Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069624.1| vacuolar protein sorting-associated protein ... 398 e-116
Alignment gi|NP_001040080.1| vacuolar protein sorting 4 homolog A [Bos ta... 340 1e-93
Alignment gi|NP_001179032.1| katanin p60 ATPase-containing subunit A1 [Bo... 154 2e-37
Alignment gi|XP_002690365.1| PREDICTED: katanin p60 (ATPase-containing) s... 154 2e-37
Alignment gi|NP_001192717.1| katanin p60 ATPase-containing subunit A-like... 153 3e-37
Alignment gi|XP_002697805.1| PREDICTED: Katanin p60 ATPase-containing sub... 153 3e-37
Alignment gi|NP_001179847.1| katanin p60 ATPase-containing subunit A-like... 151 8e-37
Alignment gi|XP_002691858.1| PREDICTED: katanin p60 subunit A-like 1 [Bos... 151 8e-37
Alignment gi|XP_001249863.1| PREDICTED: katanin p60 subunit A-like 1, par... 151 8e-37
Alignment gi|XP_002684330.1| PREDICTED: katanin p60 subunit A-like 1 [Bos... 151 8e-37
>ref|NP_001069624.1| vacuolar protein sorting-associated protein 4B [Bos taurus].
Length = 444
Score = 398 bits (1022), Expect(2) = e-116
Identities = 205/255 (80%), Positives = 212/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MAST NLQKAIDLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTPTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQP+PA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKREKKPQKPVKEGQPAPADEKGNDSDGEGESDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 41.6 bits (96), Expect(2) = e-116
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
>ref|NP_001040080.1| vacuolar protein sorting 4 homolog A [Bos taurus].
Length = 318
Score = 340 bits (872), Expect = 1e-93
Identities = 175/262 (66%), Positives = 199/262 (75%)
Frame = +3
Query: 234 TSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRAKCT 413
T+ LQKAIDL +KA +EDKA NYEEAL+ YQHAV+YFLH IKYEA DKAK++IRAKC
Sbjct: 2 TTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCM 61
Query: 414 EYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQLQGA 593
+YLDRA Q LQ QL GA
Sbjct: 62 QYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKK-----LQEQLMGA 116
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
+V+E+PN++W+DVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
Sbjct: 117 VVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 176
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATEANNSTFFSVSSSDL+SKWLGESEKLVKNLF+LAR++KPSIIFIDE+DSLCGSR
Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR 236
Query: 954 SENESEAARKIKQSS*FKCKGL 1019
+ENESEAAR+IK + +GL
Sbjct: 237 NENESEAARRIKTEFLVQMQGL 258
>ref|NP_001179032.1| katanin p60 ATPase-containing subunit A1 [Bos taurus].
Length = 491
Score = 154 bits (388), Expect = 2e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GP
Sbjct: 191 LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGP 250
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 251 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 310 IDSICSRRGTSEEHEASRRVK 330
>ref|XP_002690365.1| PREDICTED: katanin p60 (ATPase-containing) subunit A 1 [Bos
taurus].
Length = 491
Score = 154 bits (388), Expect = 2e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GP
Sbjct: 191 LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGP 250
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 251 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 310 IDSICSRRGTSEEHEASRRVK 330
>ref|NP_001192717.1| katanin p60 ATPase-containing subunit A-like 2 [Bos taurus].
Length = 466
Score = 153 bits (386), Expect = 3e-37
Identities = 73/145 (50%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Frame = +3
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
I + PN+KW+D+ GL+ AK+ +KEA++ PI++P LFTG +PW+G+LL+GPPGTGK+ L
Sbjct: 172 IYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLL 231
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATE +TFF++S+S +VSKW G+SEKLV+ LF+LAR + PS IF+DE++S+ R
Sbjct: 232 AKAVATEC-KTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 290
Query: 954 SE---NESEAARKIKQSS*FKCKGL 1019
E E + ++K + GL
Sbjct: 291 GTAPGGEHEGSLRMKTELLVQMDGL 315
>ref|XP_002697805.1| PREDICTED: Katanin p60 ATPase-containing subunit A-like 2-like [Bos
taurus].
Length = 466
Score = 153 bits (386), Expect = 3e-37
Identities = 73/145 (50%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Frame = +3
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
I + PN+KW+D+ GL+ AK+ +KEA++ PI++P LFTG +PW+G+LL+GPPGTGK+ L
Sbjct: 172 IYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLL 231
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATE +TFF++S+S +VSKW G+SEKLV+ LF+LAR + PS IF+DE++S+ R
Sbjct: 232 AKAVATEC-KTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 290
Query: 954 SE---NESEAARKIKQSS*FKCKGL 1019
E E + ++K + GL
Sbjct: 291 GTAPGGEHEGSLRMKTELLVQMDGL 315
>ref|NP_001179847.1| katanin p60 ATPase-containing subunit A-like 1 [Bos taurus].
Length = 490
Score = 151 bits (382), Expect = 8e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P+V W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 190 LVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 249
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 250 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 309 IDSICSRRGTSDEHEASRRVK 329
>ref|XP_002691858.1| PREDICTED: katanin p60 subunit A-like 1 [Bos taurus].
Length = 490
Score = 151 bits (382), Expect = 8e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P+V W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 190 LVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 249
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 250 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 309 IDSICSRRGTSDEHEASRRVK 329
>ref|XP_001249863.1| PREDICTED: katanin p60 subunit A-like 1, partial [Bos taurus].
Length = 436
Score = 151 bits (382), Expect = 8e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P+V W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 136 LVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 195
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 196 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 254
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 255 IDSICSRRGTSDEHEASRRVK 275
>ref|XP_002684330.1| PREDICTED: katanin p60 subunit A-like 1 [Bos taurus].
Length = 475
Score = 151 bits (382), Expect = 8e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P+V W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 175 LVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 234
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 235 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 293
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 294 IDSICSRRGTSDEHEASRRVK 314
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,473,375
Number of extensions: 857079
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 2939
Number of HSP's successfully gapped: 59
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848812.1| PREDICTED: similar to vacuolar protein sorting ... 399 e-117
Alignment gi|XP_857291.1| PREDICTED: similar to vacuolar protein sorting ... 399 e-114
Alignment gi|XP_857328.1| PREDICTED: similar to vacuolar protein sorting ... 399 e-113
Alignment gi|XP_857366.1| PREDICTED: similar to vacuolar protein sorting ... 385 e-113
Alignment gi|XP_857249.1| PREDICTED: similar to vacuolar protein sorting ... 399 e-112
Alignment gi|XP_857162.1| PREDICTED: similar to vacuolar protein sorting ... 369 e-102
Alignment gi|XP_536805.2| PREDICTED: similar to vacuolar protein sorting ... 340 6e-98
Alignment gi|XP_857206.1| PREDICTED: similar to vacuolar protein sorting ... 265 6e-71
Alignment gi|XP_533445.1| PREDICTED: similar to katanin p60 subunit A 1 i... 154 2e-37
Alignment gi|XP_861479.1| PREDICTED: similar to katanin p60 subunit A 1 i... 154 2e-37
>ref|XP_848812.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 2
[Canis familiaris].
Length = 444
Score = 399 bits (1025), Expect(2) = e-117
Identities = 205/255 (80%), Positives = 212/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 41.6 bits (96), Expect(2) = e-117
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
>ref|XP_857291.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 6
[Canis familiaris].
Length = 453
Score = 399 bits (1025), Expect(2) = e-114
Identities = 205/255 (80%), Positives = 212/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 31.6 bits (70), Expect(2) = e-114
Identities = 21/39 (53%), Positives = 22/39 (56%), Gaps = 10/39 (25%)
Frame = +2
Query: 989 TEFLVQMQ---------GVGVDMMEFWS-GSTNIPWVLD 1075
TEFLVQMQ VGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQELSDSSVLYSVGVDNDGILVLGATNIPWVLD 294
>ref|XP_857328.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 7
[Canis familiaris].
Length = 452
Score = 399 bits (1025), Expect(2) = e-113
Identities = 205/255 (80%), Positives = 212/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 28.5 bits (62), Expect(2) = e-113
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Frame = +2
Query: 989 TEFLVQMQGV---------GVDMMEFWSGSTNIPWVLD 1075
TEFLVQMQ + G + G+TNIPWVLD
Sbjct: 256 TEFLVQMQELSDSSGGRDTGNNDGILVLGATNIPWVLD 293
>ref|XP_857366.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 8
[Canis familiaris].
Length = 468
Score = 385 bits (990), Expect(2) = e-113
Identities = 205/279 (73%), Positives = 212/279 (75%), Gaps = 24/279 (8%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGK----------------- 713
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKMTFFTLQSSIYDLRKFF 180
Query: 714 -------RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLV 872
RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLV
Sbjct: 181 KCIFHGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLV 240
Query: 873 KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARKIK 989
KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR+IK
Sbjct: 241 KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK 279
Score = 41.6 bits (96), Expect(2) = e-113
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 280 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 309
>ref|XP_857249.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 5
[Canis familiaris].
Length = 457
Score = 399 bits (1025), Expect(2) = e-112
Identities = 205/255 (80%), Positives = 212/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 26.9 bits (58), Expect(2) = e-112
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 14/43 (32%)
Frame = +2
Query: 989 TEFLVQM-------------QGVGVDMMEFWS-GSTNIPWVLD 1075
TEFLVQ+ VGVD G+TNIPWVLD
Sbjct: 256 TEFLVQLLTIFQSAPACNPTNSVGVDNDGILVLGATNIPWVLD 298
>ref|XP_857162.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 3
[Canis familiaris].
Length = 399
Score = 369 bits (948), Expect = e-102
Identities = 190/239 (79%), Positives = 196/239 (82%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTS N QKA+DLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADEKGNDSDGEGETDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 239
>ref|XP_536805.2| PREDICTED: similar to vacuolar protein sorting 4a [Canis
familiaris].
Length = 437
Score = 340 bits (872), Expect(2) = 6e-98
Identities = 174/252 (69%), Positives = 195/252 (77%)
Frame = +3
Query: 234 TSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRAKCT 413
T+ LQKAIDL +KA +EDKA NYEEAL+ YQHAV+YFLH IKYEA DKAK++IRAKC
Sbjct: 2 TTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCM 61
Query: 414 EYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQLQGA 593
+YLDRA Q LQ QL GA
Sbjct: 62 QYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKK-----LQEQLMGA 116
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
+VIE+PN++W+DVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
Sbjct: 117 VVIEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 176
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATEANNSTFFSVSSSDL+SKWLGESEKLVKNLF+LAR++KPSIIFIDE+DSLCGSR
Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR 236
Query: 954 SENESEAARKIK 989
+ENESEAAR+IK
Sbjct: 237 NENESEAARRIK 248
Score = 37.0 bits (84), Expect(2) = 6e-98
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDM-MEFWSGSTNIPWVLD 1075
TEFLVQMQGVG + G+TNIPWVLD
Sbjct: 249 TEFLVQMQGVGNNNDGTLVLGATNIPWVLD 278
>ref|XP_857206.1| PREDICTED: similar to vacuolar protein sorting 4b isoform 4 [Canis
familiaris].
Length = 168
Score = 265 bits (677), Expect = 6e-71
Identities = 131/135 (97%), Positives = 135/135 (100%)
Frame = +3
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
+GAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 3 RGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 62
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 63 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 122
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 123 GSRSENESEAARRIK 137
>ref|XP_533445.1| PREDICTED: similar to katanin p60 subunit A 1 isoform 1 [Canis
familiaris].
Length = 491
Score = 154 bits (388), Expect = 2e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GP
Sbjct: 191 LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGP 250
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 251 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 310 IDSICSRRGTSEEHEASRRVK 330
>ref|XP_861479.1| PREDICTED: similar to katanin p60 subunit A 1 isoform 4 [Canis
familiaris].
Length = 387
Score = 154 bits (388), Expect = 2e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GP
Sbjct: 191 LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGP 250
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 251 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 310 IDSICSRRGTSEEHEASRRVK 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,158,326
Number of extensions: 889743
Number of successful extensions: 3061
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 2946
Number of HSP's successfully gapped: 88
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004860.2| vacuolar protein sorting-associated protein 4B ... 403 e-118
Alignment gi|NP_037377.1| vacuolar protein sorting-associated protein 4A ... 339 1e-97
Alignment gi|NP_112593.2| katanin p60 ATPase-containing subunit A-like 2 ... 154 1e-37
Alignment gi|NP_008975.1| katanin p60 ATPase-containing subunit A1 isofor... 154 2e-37
Alignment gi|NP_001014402.1| katanin p60 ATPase-containing subunit A-like... 151 1e-36
Alignment gi|NP_115492.1| katanin p60 ATPase-containing subunit A-like 1 ... 151 1e-36
Alignment gi|NP_955468.1| spastin isoform 2 [Homo sapiens]. 148 7e-36
Alignment gi|NP_055761.2| spastin isoform 1 [Homo sapiens]. 148 7e-36
Alignment gi|NP_071399.2| fidgetin-like protein 1 [Homo sapiens]. 143 2e-34
Alignment gi|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens]. 143 2e-34
>ref|NP_004860.2| vacuolar protein sorting-associated protein 4B [Homo sapiens].
Length = 444
Score = 403 bits (1035), Expect(2) = e-118
Identities = 207/255 (81%), Positives = 214/255 (83%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
M+STSPNLQKAIDLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 41.6 bits (96), Expect(2) = e-118
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
>ref|NP_037377.1| vacuolar protein sorting-associated protein 4A [Homo sapiens].
Length = 437
Score = 339 bits (870), Expect(2) = 1e-97
Identities = 173/252 (68%), Positives = 195/252 (77%)
Frame = +3
Query: 234 TSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRAKCT 413
T+ LQKAIDL +KA +EDKA NYEEAL+ YQHAV+YFLH IKYEA DKAK++IRAKC
Sbjct: 2 TTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCV 61
Query: 414 EYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQLQGA 593
+YLDRA Q LQ QL GA
Sbjct: 62 QYLDRAEKLKDYLRSKEKHGKKPVKENQSE-----GKGSDSDSEGDNPEKKKLQEQLMGA 116
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
+V+E+PN++W+DVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
Sbjct: 117 VVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 176
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATEANNSTFFSVSSSDL+SKWLGESEKLVKNLF+LAR++KPSIIFIDE+DSLCGSR
Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR 236
Query: 954 SENESEAARKIK 989
+ENESEAAR+IK
Sbjct: 237 NENESEAARRIK 248
Score = 37.0 bits (84), Expect(2) = 1e-97
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDM-MEFWSGSTNIPWVLD 1075
TEFLVQMQGVG + G+TNIPWVLD
Sbjct: 249 TEFLVQMQGVGNNNDGTLVLGATNIPWVLD 278
>ref|NP_112593.2| katanin p60 ATPase-containing subunit A-like 2 [Homo sapiens].
Length = 466
Score = 154 bits (390), Expect = 1e-37
Identities = 74/145 (51%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Frame = +3
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
I + PN+KW+D+ GL+ AK+ +KEA++ PI++P LFTG +PW+G+LL+GPPGTGK+ L
Sbjct: 172 IYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLL 231
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC--- 944
AKAVATE +TFF++S+S +VSKW G+SEKLV+ LF+LAR + PS IF+DE++S+
Sbjct: 232 AKAVATEC-KTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 290
Query: 945 GSRSENESEAARKIKQSS*FKCKGL 1019
G+ S E E + ++K + GL
Sbjct: 291 GTASGGEHEGSLRMKTELLVQMDGL 315
>ref|NP_008975.1| katanin p60 ATPase-containing subunit A1 isoform 1 [Homo sapiens].
Length = 491
Score = 154 bits (388), Expect = 2e-37
Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GP
Sbjct: 191 LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGP 250
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 251 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 310 IDSICSRRGTSEEHEASRRVK 330
>ref|NP_001014402.1| katanin p60 ATPase-containing subunit A-like 1 [Homo sapiens].
Length = 490
Score = 151 bits (381), Expect = 1e-36
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P++ W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 190 LVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 249
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 250 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 309 IDSICSRRGTSDEHEASRRVK 329
>ref|NP_115492.1| katanin p60 ATPase-containing subunit A-like 1 [Homo sapiens].
Length = 490
Score = 151 bits (381), Expect = 1e-36
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P++ W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 190 LVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 249
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 250 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 309 IDSICSRRGTSDEHEASRRVK 329
>ref|NP_955468.1| spastin isoform 2 [Homo sapiens].
Length = 584
Score = 148 bits (374), Expect = 7e-36
Identities = 78/140 (55%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG + AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 292 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 351
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 352 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 410
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 411 VDSLLCERREGEHDASRRLK 430
>ref|NP_055761.2| spastin isoform 1 [Homo sapiens].
Length = 616
Score = 148 bits (374), Expect = 7e-36
Identities = 78/140 (55%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG + AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 324 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 383
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 384 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 442
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 443 VDSLLCERREGEHDASRRLK 462
>ref|NP_071399.2| fidgetin-like protein 1 [Homo sapiens].
Length = 674
Score = 143 bits (361), Expect = 2e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 387 IMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTG 446
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 447 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 505
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 506 LSQRGDGEHESSRRIK 521
>ref|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens].
Length = 674
Score = 143 bits (361), Expect = 2e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 387 IMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTG 446
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 447 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 505
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 506 LSQRGDGEHESSRRIK 521
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,481,542
Number of extensions: 877933
Number of successful extensions: 3015
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 2947
Number of HSP's successfully gapped: 54
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033216.2| vacuolar protein sorting-associated protein 4B ... 390 e-114
Alignment gi|NP_569053.1| vacuolar protein sorting-associated protein 4A ... 339 1e-97
Alignment gi|NP_081997.1| katanin p60 ATPase-containing subunit A-like 2 ... 152 3e-37
Alignment gi|NP_705800.1| katanin p60 ATPase-containing subunit A-like 1 ... 151 1e-36
Alignment gi|NP_035965.2| katanin p60 ATPase-containing subunit A1 [Mus m... 150 1e-36
Alignment gi|NP_058658.2| spastin isoform 2 [Mus musculus]. 149 3e-36
Alignment gi|NP_001156342.1| spastin isoform 1 [Mus musculus]. 149 3e-36
Alignment gi|NP_001156832.1| fidgetin-like protein 1 [Mus musculus]. 143 2e-34
Alignment gi|NP_001156831.1| fidgetin-like protein 1 [Mus musculus]. 143 2e-34
Alignment gi|NP_068691.2| fidgetin-like protein 1 [Mus musculus]. 143 2e-34
>ref|NP_033216.2| vacuolar protein sorting-associated protein 4B [Mus musculus].
Length = 444
Score = 390 bits (1003), Expect(2) = e-114
Identities = 202/255 (79%), Positives = 209/255 (81%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MAST+ NLQKAIDLASKAAQEDKAGNYEEALQ YQHAVQYFLH++KYEAQGDKAKQ+IRA
Sbjct: 1 MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA Q P LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 41.6 bits (96), Expect(2) = e-114
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
>ref|NP_569053.1| vacuolar protein sorting-associated protein 4A [Mus musculus].
Length = 437
Score = 339 bits (869), Expect(2) = 1e-97
Identities = 173/252 (68%), Positives = 195/252 (77%)
Frame = +3
Query: 234 TSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRAKCT 413
T+ LQKAIDL +KA +EDKA NYEEAL+ YQHAV+YFLH IKYEA DKAK++IRAKC
Sbjct: 2 TTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCM 61
Query: 414 EYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQLQGA 593
+YLDRA Q LQ QL GA
Sbjct: 62 QYLDRAEKLKDYLRNKEKHGKKPVKENQSE-----GKGSDSDSEGDNPEKKKLQEQLMGA 116
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
+V+E+PN++W+DVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
Sbjct: 117 VVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 176
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATEANNSTFFSVSSSDL+SKWLGESEKLVKNLF+LAR++KPSIIFIDE+DSLCGSR
Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR 236
Query: 954 SENESEAARKIK 989
+ENESEAAR+IK
Sbjct: 237 NENESEAARRIK 248
Score = 37.0 bits (84), Expect(2) = 1e-97
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDM-MEFWSGSTNIPWVLD 1075
TEFLVQMQGVG + G+TNIPWVLD
Sbjct: 249 TEFLVQMQGVGNNNDGTLVLGATNIPWVLD 278
>ref|NP_081997.1| katanin p60 ATPase-containing subunit A-like 2 [Mus musculus].
Length = 409
Score = 152 bits (385), Expect = 3e-37
Identities = 73/145 (50%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Frame = +3
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
I + PN+KW+D+ GL+ AK+ +KEA++ PI++P LFTG +PW+G+LL+GPPGTGK+ L
Sbjct: 245 IYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLL 304
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATE +TFF++S+S +VSKW G+SEKLV+ LF+LAR + PS IF+DE++S+ R
Sbjct: 305 AKAVATEC-KTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 363
Query: 954 S---ENESEAARKIKQSS*FKCKGL 1019
E E + ++K + GL
Sbjct: 364 GMVPGGEHEGSLRMKTELLVQMDGL 388
>ref|NP_705800.1| katanin p60 ATPase-containing subunit A-like 1 [Mus musculus].
Length = 488
Score = 151 bits (381), Expect = 1e-36
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P++ W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 188 LVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 247
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 248 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 306
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 307 IDSICSRRGTSDEHEASRRVK 327
>ref|NP_035965.2| katanin p60 ATPase-containing subunit A1 [Mus musculus].
Length = 493
Score = 150 bits (380), Expect = 1e-36
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ I+ + PNV+W D+A L AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 193 LVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGP 252
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 253 PGTGKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 311
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + E EA+R++K
Sbjct: 312 IDSICSRRGTSEEHEASRRMK 332
>ref|NP_058658.2| spastin isoform 2 [Mus musculus].
Length = 613
Score = 149 bits (377), Expect = 3e-36
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG E AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 321 LANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 380
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 381 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 439
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 440 VDSLLCERREGEHDASRRLK 459
>ref|NP_001156342.1| spastin isoform 1 [Mus musculus].
Length = 614
Score = 149 bits (377), Expect = 3e-36
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG E AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 322 LANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 381
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 382 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 440
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 441 VDSLLCERREGEHDASRRLK 460
>ref|NP_001156832.1| fidgetin-like protein 1 [Mus musculus].
Length = 683
Score = 143 bits (361), Expect = 2e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 396 IMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTG 455
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 456 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 514
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 515 LSQRGDGEHESSRRIK 530
>ref|NP_001156831.1| fidgetin-like protein 1 [Mus musculus].
Length = 683
Score = 143 bits (361), Expect = 2e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 396 IMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTG 455
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 456 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 514
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 515 LSQRGDGEHESSRRIK 530
>ref|NP_068691.2| fidgetin-like protein 1 [Mus musculus].
Length = 683
Score = 143 bits (361), Expect = 2e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 396 IMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTG 455
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 456 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 514
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 515 LSQRGDGEHESSRRIK 530
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,039,577
Number of extensions: 741793
Number of successful extensions: 2562
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2510
Number of HSP's successfully gapped: 42
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121747.2| PREDICTED: vacuolar protein sorting-associat... 410 e-120
Alignment gi|NP_001230347.1| vacuolar protein sorting 4 homolog A [Sus sc... 343 6e-99
Alignment gi|XP_003361500.1| PREDICTED: katanin p60 ATPase-containing sub... 152 2e-37
Alignment gi|XP_001928701.1| PREDICTED: katanin p60 ATPase-containing sub... 151 7e-37
Alignment gi|XP_003361171.1| PREDICTED: spastin-like, partial [Sus scrofa]. 149 2e-36
Alignment gi|NP_998914.1| spastin [Sus scrofa]. 149 2e-36
Alignment gi|XP_003357655.1| PREDICTED: fidgetin-like protein 1-like [Sus... 143 1e-34
Alignment gi|XP_003353235.1| PREDICTED: katanin p60 ATPase-containing sub... 141 5e-34
Alignment gi|XP_003359338.1| PREDICTED: ATPase family AAA domain-containi... 117 1e-26
Alignment gi|XP_001928012.1| PREDICTED: ATPase family AAA domain-containi... 117 1e-26
>ref|XP_003121747.2| PREDICTED: vacuolar protein sorting-associated protein 4B-like [Sus
scrofa].
Length = 400
Score = 410 bits (1053), Expect(2) = e-120
Identities = 214/255 (83%), Positives = 215/255 (84%)
Frame = +3
Query: 225 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 404
MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA
Sbjct: 1 MASTSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRA 60
Query: 405 KCTEYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQL 584
KCTEYLDRA GQPSPA LQNQL
Sbjct: 61 KCTEYLDRAEKLKEYLKKKESKPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL 120
Query: 585 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 764
QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK
Sbjct: 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGK 180
Query: 765 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 944
SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
Sbjct: 181 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC 240
Query: 945 GSRSENESEAARKIK 989
GSRSENESEAAR+IK
Sbjct: 241 GSRSENESEAARRIK 255
Score = 41.6 bits (96), Expect(2) = e-120
Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDMMEFW-SGSTNIPWVLD 1075
TEFLVQMQGVGVD G+TNIPWVLD
Sbjct: 256 TEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
>ref|NP_001230347.1| vacuolar protein sorting 4 homolog A [Sus scrofa].
Length = 437
Score = 343 bits (879), Expect(2) = 6e-99
Identities = 174/252 (69%), Positives = 196/252 (77%)
Frame = +3
Query: 234 TSPNLQKAIDLASKAAQEDKAGNYEEALQFYQHAVQYFLHIIKYEAQGDKAKQNIRAKCT 413
T+P LQKAIDL +KA +EDKA NYEEAL+ YQHAV+YFLH IKYEA DKAK++IRAKC
Sbjct: 2 TTPTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHNDKAKESIRAKCM 61
Query: 414 EYLDRAXXXXXXXXXXXXXXXXXXXXGQPSPAXXXXXXXXXXXXXXXXXXXXLQNQLQGA 593
+YLDRA Q LQ QL GA
Sbjct: 62 QYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKK-----LQEQLMGA 116
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
+V+E+PN++W+DVAGLEGAKEALKEA+ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
Sbjct: 117 VVVEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 176
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 953
AKAVATEANNSTFFSVSSSDL+SKWLGESEKLVKNLF+LAR++KPSIIFIDE+DSLCGSR
Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR 236
Query: 954 SENESEAARKIK 989
+ENESEAAR+IK
Sbjct: 237 NENESEAARRIK 248
Score = 37.0 bits (84), Expect(2) = 6e-99
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 989 TEFLVQMQGVGVDM-MEFWSGSTNIPWVLD 1075
TEFLVQMQGVG + G+TNIPWVLD
Sbjct: 249 TEFLVQMQGVGNNNDGTLVLGATNIPWVLD 278
>ref|XP_003361500.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Sus
scrofa].
Length = 500
Score = 152 bits (385), Expect = 2e-37
Identities = 73/145 (50%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Frame = +3
Query: 594 IVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 773
I + PN+KW+D+ GL+ AK+ +KEA++ PI++P LFTG +PW+G+LL+GPPGTGK+ L
Sbjct: 206 IYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLL 265
Query: 774 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC--- 944
AKAVATE +TFF++S+S +VSKW G+SEKLV+ LF+LAR + PS IF+DE++S+
Sbjct: 266 AKAVATEC-KTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSHR 324
Query: 945 GSRSENESEAARKIKQSS*FKCKGL 1019
G+ E E + ++K + GL
Sbjct: 325 GTAPGGEHEGSLRMKTELLVQMDGL 349
>ref|XP_001928701.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Sus
scrofa].
Length = 490
Score = 151 bits (381), Expect = 7e-37
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L L+ IV P++ W D+A LE AK+ L+EA++LP+ P F G R PW+G+L+ GP
Sbjct: 190 LVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGP 249
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PGTGK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDE
Sbjct: 250 PGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308
Query: 930 IDSLCGSR-SENESEAARKIK 989
IDS+C R + +E EA+R++K
Sbjct: 309 IDSICSRRGTSDEHEASRRVK 329
>ref|XP_003361171.1| PREDICTED: spastin-like, partial [Sus scrofa].
Length = 358
Score = 149 bits (377), Expect = 2e-36
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG E AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 106 LANFIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 165
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 166 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 224
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 225 VDSLLRERREGEHDASRRLK 244
>ref|NP_998914.1| spastin [Sus scrofa].
Length = 530
Score = 149 bits (377), Expect = 2e-36
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +3
Query: 570 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGP 749
L N + IV VK+ D+AG E AK+AL+E +ILP P LFTG R P RG+LLFGP
Sbjct: 238 LANFIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 297
Query: 750 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 929
PG GK+ LAKAVA E +N+TFF++S++ L SK++GE EKLV+ LF +ARE +PSIIFIDE
Sbjct: 298 PGNGKTMLAKAVAAE-SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDE 356
Query: 930 IDSLCGSRSENESEAARKIK 989
+DSL R E E +A+R++K
Sbjct: 357 VDSLLRERREGEHDASRRLK 376
>ref|XP_003357655.1| PREDICTED: fidgetin-like protein 1-like [Sus scrofa].
Length = 675
Score = 143 bits (361), Expect = 1e-34
Identities = 68/136 (50%), Positives = 98/136 (72%)
Frame = +3
Query: 582 LQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGTG 761
+ I+ P V W D+AG+E AK +KE ++ P+ P +FTG R P +GILLFGPPGTG
Sbjct: 388 IMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTG 447
Query: 762 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 941
K+ + K +A++ + +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDEIDSL
Sbjct: 448 KTLIGKCIASQ-SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 506
Query: 942 CGSRSENESEAARKIK 989
R + E E++R+IK
Sbjct: 507 LSQRGDGEHESSRRIK 522
>ref|XP_003353235.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Sus
scrofa].
Length = 327
Score = 141 bits (356), Expect = 5e-34
Identities = 75/138 (54%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +3
Query: 579 QLQGAIVIERPNVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRTPWRGILLFGPPGT 758
Q+ A + PN + D+A L AK+ LKEA++LP+ P F G R PW+G+L+ GPPGT
Sbjct: 31 QVSPAAPVSNPNPQ-DDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGT 89
Query: 759 GKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDS 938
GK+ LAKAVATE +TFF+VSSS L SK+ GESEKLV+ LF++AR P+ IFIDEIDS
Sbjct: 90 GKTLLAKAVATEC-KTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDS 148
Query: 939 LCGSR-SENESEAARKIK 989
+C R + E EA+R++K
Sbjct: 149 ICSRRGTSEEHEASRRVK 166
>ref|XP_003359338.1| PREDICTED: ATPase family AAA domain-containing protein 1 isoform 2
[Sus scrofa].
Length = 331
Score = 117 bits (292), Expect = 1e-26
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Frame = +3
Query: 612 NVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAV 785
+V WSD+AGL+ LK+ +ILPIK HLF R P +G+LL+GPPG GK+ +AKA
Sbjct: 87 HVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKAT 146
Query: 786 ATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 965
A EA F ++ S L KW GES+KL +F LA + +PSIIFIDEIDS +RS ++
Sbjct: 147 AKEAG-CRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSD 205
Query: 966 SEAARKIK 989
EA +K
Sbjct: 206 HEATAMMK 213
>ref|XP_001928012.1| PREDICTED: ATPase family AAA domain-containing protein 1 isoform 1
[Sus scrofa].
Length = 361
Score = 117 bits (292), Expect = 1e-26
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Frame = +3
Query: 612 NVKWSDVAGLEGAKEALKEAIILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAV 785
+V WSD+AGL+ LK+ +ILPIK HLF R P +G+LL+GPPG GK+ +AKA
Sbjct: 87 HVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKAT 146
Query: 786 ATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 965
A EA F ++ S L KW GES+KL +F LA + +PSIIFIDEIDS +RS ++
Sbjct: 147 AKEAG-CRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSD 205
Query: 966 SEAARKIK 989
EA +K
Sbjct: 206 HEATAMMK 213
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,827,206
Number of extensions: 549785
Number of successful extensions: 1855
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 37
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002514
(1075 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 496 e-137
>Sscrofa_Chr01
|| Length = 315321322
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 2 ctaaggccggaggtgggagttcaggattgcggaagttttgtaaggagggtcgggcggctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175605584 ctaaggccggaggtgggagttcaggattgcggaagttttgtaaggagggtcgggcggctt 175605525
Query: 62 tgagatcgcggtgctgttttcaaataagttgcggaaaggaggccgctgttgggggtttga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175605524 tgagatcgcggtgctgttttcaaataagttgcggaaaggaggccgctgttgggggtttga 175605465
Query: 122 gagcagccagcctacgcacgtttaggggtaactccgggcctgactcggcgttgctgctgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175605464 gagcagccagcctacgcacgtttaggggtaactccgggcctgactcggcgttgctgctgt 175605405
Query: 182 tgtcttctgcctcccttcctcttcggggaatcgcctttccgccatggcatccacctcgcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175605404 tgtcttctgcctcccttcctcttcggggaatcgcctttccgccatggcatccacctcgcc 175605345
Query: 242 caacctccag 251
||||||||||
Sbjct: 175605344 caacctccag 175605335
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 708 ggcaagagaacaccttggcgaggaatcttgttatttgggccacctggtacaggaaaatcc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175576752 ggcaagagaacaccttggcgaggaatcttgttatttgggccacctggtacaggaaaatcc 175576693
Query: 768 tatttagccaaagctgtagcaacagaagcaaacaactcaacatttttctcagtatcttcc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175576692 tatttagccaaagctgtagcaacagaagcaaacaactcaacatttttctcagtatcttcc 175576633
Query: 828 tctgaccttgtttctaagtggctaggtgaaagtgaaaag 866
|||||||||||||||||||||||||||||||||||||||
Sbjct: 175576632 tctgaccttgtttctaagtggctaggtgaaagtgaaaag 175576594
Score = 274 bits (138), Expect = 9e-71
Identities = 148/150 (98%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 866 gctagttaagaacttatttcaacttgccagagagaataaaccttccattatcttcatcga 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175576262 gctagttaagaacttatttcaacttgccagagagaataaaccttccattatcttcatcga 175576203
Query: 926 tgaaattgattctctgtgtggttcaagaagtgaaaatgaaagtgaagctgcacgtaaaat 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 175576202 tgaaattgattctctgtgtggttcaagaagtgaaaatgaaagtgaagctgcacgtagaat 175576143
Query: 986 t-aaacagagttcctagttcaaatgcaagg 1014
| ||||||||||||||||||||||||||||
Sbjct: 175576142 taaaacagagttcctagttcaaatgcaagg 175576113
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 587 aggtgccattgttatagaacgaccaaatgtgaaatggagtgatgttgctggtcttgaagg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175580458 aggtgccattgttatagaacgaccaaatgtgaaatggagtgatgttgctggtcttgaagg 175580399
Query: 647 agccaaagaagcactgaaagaggctattatattgcctattaagtttcctcatctctttac 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175580398 agccaaagaagcactgaaagaggctattatattgcctattaagtttcctcatctctttac 175580339
Query: 707 ggg 709
|||
Sbjct: 175580338 ggg 175580336
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 249 cagaaagcgatagatcttgctagcaaagcagcccaagaagacaaagctgggaactatgag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175588660 cagaaagcgatagatcttgctagcaaagcagcccaagaagacaaagctgggaactatgag 175588601
Query: 309 gaagcccttcaattctaccaacatgctgtgcagtattttctccatataattaaat 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175588600 gaagcccttcaattctaccaacatgctgtgcagtattttctccatataattaaat 175588546
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 364 atgaagcacagggtgataaagccaagcaaaatatcagggcaaagtgtacagaatatctcg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175587364 atgaagcacagggtgataaagccaagcaaaatatcagggcaaagtgtacagaatatctcg 175587305
Query: 424 ac 425
||
Sbjct: 175587304 ac 175587303
Score = 99.6 bits (50), Expect = 3e-18
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 520 ggaatgacagtgatggggaaggagaatctgatgatcctgnnnnnnngaaactacagaatc 579
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 175583767 ggaatgacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatc 175583708
Query: 580 aacttcaaggt 590
|||||||||||
Sbjct: 175583707 aacttcaaggt 175583697
Score = 85.7 bits (43), Expect = 5e-14
Identities = 64/67 (95%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 1012 aggggttggtgtggaca-tgatggaattttggt-ctgggagca-caaatataccctgggt 1068
||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 175575607 aggggttggtgtggacaatgatggaattttggttctgggagcaacaaatataccctgggt 175575548
Query: 1069 tttggat 1075
|||||||
Sbjct: 175575547 tttggat 175575541
Score = 61.9 bits (31), Expect = 7e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 491 gggacaaccaagtccagctgatgagaagggg 521
|||||||||||||||||||||||||||||||
Sbjct: 175587237 gggacaaccaagtccagctgatgagaagggg 175587207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,902,683
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 9
Length of query: 1075
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1054
Effective length of database: 2,808,413,156
Effective search space: 2960067466424
Effective search space used: 2960067466424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)