Animal-Genome cDNA 20110601C-002508

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].       684   0.0  
Alignment   gi|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus].       621   0.0  
Alignment   gi|NP_001069707.1| glutamate-rich WD repeat-containing protein ...    83   8e-17
Alignment   gi|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos tauru...    76   5e-14
Alignment   gi|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus].      72   6e-13
Alignment   gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li...    67   1e-12
Alignment   gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part...    67   1e-12
Alignment   gi|NP_001178407.1| transcription initiation factor TFIID subuni...    71   2e-12
Alignment   gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ...    71   2e-12
Alignment   gi|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked...    67   1e-11

>ref|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|NP_001029810.1| histone-binding protein RBBP7 [Bos taurus].
          Length = 425

 Score =  621 bits (1602), Expect(2) = 0.0
 Identities = 293/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIWQMAEN 406



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|NP_001069707.1| glutamate-rich WD repeat-containing protein 1 [Bos taurus].
          Length = 446

 Score = 83.2 bits (204), Expect(2) = 8e-17
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
 Frame = +1

Query: 643  DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV--VDA 816
            D      P     GH  EG+ L W+P + G LL+      I LW     P +G    VD 
Sbjct: 199  DEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLW----TPTDGGSWHVDQ 254

Query: 817  KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR-SNNTSKPSHSVDAHTAEVNC 993
            +  F GHT  VED+ W    +++F S + D  + IWD R + + +    +  AH  +VN 
Sbjct: 255  RP-FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNV 313

Query: 994  LSFNPYSEFILATGSADKTVALWDLKNLK--LKLHSFESHKDEIFQVQWSP 1140
            ++++    F+L +G  D  + +WDL+  K    + +F+ H   +  V+W P
Sbjct: 314  INWSHREPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHVAPVTSVEWHP 363



 Score = 22.7 bits (47), Expect(2) = 8e-17
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 1152 ILASSGTDRKLNVWDLS 1202
            + A+SG D ++  WDL+
Sbjct: 368  VFAASGADNQITQWDLA 384



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
 Frame = +1

Query: 628  HPSKPDPSGECNPDLR-LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 804
            H   P   G  + D R   GH +    L W+P       S S D +I +WDI A P +  
Sbjct: 240  HLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKAC 299

Query: 805  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            ++   T  T H   V  ++W    E    S  DD  L +WD R   +  P  +   H A 
Sbjct: 300  ML---TTATAHDGDVNVINWSH-REPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHVAP 355

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDL 1068
            V  + ++P    + A   AD  +  WDL
Sbjct: 356  VTSVEWHPQDSGVFAASGADNQITQWDL 383


>ref|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos taurus].
          Length = 423

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 48/158 (30%), Positives = 83/158 (52%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH++    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 249  PIVTLSGHKEAISSVLWSD--AEEICSASWDHTIKVWDVESG-------SLKSTLTGNK- 298

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 299  VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 358  LISGSLDNMVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 395


>ref|NP_001070358.1| peroxisomal biogenesis factor 7 [Bos taurus].
          Length = 323

 Score = 71.6 bits (174), Expect(2) = 6e-13
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            H +E Y + W+      L+ S S D T+ LWD    P  GK +     F GH +V+    
Sbjct: 110  HTQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD----PTVGKSL---CTFRGHESVIYSTI 162

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            W       F S + DQ L IWD +   T+     V AH AE+    +  Y+E ++ TG+ 
Sbjct: 163  WSPHIPGCFASSSGDQTLRIWDVK---TTGVRIVVPAHQAEILSCDWCKYNENLVVTGAV 219

Query: 1042 DKTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
            D ++  WDL+N++  +     H   I +V++SP
Sbjct: 220  DCSLRGWDLRNVQQPVFELLGHTYAIRRVKFSP 252



 Score = 21.2 bits (43), Expect(2) = 6e-13
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSK 1205
            H ++LAS   D  +  W+ SK
Sbjct: 254  HASVLASCSYDFTVRFWNFSK 274



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 41/145 (28%), Positives = 66/145 (45%)
 Frame = +1

Query: 679  RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 858
            RGH+   Y   W+P++ G   S+S D T+ +WD+       K    + +   H A +   
Sbjct: 152  RGHESVIYSTIWSPHIPGCFASSSGDQTLRIWDV-------KTTGVRIVVPAHQAEILSC 204

Query: 859  SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 1038
             W   +E+L  + A D  L  WD R  N  +P   +  HT  +  + F+P+   +LA+ S
Sbjct: 205  DWCKYNENLVVTGAVDCSLRGWDLR--NVQQPVFELLGHTYAIRRVKFSPFHASVLASCS 262

Query: 1039 ADKTVALWDLKNLKLKLHSFESHKD 1113
             D TV  W+       L + E H +
Sbjct: 263  YDFTVRFWNFSKPDPLLETVEHHTE 287



 Score = 53.9 bits (128), Expect(2) = 2e-07
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDH-------TICLWDISAVPKEGKVVDAKTIFTG 834
            LR   + GY   ++P L G L  A+  H       T+ + D     +    +     F  
Sbjct: 12   LRVPGRHGYAAEFSPYLPGRLACAASQHYGIAGSGTLLILD-----QNESGLRLFRSFDW 66

Query: 835  HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PY 1011
            +  +  DV+W   +E +  + + D  L +WDT     + P      HT EV  + ++   
Sbjct: 67   NDGLF-DVTWSENNEHVLVTCSGDGSLQLWDTA--RATGPLQVFKEHTQEVYSVDWSQTR 123

Query: 1012 SEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHM 1146
             E ++ +GS D+TV LWD   +   L +F  H+  I+   WSPH+
Sbjct: 124  GEQLVVSGSWDQTVKLWD-PTVGKSLCTFRGHESVIYSTIWSPHI 167



 Score = 20.4 bits (41), Expect(2) = 2e-07
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 1158 ASSGTDRKLNVWDL 1199
            ASS  D+ L +WD+
Sbjct: 172  ASSSGDQTLRIWDV 185


>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
          Length = 589

 Score = 66.6 bits (161), Expect(2) = 1e-12
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            LRGH    Y   +  + SG LLS S+D +I  WD+ +            ++ GH   V D
Sbjct: 338  LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389

Query: 856  --VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 1029
              +S H L+   F S + D+   +W   S + + P      H A+V+C+ F+P S + LA
Sbjct: 390  LDISPHSLY---FASASHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LA 442

Query: 1030 TGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            TGS DKTV LW  +     +  F  H+  +  + +SP+
Sbjct: 443  TGSTDKTVRLWSTQQGN-SVRLFTGHRGPVLSLAFSPN 479



 Score = 25.4 bits (54), Expect(2) = 1e-12
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 1155 LASSGTDRKLNVWDLS 1202
            LAS+G D++L +WDL+
Sbjct: 483  LASAGEDQRLKLWDLA 498



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 39/131 (29%), Positives = 68/131 (51%)
 Frame = +1

Query: 682  GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            GH  +   + ++PN S +L + S D T+ LW      ++G  V    +FTGH   V  ++
Sbjct: 424  GHLADVDCVKFHPN-SNYLATGSTDKTVRLWST----QQGNSV---RLFTGHRGPVLSLA 475

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            +    + L  S  +DQ+L +WD  S    K    +  HT  +  L+F+P S  ++A+ S 
Sbjct: 476  FSPNGKYL-ASAGEDQRLKLWDLASGTLYK---ELRGHTDNITSLTFSPDSS-LVASASM 530

Query: 1042 DKTVALWDLKN 1074
            D +V +WD+++
Sbjct: 531  DNSVRVWDIRS 541


>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
          Length = 265

 Score = 66.6 bits (161), Expect(2) = 1e-12
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            LRGH    Y   +  + SG LLS S+D +I  WD+ +            ++ GH   V D
Sbjct: 14   LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 65

Query: 856  --VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 1029
              +S H L+   F S + D+   +W   S + + P      H A+V+C+ F+P S + LA
Sbjct: 66   LDISPHSLY---FASASHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LA 118

Query: 1030 TGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            TGS DKTV LW  +     +  F  H+  +  + +SP+
Sbjct: 119  TGSTDKTVRLWSTQQGN-SVRLFTGHRGPVLSLAFSPN 155



 Score = 25.4 bits (54), Expect(2) = 1e-12
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 1155 LASSGTDRKLNVWDLS 1202
            LAS+G D++L +WDL+
Sbjct: 159  LASAGEDQRLKLWDLA 174



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 39/131 (29%), Positives = 68/131 (51%)
 Frame = +1

Query: 682  GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            GH  +   + ++PN S +L + S D T+ LW      ++G  V    +FTGH   V  ++
Sbjct: 100  GHLADVDCVKFHPN-SNYLATGSTDKTVRLWST----QQGNSV---RLFTGHRGPVLSLA 151

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            +    + L  S  +DQ+L +WD  S    K    +  HT  +  L+F+P S  ++A+ S 
Sbjct: 152  FSPNGKYL-ASAGEDQRLKLWDLASGTLYK---ELRGHTDNITSLTFSPDSS-LVASASM 206

Query: 1042 DKTVALWDLKN 1074
            D +V +WD+++
Sbjct: 207  DNSVRVWDIRS 217


>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
          Length = 800

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 52/158 (32%), Positives = 79/158 (50%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            L GH    YG S++P+ + +LLS+S+D T+ LW +       +       + GH   V D
Sbjct: 539  LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSL-------QTFTCLVGYKGHNYPVWD 590

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
              +   +   F S   D+   +W T   +  +P      H A+VNC  F+P S ++ ATG
Sbjct: 591  TQFSP-YGYYFVSGGHDRVARLWAT---DHYQPLRIFAGHLADVNCTRFHPNSNYV-ATG 645

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHMR 1149
            SAD+TV LWD+ N    +  F  HK  I  + +SP+ R
Sbjct: 646  SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSPNGR 682


>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, 100kDa [Bos taurus].
          Length = 800

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 52/158 (32%), Positives = 79/158 (50%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            L GH    YG S++P+ + +LLS+S+D T+ LW +       +       + GH   V D
Sbjct: 539  LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSL-------QTFTCLVGYKGHNYPVWD 590

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
              +   +   F S   D+   +W T   +  +P      H A+VNC  F+P S ++ ATG
Sbjct: 591  TQFSP-YGYYFVSGGHDRVARLWAT---DHYQPLRIFAGHLADVNCTRFHPNSNYV-ATG 645

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHMR 1149
            SAD+TV LWD+ N    +  F  HK  I  + +SP+ R
Sbjct: 646  SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSPNGR 682


>ref|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
            [Bos taurus].
          Length = 514

 Score = 66.6 bits (161), Expect(2) = 1e-11
 Identities = 43/152 (28%), Positives = 71/152 (46%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 864
            H+   + L WN      +LSA  D T  +WD           +AK +F  H+A   DV W
Sbjct: 265  HKGPIFALKWNKK-GNFILSAGVDKTTIIWD-------AHTGEAKQLFPFHSAPALDVDW 316

Query: 865  HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 1044
                 + F S + D  + +     +   +P  +   HT EVN + ++P    +LA+ S D
Sbjct: 317  Q--SNNTFASCSTDMCIHVCKLGQD---RPIKTFQGHTNEVNAIKWDPTGN-LLASCSDD 370

Query: 1045 KTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
             T+ +W +K     +H  ++H  EI+ ++WSP
Sbjct: 371  MTLKIWSMKQDNC-VHDLQAHNKEIYTIKWSP 401



 Score = 21.6 bits (44), Expect(2) = 1e-11
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 1122 PGSVVASHETILASSGTDRKLNVWDLSK 1205
            PG+   +   +LAS+  D  + +WD+ +
Sbjct: 404  PGTSNPNANLMLASASFDSTVRLWDVDR 431



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
 Frame = +1

Query: 661  NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEG--KVVDAKTIFTG 834
            N  + LRGH+ E +  +WNP +S  L S S D T  +W++S     G  ++V    I  G
Sbjct: 160  NKAVVLRGHESEVFICAWNP-VSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREG 218

Query: 835  HTAV-----VEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 999
               V     V  + W+    +L  + + D    IW    N  S    ++  H   +  L 
Sbjct: 219  GQDVPSNKDVTSLDWN-SEGTLLATGSYDGFARIWTKDGNLAS----TLGQHKGPIFALK 273

Query: 1000 FNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQW 1134
            +N    FIL+ G  DKT  +WD    + K   F  H      V W
Sbjct: 274  WNKKGNFILSAG-VDKTTIIWDAHTGEAK-QLFPFHSAPALDVDW 316



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
 Frame = +1

Query: 652  GECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIF 828
            G+  P    +GH  E   + W+P  +G+LL S SDD T+ +W   ++ ++  V D +   
Sbjct: 337  GQDRPIKTFQGHTNEVNAIKWDP--TGNLLASCSDDMTLKIW---SMKQDNCVHDLQ--- 388

Query: 829  TGHTAVVEDVSWHLLHES--------LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
              H   +  + W              +  S + D  + +WD    +     H++  H   
Sbjct: 389  -AHNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDV---DRGICIHTLTKHQEP 444

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            V  ++F+P   + LA+GS DK V +W+ +   L +HS+      IF+V W+
Sbjct: 445  VYSVAFSPDGRY-LASGSFDKCVHIWNTQTGAL-VHSYRG-TGGIFEVCWN 492


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,069,768
Number of extensions: 1151708
Number of successful extensions: 4791
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 4448
Number of HSP's successfully gapped: 124
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_864445.1| PREDICTED: similar to retinoblastoma binding pr...   684   0.0  
Alignment   gi|XP_864423.1| PREDICTED: similar to retinoblastoma binding pr...   684   0.0  
Alignment   gi|XP_851729.1| PREDICTED: similar to retinoblastoma binding pr...   684   0.0  
Alignment   gi|XP_864405.1| PREDICTED: similar to retinoblastoma binding pr...   684   0.0  
Alignment   gi|XP_857851.1| PREDICTED: similar to retinoblastoma binding pr...   621   0.0  
Alignment   gi|XP_537971.2| PREDICTED: similar to retinoblastoma binding pr...   621   0.0  
Alignment   gi|XP_849201.1| PREDICTED: similar to retinoblastoma binding pr...   619   0.0  
Alignment   gi|XP_848223.1| PREDICTED: similar to retinoblastoma binding pr...   619   0.0  
Alignment   gi|XP_858100.1| PREDICTED: similar to retinoblastoma binding pr...   617   0.0  
Alignment   gi|XP_535325.1| PREDICTED: similar to retinoblastoma binding pr...   613   0.0  

>ref|XP_864445.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 8
            [Canis familiaris].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|XP_864423.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 7
            [Canis familiaris].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|XP_851729.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 2
            [Canis familiaris].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|XP_864405.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 6
            [Canis familiaris].
          Length = 410

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIW 924
            SW+     +  SV++D  + +W
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVW 402



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDLK 1071
              S+NP   +++ + S D  + +W ++
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQME 405


>ref|XP_857851.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 4
            [Canis familiaris].
          Length = 425

 Score =  621 bits (1602), Expect(2) = 0.0
 Identities = 293/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIWQMAEN 406



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|XP_537971.2| PREDICTED: similar to retinoblastoma binding protein 7 isoform 1
            [Canis familiaris].
          Length = 405

 Score =  621 bits (1602), Expect(2) = 0.0
 Identities = 293/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIW 924
            SW+     +  SV++D  + IW
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIW 401



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|XP_849201.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 3
            [Canis familiaris].
          Length = 469

 Score =  619 bits (1596), Expect(2) = 0.0
 Identities = 289/321 (90%), Positives = 307/321 (95%)
 Frame = +1

Query: 181  FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLV 360
            F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD+++H LV
Sbjct: 51   FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLV 110

Query: 361  LGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEV 540
            LGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIKINHEGEV
Sbjct: 111  LGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIKINHEGEV 170

Query: 541  NRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNP 720
            NRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEGYGLSWN 
Sbjct: 171  NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNS 230

Query: 721  NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVA 900
            NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHESLFGSVA
Sbjct: 231  NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 290

Query: 901  DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLKNLK 1080
            DDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL+NLK
Sbjct: 291  DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 350

Query: 1081 LKLHSFESHKDEIFQVQWSPH 1143
            LKLH+FESHKDEIFQV WSPH
Sbjct: 351  LKLHTFESHKDEIFQVHWSPH 371



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 372  NETILASSGTDRRLNVWDLSKI 393



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 315 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 362

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 363 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 422

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 423 FSWNPNEPWVICSVSEDNIMQIWQMAEN 450



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 308  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 361

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 362  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 421

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 422  DFSWNPNEPWVICSVSEDNIMQIWQM 447


>ref|XP_848223.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 1
            [Canis familiaris].
          Length = 413

 Score =  619 bits (1595), Expect(2) = 0.0
 Identities = 303/328 (92%), Positives = 307/328 (93%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MAHKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQL             +   +FGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLL------------TMMLKFGGFGSVSGKIEIEIK 108

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIA KTPSSDVLVFDYTKHPSKPD SGECNPDLRLRGHQKEG
Sbjct: 109  INHEGEVNRARYMPQNPCIIARKTPSSDVLVFDYTKHPSKPDLSGECNPDLRLRGHQKEG 168

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 169  YGLSWNLNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 228

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSV DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 229  SLFGSVGDDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 288

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQ+QWSPH
Sbjct: 289  WDLRNLKLKLHSFESHKDEIFQIQWSPH 316



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 317  NETILASSGTDRRLNVWDLSKI 338



 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 260 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 307

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GH A + D
Sbjct: 308 IFQIQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHIAKISD 367

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 368 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 407



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 253  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 306

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  + W   +E++  S   D++L +WD ++      P  + D           H A+++
Sbjct: 307  EIFQIQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHIAKIS 366

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 367  DFSWNPNEPWVICSVSEDNIMQVWQM 392


>ref|XP_858100.1| PREDICTED: similar to retinoblastoma binding protein 7 isoform 9
            [Canis familiaris].
          Length = 426

 Score =  617 bits (1590), Expect(2) = 0.0
 Identities = 293/329 (89%), Positives = 311/329 (94%), Gaps = 1/329 (0%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKG-EFGGFGSVSGKIEIEI 516
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKG EFGGFGSV+GKIE EI
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGAEFGGFGSVTGKIECEI 119

Query: 517  KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 696
            KINHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKE
Sbjct: 120  KINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKE 179

Query: 697  GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 876
            GYGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLH
Sbjct: 180  GYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLH 239

Query: 877  ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 1056
            ESLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVA
Sbjct: 240  ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 1057 LWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            LWDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  LWDLRNLKLKLHTFESHKDEIFQVHWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQIWQMAEN 407



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 319  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQIWQM 404


>ref|XP_535325.1| PREDICTED: similar to retinoblastoma binding protein 4 isoform 1
            [Canis familiaris].
          Length = 390

 Score =  613 bits (1580), Expect(2) = 0.0
 Identities = 292/293 (99%), Positives = 293/293 (100%)
 Frame = +1

Query: 265  MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 444
            MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA
Sbjct: 1    MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60

Query: 445  SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT 624
            SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT
Sbjct: 61   SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT 120

Query: 625  KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 804
            KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK
Sbjct: 121  KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 180

Query: 805  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE
Sbjct: 181  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 240

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            VNCLSFNPYSEFILATGSADKTVALWDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 241  VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 293



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 294  NETILASSGTDRRLNVWDLSKI 315



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 237 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 284

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 285 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 344

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 345 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 384



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 230  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 283

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 284  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 343

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 344  DFSWNPNEPWVICSVSEDNIMQVWQM 369


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,012,726
Number of extensions: 1189302
Number of successful extensions: 5418
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 4916
Number of HSP's successfully gapped: 212
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo s...   684   0.0  
Alignment   gi|NP_001128727.1| histone-binding protein RBBP4 isoform b [Hom...   677   0.0  
Alignment   gi|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo s...   620   0.0  
Alignment   gi|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Hom...   618   0.0  
Alignment   gi|NP_001128728.1| histone-binding protein RBBP4 isoform c [Hom...   613   0.0  
Alignment   gi|NP_113673.3| glutamate-rich WD repeat-containing protein 1 [...    86   1e-17
Alignment   gi|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens].     76   5e-14
Alignment   gi|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens].       73   5e-13
Alignment   gi|NP_008882.2| transcription initiation factor TFIID subunit 5...    71   2e-12
Alignment   gi|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1...    69   7e-12

>ref|NP_005601.1| histone-binding protein RBBP4 isoform a [Homo sapiens].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|NP_001128727.1| histone-binding protein RBBP4 isoform b [Homo sapiens].
          Length = 424

 Score =  677 bits (1748), Expect(2) = 0.0
 Identities = 326/328 (99%), Positives = 327/328 (99%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEA FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEA-FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 60   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 180  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 300  WDLRNLKLKLHSFESHKDEIFQVQWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 418



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 318  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQVWQM 403


>ref|NP_002884.1| histone-binding protein RBBP7 isoform 2 [Homo sapiens].
          Length = 425

 Score =  620 bits (1599), Expect(2) = 0.0
 Identities = 292/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DS+KGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIWQMAEN 406



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|NP_001185648.1| histone-binding protein RBBP7 isoform 1 [Homo sapiens].
          Length = 469

 Score =  618 bits (1593), Expect(2) = 0.0
 Identities = 288/321 (89%), Positives = 307/321 (95%)
 Frame = +1

Query: 181  FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLV 360
            F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD+++H LV
Sbjct: 51   FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLV 110

Query: 361  LGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEV 540
            LGTHTSDEQNHLV+A V +PNDDAQFDASH DS+KGEFGGFGSV+GKIE EIKINHEGEV
Sbjct: 111  LGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEV 170

Query: 541  NRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNP 720
            NRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEGYGLSWN 
Sbjct: 171  NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNS 230

Query: 721  NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVA 900
            NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHESLFGSVA
Sbjct: 231  NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 290

Query: 901  DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLKNLK 1080
            DDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL+NLK
Sbjct: 291  DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 350

Query: 1081 LKLHSFESHKDEIFQVQWSPH 1143
            LKLH+FESHKDEIFQV WSPH
Sbjct: 351  LKLHTFESHKDEIFQVHWSPH 371



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 372  NETILASSGTDRRLNVWDLSKI 393



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 315 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 362

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 363 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 422

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 423 FSWNPNEPWVICSVSEDNIMQIWQMAEN 450



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 308  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 361

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 362  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 421

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 422  DFSWNPNEPWVICSVSEDNIMQIWQM 447


>ref|NP_001128728.1| histone-binding protein RBBP4 isoform c [Homo sapiens].
          Length = 390

 Score =  613 bits (1580), Expect(2) = 0.0
 Identities = 292/293 (99%), Positives = 293/293 (100%)
 Frame = +1

Query: 265  MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 444
            MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA
Sbjct: 1    MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60

Query: 445  SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT 624
            SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT
Sbjct: 61   SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYT 120

Query: 625  KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 804
            KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK
Sbjct: 121  KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 180

Query: 805  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE
Sbjct: 181  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 240

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            VNCLSFNPYSEFILATGSADKTVALWDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 241  VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 293



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 294  NETILASSGTDRRLNVWDLSKI 315



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 237 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 284

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 285 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 344

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 345 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 384



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 230  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 283

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 284  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 343

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 344  DFSWNPNEPWVICSVSEDNIMQVWQM 369


>ref|NP_113673.3| glutamate-rich WD repeat-containing protein 1 [Homo sapiens].
          Length = 446

 Score = 86.3 bits (212), Expect(2) = 1e-17
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
 Frame = +1

Query: 643  DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV--VDA 816
            D   +  P     GH  EG+ L W+P ++G LL+      I LW     P +G    VD 
Sbjct: 199  DEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW----TPTDGGSWHVDQ 254

Query: 817  KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR-SNNTSKPSHSVDAHTAEVNC 993
            +  F GHT  VED+ W     ++F S + D  + IWD R + + +    +  AH  +VN 
Sbjct: 255  RP-FVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNV 313

Query: 994  LSFNPYSEFILATGSADKTVALWDLKNLK--LKLHSFESHKDEIFQVQWSP 1140
            +S++    F+L +G  D  + +WDL+  K    + +F+ H   +  V+W P
Sbjct: 314  ISWSRREPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHP 363



 Score = 22.7 bits (47), Expect(2) = 1e-17
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 1152 ILASSGTDRKLNVWDLS 1202
            + A+SG D ++  WDL+
Sbjct: 368  VFAASGADHQITQWDLA 384



 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
 Frame = +1

Query: 628  HPSKPDPSGECNPDLR-LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 804
            H   P   G  + D R   GH +    L W+P  +    S S D +I +WDI A P +  
Sbjct: 240  HLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKAC 299

Query: 805  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            ++   T  T H   V  +SW    E    S  DD  L IWD R   +  P  +   H A 
Sbjct: 300  ML---TTATAHDGDVNVISWSR-REPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAP 355

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDL 1068
            V  + ++P    + A   AD  +  WDL
Sbjct: 356  VTSVEWHPQDSGVFAASGADHQITQWDL 383


>ref|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens].
          Length = 423

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 48/158 (30%), Positives = 82/158 (51%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH +    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 249  PIVTLSGHMEAVSSVLWSD--AEEICSASWDHTIRVWDVESG-------SLKSTLTGNK- 298

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 299  VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 358  LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 395


>ref|NP_000279.1| peroxisomal biogenesis factor 7 [Homo sapiens].
          Length = 323

 Score = 72.0 bits (175), Expect(2) = 5e-13
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            H +E Y + W+      L+ S S D T+ LWD    P  GK +     F GH +++    
Sbjct: 110  HAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD----PTVGKSL---CTFRGHESIIYSTI 162

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            W       F S + DQ L IWD ++         + AH AE+    +  Y+E +L TG+ 
Sbjct: 163  WSPHIPGCFASASGDQTLRIWDVKAAGVRIV---IPAHQAEILSCDWCKYNENLLVTGAV 219

Query: 1042 DKTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
            D ++  WDL+N++  +     H   I +V++SP
Sbjct: 220  DCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP 252



 Score = 21.2 bits (43), Expect(2) = 5e-13
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSK 1205
            H ++LAS   D  +  W+ SK
Sbjct: 254  HASVLASCSYDFTVRFWNFSK 274



 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 42/145 (28%), Positives = 66/145 (45%)
 Frame = +1

Query: 679  RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 858
            RGH+   Y   W+P++ G   SAS D T+ +WD+       K    + +   H A +   
Sbjct: 152  RGHESIIYSTIWSPHIPGCFASASGDQTLRIWDV-------KAAGVRIVIPAHQAEILSC 204

Query: 859  SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 1038
             W   +E+L  + A D  L  WD R  N  +P   +  HT  +  + F+P+   +LA+ S
Sbjct: 205  DWCKYNENLLVTGAVDCSLRGWDLR--NVRQPVFELLGHTYAIRRVKFSPFHASVLASCS 262

Query: 1039 ADKTVALWDLKNLKLKLHSFESHKD 1113
             D TV  W+       L + E H +
Sbjct: 263  YDFTVRFWNFSKPDSLLETVEHHTE 287



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDH-------TICLWDISAVPKEGKVVDAKTIFTG 834
            LR   + GY   ++P L G L  A+  H       T+ + D    P E  +   ++ F  
Sbjct: 12   LRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILD----PDEAGLRLFRS-FDW 66

Query: 835  HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PY 1011
            +  +  DV+W   +E +  + + D  L +WDT     + P      H  EV  + ++   
Sbjct: 67   NDGLF-DVTWSENNEHVLITCSGDGSLQLWDTA--KAAGPLQVYKEHAQEVYSVDWSQTR 123

Query: 1012 SEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHM 1146
             E ++ +GS D+TV LWD   +   L +F  H+  I+   WSPH+
Sbjct: 124  GEQLVVSGSWDQTVKLWD-PTVGKSLCTFRGHESIIYSTIWSPHI 167


>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
          Length = 800

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 52/158 (32%), Positives = 79/158 (50%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            L GH    YG S++P+ + +LLS+S+D T+ LW +       +       + GH   V D
Sbjct: 539  LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSL-------QTFTCLVGYKGHNYPVWD 590

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
              +   +   F S   D+   +W T   +  +P      H A+VNC  F+P S ++ ATG
Sbjct: 591  TQFSP-YGYYFVSGGHDRVARLWAT---DHYQPLRIFAGHLADVNCTRFHPNSNYV-ATG 645

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHMR 1149
            SAD+TV LWD+ N    +  F  HK  I  + +SP+ R
Sbjct: 646  SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSPNGR 682


>ref|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1X isoform b [Homo
            sapiens].
          Length = 526

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 44/152 (28%), Positives = 74/152 (48%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 864
            H+   + L WN     ++LSA  D T  +WD           +AK  F  H+A   DV W
Sbjct: 277  HKGPIFALKWNRK-GNYILSAGVDKTTIIWD-------AHTGEAKQQFPFHSAPALDVDW 328

Query: 865  HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 1044
               + + F S + D  + +         +P  +   HT EVN + ++P S  +LA+ S D
Sbjct: 329  Q--NNTTFASCSTDMCIHVCRL---GCDRPVKTFQGHTNEVNAIKWDP-SGMLLASCSDD 382

Query: 1045 KTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
             T+ +W +K  ++ +H  ++H  EI+ ++WSP
Sbjct: 383  MTLKIWSMKQ-EVCIHDLQAHNKEIYTIKWSP 413


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,264,610
Number of extensions: 1176435
Number of successful extensions: 5281
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 4894
Number of HSP's successfully gapped: 139
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033056.2| histone-binding protein RBBP4 [Mus musculus].        684   0.0  
Alignment   gi|NP_033057.3| histone-binding protein RBBP7 [Mus musculus].        620   0.0  
Alignment   gi|NP_700468.2| glutamate-rich WD repeat-containing protein 1 [...    86   1e-17
Alignment   gi|NP_001185989.1| ribosome biogenesis protein WDR12 [Mus muscu...    75   1e-13
Alignment   gi|NP_001185990.1| ribosome biogenesis protein WDR12 [Mus muscu...    75   1e-13
Alignment   gi|NP_067287.1| ribosome biogenesis protein WDR12 [Mus musculus].     75   1e-13
Alignment   gi|NP_001155297.1| peroxisomal biogenesis factor 7 isoform 2 [M...    74   3e-13
Alignment   gi|NP_796316.2| transcription initiation factor TFIID subunit 5...    71   1e-12
Alignment   gi|NP_032848.1| peroxisomal biogenesis factor 7 isoform 1 [Mus ...    71   2e-12
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated...    64   7e-12

>ref|NP_033056.2| histone-binding protein RBBP4 [Mus musculus].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|NP_033057.3| histone-binding protein RBBP7 [Mus musculus].
          Length = 425

 Score =  620 bits (1599), Expect(2) = 0.0
 Identities = 292/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DS+KGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            SW+     +  SV++D  + IW    N  +     V A   E
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTASELE 421



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|NP_700468.2| glutamate-rich WD repeat-containing protein 1 [Mus musculus].
          Length = 446

 Score = 85.9 bits (211), Expect(2) = 1e-17
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
 Frame = +1

Query: 643  DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV--VDA 816
            D      P     GH  EG+ L W+P + G LL+      + LW     P EG    VD 
Sbjct: 199  DEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLW----TPTEGGSWNVDQ 254

Query: 817  KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR-SNNTSKPSHSVDAHTAEVNC 993
            +  F GHT  VED+ W    +++F S + D  + IWD R +   +    +  AH  +VN 
Sbjct: 255  RP-FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNV 313

Query: 994  LSFNPYSEFILATGSADKTVALWDLKNLK--LKLHSFESHKDEIFQVQWSP 1140
            +S++    F+L +G  D  + +WDL+  K    + +F+ H   +  V+W P
Sbjct: 314  ISWSRREPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHP 363



 Score = 22.7 bits (47), Expect(2) = 1e-17
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 1152 ILASSGTDRKLNVWDLS 1202
            + A+SG D ++  WDL+
Sbjct: 368  VFAASGADNQITQWDLA 384



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 52/182 (28%), Positives = 72/182 (39%), Gaps = 1/182 (0%)
 Frame = +1

Query: 526  HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLR-LRGHQKEGY 702
            H GE     + P+ P  + T     +V       H   P   G  N D R   GH +   
Sbjct: 213  HMGEGFALDWSPRVPGRLLTGDCQKNV-------HLWTPTEGGSWNVDQRPFVGHTRSVE 265

Query: 703  GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 882
             L W+P       S S D +I +WDI A P +  ++   T  T H   V  +SW    E 
Sbjct: 266  DLQWSPTEDTVFASCSADASIRIWDIRAAPGKACML---TTATAHDGDVNVISWSR-REP 321

Query: 883  LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 1062
               S  DD  L +WD R   +  P  +   H A V  + ++P    + A   AD  +  W
Sbjct: 322  FLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQW 381

Query: 1063 DL 1068
            DL
Sbjct: 382  DL 383


>ref|NP_001185989.1| ribosome biogenesis protein WDR12 [Mus musculus].
          Length = 423

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 48/158 (30%), Positives = 82/158 (51%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH +    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 249  PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 299  VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 358  LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 395


>ref|NP_001185990.1| ribosome biogenesis protein WDR12 [Mus musculus].
          Length = 423

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 48/158 (30%), Positives = 82/158 (51%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH +    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 249  PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 299  VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 358  LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 395


>ref|NP_067287.1| ribosome biogenesis protein WDR12 [Mus musculus].
          Length = 423

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 48/158 (30%), Positives = 82/158 (51%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH +    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 249  PLVTLSGHTEAISSVLWSD--AEEICSASWDHTIRVWDVESG-------GLKSTLTGNK- 298

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 299  VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 357

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 358  LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 395


>ref|NP_001155297.1| peroxisomal biogenesis factor 7 isoform 2 [Mus musculus].
          Length = 292

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 46/165 (27%), Positives = 73/165 (44%)
 Frame = +1

Query: 619  YTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE 798
            Y +H  + DP+   N     RGH+   Y   W+P++ G   SAS D T+ +WD+      
Sbjct: 102  YKEHTQEWDPTVG-NSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDV------ 154

Query: 799  GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 978
             K    + +   H   +    W   +E+L  + A D  L  WD R  N  +P   +  HT
Sbjct: 155  -KTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLR--NVRQPVFELLGHT 211

Query: 979  AEVNCLSFNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKD 1113
              +  + F+P+   +LA+ S D TV  W+       L + E H +
Sbjct: 212  YAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDPLLETVEHHTE 256



 Score = 64.3 bits (155), Expect(2) = 8e-11
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
 Frame = +1

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT------------IFTGHTA 843
            + ++W+ N    L++ S D ++ LWD +      +V    T             F GH +
Sbjct: 66   FDVTWSENNEHVLVTCSGDGSLQLWDTAKATGPLQVYKEHTQEWDPTVGNSLCTFRGHES 125

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V+    W       F S + DQ L IWD +   T+     + AH  E+    +  Y+E +
Sbjct: 126  VIYSTIWSPHIPGCFASASGDQTLRIWDVK---TTGVRIVIPAHQTEILSCDWCKYNENL 182

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
            + TG+ D ++  WDL+N++  +     H   I +V++SP
Sbjct: 183  VVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP 221



 Score = 21.2 bits (43), Expect(2) = 8e-11
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSK 1205
            H ++LAS   D  +  W+ SK
Sbjct: 223  HASVLASCSYDFTVRFWNFSK 243


>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
          Length = 801

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 52/158 (32%), Positives = 79/158 (50%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            L GH    YG S++P+ + +LLS+S+D T+ LW +       +       + GH   V D
Sbjct: 540  LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSL-------QTFTCLVGYKGHNYPVWD 591

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
              +   +   F S   D+   +W T   +  +P      H A+VNC  F+P S ++ ATG
Sbjct: 592  TQFSP-YGYYFVSGGHDRVARLWAT---DHYQPLRIFAGHLADVNCTRFHPNSNYV-ATG 646

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHMR 1149
            SAD+TV LWD+ N    +  F  HK  I  + +SP+ R
Sbjct: 647  SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSPNGR 683


>ref|NP_032848.1| peroxisomal biogenesis factor 7 isoform 1 [Mus musculus].
          Length = 318

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 41/145 (28%), Positives = 65/145 (44%)
 Frame = +1

Query: 679  RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 858
            RGH+   Y   W+P++ G   SAS D T+ +WD+       K    + +   H   +   
Sbjct: 147  RGHESVIYSTIWSPHIPGCFASASGDQTLRIWDV-------KTTGVRIVIPAHQTEILSC 199

Query: 859  SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 1038
             W   +E+L  + A D  L  WD R  N  +P   +  HT  +  + F+P+   +LA+ S
Sbjct: 200  DWCKYNENLVVTGAVDCSLRGWDLR--NVRQPVFELLGHTYAIRRVKFSPFHASVLASCS 257

Query: 1039 ADKTVALWDLKNLKLKLHSFESHKD 1113
             D TV  W+       L + E H +
Sbjct: 258  YDFTVRFWNFSKPDPLLETVEHHTE 282



 Score = 68.2 bits (165), Expect(2) = 6e-12
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            H +E Y + W+      L+ S S D T+ +WD +       V ++   F GH +V+    
Sbjct: 105  HTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPT-------VGNSLCTFRGHESVIYSTI 157

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            W       F S + DQ L IWD +   T+     + AH  E+    +  Y+E ++ TG+ 
Sbjct: 158  WSPHIPGCFASASGDQTLRIWDVK---TTGVRIVIPAHQTEILSCDWCKYNENLVVTGAV 214

Query: 1042 DKTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
            D ++  WDL+N++  +     H   I +V++SP
Sbjct: 215  DCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP 247



 Score = 21.2 bits (43), Expect(2) = 6e-12
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSK 1205
            H ++LAS   D  +  W+ SK
Sbjct: 249  HASVLASCSYDFTVRFWNFSK 269



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDH--TICLWDISAVPKEGKVVDAKTIFTGHTAVV 849
            LR   + GY   ++P L G L  A+  H        +  + +    +     F  +  + 
Sbjct: 7    LRVPGRHGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLVLDQNESGLQIFRSFDWNDGLF 66

Query: 850  EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFIL 1026
             DV+W   +E +  + + D  L +WDT     + P      HT EV  + ++    E ++
Sbjct: 67   -DVTWSENNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLV 123

Query: 1027 ATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHM 1146
             +GS D+TV +WD   +   L +F  H+  I+   WSPH+
Sbjct: 124  VSGSWDQTVKVWD-PTVGNSLCTFRGHESVIYSTIWSPHI 162


>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
            factor 65 kDa subunit 5L [Mus musculus].
          Length = 589

 Score = 63.5 bits (153), Expect(2) = 7e-12
 Identities = 48/156 (30%), Positives = 73/156 (46%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            LRGH    Y   +  + SG LLS S+D +I  WD+ +            ++ GH   V D
Sbjct: 338  LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
            V         F S + D+   +W   S + + P      H A+V+C+ F+P S + LATG
Sbjct: 390  VDISPF-SLYFASGSHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 444

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            S DKTV LW  +     +  F  H+  +  + +SP+
Sbjct: 445  STDKTVRLWSAQQGN-SVRLFTGHRGPVLSLSFSPN 479



 Score = 25.4 bits (54), Expect(2) = 7e-12
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 1155 LASSGTDRKLNVWDLS 1202
            LAS+G D++L +WDL+
Sbjct: 483  LASAGEDQRLKLWDLA 498



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 40/131 (30%), Positives = 68/131 (51%)
 Frame = +1

Query: 682  GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            GH  +   + ++PN S +L + S D T+ LW      ++G  V    +FTGH   V  +S
Sbjct: 424  GHLADVDCVKFHPN-SNYLATGSTDKTVRLWSA----QQGNSV---RLFTGHRGPVLSLS 475

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            +    + L  S  +DQ+L +WD  S    K    +  HT  +  L+F+P S  ++A+ S 
Sbjct: 476  FSPNGKYL-ASAGEDQRLKLWDLASGTLFK---ELRGHTDSITSLAFSPDSG-LIASASM 530

Query: 1042 DKTVALWDLKN 1074
            D +V +WD+++
Sbjct: 531  DNSVRVWDIRS 541


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,507,947
Number of extensions: 1002657
Number of successful extensions: 4263
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 3952
Number of HSP's successfully gapped: 103
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-lik...   684   0.0  
Alignment   gi|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-lik...   621   0.0  
Alignment   gi|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-lik...   620   0.0  
Alignment   gi|XP_003127319.1| PREDICTED: glutamate-rich WD repeat-containi...    84   3e-17
Alignment   gi|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12...    76   3e-14
Alignment   gi|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 re...    75   6e-14
Alignment   gi|XP_001929370.2| PREDICTED: transcription initiation factor T...    71   1e-12
Alignment   gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/...    64   4e-12
Alignment   gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p...    68   1e-11
Alignment   gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ...    67   3e-11

>ref|XP_003356338.1| PREDICTED: histone-binding protein RBBP4-like [Sus scrofa].
          Length = 425

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 327/328 (99%), Positives = 328/328 (100%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1    MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
Sbjct: 61   FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 120

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
Sbjct: 121  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
Sbjct: 181  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 241  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLHSFESHKDEIFQVQWSPH
Sbjct: 301  WDLRNLKLKLHSFESHKDEIFQVQWSPH 328



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 329  NETILASSGTDRRLNVWDLSKI 350



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG---HQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 319

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN--NTSKPSHSVD 969
            SW+     +  SV++D  + +W    N  N   P  SVD
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 265  PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------LHSFESHKD 318

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWD-TRSNNTSKPSHSVDA----------HTAEVN 990
             +  V W   +E++  S   D++L +WD ++      P  + D           HTA+++
Sbjct: 319  EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 379  DFSWNPNEPWVICSVSEDNIMQVWQM 404


>ref|XP_003135004.1| PREDICTED: histone-binding protein RBBP7-like isoform 1 [Sus scrofa].
          Length = 425

 Score =  621 bits (1602), Expect(2) = 0.0
 Identities = 293/328 (89%), Positives = 311/328 (94%)
 Frame = +1

Query: 160  MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 339
            MA KE  F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKD
Sbjct: 1    MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 340  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK 519
            +++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKIE EIK
Sbjct: 60   YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKIECEIK 119

Query: 520  INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 699
            INHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRGHQKEG
Sbjct: 120  INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 179

Query: 700  YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 879
            YGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+WHLLHE
Sbjct: 180  YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239

Query: 880  SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 1059
            SLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSADKTVAL
Sbjct: 240  SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 299

Query: 1060 WDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            WDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 300  WDLRNLKLKLHTFESHKDEIFQVHWSPH 327



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 328  NETILASSGTDRRLNVWDLSKI 349



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 318

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 378

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 379 FSWNPNEPWVICSVSEDNIMQIWQMAEN 406



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 264  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 317

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 318  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 377

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 378  DFSWNPNEPWVICSVSEDNIMQIWQM 403


>ref|XP_003360284.1| PREDICTED: histone-binding protein RBBP7-like [Sus scrofa].
          Length = 469

 Score =  620 bits (1600), Expect(2) = 0.0
 Identities = 291/333 (87%), Positives = 310/333 (93%)
 Frame = +1

Query: 145  ACLYAMADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR 324
            A L+        F+D VEERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+
Sbjct: 39   ASLHTARHLRTVFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTK 98

Query: 325  PEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKI 504
            PEGKD+++H LVLGTHTSDEQNHLV+A V +PNDDAQFDASH DSEKGEFGGFGSV+GKI
Sbjct: 99   PEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSEKGEFGGFGSVTGKI 158

Query: 505  EIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRG 684
            E EIKINHEGEVNRARYMPQNP IIATKTPSSDVLVFDYTKHP+KPDPSGECNPDLRLRG
Sbjct: 159  ECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRG 218

Query: 685  HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 864
            HQKEGYGLSWN NLSGHLLSASDDHT+CLWDI+A PKEGK+VDAK IFTGH+AVVEDV+W
Sbjct: 219  HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 278

Query: 865  HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 1044
            HLLHESLFGSVADDQKLMIWDTRSN TSKPSH VDAHTAEVNCLSFNPYSEFILATGSAD
Sbjct: 279  HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 338

Query: 1045 KTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            KTVALWDL+NLKLKLH+FESHKDEIFQV WSPH
Sbjct: 339  KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 371



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 1143 HETILASSGTDRKLNVWDLSKI 1208
            +ETILASSGTDR+LNVWDLSKI
Sbjct: 372  NETILASSGTDRRLNVWDLSKI 393



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
 Frame = +1

Query: 526 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 696
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 315 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR------------NLKLKLHTFESHKDE 362

Query: 697 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVED 855
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 363 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 422

Query: 856 VSWHLLHESLFGSVADDQKLMIWDTRSN 939
            SW+     +  SV++D  + IW    N
Sbjct: 423 FSWNPNEPWVICSVSEDNIMQIWQMAEN 450



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P   +  H  E   LS+NP     L + S D T+ LWD+  +  +         F  H  
Sbjct: 308  PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------FESHKD 361

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVN 990
             +  V W   +E++  S   D++L +WD       + +   +            HTA+++
Sbjct: 362  EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 421

Query: 991  CLSFNPYSEFILATGSADKTVALWDL 1068
              S+NP   +++ + S D  + +W +
Sbjct: 422  DFSWNPNEPWVICSVSEDNIMQIWQM 447


>ref|XP_003127319.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Sus
            scrofa].
          Length = 445

 Score = 84.0 bits (206), Expect(2) = 3e-17
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
 Frame = +1

Query: 643  DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 822
            D      P     GH  EG+ L W+P + G LL+      I LW  +        VD + 
Sbjct: 198  DEQARVKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLW--TPTDSGSWHVDQRP 255

Query: 823  IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLS 999
             F GHT  VED+ W    +++F S + D  + IWD R+  +     +   AH  +VN +S
Sbjct: 256  -FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTPAAHNGDVNVIS 314

Query: 1000 FNPYSEFILATGSADKTVALWDLKNLK--LKLHSFESHKDEIFQVQWSP 1140
            ++    F+L +G  D  + +WDL+  K    + +F+ H   +  V+W P
Sbjct: 315  WSRQEPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHVAPVTSVEWHP 362



 Score = 22.7 bits (47), Expect(2) = 3e-17
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 1152 ILASSGTDRKLNVWDLS 1202
            + A+SG D ++  WDL+
Sbjct: 367  VFAASGADNQITQWDLA 383



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 44/148 (29%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
 Frame = +1

Query: 628  HPSKPDPSGECNPDLR-LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 804
            H   P  SG  + D R   GH +    L W+P       S S D +I +WDI A P +  
Sbjct: 239  HLWTPTDSGSWHVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKAC 298

Query: 805  VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 984
            ++   T    H   V  +SW    E    S  DD  L +WD R   +  P  +   H A 
Sbjct: 299  ML---TTPAAHNGDVNVISWSR-QEPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHVAP 354

Query: 985  VNCLSFNPYSEFILATGSADKTVALWDL 1068
            V  + ++P    + A   AD  +  WDL
Sbjct: 355  VTSVEWHPQDSGVFAASGADNQITQWDL 382


>ref|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12-like [Sus scrofa].
          Length = 220

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 48/158 (30%), Positives = 83/158 (52%)
 Frame = +1

Query: 664  PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 843
            P + L GH++    + W+   +  + SAS DHTI +WD+ +          K+  TG+  
Sbjct: 46   PIVTLSGHKEAISSVLWSD--AEEICSASWDHTIGVWDVESG-------SLKSTLTGNK- 95

Query: 844  VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 1023
            V   +S+  L + L  S + D+ + +WD R+ + S  S S+ +HT  V  + ++P  E  
Sbjct: 96   VFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQ 154

Query: 1024 LATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWS 1137
            L +GS D  V LWD ++ K  L+   +H+D++  V W+
Sbjct: 155  LISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWT 192


>ref|XP_003353251.1| PREDICTED: peroxisomal targeting signal 2 receptor-like [Sus scrofa].
          Length = 335

 Score = 75.5 bits (184), Expect = 6e-14
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 1/167 (0%)
 Frame = +1

Query: 643  DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAK 819
            D +G   P    + H +E Y + W+      L+ S S D T+ LWD    P  G+ +   
Sbjct: 96   DTAGAAGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD----PTVGRSL--- 148

Query: 820  TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 999
              F GH +++    W       F S + DQ L IWD +   T+     V AH AE+    
Sbjct: 149  CTFKGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVK---TTGVRIVVPAHQAEILSCD 205

Query: 1000 FNPYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
            +  Y+E +L TG+ D ++  WDL+N++  +     H   I +V++SP
Sbjct: 206  WCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP 252



 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 41/145 (28%), Positives = 66/145 (45%)
 Frame = +1

Query: 679  RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 858
            +GH+   Y   W+P++ G   SAS D T+ +WD+       K    + +   H A +   
Sbjct: 152  KGHESIIYSTIWSPHIPGCFASASGDQTLRIWDV-------KTTGVRIVVPAHQAEILSC 204

Query: 859  SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 1038
             W   +E+L  + A D  L  WD R  N  +P   +  HT  +  + F+P+   +LA+ S
Sbjct: 205  DWCKYNENLLVTGAVDCSLRGWDLR--NVRQPVFELLGHTYAIRRVKFSPFYASVLASCS 262

Query: 1039 ADKTVALWDLKNLKLKLHSFESHKD 1113
             D TV  W+       L + E H +
Sbjct: 263  YDFTVRFWNFSKPNPLLETVEHHTE 287



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDH-------TICLWDISAVPKEGKVVDAKTIFTG 834
            LR   + GY   ++P L G L  A+  H       T+ + D +             IF  
Sbjct: 12   LRVPGRHGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLILDHNE--------SGLRIFRS 63

Query: 835  H--TAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN- 1005
               T  + DV+W   +E +  + + D  L +WDT     + P      HT EV  + ++ 
Sbjct: 64   FDWTDALFDVTWSENNEHVLVTCSGDGSLQLWDTA--GAAGPLQVYKEHTQEVYSVDWSQ 121

Query: 1006 PYSEFILATGSADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHM 1146
               E ++ +GS D+TV LWD   +   L +F+ H+  I+   WSPH+
Sbjct: 122  TRGEQLVVSGSWDQTVKLWD-PTVGRSLCTFKGHESIIYSTIWSPHI 167


>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
            scrofa].
          Length = 662

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 52/158 (32%), Positives = 79/158 (50%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            L GH    YG S++P+ + +LLS+S+D T+ LW +       +       + GH   V D
Sbjct: 401  LYGHSGPVYGASFSPDRN-YLLSSSEDGTVRLWSL-------QTFTCLVGYKGHNYPVWD 452

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
              +   +   F S   D+   +W T   +  +P      H A+VNC  F+P S ++ ATG
Sbjct: 453  TQFSP-YGYYFVSGGHDRVARLWAT---DHYQPLRIFAGHLADVNCTRFHPNSNYV-ATG 507

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPHMR 1149
            SAD+TV LWD+ N    +  F  HK  I  + +SP+ R
Sbjct: 508  SADRTVRLWDVLNGNC-VRIFTGHKGPIHSLTFSPNGR 544


>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
            factor-associated factor 65 kDa subunit 5L [Sus scrofa].
          Length = 589

 Score = 63.9 bits (154), Expect(2) = 4e-12
 Identities = 48/156 (30%), Positives = 74/156 (47%)
 Frame = +1

Query: 676  LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 855
            LRGH    Y   +  + SG LLS S+D +I  WD+ +            ++ GH   V D
Sbjct: 338  LRGHCGPVYSTRFLADSSG-LLSCSEDMSIRYWDLGSFTNT-------VLYQGHAYPVWD 389

Query: 856  VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 1035
            V     +   F S + D+   +W   S + + P      H A+V+C+ F+P S + LATG
Sbjct: 390  VDISP-YSLYFASGSHDRTARLW---SFDRTYPLRIYAGHLADVDCVKFHPNSNY-LATG 444

Query: 1036 SADKTVALWDLKNLKLKLHSFESHKDEIFQVQWSPH 1143
            S DKTV LW  +     +  F  H+  +  + +SP+
Sbjct: 445  STDKTVRLWSAQQGN-SVRLFTGHRGPVLSLAFSPN 479



 Score = 25.4 bits (54), Expect(2) = 4e-12
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 1155 LASSGTDRKLNVWDLS 1202
            LAS+G D++L +WDL+
Sbjct: 483  LASAGEDQRLKLWDLA 498



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 40/131 (30%), Positives = 68/131 (51%)
 Frame = +1

Query: 682  GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 861
            GH  +   + ++PN S +L + S D T+ LW      ++G  V    +FTGH   V  ++
Sbjct: 424  GHLADVDCVKFHPN-SNYLATGSTDKTVRLWSA----QQGNSV---RLFTGHRGPVLSLA 475

Query: 862  WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 1041
            +    + L  S  +DQ+L +WD  S    K    +  HT  +  L+F+P S  ++A+ S 
Sbjct: 476  FSPNGKYL-ASAGEDQRLKLWDLASGTLFK---ELRGHTDNITSLTFSPDSS-LIASASM 530

Query: 1042 DKTVALWDLKN 1074
            D +V +WD++N
Sbjct: 531  DNSVRVWDIRN 541


>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
            scrofa].
          Length = 529

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 44/152 (28%), Positives = 72/152 (47%)
 Frame = +1

Query: 685  HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 864
            H+   + L WN     ++LSA  D T  +WD           +AK  F  H+A   DV W
Sbjct: 280  HKGPIFALKWNKK-GNYILSAGVDKTTIIWD-------AHTGEAKQQFPFHSAPALDVDW 331

Query: 865  HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 1044
               + + F S + D  + +         +P  +   HT EVN + ++P S  +LA+ S D
Sbjct: 332  Q--NNTTFASCSTDMCIHVCRL---GCDRPVKTFQGHTNEVNAIKWDP-SGMLLASCSDD 385

Query: 1045 KTVALWDLKNLKLKLHSFESHKDEIFQVQWSP 1140
             T+ +W +K     +H  ++H  EI+ ++WSP
Sbjct: 386  MTLKIWSMKQ-DTCVHDLQAHSKEIYTIKWSP 416


>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
          Length = 485

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 46/135 (34%), Positives = 70/135 (51%)
 Frame = +1

Query: 736  LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 915
            L+S SDD T+ LW     P E K   A+   TGH A++  V +      +  S + D+ +
Sbjct: 344  LVSGSDDFTLFLWS----PAEDKKPLAR--MTGHQALINQVLFSP-DSRIIASASFDKSI 396

Query: 916  MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLKNLKLKLHS 1095
             +WD R   T K   S+  H A V  ++++  S  +L +GS+D T+ +WD+K  KL    
Sbjct: 397  KLWDGR---TGKYLASLRGHVAAVYQIAWSADSR-LLVSGSSDSTLKVWDVKAQKLAA-D 451

Query: 1096 FESHKDEIFQVQWSP 1140
               H DE++ V WSP
Sbjct: 452  LPGHADEVYAVDWSP 466


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,960,949
Number of extensions: 737623
Number of successful extensions: 3142
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 2922
Number of HSP's successfully gapped: 75
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002508
         (1210 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         349   2e-93
Sscrofa_ChrX                                                           66   5e-08

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  349 bits (176), Expect = 2e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                            
Query: 468      agaatttggaggttttggctcagttagtggaaaaattgaaatagaaatcaagatcaacca 527
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83025820 agaatttggaggttttggctcagttagtggaaaaattgaaatagaaatcaagatcaacca 83025879

                                                                            
Query: 528      tgaaggagaagtaaacagggcacgttatatgccccagaacccttgcatcatcgcaacaaa 587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83025880 tgaaggagaagtaaacagggcacgttatatgccccagaacccttgcatcatcgcaacaaa 83025939

                                                                        
Query: 588      gactccatccagtgatgttcttgtctttgactatacaaaacacccttctaaaccag 643
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83025940 gactccatccagtgatgttcttgtctttgactatacaaaacacccttctaaaccag 83025995



 Score =  347 bits (175), Expect = 9e-93
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        actccgattggccgatgttggcgcgaaggtgcgcgagtcggccctcacgcaggggcagca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82938414 actccgattggccgatgttggcgcgaaggtgcgcgagtcggccctcacgcaggggcagca 82938473

                                                                            
Query: 61       ggaaacaatagaggccgcgcgcgcagaaggagcgctcgcagcctccccgcccctctcgca 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82938474 ggaaacaatagaggccgcgcgcgcagaaggagcgctcgcagcctccccgcccctctcgca 82938533

                                                                       
Query: 121      acgctctgccccaggatccccccggcttgcctgtacgccatggcggacaaggaag 175
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82938534 acgctctgccccaggatccccccggcttgcctgtacgccatggcggacaaggaag 82938588



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 760      actatctgcctgtgggacatcagtgcagttccaaaagaaggaaaagtggtggatgcgaag 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026576 actatctgcctgtgggacatcagtgcagttccaaaagaaggaaaagtggtggatgcgaag 83026635

                                                                            
Query: 820      accatctttacagggcatacggcagtagtagaagatgtctcctggcatctgctccacgaa 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026636 accatctttacagggcatacggcagtagtagaagatgtctcctggcatctgctccacgaa 83026695

                                                         
Query: 880      tctctgtttgggtcagttgctgatgatcagaaacttatgat 920
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026696 tctctgtttgggtcagttgctgatgatcagaaacttatgat 83026736



 Score =  297 bits (150), Expect = 7e-78
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                            
Query: 174      agcagcctttgatgacgcagtagaagaacgtgtgatcaacgaagagtacaaaatatggaa 233
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82939154 agcagcctttgatgacgcagtagaagaacgtgtgatcaacgaagagtacaaaatatggaa 82939213

                                                                            
Query: 234      aaagaacaccccttttctttacgatttggtgatgacccatgctctggagtggcccagcct 293
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82939214 aaagaacaccccttttctttacgatttggtgatgacccatgctctggagtggcccagcct 82939273

                                              
Query: 294      aactgcacagtggcttccagatgtaaccag 323
                ||||||||||||||||||||||||||||||
Sbjct: 82939274 aactgcacagtggcttccagatgtaaccag 82939303



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                            
Query: 321      cagaccagaaggaaaggatttcagtattcatcgactggttttggggacacacacgtcgga 380
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82942368 cagaccagaaggaaaggatttcagtattcatcgactggttttggggacacacacgtcgga 82942427

                                                                            
Query: 381      tgaacaaaaccaccttgtgatagccagtgtgcagctccctaatgatgatgctcagtttga 440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82942428 tgaacaaaaccaccttgtgatagccagtgtgcagctccctaatgatgatgctcagtttga 82942487

                                             
Query: 441      tgcttcacactatgacagtgaaaaaggag 469
                |||||||||||||||||||||||||||||
Sbjct: 82942488 tgcttcacactatgacagtgaaaaaggag 82942516



 Score =  252 bits (127), Expect = 4e-64
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                            
Query: 921      ctgggatactcgttcaaacaacacttctaaaccaagccactcagttgatgctcacactgc 980
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026833 ctgggatactcgttcaaacaacacttctaaaccaagccactcagttgatgctcacactgc 83026892

                                                                            
Query: 981      tgaagtgaactgcctttctttcaatccttatagtgagttcattcttgccacaggatcagc 1040
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026893 tgaagtgaactgcctttctttcaatccttatagtgagttcattcttgccacaggatcagc 83026952

                       
Query: 1041     tgacaag 1047
                |||||||
Sbjct: 83026953 tgacaag 83026959



 Score =  234 bits (118), Expect = 9e-59
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                            
Query: 642      agacccttctggagagtgcaacccagacttgcgtctccgtggacatcagaaggaaggcta 701
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026349 agacccttctggagagtgcaacccagacttgcgtctccgtggacatcagaaggaaggcta 83026408

                                                                          
Query: 702      tggcctgtcttggaacccaaatctcagtgggcacttacttagtgcttcagatgaccat 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83026409 tggcctgtcttggaacccaaatctcagtgggcacttacttagtgcttcagatgaccat 83026466



 Score =  155 bits (78), Expect = 7e-35
 Identities = 81/82 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1046     agactgttgccttgtgggatctgaaaaatctgaaacttaagttgcattcctttgaatcac 1105
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 83027096 agactgttgccttgtgggatctgagaaatctgaaacttaagttgcattcctttgaatcac 83027155

                                      
Query: 1106     ataaggatgagatattccaggt 1127
                ||||||||||||||||||||||
Sbjct: 83027156 ataaggatgagatattccaggt 83027177



 Score =  133 bits (67), Expect = 2e-28
 Identities = 77/79 (97%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1124     aggttcagtggtcgcctcaca-tgagactattttggcttctagtggtactgaccgcaaac 1182
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 83028312 aggttcagtggtcgcctcacaatgagactattttggcttctagtggtactgaccgcagac 83028371

                                   
Query: 1183     tgaatgtctgggatttgag 1201
                |||||||||||||||||||
Sbjct: 83028372 tgaatgtctgggatttgag 83028390


>Sscrofa_ChrX 
||          Length = 144288218

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                            
Query: 764      tctgcctgtgggacatcagtgcagttccaaaagaaggaaaagtggtggatgcgaagacca 823
                |||| |||||||| |||| |||||  ||||| ||||| ||| | |||||||| ||  | |
Sbjct: 14295996 tctgtctgtgggatatcaatgcaggaccaaaggaaggcaaaattgtggatgctaaagcga 14295937

                                                                            
Query: 824      tctttacagggcatacggcagtagtagaagatgtctcctggcatctgctccacgaatctc 883
                | ||||| || ||  |||| || ||||| |||||  ||||||| ||||| || || ||  
Sbjct: 14295936 tttttactggccactcggctgttgtagaggatgtggcctggcacctgctgcatgagtcat 14295877

                                                     
Query: 884      tgtttgggtcagttgctgatgatcagaaacttatgat 920
                ||||||| || ||||||||||||||||||||||||||
Sbjct: 14295876 tgtttggatctgttgctgatgatcagaaacttatgat 14295840


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,790,241
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 10
Length of query: 1210
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1189
Effective length of database: 2,808,413,156
Effective search space: 3339203242484
Effective search space used: 3339203242484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)