Animal-Genome cDNA 20110601C-002498


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001075903.1| CD27 antigen [Bos taurus].                        418   e-117
Alignment   gi|NP_001137549.1| tumor necrosis factor receptor superfamily m...    71   2e-12
Alignment   gi|NP_001099081.1| tumor necrosis factor receptor superfamily m...    67   5e-11
Alignment   gi|NP_777087.1| tumor necrosis factor receptor superfamily memb...    66   6e-11
Alignment   gi|NP_001096698.1| tumor necrosis factor receptor superfamily m...    54   3e-07
Alignment   gi|NP_001092513.1| tumor necrosis factor receptor superfamily m...    54   4e-07
Alignment   gi|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-l...    51   3e-06
Alignment   gi|NP_777099.1| tumor necrosis factor receptor superfamily memb...    50   6e-06

>ref|NP_001075903.1| CD27 antigen [Bos taurus].
          Length = 249

 Score =  418 bits (1075), Expect = e-117
 Identities = 190/250 (76%), Positives = 215/250 (86%), Gaps = 2/250 (0%)
 Frame = +2

Query: 380  MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
            MAR P CWLWVLGTLAGLSATP P+SCPEKHYWA+G  CCQMC+PGTFLVKDC+QH +AA
Sbjct: 1    MARLPPCWLWVLGTLAGLSATPGPKSCPEKHYWAQGGWCCQMCEPGTFLVKDCEQHREAA 60

Query: 560  RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
            +C+PC  GVSF PD+HSRPHCESCRHCNSGL ++NCTLTAN++CACPEG QCRDK+C EC
Sbjct: 61   QCNPCTPGVSFMPDHHSRPHCESCRHCNSGLLIRNCTLTANSECACPEGQQCRDKDCMEC 120

Query: 740  DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQR--CSSEC 913
            DGPAQ PGPHPQPSH PYAE I E+RT R+TQTLA+   +P PT+ST+ S QR  CS+ C
Sbjct: 121  DGPAQAPGPHPQPSHLPYAEEIAESRTDRHTQTLANSRWLPAPTLSTHWSPQRSLCSANC 180

Query: 914  IRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQE 1093
            IRI V+LSG+FLAFT+VGALFL+QQRK  LN GE PVAPAEPCPY+ P EEEGSAIPIQE
Sbjct: 181  IRIFVLLSGMFLAFTIVGALFLHQQRK--LNAGESPVAPAEPCPYTCPSEEEGSAIPIQE 238

Query: 1094 DYRKPELASY 1123
            DYRKPE  SY
Sbjct: 239  DYRKPEPTSY 248


>ref|NP_001137549.1| tumor necrosis factor receptor superfamily member 25 [Bos taurus].
          Length = 418

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 77/334 (23%), Positives = 116/334 (34%), Gaps = 22/334 (6%)
 Frame = +2

Query: 371  AGAMARSPLCWLWVLGTLAGLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCDQH 547
            A A A   L +L +LG  A   +TP+P+  C        G  CC+ C  G +L   C + 
Sbjct: 11   AAAAAAVALLFLLLLGARA---STPSPRCDCGHSFPKRSGLGCCKGCPAGHYLKAPCTKP 67

Query: 548  GKAARCDPCKQGVSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW--- 709
              AA C PC QG   + + H    C  C+ C+     + ++NC+  A+  C C  GW   
Sbjct: 68   CGAATCLPCPQGTFLARENHYETRCARCQACDELAPQMALRNCSAVADTHCGCRPGWFMD 127

Query: 710  ----QCRD------KECTECDG---PAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADV 850
                QCR       + CT+C       QTP                E   S  +   + +
Sbjct: 128  CMVSQCRHGSPFRCRPCTDCGALHRHTQTPCSSRDTHCGTCLPGFYEYDKSCVSCPTSTL 187

Query: 851  GQVPVPTISTYLSSQRCSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAP 1030
            G  P P ++       C    +  + +L    +   ++GA   Y   +            
Sbjct: 188  GSCPEPCVAV------CGWRQMFWVQMLVAGLVVPLLLGATLTYTYHR------------ 229

Query: 1031 AEPCPYSYPREEEGSAI--PIQEDYRKPELASYL*ASAPRRRSHHCHQARASIPPHPTSR 1204
              PC    P ++ G  +  P+Q  +  P  +       P      C       P H    
Sbjct: 230  CHPCKAIGPADDTGVEVWTPLQTTHLSPPDSGPALLVTPSSSEKVC-------PVHLVGH 282

Query: 1205 GIESWHPQLQHYPFIRTLSRVQTWETGPCALSGL 1306
               S  PQ Q  P    L    +W+  P    GL
Sbjct: 283  SCTSGSPQTQEAP---CLEATWSWDQLPSRAPGL 313


>ref|NP_001099081.1| tumor necrosis factor receptor superfamily member 5 precursor [Bos
           taurus].
          Length = 280

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
 Frame = +2

Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
           M R PL C  W    L  + + PA  +C EK Y     LCC +C PG  LV DC +  K 
Sbjct: 1   MVRLPLQCLFWGF-FLTAVHSEPAT-ACGEKQYPVNS-LCCDLCPPGQKLVNDCTEVSK- 56

Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHCNS--GLFVQN-CTLTANAKCACPEGWQCRDKE 727
             C  C +G  F   ++   +C   R+CN   GL +Q+  TL  +  C C EG  C    
Sbjct: 57  TECQSCGKG-EFLSTWNREKYCHEHRYCNPNLGLRIQSEGTLNTDTTCVCVEGQHCTSHT 115

Query: 728 CTEC 739
           C  C
Sbjct: 116 CESC 119


>ref|NP_777087.1| tumor necrosis factor receptor superfamily member 6 precursor [Bos
           taurus].
          Length = 323

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +2

Query: 455 SCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCR 634
           SC E  Y    + CCQ C PG     DC + G    C  C +G  ++   H    C  C 
Sbjct: 44  SCQEGLY-REHQFCCQPCPPGKRKNGDCKRDGDTPECVLCSEGNEYTDKSHHSDKCIRCS 102

Query: 635 HCNS--GLFV-QNCTLTANAKCACPEGWQCRDKECTECD 742
            C+   GL V QNCT T N KC C   + C    C  C+
Sbjct: 103 ICDEEHGLEVEQNCTRTRNTKCRCKSNFFCNSSPCEHCN 141


>ref|NP_001096698.1| tumor necrosis factor receptor superfamily member 3 [Bos taurus].
          Length = 428

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
 Frame = +2

Query: 428 GLSATPAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSP 598
           GL      QSC ++   +Y ++  LCC  C PGT +   C +      C  C +  S++ 
Sbjct: 40  GLPYHTENQSCGDQEKEYYESKLRLCCSRCPPGTHISTKCSRRQNTV-CATCPE-KSYNE 97

Query: 599 DYHSRPHCESCRHCNSGL-FVQ--NCTLTANAKCACPEGWQC--RDKECTECDGPAQTP 760
            ++    C+ CR C+  L FV+   CT    A+C C  G  C   + EC  C+  +  P
Sbjct: 98  HWNHLSFCQLCRPCDKMLGFVELTPCTSNRKAQCHCQPGMYCVFWNSECEHCEPLSDCP 156


>ref|NP_001092513.1| tumor necrosis factor receptor superfamily member 4 [Bos taurus].
          Length = 278

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
 Frame = +2

Query: 386 RSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARC 565
           R+P   L +LG + G +A P    C    Y   G  CC+ C PG  +   C+ H +   C
Sbjct: 9   RAPGSALLLLGLVLGAAAQP---HCTGDTY-PSGNRCCKECPPGYGMESRCN-HNQDTVC 63

Query: 566 DPCKQGV-SFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK------ 724
            PCK G  + + +Y     C  C   +     Q CT T +  C C  G Q +D       
Sbjct: 64  SPCKPGYYNEAVNYEPCKPCTQCSQRSGSEPKQRCTPTRDTVCGCRPGSQPQDSYGYKRG 123

Query: 725 -ECTECDGPAQTPG 763
            +C  C     +PG
Sbjct: 124 VDCAPCPPGHFSPG 137


>ref|XP_002700084.1| PREDICTED: X-linked ectodysplasin receptor-like [Bos taurus].
          Length = 297

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
 Frame = +2

Query: 458 CPEKHYWARGELC--CQMCQPGTFLVKDCDQ-HGKAARCDPCKQGVSFSPDYHSRPHCES 628
           C E  YW +   C  CQ+C PG  L KDC    G  A C  C      S   H R  C++
Sbjct: 3   CQENEYWDQWGRCVTCQLCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR--CQT 60

Query: 629 CRHCNSGLFVQ--NCTLTANAKC--ACPEGWQ------CRDKECTECDGPAQTP 760
           C  C     +Q  NCT T+NA C    P  +Q       +D+EC  C    QTP
Sbjct: 61  CITCAVINRIQQANCTATSNAICGNCLPRFYQKTRIGGLQDQECIPC--TKQTP 112


>ref|NP_777099.1| tumor necrosis factor receptor superfamily member 1A precursor [Bos
           taurus].
          Length = 471

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
 Frame = +2

Query: 458 CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
           CP+  Y       +CC  C  GT+L  DC   G+   C  C  G   + + H R  C SC
Sbjct: 44  CPQGKYNHPQNSTICCTKCHKGTYLYNDCPGPGRDTDCRVCAPGTYTALENHLR-RCLSC 102

Query: 632 RHCNSGLF---VQNCTLTANAKCAC-----PEGWQCRDKECTEC 739
             C   +F   +  C +  +  C C      E W      C  C
Sbjct: 103 SRCRDEMFQVEISPCVVDRDTVCGCRKNQYREYWGETGFRCLNC 146


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,689,189
Number of extensions: 2074237
Number of successful extensions: 11716
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11509
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854464.1| PREDICTED: similar to Tumor necrosis factor rec...   377   e-104
Alignment   gi|XP_546752.2| PREDICTED: similar to Tumor necrosis factor rec...    63   7e-10
Alignment   gi|NP_001002982.1| tumor necrosis factor receptor superfamily m...    61   2e-09
Alignment   gi|XP_854474.1| PREDICTED: similar to Tumor necrosis factor rec...    60   5e-09
Alignment   gi|XP_543595.2| PREDICTED: similar to Tumor necrosis factor rec...    60   6e-09
Alignment   gi|XP_549666.2| PREDICTED: similar to Tumor necrosis factor rec...    59   1e-08
Alignment   gi|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor...    54   4e-07
Alignment   gi|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor...    54   4e-07

>ref|XP_854464.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
            member 7 precursor (CD27L receptor) (T-cell activation
            antigen CD27) (T14) [Canis familiaris].
          Length = 271

 Score =  377 bits (968), Expect = e-104
 Identities = 175/270 (64%), Positives = 204/270 (75%), Gaps = 22/270 (8%)
 Frame = +2

Query: 380  MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
            MAR P CWLW+LGTLAGLSATPAP+ CPEKHY  +GE CCQMC+PGTFLVKDC++HG+AA
Sbjct: 1    MARPPPCWLWILGTLAGLSATPAPKRCPEKHYQVQGERCCQMCKPGTFLVKDCERHGEAA 60

Query: 560  RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
            +CDPC  G SFSPD+H+R HCESCRHCNSGL ++NCTLTANA+C CP+GW+CRDK+CTEC
Sbjct: 61   QCDPCIPGASFSPDHHARRHCESCRHCNSGLLIRNCTLTANAECDCPKGWKCRDKQCTEC 120

Query: 740  DGPAQ---------TPGPHPQPSHSPYAE-----------AIPEARTSRYTQTLADVGQV 859
            D P+            GPH QP+H PYA+            + E  T R  QTLAD   +
Sbjct: 121  DPPSNPLLIPHPSPARGPHLQPTHLPYAKIKFQATLCPVTEMQETSTVRQVQTLADFRWL 180

Query: 860  PVPTISTYLSSQR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPA 1033
            P P +ST+   QR  CSS+CIRI V+LSG+FLAFT++GALF +QQRKY LN  E PV P 
Sbjct: 181  PAPALSTHWPPQRSLCSSDCIRIFVILSGMFLAFTMIGALFFHQQRKYRLNKEEYPVVPV 240

Query: 1034 EPCPYSYPREEEGSAIPIQEDYRKPELASY 1123
            EPCPYS PREEEG AIPIQEDYRKPE ASY
Sbjct: 241  EPCPYSCPREEEGGAIPIQEDYRKPEPASY 270


>ref|XP_546752.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
           member 25 precursor (WSL-1 protein) (Apoptosis-mediating
           receptor DR3) (Apoptosis-mediating receptor TRAMP)
           (Death domain receptor 3) (WSL protein) (Apoptosis
           inducing receptor AIR) (Apo-3) (Lym... [Canis
           familiaris].
          Length = 422

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
 Frame = +2

Query: 371 AGAMARSPLCWLWVLGTLA--GLSATPAPQ-SCPEKHYWARGELCCQMCQPGTFLVKDCD 541
           A   A  P   + +L  L   G  +TPAP+ +C        G  CC+ C  G +L   C 
Sbjct: 10  AAVAAVMPFLQVLLLALLGAQGQHSTPAPRCNCAYNFQKRNGLFCCKGCPAGHYLKGPCL 69

Query: 542 QHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW- 709
           +    A C PC  G   + + H    C  C+ C+   S + ++NC++ A+  C C  GW 
Sbjct: 70  KPCGPAICLPCPWGTFLARENHHETRCTRCQACDEEVSQVALKNCSMVADTHCGCEPGWF 129

Query: 710 -QCRDKEC 730
            +C  K C
Sbjct: 130 LECLVKPC 137


>ref|NP_001002982.1| tumor necrosis factor receptor superfamily member 5 precursor
           [Canis lupus familiaris].
          Length = 274

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
 Frame = +2

Query: 398 CWLWVLGTLAGLSATPAPQS-CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
           C  W  G+L   +  P P++ C EK Y    + CC MC PG  LV DC  H     C  C
Sbjct: 8   CLFW--GSLL-TTVYPEPRTACREKQYLVDSQ-CCNMCPPGEKLVNDC-LHTIDTECTRC 62

Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 739
           + G  F   +++  HC   ++C  N GL V+   T   +  C C EG  C +  C  C
Sbjct: 63  QTG-EFLDTWNAERHCHQHKYCDPNLGLHVEKEGTSETDTTCTCDEGLHCTNAACESC 119


>ref|XP_854474.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
            member 1A precursor (p60) (TNF-R1) (TNF-RI) (p55)
            (CD120a) [Canis familiaris].
          Length = 452

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 17/226 (7%)
 Frame = +2

Query: 458  CPEKHYWARGE--LCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRP--HCE 625
            CP+  Y    +  +CC  C  GT+L  DC   G    C  C+ G   + + H R    C 
Sbjct: 44   CPQGKYIHPQDDSICCTKCHKGTYLYNDCPGPGLDTDCRECENGTFTASENHLRQCLSCS 103

Query: 626  SCRHCNSGLFVQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQP 778
             CR   + + +  CT+  +  C C +      W     +C  C    +G  Q      Q 
Sbjct: 104  KCRKEMNQVEISPCTVYRDTVCGCRKNQYRFYWSETLFQCNNCSLCLNGTVQISCQEKQN 163

Query: 779  S----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGVF 946
            +    H+ +     E  +    +   + G++ +P + T    Q   S  +  LV+L G+ 
Sbjct: 164  TICTCHAGFFLREHECVSCVNCKKNTECGKLCLPPVETVKVPQDPGSTVLLPLVILFGIC 223

Query: 947  LAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIP 1084
            +    +G +  YQ++K  L +  C     +P P      E  +++P
Sbjct: 224  VLSFSIGLMCRYQRQKPRLFSIVC----GKPTPTKEGEPESRASVP 265


>ref|XP_543595.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
           member 6 precursor (FASL receptor) (Apoptosis-mediating
           surface antigen FAS) (Apo-1 antigen) (CD95 antigen)
           [Canis familiaris].
          Length = 571

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
 Frame = +2

Query: 476 WARG------ELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 637
           W RG       L  ++ + GT    DC  +   + C PC++G  ++   H  P C  C  
Sbjct: 29  WPRGVKAQVTSLSYKVLRSGTRKESDCTSYAGKSHCVPCQEGEEYTDKTHLSPKCRRCGI 88

Query: 638 CNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 742
           C+   GL V+ NCT T N KC C   + C    C  C+
Sbjct: 89  CDGEHGLEVERNCTQTRNTKCRCKPNFYCDVSPCEHCN 126


>ref|XP_549666.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
           member 14 precursor (Herpesvirus entry mediator A)
           (Tumor necrosis factor receptor-like 2) (TR2) [Canis
           familiaris].
          Length = 272

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
 Frame = +2

Query: 377 AMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
           A A S   +L +LG+L    AT AP  C E+ Y    E CC  C PG + VK+       
Sbjct: 18  ADALSQALYLLLLGSLPWALAT-AP--CKEEEYPVGSE-CCPKCSPG-YRVKEACGELTG 72

Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFV---QNCTLTANAKCACPEGWQC---R 718
             C PC  G +++   +    C  CR C+  + +   Q C+ T N  CAC +G  C    
Sbjct: 73  TVCAPCDPG-TYTAHLNGLSECLQCRMCDPAMALVTRQKCSRTENTVCACAQGHFCISEN 131

Query: 719 DKECTEC 739
           + +C EC
Sbjct: 132 EDDCVEC 138


>ref|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor isoform 2 [Canis
           familiaris].
          Length = 267

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
 Frame = +2

Query: 359 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 502
           R  WA +   +A  PL  + + G LA   A P        Q+C ++   +Y  + ++CC 
Sbjct: 2   RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60

Query: 503 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 673
            C PGT +  +C +  +   C  C +  S++  ++    C+ CR C+  L  +    CT 
Sbjct: 61  RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118

Query: 674 TANAKCACPEGWQC--RDKECTECDGPAQTP 760
               +C C  G  C   D EC  C+  +  P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149


>ref|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor isoform 1 [Canis
           familiaris].
          Length = 421

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
 Frame = +2

Query: 359 RTSWAGA---MARSPLCWLWVLGTLAGLSATP------APQSCPEK---HYWARGELCCQ 502
           R  WA +   +A  PL  + + G LA   A P        Q+C ++   +Y  + ++CC 
Sbjct: 2   RLPWAASPCGLAWGPLI-VGLCGLLAASQARPDLPYHTENQTCQDREKEYYEPKHQVCCS 60

Query: 503 MCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQN---CTL 673
            C PGT +  +C +  +   C  C +  S++  ++    C+ CR C+  L  +    CT 
Sbjct: 61  RCPPGTHVSVECSR-SQDTVCAMCPEN-SYNEHWNHLSICQLCRPCDQMLGFEETVPCTS 118

Query: 674 TANAKCACPEGWQC--RDKECTECDGPAQTP 760
               +C C  G  C   D EC  C+  +  P
Sbjct: 119 RQKTQCRCQPGMFCVHWDTECVHCEPLSDCP 149


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,251,107
Number of extensions: 2136369
Number of successful extensions: 12981
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12558
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001233.1| CD27 antigen precursor [Homo sapiens].               377   e-104
Alignment   gi|NP_001241.1| tumor necrosis factor receptor superfamily memb...    77   4e-14
Alignment   gi|NP_690593.1| tumor necrosis factor receptor superfamily memb...    74   4e-13
Alignment   gi|NP_690611.1| tumor necrosis factor receptor superfamily memb...    70   6e-12
Alignment   gi|NP_690610.1| tumor necrosis factor receptor superfamily memb...    70   6e-12
Alignment   gi|NP_000034.1| tumor necrosis factor receptor superfamily memb...    70   6e-12
Alignment   gi|NP_001056.1| tumor necrosis factor receptor superfamily memb...    55   1e-07
Alignment   gi|NP_001034753.1| tumor necrosis factor receptor superfamily m...    54   3e-07
Alignment   gi|NP_683867.1| tumor necrosis factor receptor superfamily memb...    54   3e-07
Alignment   gi|NP_683866.1| tumor necrosis factor receptor superfamily memb...    54   3e-07

>ref|NP_001233.1| CD27 antigen precursor [Homo sapiens].
          Length = 260

 Score =  377 bits (967), Expect = e-104
 Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 11/257 (4%)
 Frame = +2

Query: 380  MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
            MAR    WL VLGTL GLSATPAP+SCPE+HYWA+G+LCCQMC+PGTFLVKDCDQH KAA
Sbjct: 1    MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 60

Query: 560  RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
            +CDPC  GVSFSPD+H+RPHCESCRHCNSGL V+NCT+TANA+CAC  GWQCRDKECTEC
Sbjct: 61   QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 120

Query: 740  D---------GPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSS 892
            D           +Q   PHPQP+H PY   + EART+ + QTLAD  Q+P  T+ST+   
Sbjct: 121  DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 180

Query: 893  QR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREE 1066
            QR  CSS+ IRILV+ SG+FL FT+ GALFL+Q+RKY  N GE PV PAEPC YS PREE
Sbjct: 181  QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE 240

Query: 1067 EGSAIPIQEDYRKPELA 1117
            EGS IPIQEDYRKPE A
Sbjct: 241  EGSTIPIQEDYRKPEPA 257


>ref|NP_001241.1| tumor necrosis factor receptor superfamily member 5 isoform 1
            precursor [Homo sapiens].
          Length = 277

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 20/258 (7%)
 Frame = +2

Query: 380  MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
            M R PL C LW  G L        P +C EK Y    + CC +CQPG  LV DC +  + 
Sbjct: 1    MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56

Query: 557  ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 727
              C PC +   F   ++   HC   ++C  N GL V Q  T   +  C C EGW C  + 
Sbjct: 57   TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115

Query: 728  CTECD-GPAQTPG------------PHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVP 868
            C  C    + +PG               +P    +   +  A    +  T  +   + V 
Sbjct: 116  CESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQ 175

Query: 869  TISTYLSSQRCS-SECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCP 1045
               T  +   C   + +R LVV+  +F     +  + ++ ++     T + P    EP  
Sbjct: 176  QAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQE 235

Query: 1046 YSYPREEEGS--AIPIQE 1093
             ++P +  GS  A P+QE
Sbjct: 236  INFPDDLPGSNTAAPVQE 253


>ref|NP_690593.1| tumor necrosis factor receptor superfamily member 5 isoform 2
           precursor [Homo sapiens].
          Length = 203

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 45/124 (36%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
 Frame = +2

Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
           M R PL C LW  G L        P +C EK Y    + CC +CQPG  LV DC +  + 
Sbjct: 1   MVRLPLQCVLW--GCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE- 56

Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFV-QNCTLTANAKCACPEGWQCRDKE 727
             C PC +   F   ++   HC   ++C  N GL V Q  T   +  C C EGW C  + 
Sbjct: 57  TECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEA 115

Query: 728 CTEC 739
           C  C
Sbjct: 116 CESC 119


>ref|NP_690611.1| tumor necrosis factor receptor superfamily member 6 isoform 3
           precursor [Homo sapiens].
          Length = 220

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
           G+ C + C PG    +DC  +G    C PC++G  ++   H    C  CR C+ G  ++ 
Sbjct: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115

Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
             NCT T N KC C   + C    C  CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144


>ref|NP_690610.1| tumor necrosis factor receptor superfamily member 6 isoform 2
           precursor [Homo sapiens].
          Length = 314

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
           G+ C + C PG    +DC  +G    C PC++G  ++   H    C  CR C+ G  ++ 
Sbjct: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115

Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
             NCT T N KC C   + C    C  CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144


>ref|NP_000034.1| tumor necrosis factor receptor superfamily member 6 isoform 1
           precursor [Homo sapiens].
          Length = 335

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 485 GELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQ- 661
           G+ C + C PG    +DC  +G    C PC++G  ++   H    C  CR C+ G  ++ 
Sbjct: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115

Query: 662 --NCTLTANAKCACPEGWQCRDKECTECD 742
             NCT T N KC C   + C    C  CD
Sbjct: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCD 144


>ref|NP_001056.1| tumor necrosis factor receptor superfamily member 1A precursor [Homo
            sapiens].
          Length = 455

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 19/206 (9%)
 Frame = +2

Query: 458  CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
            CP+  Y       +CC  C  GT+L  DC   G+   C  C+ G   + + H R HC SC
Sbjct: 44   CPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLR-HCLSC 102

Query: 632  RHCNSGL---FVQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQ 775
              C   +    + +CT+  +  C C +      W     +C  C    +G         Q
Sbjct: 103  SKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQ 162

Query: 776  PS----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGV 943
             +    H+ +     E  +    +   +  ++ +P I     ++   +  +  LV+  G+
Sbjct: 163  NTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIENVKGTEDSGTTVLLPLVIFFGL 222

Query: 944  -FLAFTVVGALFLYQQRKYGLNTGEC 1018
              L+   +G ++ YQ+ K  L +  C
Sbjct: 223  CLLSLLFIGLMYRYQRWKSKLYSIVC 248


>ref|NP_001034753.1| tumor necrosis factor receptor superfamily member 25 isoform 12
           precursor [Homo sapiens].
          Length = 181

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
           G  A +    L +LG  A          C    +   G  CC+ C  G +L   C +   
Sbjct: 7   GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66

Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
            + C  C Q    + + H    C  C+ C+   S + ++NC+  A+ +C C  GW  +C+
Sbjct: 67  NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126

Query: 719 DKEC 730
             +C
Sbjct: 127 VSQC 130


>ref|NP_683867.1| tumor necrosis factor receptor superfamily member 25 isoform 3
           precursor [Homo sapiens].
          Length = 380

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
           G  A +    L +LG  A          C    +   G  CC+ C  G +L   C +   
Sbjct: 7   GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66

Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
            + C  C Q    + + H    C  C+ C+   S + ++NC+  A+ +C C  GW  +C+
Sbjct: 67  NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126

Query: 719 DKEC 730
             +C
Sbjct: 127 VSQC 130


>ref|NP_683866.1| tumor necrosis factor receptor superfamily member 25 isoform 1
           precursor [Homo sapiens].
          Length = 426

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 374 GAMARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGK 553
           G  A +    L +LG  A          C    +   G  CC+ C  G +L   C +   
Sbjct: 7   GCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66

Query: 554 AARCDPCKQGVSFSPDYHSRPHCESCRHCN---SGLFVQNCTLTANAKCACPEGW--QCR 718
            + C  C Q    + + H    C  C+ C+   S + ++NC+  A+ +C C  GW  +C+
Sbjct: 67  NSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQ 126

Query: 719 DKEC 730
             +C
Sbjct: 127 VSQC 130


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,089,763
Number of extensions: 2100969
Number of successful extensions: 11521
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 11259
Number of HSP's successfully gapped: 16
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001028298.1| CD27 antigen isoform a [Mus musculus].            307   1e-83
Alignment   gi|NP_001036029.1| CD27 antigen isoform b [Mus musculus].             99   7e-21
Alignment   gi|NP_032013.2| tumor necrosis factor receptor superfamily memb...    76   5e-14
Alignment   gi|NP_733805.1| tumor necrosis factor receptor superfamily memb...    68   2e-11
Alignment   gi|NP_733804.1| tumor necrosis factor receptor superfamily memb...    68   2e-11
Alignment   gi|NP_733803.2| tumor necrosis factor receptor superfamily memb...    68   2e-11
Alignment   gi|NP_035741.2| tumor necrosis factor receptor superfamily memb...    68   2e-11
Alignment   gi|NP_035789.1| tumor necrosis factor receptor superfamily memb...    65   2e-10
Alignment   gi|NP_034866.1| tumor necrosis factor receptor superfamily memb...    55   2e-07
Alignment   gi|NP_076169.2| tumor necrosis factor receptor superfamily memb...    55   2e-07

>ref|NP_001028298.1| CD27 antigen isoform a [Mus musculus].
          Length = 250

 Score =  307 bits (787), Expect = 1e-83
 Identities = 148/259 (57%), Positives = 175/259 (67%), Gaps = 11/259 (4%)
 Frame = +2

Query: 380  MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
            MA  P  WL +LGTL GLSAT AP SCP+KHYW  G LCC+MC+PGTF VKDC+Q   AA
Sbjct: 1    MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEPGTFFVKDCEQDRTAA 60

Query: 560  RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
            +CDPC  G SFSPDYH+RPHCESCRHCNSG  ++NCT+TANA+C+C + WQCRD+ECTEC
Sbjct: 61   QCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECSCSKNWQCRDQECTEC 120

Query: 740  D---------GPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSS 892
            D          P++TP P P P+H P+    P     R         Q+P  T+ +  SS
Sbjct: 121  DPPLNPALTRQPSETPSPQPPPTHLPHGTEKPSWPLHR---------QLPNSTVYSQRSS 171

Query: 893  QR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREE 1066
             R  CSS+CIRI V  S +FL F +   LF +Q+R +G N     V P EPCPYS PREE
Sbjct: 172  HRPLCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAV-PEEPCPYSCPREE 230

Query: 1067 EGSAIPIQEDYRKPELASY 1123
            EGSAIPIQEDYRKPE A Y
Sbjct: 231  EGSAIPIQEDYRKPEPAFY 249


>ref|NP_001036029.1| CD27 antigen isoform b [Mus musculus].
          Length = 146

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 53/92 (57%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
 Frame = +2

Query: 854  QVPVPTISTYLSSQR--CSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVA 1027
            Q+P  T+ +  SS R  CSS+CIRI V  S +FL F +   LF +Q+R +G N     V 
Sbjct: 55   QLPNSTVYSQRSSHRPLCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAV- 113

Query: 1028 PAEPCPYSYPREEEGSAIPIQEDYRKPELASY 1123
            P EPCPYS PREEEGSAIPIQEDYRKPE A Y
Sbjct: 114  PEEPCPYSCPREEEGSAIPIQEDYRKPEPAFY 145



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 30/45 (66%), Positives = 34/45 (75%)
 Frame = +2

Query: 380 MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQP 514
           MA  P  WL +LGTL GLSAT AP SCP+KHYW  G LCC+MC+P
Sbjct: 1   MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEP 45


>ref|NP_032013.2| tumor necrosis factor receptor superfamily member 6 isoform 1
           precursor [Mus musculus].
          Length = 327

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +2

Query: 452 QSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
           ++C E  Y   G  CCQ CQPG   V+DC  +G    C PC +G  +    H    C  C
Sbjct: 42  KNCSEGLYQG-GPFCCQPCQPGKKKVEDCKMNGGTPTCAPCTEGKEYMDKNHYADKCRRC 100

Query: 632 RHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTEC 739
             C+   GL V+ NCTLT N KC C   + C    C  C
Sbjct: 101 TLCDEEHGLEVETNCTLTQNTKCKCKPDFYCDSPGCEHC 139


>ref|NP_733805.1| tumor necrosis factor receptor superfamily member 5 isoform 4 [Mus
           musculus].
          Length = 222

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +2

Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
           LC LW  G L          +C +K Y   G+ CC +CQPG+ L   C    K  +C PC
Sbjct: 7   LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62

Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
             G  FS  ++    C   RHC  N GL V+   T  ++  C C EG  C  K+C  C
Sbjct: 63  DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119


>ref|NP_733804.1| tumor necrosis factor receptor superfamily member 5 isoform 2 [Mus
           musculus].
          Length = 203

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +2

Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
           LC LW  G L          +C +K Y   G+ CC +CQPG+ L   C    K  +C PC
Sbjct: 7   LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62

Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
             G  FS  ++    C   RHC  N GL V+   T  ++  C C EG  C  K+C  C
Sbjct: 63  DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119


>ref|NP_733803.2| tumor necrosis factor receptor superfamily member 5 isoform 5 [Mus
           musculus].
          Length = 260

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +2

Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
           LC LW  G L          +C +K Y   G+ CC +CQPG+ L   C    K  +C PC
Sbjct: 7   LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62

Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
             G  FS  ++    C   RHC  N GL V+   T  ++  C C EG  C  K+C  C
Sbjct: 63  DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119


>ref|NP_035741.2| tumor necrosis factor receptor superfamily member 5 isoform 1 [Mus
           musculus].
          Length = 289

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +2

Query: 395 LCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPC 574
           LC LW  G L          +C +K Y   G+ CC +CQPG+ L   C    K  +C PC
Sbjct: 7   LCALW--GCLLTAVHLGQCVTCSDKQYLHDGQ-CCDLCQPGSRLTSHCTALEKT-QCHPC 62

Query: 575 KQGVSFSPDYHSRPHCESCRHC--NSGLFVQN-CTLTANAKCACPEGWQCRDKECTEC 739
             G  FS  ++    C   RHC  N GL V+   T  ++  C C EG  C  K+C  C
Sbjct: 63  DSG-EFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEAC 119


>ref|NP_035789.1| tumor necrosis factor receptor superfamily member 4 precursor [Mus
           musculus].
          Length = 272

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
 Frame = +2

Query: 404 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
           L +LG   G++A     +C  KH +  G  CC+ CQPG  +V  CD H +   C PC+ G
Sbjct: 11  LLLLGLTLGVTARRL--NCV-KHTYPSGHKCCRECQPGHGMVSRCD-HTRDTLCHPCETG 66

Query: 584 -VSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDK-------ECTEC 739
             + + +Y +   C  C H +     QNCT T +  C C  G Q R         +C  C
Sbjct: 67  FYNEAVNYDTCKQCTQCNHRSGSELKQNCTPTQDTVCRCRPGTQPRQDSGYKLGVDCVPC 126

Query: 740 DGPAQTPG 763
                +PG
Sbjct: 127 PPGHFSPG 134


>ref|NP_034866.1| tumor necrosis factor receptor superfamily member 3 precursor [Mus
           musculus].
          Length = 415

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
 Frame = +2

Query: 383 ARSP--LCWLWVLGTLAGLSATPAPQSCP-------------EKHYWARGELCCQMCQPG 517
           A SP  L W  +L  L+GL     PQ  P             +++Y    ++CC  C PG
Sbjct: 6   ASSPCGLAWGPLLLGLSGLLVASQPQLVPPYRIENQTCWDQDKEYYEPMHDVCCSRCPPG 65

Query: 518 TFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRHCNSGL---FVQNCTLTANAK 688
            F+   C +  +   C  C    S++  ++    C+ CR C+  L    V  CT    A+
Sbjct: 66  EFVFAVCSR-SQDTVCKTCPHN-SYNEHWNHLSTCQLCRPCDIVLGFEEVAPCTSDRKAE 123

Query: 689 CACPEGWQC--RDKECTECD 742
           C C  G  C   D EC  C+
Sbjct: 124 CRCQPGMSCVYLDNECVHCE 143


>ref|NP_076169.2| tumor necrosis factor receptor superfamily member 22 [Mus
           musculus].
          Length = 180

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
 Frame = +2

Query: 458 CPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESCRH 637
           CP   YW++ ++CC+ C  GTF+   C+      +C+ C  G +F+   +    C  C  
Sbjct: 48  CPAGEYWSK-DVCCKNCSAGTFVKAPCEIPHTQGQCEKCHPG-TFTEKDNYLDACILCST 105

Query: 638 CNSGL-FVQNCTLTANAKCACPEGWQCRD-------KECTEC 739
           C+     V +C+ T++ KC C  G    D       + CT+C
Sbjct: 106 CDKDQEMVADCSATSDRKCQCRTGLYYYDPKFPESCRPCTKC 147


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,012,019
Number of extensions: 1729358
Number of successful extensions: 9449
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9220
Number of HSP's successfully gapped: 19
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa].        544   e-155
Alignment   gi|NP_999004.1| tumor necrosis factor receptor superfamily memb...    80   2e-15
Alignment   gi|XP_003127580.1| PREDICTED: tumor necrosis factor receptor su...    64   1e-10
Alignment   gi|NP_999359.1| tumor necrosis factor receptor superfamily memb...    61   2e-09
Alignment   gi|XP_003126595.1| PREDICTED: tumor necrosis factor receptor su...    56   4e-08
Alignment   gi|NP_999134.1| tumor necrosis factor receptor superfamily memb...    53   4e-07
Alignment   gi|XP_003131613.2| PREDICTED: tumor necrosis factor receptor su...    49   5e-06
Alignment   gi|XP_003127545.1| PREDICTED: tumor necrosis factor receptor su...    49   5e-06
Alignment   gi|NP_001090910.2| tumor necrosis factor receptor superfamily m...    49   6e-06

>ref|XP_003126594.1| PREDICTED: CD27 antigen-like [Sus scrofa].
          Length = 249

 Score =  544 bits (1401), Expect = e-155
 Identities = 249/249 (100%), Positives = 249/249 (100%)
 Frame = +2

Query: 380  MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 559
            MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA
Sbjct: 1    MARSPLCWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAA 60

Query: 560  RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 739
            RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC
Sbjct: 61   RCDPCKQGVSFSPDYHSRPHCESCRHCNSGLFVQNCTLTANAKCACPEGWQCRDKECTEC 120

Query: 740  DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR 919
            DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR
Sbjct: 121  DGPAQTPGPHPQPSHSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIR 180

Query: 920  ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 1099
            ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY
Sbjct: 181  ILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPREEEGSAIPIQEDY 240

Query: 1100 RKPELASYL 1126
            RKPELASYL
Sbjct: 241  RKPELASYL 249


>ref|NP_999004.1| tumor necrosis factor receptor superfamily member 6 precursor [Sus
           scrofa].
          Length = 332

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
 Frame = +2

Query: 431 LSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHS 610
           L+ T     CPE  +   G+ CCQ C PG     DC   G A +C PC +G  ++   H 
Sbjct: 37  LNITKRESECPEGQH-REGQFCCQPCPPGKRKHADCTSPGGAPQCVPCSEGEDYTDKNHH 95

Query: 611 RPHCESCRHCNS--GLFVQ-NCTLTANAKCACPEGWQCRDKECTECD 742
              C  CR C+   GL V+ NCT T N KC C   + C   +C  C+
Sbjct: 96  SSKCRRCRVCDGEHGLEVEKNCTRTQNTKCRCKPNFFCHTSQCEHCN 142


>ref|XP_003127580.1| PREDICTED: tumor necrosis factor receptor superfamily member 25-like
            [Sus scrofa].
          Length = 415

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 22/257 (8%)
 Frame = +2

Query: 404  LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
            L +L    G  +TP+       +    G +CC+ C  G +L   C +   AA C PC QG
Sbjct: 17   LLLLPGARGQGSTPSAHCDCVPNQKRNGLVCCRGCPAGHYLKAPCTKPCGAATCLPCPQG 76

Query: 584  VSFSPDYHSRPHCESCRHCNS---GLFVQNCTLTANAKCACPEGW-------QC------ 715
               + + H    C  C+ C+     + ++NC+  A+  C C  GW       QC      
Sbjct: 77   TFLAWENHHETRCARCQACDEQAPQVALKNCSAVADTHCGCRPGWFMECVVSQCLLGSPF 136

Query: 716  RDKECTECDGPAQTPGPHPQPSHSPYAEA-IP---EARTSRYTQTLADVGQVPVPTISTY 883
            R + CT+C G        P  S   +  A +P   E   S  +   + +G  P P ++  
Sbjct: 137  RCRRCTDC-GALHRHTQEPCSSKDAHCGACLPGFYEHGNSCVSCPTSTLGSCPEPCVAV- 194

Query: 884  LSSQRCSSECIRILVVLSGVFLAFTVVGALFLYQQRKYGLNTGECPVAPAEPCPYSYPRE 1063
                 C    +  + VL    +A  ++GA   Y  R+             +PC    P  
Sbjct: 195  -----CGWRHMFWVQVLLAGLVAPLLLGATLTYTYRR------------CQPCKAMVPAG 237

Query: 1064 EEG--SAIPIQEDYRKP 1108
            E G  +  P+Q     P
Sbjct: 238  EAGVEALTPLQATQLSP 254


>ref|NP_999359.1| tumor necrosis factor receptor superfamily member 5 precursor [Sus
           scrofa].
          Length = 278

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
 Frame = +2

Query: 380 MARSPL-CWLWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKA 556
           M R PL C LW  G          P SC E  Y      CC +C PG  LV  C +  + 
Sbjct: 1   MVRLPLKCLLW--GCFLTAVHPEPPTSCKENQYPTNSR-CCNLCPPGQKLVNHCTEVTE- 56

Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCRHC--NSGLFVQ-NCTLTANAKCACPEGWQCRDKE 727
             C PC     F   ++   HC   ++C  N GL VQ   T   +  C C EG  C +  
Sbjct: 57  TECLPCSSS-EFLATWNREKHCHQHKYCDPNLGLQVQREGTSKTDTTCVCSEGHHCTNSA 115

Query: 728 CTEC 739
           C  C
Sbjct: 116 CESC 119


>ref|XP_003126595.1| PREDICTED: tumor necrosis factor receptor superfamily member 3-like
           [Sus scrofa].
          Length = 421

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
 Frame = +2

Query: 443 PAPQSCPEK---HYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSR 613
           P  Q+C ++   +Y  +  +CC  C PGT +  +C  H +   C  C +  S++  ++  
Sbjct: 38  PENQTCQDQKREYYEPKHHVCCSRCPPGTHVSAEC-SHDQNTACATCPEN-SYNEHWNHL 95

Query: 614 PHCESCRHCNSGL---FVQNCTLTANAKCACPEGWQC--RDKECTECD 742
             C+ CR C+  L    V  CT    A+C C  G  C   D EC  C+
Sbjct: 96  SICQLCRPCDQMLGFMEVTPCTSKHKAQCRCQPGMFCVFWDSECVHCE 143


>ref|NP_999134.1| tumor necrosis factor receptor superfamily member 1A precursor [Sus
            scrofa].
          Length = 461

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 59/219 (26%), Positives = 83/219 (37%), Gaps = 23/219 (10%)
 Frame = +2

Query: 458  CPEKHYW--ARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQGVSFSPDYHSRPHCESC 631
            CP+  Y       +CC  C  GT+L  DC   G    C  C  G +F+   +    C SC
Sbjct: 44   CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNG-TFTASENHLTQCLSC 102

Query: 632  RHCNSGLF---VQNCTLTANAKCACPEG-----WQCRDKECTEC----DGPAQTPGPHPQ 775
              C S +    +  CT+  +  C C +      W     +C  C    +G  Q P    Q
Sbjct: 103  SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPCLEKQ 162

Query: 776  PS----HSPYAEAIPEARTSRYTQTLADVGQVPVPTISTYLSSQRCSSECIRILVVLSGV 943
             +    HS +     E   S      AD   +   T  T    Q   +  +  LV+  G+
Sbjct: 163  DTICNCHSGFFLRDKEC-VSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIFFGL 221

Query: 944  FLAFTV-VGALFLYQQRK---YGLNTGE-CPVAPAEPCP 1045
             LAF + VG    YQ+ K   Y +  G+  PV   EP P
Sbjct: 222  CLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP 260


>ref|XP_003131613.2| PREDICTED: tumor necrosis factor receptor superfamily member
           16-like [Sus scrofa].
          Length = 212

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
 Frame = +2

Query: 404 LWVLGTLAGLSATPAPQSCPEKHYWARGELCCQMCQPGTFLVKDCDQHGKAARCDPCKQG 583
           L +L  L G+S   A ++CP   Y   GE CC+ C  G  + + C  +     C+PC   
Sbjct: 15  LLLLLLLQGVSLGGAKETCPTGMYTHSGE-CCKACNLGEGVAQPCGANQTV--CEPCLDS 71

Query: 584 VSFSPDYHSRPHCESCRHCNSGLFVQN--CTLTANAKCACPEGW---------------- 709
           V+FS    +   C+ C  C  GL   +  C    +A C C  G+                
Sbjct: 72  VTFSDVVSATEPCKPCTEC-VGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE 130

Query: 710 -------QCRDKE---CTEC-DGPAQTPGPHPQP 778
                   C+DK+   C EC DG       H  P
Sbjct: 131 AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDP 164


>ref|XP_003127545.1| PREDICTED: tumor necrosis factor receptor superfamily member 4-like
            [Sus scrofa].
          Length = 278

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 68/249 (27%), Positives = 97/249 (38%), Gaps = 44/249 (17%)
 Frame = +2

Query: 485  GELCCQMCQPGTFLVKDCD--QHGKAARCDP--CKQGVSFSPDYHSRPHCESCRHCN--S 646
            G  CC+ CQPG  + + C   Q  + +RC P    + V++ P       C+ C  CN  S
Sbjct: 38   GRRCCKECQPGYGMERRCTDTQETECSRCKPGFYNEAVNYEP-------CKPCTQCNQRS 90

Query: 647  GLFV-QNCTLTANAKCACPEGWQCRD-------KECTECDGPAQTPGPHP--QP------ 778
            G  V Q CT T +  C C  G Q +D        +C  C     +PG     QP      
Sbjct: 91   GSEVKQRCTNTTDTVCGCRPGTQPQDGFGYKRGVDCVRCPPGHFSPGNDQACQPWTNCTL 150

Query: 779  -------SHSPYAEAIPEARTSRYT---QTLADVGQVPV--PTISTYLSSQRCSS----- 907
                   + S  ++A+ E R+   T   +T     + P   PT +   +SQ  S+     
Sbjct: 151  VGKRTLQAASNSSDAVCEDRSPPATPPQETQGPPARSPTARPTTAWPRTSQEPSTPHTES 210

Query: 908  ----ECIRILVVLSGVFLAFTVVGAL-FLYQQRKYGLNTGECPVAPAEPCPYSYPREEEG 1072
                E   +L +  G+ L   V   L  L   R + L     P AP  P        E G
Sbjct: 211  PKGPELAAVLGLGLGLVLLAPVAAVLVLLLHHRAWRL----LPNAPKPP-------RENG 259

Query: 1073 SAIPIQEDY 1099
              IPIQE++
Sbjct: 260  FRIPIQEEH 268


>ref|NP_001090910.2| tumor necrosis factor receptor superfamily member 1B [Sus scrofa].
          Length = 461

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
 Frame = +2

Query: 404 LWVLGTLAGLSATPAP------QSC--PEKHYW-ARGELCCQMCQPGTFLVKDCDQHGKA 556
           LW  G      A   P       SC  P K Y+  + ++CC  C PG  +   C++    
Sbjct: 16  LWAAGRAVPSQAVFMPYAPELGSSCRLPLKEYYDTKAQMCCSKCPPGFRIQTSCNRTSDT 75

Query: 557 ARCDPCKQGVSFSPDYHSRPHCESCR-HCNSG-LFVQNCTLTANAKCACPEGWQC---RD 721
             C  C+   +++  ++S   C SC   C+S  +  Q CT   N  C+C  GW C   R 
Sbjct: 76  V-CGSCESS-TYTQLWNSVSACFSCNSRCSSDQVETQACTPKQNRICSCKPGWYCTLGRQ 133

Query: 722 KECTEC 739
           + C  C
Sbjct: 134 EGCRLC 139


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,914,674
Number of extensions: 1350431
Number of successful extensions: 7491
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002498
         (1312 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1023   0.0  

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1023 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ccacattttgtcagaggcaggtggagacaagttaaatgcttggcgagcggaagagacaag 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664135 ccacattttgtcagaggcaggtggagacaagttaaatgcttggcgagcggaagagacaag 66664076

                                                                            
Query: 61       agaccacggagagactgctgtgatgggggcgcctttgaagagcgcaggtcctctgacaga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664075 agaccacggagagactgctgtgatgggggcgcctttgaagagcgcaggtcctctgacaga 66664016

                                                                            
Query: 121      gtttgccctttaatactctcccagcacccagcgcacggaaaaggggtgggggcagtggca 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66664015 gtttgccctttaatactctcccagcacccagcgcacggaaaaggggtgggggcagtggca 66663956

                                                                            
Query: 181      gtgacagtgactgcatgagtgagaaacagccacagtagcgcttcaacggcatcagaggtc 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663955 gtgacagtgactgcatgagtgagaaacagccacagtagcgcttcaacggcatcagaggtc 66663896

                                                                            
Query: 241      ggcctgccacctgaggggggcaactcccagaagacctgcctgggaggtgcaaagaagaga 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663895 ggcctgccacctgaggggggcaactcccagaagacctgcctgggaggtgcaaagaagaga 66663836

                                                                            
Query: 301      caccagcacccagctggggaggtgccagctcccccaaggccacagctggggcacaggaag 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663835 caccagcacccagctggggaggtgccagctcccccaaggccacagctggggcacaggaag 66663776

                                                                            
Query: 361      aacttcctgggcaggggccatggcccggtcacctctctgctggctgtgggttctgggtac 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663775 aacttcctgggcaggggccatggcccggtcacctctctgctggctgtgggttctgggtac 66663716

                                                                            
Query: 421      cctggcagggctctccgctaccccagccccccagagctgtccagagaagcactactgggc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663715 cctggcagggctctccgctaccccagccccccagagctgtccagagaagcactactgggc 66663656

                                                    
Query: 481      tcggggcgaactgtgctgccagatgtgccagccagg 516
                ||||||||||||||||||||||||||||||||||||
Sbjct: 66663655 tcggggcgaactgtgctgccagatgtgccagccagg 66663620



 Score =  581 bits (293), Expect = e-163
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                            
Query: 1005     acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 1064
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659243 acaccggagaatgtccagtggcgccagcggagccttgtccttacagctaccccagggagg 66659184

                                                                            
Query: 1065     aggagggcagcgccatccccattcaggaagattaccgaaaaccagagctcgcttcctacc 1124
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659183 aggagggcagcgccatccccattcaggaagattaccgaaaaccagagctcgcttcctacc 66659124

                                                                            
Query: 1125     tctgagccagcgctccgcggaggagaagccatcactgccatcaagcccgagcttccatcc 1184
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659123 tctgagccagcgctccgcggaggagaagccatcactgccatcaagcccgagcttccatcc 66659064

                                                                            
Query: 1185     cacctcacccgacatccagggggatcgagagctggcacccccaacttcagcactacccct 1244
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 66659063 cacctcacccgacatccagggggatcgagagctggcacccccaatttcagcactacccct 66659004

                                                                            
Query: 1245     tcatcagaaccctttcccgtgtgcagacttgggaaactggnccatgtgccctttcgggac 1304
                |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct: 66659003 tcatcagaaccctttcccgtgtgcagacttgggaaactggccaatgtgccttttcgggac 66658944

                        
Query: 1305     tggtgtgt 1312
                ||||||||
Sbjct: 66658943 tggtgtgt 66658936



 Score =  305 bits (154), Expect = 3e-80
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                            
Query: 647      ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 706
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660294 ggtcttttcgttcaaaactgcaccctcactgccaacgccaagtgtgcctgccctgagggc 66660235

                                                                            
Query: 707      tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 766
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66660234 tggcagtgcagggacaaggagtgtacagagtgtgatggtccagcccagaccccaggccca 66660175

                                                  
Query: 767      cacccacaaccctcccactcaccttatgctgaag 800
                ||||||||||||||||||||||||||||||||||
Sbjct: 66660174 cacccacaaccctcccactcaccttatgctgaag 66660141



 Score =  264 bits (133), Expect = 1e-67
 Identities = 136/137 (99%)
 Strand = Plus / Minus

                                                                            
Query: 513      caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 572
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663442 caggaacgttcctggtgaaggactgtgaccagcacggaaaggctgctcgctgtgatccgt 66663383

                                                                            
Query: 573      gtaaacagggggtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 632
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66663382 gtaaacagggagtgtccttctcaccagactaccacagccggccccactgtgagagctgcc 66663323

                                 
Query: 633      ggcactgtaactctggt 649
                |||||||||||||||||
Sbjct: 66663322 ggcactgtaactctggt 66663306



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 891      cccaaaggtgcagctcggagtgcatccgcatccttgtggtcctctctggagtgtttcttg 950
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659586 cccaaaggtgcagctcggagtgcatccgcatccttgtggtcctctctggagtgtttcttg 66659527

                                                                      
Query: 951      ctttcaccgtagtcggagccctgttcctctatcaacaaagaaaatatggattaa 1004
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659526 ctttcaccgtagtcggagccctgttcctctatcaacaaagaaaatatggattaa 66659473



 Score =  182 bits (92), Expect = 3e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 799      agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 858
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66659942 agcaataccagaggccaggaccagccggtacactcagactctggctgacgtcgggcaggt 66659883

                                                
Query: 859      tcctgtcccaactatctccacctacttgtctt 890
                ||||||||||||||||||||||||||||||||
Sbjct: 66659882 tcctgtcccaactatctccacctacttgtctt 66659851


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,816,483
Number of extensions: 294
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 6
Length of query: 1312
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1291
Effective length of database: 2,808,413,156
Effective search space: 3625661384396
Effective search space used: 3625661384396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)