ G
Sbjct: 11 LLLLGLTLGVTARRL--NCV-KHTYPSGHKCCRECQPGHGMVSRCD-HTRDTLCHPCETG 66
Query: 584 -VSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK-------ECTEC 739
+ + +Y + C C H + QNCT T + C C G Q R +C C
Sbjct: 67 FYNEAVNYDTCKQCTQCNHRSGSELKQNCTPTQDTVCRCRPGTQPRQDSGYKLGVDCVPC 126
Query: 740 DGPAQTPG 763
+PG
Sbjct: 127 PPGHFSPG 134
>ref|NP_034866.1| tumor necrosis factor receptor superfamily member 3 precursor [Mus
musculus].
Length = 415
Score = 54.7 bits (130), Expect = 2e-07
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Frame = +2
Query: 383 ARSP--LCWLWVLGTLAGLSATPAPQSCP-------------EKHYWARGELCCQMCQPG 517
A SP L W +L L+GL PQ P +++Y ++CC C PG
Sbjct: 6 ASSPCGLAWGPLLLGLSGLLVASQPQLVPPYRIENQTCWDQDKEYYEPMHDVCCSRCPPG 65
Query: 518 TFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGL---FVQNCTLTANAK 688
F+ C + + C C S++ ++ C+ CR C+ L V CT A+
Sbjct: 66 EFVFAVCSR-SQDTVCKTCPHN-SYNEHWNHLSTCQLCRPCDIVLGFEEVAPCTSDRKAE 123
Query: 689 CACPEGWQC--RDKECTECD 742
C C G C D EC C+
Sbjct: 124 CRCQPGMSCVYLDNECVHCE 143
>ref|NP_076169.2| tumor necrosis factor receptor superfamily member 22 [Mus
musculus].
Length = 180
Score = 54.7 bits (130), Expect = 2e-07
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Frame = +2
Query: 458 CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 637
CP YW++ ++CC+ C GTF+ C+ +C+ C G +F+ + C C
Sbjct: 48 CPAGEYWSK-DVCCKNCSAGTFVKAPCEIPHTQGQCEKCHPG-TFTEKDNYLDACILCST 105
Query: 638 CNSGL-FVQNCTLTANAKCACPEGWQCRD-------KECTEC 739
C+ V +C+ T++ KC C G D + CT+C
Sbjct: 106 CDKDQEMVADCSATSDRKCQCRTGLYYYDPKFPESCRPCTKC 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,012,019
Number of extensions: 1729358
Number of successful extensions: 9449
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9220
Number of HSP's successfully gapped: 19
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa]. 544 e-155
Alignment gi|NP_999004.1| tumor necrosis factor receptor superfamily memb... 80 2e-15
Alignment gi|XP_003127580.1| PREDICTED: tumor necrosis factor receptor su... 64 1e-10
Alignment gi|NP_999359.1| tumor necrosis factor receptor superfamily memb... 61 2e-09
Alignment gi|XP_003126595.1| PREDICTED: tumor necrosis factor receptor su... 56 4e-08
Alignment gi|NP_999134.1| tumor necrosis factor receptor superfamily memb... 53 4e-07
Alignment gi|XP_003131613.2| PREDICTED: tumor necrosis factor receptor su... 49 5e-06
Alignment gi|XP_003127545.1| PREDICTED: tumor necrosis factor receptor su... 49 5e-06
Alignment gi|NP_001090910.2| tumor necrosis factor receptor superfamily m... 49 6e-06
>ref|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa].
Length = 249
Score = 544 bits (1401), Expect = e-155
Identities = 249/249 (100%), Positives = 249/249 (100%)
Frame = +2
Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA
Sbjct: 1 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 60
Query: 560 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC
Sbjct: 61 RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 120
Query: 740 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR 919
DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR
Sbjct: 121 DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR 180
Query: 920 ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 1099
ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY
Sbjct: 181 ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 240
Query: 1100 RKPELASYL 1126
RKPELASYL
Sbjct: 241 RKPELASYL 249
>ref|NP_999004.1| tumor necrosis factor receptor superfamily member 6 precursor [Sus
scrofa].
Length = 332
Score = 80.5 bits (197), Expect = 2e-15
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 431 LSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHS 610
L+ T CPE + G+ CCQ C PG DC G A +C PC +G ++ H
Sbjct: 37 LNITKRESECPEGQH-REGQFCCQPCPPGKRKHADCTSPGGAPQCVPCSEGEDYTDKNHH 95
Query: 611 RPHCESCRHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 742
C CR C+ GL V+ NCT T N KC C + C +C C+
Sbjct: 96 SSKCRRCRVCDGEHGLEVEKNCTRTQNTKCRCKPNFFCHTSQCEHCN 142
>ref|XP_003127580.1| PREDICTED: tumor necrosis factor receptor superfamily member 25-like
[Sus scrofa].
Length = 415
Score = 64.3 bits (155), Expect = 1e-10
Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 22/257 (8%)
Frame = +2
Query: 404 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
L +L G +TP+ + G +CC+ C G +L C + AA C PC QG
Sbjct: 17 LLLLPGARGQGSTPSAHCDCVPNQKRNGLVCCRGCPAGHYLKAPCTKPCGAATCLPCPQG 76
Query: 584 VSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW-------QC------ 715
+ + H C C+ C+ + ++NC+ A+ C C GW QC
Sbjct: 77 TFLAWENHHETRCARCQACDEQAPQVALKNCSAVADTHCGCRPGWFMECVVSQCLLGSPF 136
Query: 716 RDKECTECDGPAQTPGPHPQPSHSPYAEA-IP---EARTSRYTQTLADVGQVPVPTISTY 883
R + CT+C G P S + A +P E S + + +G P P ++
Sbjct: 137 RCRRCTDC-GALHRHTQEPCSSKDAHCGACLPGFYEHGNSCVSCPTSTLGSCPEPCVAV- 194
Query: 884 LSSQRCSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPRE 1063
C + + VL +A ++GA Y R+ +PC P
Sbjct: 195 -----CGWRHMFWVQVLLAGLVAPLLLGATLTYTYRR------------CQPCKAMVPAG 237
Query: 1064 EEG--SAIPIQEDYRKP 1108
E G + P+Q P
Sbjct: 238 EAGVEALTPLQATQLSP 254
>ref|NP_999359.1| tumor necrosis factor receptor superfamily member 5 precursor [Sus
scrofa].
Length = 278
Score = 60.8 bits (146), Expect = 2e-09
Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Frame = +2
Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
M R PL C LW G P SC E Y CC +C PG LV C + +
Sbjct: 1 MVRLPLKCLLW--GCFLTAVHPEPPTSCKENQYPTNSR-CCNLCPPGQKLVNHCTEVTE- 56
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKE 727
C PC F ++ HC ++C N GL VQ T + C C EG C +
Sbjct: 57 TECLPCSSS-EFLATWNREKHCHQHKYCDPNLGLQVQREGTSKTDTTCVCSEGHHCTNSA 115
Query: 728 CTEC 739
C C
Sbjct: 116 CESC 119
>ref|XP_003126595.1| PREDICTED: tumor necrosis factor receptor superfamily member 3-like
[Sus scrofa].
Length = 421
Score = 56.2 bits (134), Expect = 4e-08
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Frame = +2
Query: 443 PAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSR 613
P Q+C ++ +Y + +CC C PGT + +C H + C C + S++ ++
Sbjct: 38 PENQTCQDQKREYYEPKHHVCCSRCPPGTHVSAEC-SHDQNTACATCPEN-SYNEHWNHL 95
Query: 614 PHCESCRHCNSGL---FVQNCTLTANAKCACPEGWQC--RDKECTECD 742
C+ CR C+ L V CT A+C C G C D EC C+
Sbjct: 96 SICQLCRPCDQMLGFMEVTPCTSKHKAQCRCQPGMFCVFWDSECVHCE 143
>ref|NP_999134.1| tumor necrosis factor receptor superfamily member 1A precursor [Sus
scrofa].
Length = 461
Score = 52.8 bits (125), Expect = 4e-07
Identities = 59/219 (26%), Positives = 83/219 (37%), Gaps = 23/219 (10%)
Frame = +2
Query: 458 CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
CP+ Y +CC C GT+L DC G C C G +F+ + C SC
Sbjct: 44 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNG-TFTASENHLTQCLSC 102
Query: 632 RHCNSGLF---VQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQ 775
C S + + CT+ + C C + W +C C +G Q P Q
Sbjct: 103 SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPCLEKQ 162
Query: 776 PS----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGV 943
+ HS + E S AD + T T Q + + LV+ G+
Sbjct: 163 DTICNCHSGFFLRDKEC-VSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIFFGL 221
Query: 944 FLAFTV-VGALFLYQQRK---YGLNTGE-CPVAPAEPCP 1045
LAF + VG YQ+ K Y + G+ PV EP P
Sbjct: 222 CLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP 260
>ref|XP_003131613.2| PREDICTED: tumor necrosis factor receptor superfamily member
16-like [Sus scrofa].
Length = 212
Score = 49.3 bits (116), Expect = 5e-06
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Frame = +2
Query: 404 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
L +L L G+S A ++CP Y GE CC+ C G + + C + C+PC
Sbjct: 15 LLLLLLLQGVSLGGAKETCPTGMYTHSGE-CCKACNLGEGVAQPCGANQTV--CEPCLDS 71
Query: 584 VSFSPDYHSRPHCESCRHCNSGLFVQN--CTLTANAKCACPEGW---------------- 709
V+FS + C+ C C GL + C +A C C G+
Sbjct: 72 VTFSDVVSATEPCKPCTEC-VGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE 130
Query: 710 -------QCRDKE---CTEC-DGPAQTPGPHPQP 778
C+DK+ C EC DG H P
Sbjct: 131 AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDP 164
>ref|XP_003127545.1| PREDICTED: tumor necrosis factor receptor superfamily member 4-like
[Sus scrofa].
Length = 278
Score = 49.3 bits (116), Expect = 5e-06
Identities = 68/249 (27%), Positives = 97/249 (38%), Gaps = 44/249 (17%)
Frame = +2
Query: 485 GELCCQMCQPGTFLVKDCD--QHGKAARCDP--CKQGVSFSPDYHSRPHCESCRHCN--S 646
G CC+ CQPG + + C Q + +RC P + V++ P C+ C CN S
Sbjct: 38 GRRCCKECQPGYGMERRCTDTQETECSRCKPGFYNEAVNYEP-------CKPCTQCNQRS 90
Query: 647 GLFV-QNCTLTANAKCACPEGWQCRD-------KECTECDGPAQTPGPHP--QP------ 778
G V Q CT T + C C G Q +D +C C +PG QP
Sbjct: 91 GSEVKQRCTNTTDTVCGCRPGTQPQDGFGYKRGVDCVRCPPGHFSPGNDQACQPWTNCTL 150
Query: 779 -------SHSPYAEAIPEARTSRYT---QTLADVGQVPV--PTISTYLSSQRCSS----- 907
+ S ++A+ E R+ T +T + P PT + +SQ S+
Sbjct: 151 VGKRTLQAASNSSDAVCEDRSPPATPPQETQGPPARSPTARPTTAWPRTSQEPSTPHTES 210
Query: 908 ----ECIRILVVLSGVFLAFTVVGAL-FLYQQRKYGLNTGECPVAPAEPCPYSYPREEEG 1072
E +L + G+ L V L L R + L P AP P E G
Sbjct: 211 PKGPELAAVLGLGLGLVLLAPVAAVLVLLLHHRAWRL----LPNAPKPP-------RENG 259
Query: 1073 SAIPIQEDY 1099
IPIQE++
Sbjct: 260 FRIPIQEEH 268
>ref|NP_001090910.2| tumor necrosis factor receptor superfamily member 1B [Sus scrofa].
Length = 461
Score = 48.9 bits (115), Expect = 6e-06
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Frame = +2
Query: 404 LWVLGTLAGLSATPAP------QSC--PEKHYW-ARGELCCQMCQPGTFLVKDCDQHGKA 556
LW G A P SC P K Y+ + ++CC C PG + C++
Sbjct: 16 LWAAGRAVPSQAVFMPYAPELGSSCRLPLKEYYDTKAQMCCSKCPPGFRIQTSCNRTSDT 75
Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCR-HCNSG-LFVQNCTLTANAKCACPEGWQC---RD 721
C C+ +++ ++S C SC C+S + Q CT N C+C GW C R
Sbjct: 76 V-CGSCESS-TYTQLWNSVSACFSCNSRCSSDQVETQACTPKQNRICSCKPGWYCTLGRQ 133
Query: 722 KECTEC 739
+ C C
Sbjct: 134 EGCRLC 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,914,674
Number of extensions: 1350431
Number of successful extensions: 7491
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002498
(1312 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1023 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1023 bits (516), Expect = 0.0
Identities = 516/516 (100%)
Strand = Plus / Minus
Query: 1 ccacattttgtcagaggcaggtggagacaagttaaatgcttggcgagcggaagagacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664135 ccacattttgtcagaggcaggtggagacaagttaaatgcttggcgagcggaagagacaag 66664076
Query: 61 agaccacggagagactgctgtgatgggggcgcctttgaagagcgcaggtcctctgacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664075 agaccacggagagactgctgtgatgggggcgcctttgaagagcgcaggtcctctgacaga 66664016
Query: 121 gtttgccctttaatactctcccagcacccagcgcacggaaaaggggtgggggcagtggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664015 gtttgccctttaatactctcccagcacccagcgcacggaaaaggggtgggggcagtggca 66663956
Query: 181 gtgacagtgactgcatgagtgagaaacagccacagtagcgcttcaacggcatcagaggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663955 gtgacagtgactgcatgagtgagaaacagccacagtagcgcttcaacggcatcagaggtc 66663896
Query: 241 ggcctgccacctgaggggggcaactcccagaagacctgcctgggaggtgcaaagaagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663895 ggcctgccacctgaggggggcaactcccagaagacctgcctgggaggtgcaaagaagaga 66663836
Query: 301 caccagcacccagctggggaggtgccagctcccccaaggccacagctggggcacaggaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663835 caccagcacccagctggggaggtgccagctcccccaaggccacagctggggcacaggaag 66663776
Query: 361 aacttcctgggcaggggccatggcccggtcacctctctgctggctgtgggttctgggtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663775 aacttcctgggcaggggccatggcccggtcacctctctgctggctgtgggttctgggtac 66663716
Query: 421 cctggcagggctctccgctaccccagccccccagagctgtccagagaagcactactgggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663715 cctggcagggctctccgctaccccagccccccagagctgtccagagaagcactactgggc 66663656
Query: 481 tcggggcgaactgtgctgccagatgtgccagccagg 516
||||||||||||||||||||||||||||||||||||
Sbjct: 66663655 tcggggcgaactgtgctgccagatgtgccagccagg 66663620
Score = 581 bits (293), Expect = e-163
Identities = 304/308 (98%)
Strand = Plus / Minus
Query: 1005 acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659243 acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 66659184
Query: 1065 aggagggcagcgccatccccattcaggaagattaccgaaaaccagagctcgcttcctacc 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659183 aggagggcagcgccatccccattcaggaagattaccgaaaaccagagctcgcttcctacc 66659124
Query: 1125 tctgagccagcgctccgcggaggagaagccatcactgccatcaagcccgagcttccatcc 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659123 tctgagccagcgctccgcggaggagaagccatcactgccatcaagcccgagcttccatcc 66659064
Query: 1185 cacctcacccgacatccagggggatcgagagctggcacccccaacttcagcactacccct 1244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 66659063 cacctcacccgacatccagggggatcgagagctggcacccccaatttcagcactacccct 66659004
Query: 1245 tcatcagaaccctttcccgtgtgcagacttgggaaactggnccatgtgccctttcgggac 1304
|||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct: 66659003 tcatcagaaccctttcccgtgtgcagacttgggaaactggccaatgtgccttttcgggac 66658944
Query: 1305 tggtgtgt 1312
||||||||
Sbjct: 66658943 tggtgtgt 66658936
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 647 ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660294 ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 66660235
Query: 707 tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660234 tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 66660175
Query: 767 cacccacaaccctcccactcaccttatgctgaag 800
||||||||||||||||||||||||||||||||||
Sbjct: 66660174 cacccacaaccctcccactcaccttatgctgaag 66660141
Score = 264 bits (133), Expect = 1e-67
Identities = 136/137 (99%)
Strand = Plus / Minus
Query: 513 caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663442 caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 66663383
Query: 573 gtaaacagggggtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 632
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663382 gtaaacagggagtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 66663323
Query: 633 ggcactgtaactctggt 649
|||||||||||||||||
Sbjct: 66663322 ggcactgtaactctggt 66663306
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 891 cccaaaggtgcagctcggagtgcatccgcatccttgtggtcctctctggagtgtttcttg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659586 cccaaaggtgcagctcggagtgcatccgcatccttgtggtcctctctggagtgtttcttg 66659527
Query: 951 ctttcaccgtagtcggagccctgttcctctatcaacaaagaaaatatggattaa 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659526 ctttcaccgtagtcggagccctgttcctctatcaacaaagaaaatatggattaa 66659473
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 799 agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659942 agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 66659883
Query: 859 tcctgtcccaactatctccacctacttgtctt 890
||||||||||||||||||||||||||||||||
Sbjct: 66659882 tcctgtcccaactatctccacctacttgtctt 66659851
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,816,483
Number of extensions: 294
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 6
Length of query: 1312
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1291
Effective length of database: 2,808,413,156
Effective search space: 3625661384396
Effective search space used: 3625661384396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)