Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [B... 696 0.0
Alignment gi|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [B... 180 2e-45
Alignment gi|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [B... 172 5e-43
Alignment gi|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bo... 144 2e-34
Alignment gi|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [... 142 7e-34
Alignment gi|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos tauru... 140 3e-33
Alignment gi|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 139 6e-33
Alignment gi|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypepti... 139 6e-33
Alignment gi|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taur... 137 3e-32
Alignment gi|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [B... 135 8e-32
>ref|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus].
Length = 546
Score = 696 bits (1796), Expect(2) = 0.0
Identities = 362/418 (86%), Positives = 369/418 (88%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
MEDPE LGFEHMGLD RLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
Sbjct: 1 MEDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
YAIPMLQLLLHRKA GP VEQAVR LVLVPTK+LARQAQSMIQQLAAYCARDIRVANVSA
Sbjct: 61 YAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSA 120
Query: 396 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEEL 575
AEDSASQRAVLMEKPD+VVGTPSRILNHLQQDNLKLRDS FSFGFEEEL
Sbjct: 121 AEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEEL 180
Query: 576 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
Sbjct: 181 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 240
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 935
EEDKF IRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI
Sbjct: 241 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 300
Query: 936 ISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVL 1115
ISQFNQG YDCVIATDAEVL ++ASDPEAGVARGIDFHHVCAVL
Sbjct: 301 ISQFNQGFYDCVIATDAEVL--GPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVL 358
Query: 1116 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGAPXLLSY 1289
NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQS LG+IEELLSG++GAP LL Y
Sbjct: 359 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSGDSGAPVLLPY 416
Score = 26.9 bits (58), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 1289 QFRMXEIEGFRYR 1327
QF M EIEGFRYR
Sbjct: 417 QFHMEEIEGFRYR 429
>ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus].
Length = 457
Score = 180 bits (457), Expect = 2e-45
Identities = 125/415 (30%), Positives = 196/415 (47%), Gaps = 1/415 (0%)
Frame = +3
Query: 12 ALSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARAR 191
++ +++E E F+ +G+ L +A LGW++PT IQ +AIPLAL+G+D++ A
Sbjct: 12 SMEAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAE 71
Query: 192 TGSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARD 371
TGSGKT A+A+P+L LL Q + LVL PT++LA Q + L + +
Sbjct: 72 TGSGKTGAFALPILNALLE-------TPQRLFALVLTPTRELAFQISEQFEALGS--SIG 122
Query: 372 IRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXF 551
++ A + DS SQ L +KP IV+ TP R+++HL+ +
Sbjct: 123 VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 182
Query: 552 SFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQ 731
+ FE E+ +L +PR + FL SAT + VQ L+ L NPV + S+ ++LQ
Sbjct: 183 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV-SSKYQTVEKLQ 241
Query: 732 QFQVVCETEEDKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGE 908
Q+ + + KF + G S ++F +T + R L L A L+G+
Sbjct: 242 QYYLFIPS---KFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQ 298
Query: 909 LPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGI 1088
+ R +++F ++ATD +RG+
Sbjct: 299 MSQSKRLGSLNKFKAKARSILLATDV-----------------------------ASRGL 329
Query: 1089 DFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
D HV V+NFD+P + YIHR GRTARA G +TFV + +IE L+
Sbjct: 330 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 384
>ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus].
Length = 765
Score = 172 bits (437), Expect = 5e-43
Identities = 120/398 (30%), Positives = 183/398 (45%)
Frame = +3
Query: 48 ELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 227
E L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P
Sbjct: 185 ENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 244
Query: 228 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDS 407
+L+ L+++ P R LVLVPT++L Q S+ +QLA +C+ I D
Sbjct: 245 VLERLIYK----PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCS--ITTCLAVGGLDV 298
Query: 408 ASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLL 587
SQ A L PDI++ TP R+++HL S FEE++K ++
Sbjct: 299 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 588 CHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 767
Q L SAT ++V+ L + L NPV + + + P Q+F + E
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 418
Query: 768 FXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQF 947
+LF T ++++R+ + L + L+G L R + +F
Sbjct: 419 REAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 478
Query: 948 NQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDL 1127
D ++ATD ARG+D V V+NF +
Sbjct: 479 KDEQIDILVATDV-----------------------------AARGLDIEGVKTVINFTM 509
Query: 1128 PPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQI 1241
P T + Y+HR GRTARA G ++ V E+ L +I
Sbjct: 510 PNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
>ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus].
Length = 876
Score = 142 bits (358), Expect = 7e-34
Identities = 108/393 (27%), Positives = 174/393 (44%), Gaps = 1/393 (0%)
Frame = +3
Query: 57 GFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 236
GF+ MGL + + + G+ PT IQ K IP+ L+GKD++A ARTGSGKTA + IPM +
Sbjct: 97 GFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFE 156
Query: 237 LLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQ 416
L A + R L+L PT++LA Q ++L + ++ A + + Q
Sbjct: 157 RLKTHSA-----QTGARALILSPTRELALQTMKFTKELGKFTG--LKTALILGGDKMEDQ 209
Query: 417 RAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHL 596
A L E PDI++ TP R+++ + NLKL+ S F GF E+L+ ++ L
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMNLKLQ-SVEYVVFDEADRLFEMGFAEQLQEIIGRL 268
Query: 597 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQ-ESQLPGPDQLQQFQVVCETEEDKFX 773
P +Q L SAT + + L PV ++L +S+L +QL+ + +
Sbjct: 269 PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKL--NEQLKTSFFLVREDAKAAV 326
Query: 774 XXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQ 953
+ ++++FV T + L L + + L +R +++F
Sbjct: 327 LLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTH 386
Query: 954 GLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPP 1133
G +I TD ARG+D + V+N+ P
Sbjct: 387 GKCSALIVTDL-----------------------------AARGLDIPLLDNVINYSFPA 417
Query: 1134 TPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 1232
+ ++HR GR ARA G + V P E +L
Sbjct: 418 KGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYL 450
>ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus].
Length = 406
Score = 140 bits (352), Expect = 3e-33
Identities = 105/395 (26%), Positives = 181/395 (45%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
+ +A + LVL PT++LA+Q Q ++ L Y A + A +
Sbjct: 94 I-------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH-ACIGGTNVRAEVQ 145
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
+ ME P I+VGTP R+ + L + L + S GF++++ + L
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPK-YIKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTL 263
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
I ++++F+NT + L + ++G++ + R I+ +F G
Sbjct: 264 CDLYETLTIT-QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
+I TD +ARGID V V+N+DLP
Sbjct: 323 SRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTNR 353
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + V ++ L IE
Sbjct: 354 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
>ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus].
Length = 1031
Score = 139 bits (350), Expect = 6e-33
Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 2/396 (0%)
Frame = +3
Query: 72 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 251
G+ ++L ++ G+ +PT IQ +AIP + G+DL+ A+TGSGKT A+ +PM + ++ +
Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 437
Query: 252 KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLM 431
+++ + +++ PT++LA Q ++ + +RV V + Q A L
Sbjct: 438 RSLEEG--EGPIAVIMTPTRELALQITKECKKFSK--TLGLRVVCVYGGTGISEQIAELK 493
Query: 432 EKPDIVVGTPSRILNHLQQDNLKLRD--SXXXXXXXXXXXXFSFGFEEELKSLLCHLPRI 605
+I+V TP R+++ L ++ ++ + F GFE ++ ++ ++
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 606 YQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXXXX 785
Q + SATF ++AL +L P+ +++ + D Q QV+ EE KF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ--QVIVIEEEKKFLKLLE 611
Query: 786 XXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYD 965
G ++FV+ E + L L + S P L+G + R II+ F G
Sbjct: 612 LLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 966 CVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 1145
++AT ARG+D H+ V+N+ P E
Sbjct: 672 LLVATSV-----------------------------AARGLDVKHLILVVNYSCPNHYED 702
Query: 1146 YIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
Y+HRAGRT RA N G TF+ + + G I + L
Sbjct: 703 YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKAL 738
>ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus].
Length = 1031
Score = 139 bits (350), Expect = 6e-33
Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 2/396 (0%)
Frame = +3
Query: 72 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 251
G+ ++L ++ G+ +PT IQ +AIP + G+DL+ A+TGSGKT A+ +PM + ++ +
Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 437
Query: 252 KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLM 431
+++ + +++ PT++LA Q ++ + +RV V + Q A L
Sbjct: 438 RSLEEG--EGPIAVIMTPTRELALQITKECKKFSK--TLGLRVVCVYGGTGISEQIAELK 493
Query: 432 EKPDIVVGTPSRILNHLQQDNLKLRD--SXXXXXXXXXXXXFSFGFEEELKSLLCHLPRI 605
+I+V TP R+++ L ++ ++ + F GFE ++ ++ ++
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 606 YQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXXXX 785
Q + SATF ++AL +L P+ +++ + D Q QV+ EE KF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ--QVIVIEEEKKFLKLLE 611
Query: 786 XXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYD 965
G ++FV+ E + L L + S P L+G + R II+ F G
Sbjct: 612 LLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 966 CVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 1145
++AT ARG+D H+ V+N+ P E
Sbjct: 672 LLVATSV-----------------------------AARGLDVKHLILVVNYSCPNHYED 702
Query: 1146 YIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
Y+HRAGRT RA N G TF+ + + G I + L
Sbjct: 703 YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKAL 738
>ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus].
Length = 407
Score = 137 bits (344), Expect = 3e-32
Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 1/396 (0%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 240 LLHRKAIGPAVE-QAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQ 416
L +E + + LVL PT++LA+Q Q +I L Y A +
Sbjct: 95 L--------EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH-ACIGGTNVRNEM 145
Query: 417 RAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHL 596
+ + E P IVVGTP R+ + L + L + S GF++++ + L
Sbjct: 146 QKLQAEAPHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEADEMLSRGFKDQIYEIFQKL 204
Query: 597 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXX 776
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT-LEGIKQFYINVEREEWKLDT 263
Query: 777 XXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQG 956
I ++++F+NT + L + L+G++ + R I+ +F G
Sbjct: 264 LCDLYETLTIT-QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 957 LYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPT 1136
+I TD +ARGID V V+N+DLP
Sbjct: 323 SSRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTN 353
Query: 1137 PEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + FV ++ L IE
Sbjct: 354 RENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 389
>ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus].
Length = 650
Score = 135 bits (340), Expect = 8e-32
Identities = 105/412 (25%), Positives = 177/412 (42%), Gaps = 5/412 (1%)
Frame = +3
Query: 51 LLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPM 230
+ F H ++ + D ++ PT IQ + PLAL G+D++ A+TGSGKT AY +P
Sbjct: 91 VFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA 150
Query: 231 LQLLLHR----KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAA 398
+ + H+ + GP LVL PT++LA+Q Q + C+R ++ +
Sbjct: 151 IVHINHQPYLERGDGPIC------LVLAPTRELAQQVQQVADDYGK-CSR-LKSTCIYGG 202
Query: 399 EDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELK 578
Q L +I + TP R+++ L+ LR GFE +++
Sbjct: 203 APKGPQIRDLERGVEICIATPGRLIDFLESGKTNLR-RCTYLVLDEADRMLDMGFEPQIR 261
Query: 579 SLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVC-ET 755
++ + Q + SAT+ ++V+ L E L + + + +L + Q VC E+
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES 321
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 935
E+D K+++FV T R L + + PA ++G+ R +
Sbjct: 322 EKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWV 381
Query: 936 ISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVL 1115
+++F G +IATD +RG+D V V+
Sbjct: 382 LNEFRSGKAPILIATDV-----------------------------ASRGLDVEDVKFVI 412
Query: 1116 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGA 1271
N+D P + E Y+HR GRTAR+ N G TF P ++ ++L N A
Sbjct: 413 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQA 464
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,988,715
Number of extensions: 1496713
Number of successful extensions: 8172
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 8012
Number of HSP's successfully gapped: 89
Length of query: 443
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 338
Effective length of database: 14,207,134
Effective search space: 4802011292
Effective search space used: 4802011292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850575.1| PREDICTED: similar to Probable ATP-dependent 61... 534 e-153
Alignment gi|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 180 3e-45
Alignment gi|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RN... 173 3e-43
Alignment gi|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RN... 169 7e-42
Alignment gi|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RN... 144 2e-34
Alignment gi|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RN... 144 2e-34
Alignment gi|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 141 2e-33
Alignment gi|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 p... 141 2e-33
Alignment gi|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RN... 140 2e-33
Alignment gi|XP_851852.1| PREDICTED: similar to eukaryotic translation in... 140 4e-33
>ref|XP_850575.1| PREDICTED: similar to Probable ATP-dependent 61 kDa nucleolar RNA
helicase (DEAD-box protein 56) (DEAD-box protein 21)
[Canis familiaris].
Length = 570
Score = 534 bits (1375), Expect(2) = e-153
Identities = 282/343 (82%), Positives = 290/343 (84%)
Frame = +3
Query: 261 GPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKP 440
G AVEQAVRGLVLVPTK+LARQA+SMIQQLA+YCARDIRVA+VSAAEDSASQRAVLMEKP
Sbjct: 101 GFAVEQAVRGLVLVPTKELARQARSMIQQLASYCARDIRVADVSAAEDSASQRAVLMEKP 160
Query: 441 DIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLPRIYQAFL 620
DIVVGTPSRILNHLQQD+L LRDS FSFGFEEELK LLCHLPRIYQAFL
Sbjct: 161 DIVVGTPSRILNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKGLLCHLPRIYQAFL 220
Query: 621 MSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXXXXXXXXX 800
MSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQL+QFQVVCETEEDKF
Sbjct: 221 MSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCETEEDKFLLLYALLKLS 280
Query: 801 XIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYDCVIAT 980
IRGK LLFVNTLERSYRLRLFLEQFSIPACVLNGELPL SRCHIISQFNQG YDCVIAT
Sbjct: 281 LIRGKCLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLCSRCHIISQFNQGFYDCVIAT 340
Query: 981 DAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRA 1160
DAEVL RASDPEAGVARGIDFHHV +VLNFDLPPTPEAYIHRA
Sbjct: 341 DAEVL--GSLVKGRRRGRGSRGTRASDPEAGVARGIDFHHVSSVLNFDLPPTPEAYIHRA 398
Query: 1161 GRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGAPXLLSY 1289
GRTARANNPG+VLTFVLPTEQSHL IEELLSGEN AP LL Y
Sbjct: 399 GRTARANNPGMVLTFVLPTEQSHLDTIEELLSGENRAPVLLPY 441
Score = 28.9 bits (63), Expect(2) = e-153
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 1289 QFRMXEIEGFRYR 1327
QFRM EIEGFRYR
Sbjct: 442 QFRMEEIEGFRYR 454
>ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 isoform 1 [Canis familiaris].
Length = 456
Score = 180 bits (456), Expect = 3e-45
Identities = 124/408 (30%), Positives = 194/408 (47%), Gaps = 1/408 (0%)
Frame = +3
Query: 33 SMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTA 212
++++ E F+ +G+ L +A LGW++PT IQ +AIPLAL+G+D++ A TGSGKT
Sbjct: 17 AVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTG 76
Query: 213 AYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVS 392
A+A+P+L LL Q + LVL PT++LA Q + L + + ++ A +
Sbjct: 77 AFALPILNALLE-------TPQRLFALVLTPTRELAFQISEQFEALGS--SIGVQSAVIV 127
Query: 393 AAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEE 572
DS SQ L +KP IV+ TP R+++HL+ + + FE E
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETE 187
Query: 573 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCE 752
+ +L +PR + FL SAT + VQ L+ L NPV + S+ ++LQQ+ +
Sbjct: 188 VDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV-SSKYQTVEKLQQYYLFIP 246
Query: 753 TEEDKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRC 929
+ KF + G S ++F +T + R L L A L+G++ R
Sbjct: 247 S---KFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRL 303
Query: 930 HIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCA 1109
+++F ++ATD +RG+D HV
Sbjct: 304 GSLNKFKAKARSILLATDV-----------------------------ASRGLDIPHVDV 334
Query: 1110 VLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
V+NFD+P + YIHR GRTARA G +TFV + +IE L+
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 382
>ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
(DEAD-box protein 27) isoform 1 [Canis familiaris].
Length = 765
Score = 173 bits (439), Expect = 3e-43
Identities = 120/398 (30%), Positives = 183/398 (45%)
Frame = +3
Query: 48 ELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 227
E L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P
Sbjct: 183 ENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 242
Query: 228 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDS 407
+L+ L+++ P R LVLVPT++L Q S+ +QLA +C +I D
Sbjct: 243 VLERLIYK----PRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFC--NITTCLAVGGLDV 296
Query: 408 ASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLL 587
SQ A L PDI++ TP R+++HL S FEE++K ++
Sbjct: 297 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 356
Query: 588 CHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 767
Q L SAT ++V+ L + L NPV + + + P Q+F + E
Sbjct: 357 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGD 416
Query: 768 FXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQF 947
+LF T ++++R+ + L + L+G L R + +F
Sbjct: 417 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 476
Query: 948 NQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDL 1127
D ++ATD ARG+D V V+NF +
Sbjct: 477 KDEQIDILVATDV-----------------------------AARGLDIEGVKTVINFTM 507
Query: 1128 PPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQI 1241
P T + Y+HR GRTARA G ++ V E+ L +I
Sbjct: 508 PNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 545
>ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
(DEAD-box protein 27) isoform 2 [Canis familiaris].
Length = 763
Score = 169 bits (427), Expect = 7e-42
Identities = 119/398 (29%), Positives = 182/398 (45%)
Frame = +3
Query: 48 ELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 227
E L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P
Sbjct: 183 ENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 242
Query: 228 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDS 407
+L+ L+++ P R LVLVPT++L Q S+ +QLA + A + D
Sbjct: 243 VLERLIYK----PRQSPVTRVLVLVPTRELGIQVHSVTKQLAHHLAGLFSAGGL----DV 294
Query: 408 ASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLL 587
SQ A L PDI++ TP R+++HL S FEE++K ++
Sbjct: 295 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 354
Query: 588 CHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 767
Q L SAT ++V+ L + L NPV + + + P Q+F + E
Sbjct: 355 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGD 414
Query: 768 FXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQF 947
+LF T ++++R+ + L + L+G L R + +F
Sbjct: 415 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 474
Query: 948 NQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDL 1127
D ++ATD ARG+D V V+NF +
Sbjct: 475 KDEQIDILVATDV-----------------------------AARGLDIEGVKTVINFTM 505
Query: 1128 PPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQI 1241
P T + Y+HR GRTARA G ++ V E+ L +I
Sbjct: 506 PNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 543
>ref|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
(DEAD-box protein 6) (ATP-dependent RNA helicase p54)
(Oncogene RCK) isoform 1 [Canis familiaris].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
(DEAD-box protein 6) (ATP-dependent RNA helicase p54)
(Oncogene RCK) isoform 2 [Canis familiaris].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
isoform 3 [Canis familiaris].
Length = 533
Score = 141 bits (355), Expect = 2e-33
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 92 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 151
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 152 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 207
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 208 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 266
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 267 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 325
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 326 TRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 385
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 386 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 416
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 417 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 458
>ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
[Canis familiaris].
Length = 696
Score = 141 bits (355), Expect = 2e-33
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 315 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 370
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 488
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 489 TRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 549 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 579
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 580 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 621
>ref|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
(DEAD-box protein 6) (ATP-dependent RNA helicase p54)
(Oncogene RCK) isoform 4 [Canis familiaris].
Length = 490
Score = 140 bits (354), Expect = 2e-33
Identities = 114/420 (27%), Positives = 184/420 (43%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKKDNIQGYIIGKITMVIVPTRELALQ----VSQICIQVSKHM 198
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 199 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 257
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 258 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 317
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 318 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 372
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 373 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 403
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 404 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 463
>ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
isoform 1 isoform 2 [Canis familiaris].
Length = 406
Score = 140 bits (352), Expect = 4e-33
Identities = 105/395 (26%), Positives = 181/395 (45%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
+ +A + LVL PT++LA+Q Q ++ L Y A + A +
Sbjct: 94 I-------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH-ACIGGTNVRAEVQ 145
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
+ ME P I+VGTP R+ + L + L + S GF++++ + L
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPK-YIKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTL 263
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
I ++++F+NT + L + ++G++ + R I+ +F G
Sbjct: 264 CDLYETLTIT-QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
+I TD +ARGID V V+N+DLP
Sbjct: 323 SRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTNR 353
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + V ++ L IE
Sbjct: 354 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,193,509
Number of extensions: 1544731
Number of successful extensions: 8738
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 8468
Number of HSP's successfully gapped: 208
Length of query: 443
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 337
Effective length of database: 15,340,888
Effective search space: 5169879256
Effective search space used: 5169879256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061955.1| probable ATP-dependent RNA helicase DDX56 [Homo... 685 0.0
Alignment gi|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isofo... 181 1e-45
Alignment gi|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo... 172 5e-43
Alignment gi|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo ... 144 2e-34
Alignment gi|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]. 141 2e-33
Alignment gi|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]. 141 2e-33
Alignment gi|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo... 140 3e-33
Alignment gi|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Ho... 140 3e-33
Alignment gi|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo... 139 6e-33
Alignment gi|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapien... 137 3e-32
>ref|NP_061955.1| probable ATP-dependent RNA helicase DDX56 [Homo sapiens].
Length = 547
Score = 685 bits (1768), Expect(2) = 0.0
Identities = 355/418 (84%), Positives = 364/418 (87%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
MED E LGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
Sbjct: 1 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
YAIPMLQLLLHRKA GP VEQAVRGLVLVPTK+LARQAQSMIQQLA YCARD+RVANVSA
Sbjct: 61 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA 120
Query: 396 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEEL 575
AEDS SQRAVLMEKPD+VVGTPSRIL+HLQQD+LKLRDS FSFGFEEEL
Sbjct: 121 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL 180
Query: 576 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
KSLLCHLPRIYQAFLMSATFNEDVQALKEL+LHNPVTLKLQESQLPGPDQLQQFQVVCET
Sbjct: 181 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET 240
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 935
EEDKF IRGKSLLFVNTLERSYRLRLFLEQFSIP CVLNGELPLRSRCHI
Sbjct: 241 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI 300
Query: 936 ISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVL 1115
ISQFNQG YDCVIATDAEVL ++ASDPEAGVARGIDFHHV AVL
Sbjct: 301 ISQFNQGFYDCVIATDAEVL--GAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVL 358
Query: 1116 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGAPXLLSY 1289
NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQ HLG+IEELLSGEN P LL Y
Sbjct: 359 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPY 416
Score = 28.9 bits (63), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 1289 QFRMXEIEGFRYR 1327
QFRM EIEGFRYR
Sbjct: 417 QFRMEEIEGFRYR 429
>ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens].
Length = 455
Score = 181 bits (459), Expect = 1e-45
Identities = 124/407 (30%), Positives = 193/407 (47%), Gaps = 1/407 (0%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
+E+ E F+ +G+ L +A LGW++PT IQ +AIPLAL+G+D++ A TGSGKT A
Sbjct: 18 VEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGA 77
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
+A+P+L LL Q + LVL PT++LA Q + L + + ++ A +
Sbjct: 78 FALPILNALLE-------TPQRLFALVLTPTRELAFQISEQFEALGS--SIGVQSAVIVG 128
Query: 396 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEEL 575
DS SQ L +KP I++ TP R+++HL+ + + FE E+
Sbjct: 129 GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV 188
Query: 576 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
+L +PR + FL SAT + VQ L+ L NPV + S+ ++LQQ+ + +
Sbjct: 189 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV-SSKYQTVEKLQQYYIFIPS 247
Query: 756 EEDKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCH 932
KF + G S ++F +T + R L L A L+G++ R
Sbjct: 248 ---KFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLG 304
Query: 933 IISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAV 1112
+++F ++ATD +RG+D HV V
Sbjct: 305 SLNKFKAKARSILLATDV-----------------------------ASRGLDIPHVDVV 335
Query: 1113 LNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
+NFD+P + YIHR GRTARA G +TFV + +IE L+
Sbjct: 336 VNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 382
>ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens].
Length = 796
Score = 172 bits (437), Expect = 5e-43
Identities = 120/398 (30%), Positives = 183/398 (45%)
Frame = +3
Query: 48 ELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 227
E L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P
Sbjct: 216 ENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 275
Query: 228 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDS 407
+L+ L+++ P R LVLVPT++L Q S+ +QLA +C +I D
Sbjct: 276 VLERLIYK----PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFC--NITTCLAVGGLDV 329
Query: 408 ASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLL 587
SQ A L PDI++ TP R+++HL S FEE++K ++
Sbjct: 330 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 389
Query: 588 CHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 767
Q L SAT ++V+ L + L NPV + + + P Q+F + E
Sbjct: 390 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 449
Query: 768 FXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQF 947
+LF T ++++R+ + L + L+G L R + +F
Sbjct: 450 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 509
Query: 948 NQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDL 1127
D ++ATD ARG+D V V+NF +
Sbjct: 510 KDEQIDILVATDV-----------------------------AARGLDIEGVKTVINFTM 540
Query: 1128 PPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQI 1241
P T + Y+HR GRTARA G ++ V E+ L +I
Sbjct: 541 PNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens].
Length = 938
Score = 141 bits (355), Expect = 2e-33
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 315 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 370
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 488
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 489 TRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 549 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 579
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 580 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 621
>ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens].
Length = 938
Score = 141 bits (355), Expect = 2e-33
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 315 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 370
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 488
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 489 TRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 549 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 579
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 580 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 621
>ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens].
Length = 483
Score = 140 bits (353), Expect = 3e-33
Identities = 110/403 (27%), Positives = 171/403 (42%), Gaps = 4/403 (0%)
Frame = +3
Query: 51 LLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPM 230
+ GF +GL L++ LG +PT +Q IP LEG+D L A+TGSGKTAA+ +P+
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60
Query: 231 LQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSA 410
LQ L + LVL PT++LA Q + L ++ + D
Sbjct: 61 LQKLSED-------PYGIFCLVLTPTRELAYQIAEQFRVLGK--PLGLKDCIIVGGMDMV 111
Query: 411 SQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFG---FEEELKS 581
+Q L KP +V+ TP R+ +HL+ N G F +L++
Sbjct: 112 AQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 582 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 761
+L +P Q L SAT + ++ L+ L + P + Q Q++ +V E +
Sbjct: 172 ILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVK 231
Query: 762 DKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHII 938
D + S ++F NT + L + L +FS P L+ + + R +
Sbjct: 232 DAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAAL 291
Query: 939 SQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLN 1118
++F +Y +IATD +RG+D V V+N
Sbjct: 292 AKFKSSIYRILIATDV-----------------------------ASRGLDIPTVQVVIN 322
Query: 1119 FDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEE 1247
+ P P+ YIHR GRTARA G +T V + + IEE
Sbjct: 323 HNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
>ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens].
Length = 406
Score = 140 bits (352), Expect = 3e-33
Identities = 105/395 (26%), Positives = 181/395 (45%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
+ +A + LVL PT++LA+Q Q ++ L Y A + A +
Sbjct: 94 I-------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH-ACIGGTNVRAEVQ 145
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
+ ME P I+VGTP R+ + L + L + S GF++++ + L
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPK-YIKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTL 263
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
I ++++F+NT + L + ++G++ + R I+ +F G
Sbjct: 264 CDLYETLTIT-QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
+I TD +ARGID V V+N+DLP
Sbjct: 323 SRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTNR 353
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + V ++ L IE
Sbjct: 354 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
>ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens].
Length = 1031
Score = 139 bits (350), Expect = 6e-33
Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 2/396 (0%)
Frame = +3
Query: 72 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 251
G+ ++L ++ G+ +PT IQ +AIP + G+DL+ A+TGSGKT A+ +PM + ++ +
Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 437
Query: 252 KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLM 431
+++ + +++ PT++LA Q ++ + +RV V + Q A L
Sbjct: 438 RSLEEG--EGPIAVIMTPTRELALQITKECKKFSK--TLGLRVVCVYGGTGISEQIAELK 493
Query: 432 EKPDIVVGTPSRILNHLQQDNLKLRD--SXXXXXXXXXXXXFSFGFEEELKSLLCHLPRI 605
+I+V TP R+++ L ++ ++ + F GFE ++ ++ ++
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 606 YQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXXXX 785
Q + SATF ++AL +L P+ +++ + D Q QV+ EE KF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ--QVIVIEEEKKFLKLLE 611
Query: 786 XXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYD 965
G ++FV+ E + L L + S P L+G + R II+ F G
Sbjct: 612 LLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 966 CVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 1145
++AT ARG+D H+ V+N+ P E
Sbjct: 672 LLVATSV-----------------------------AARGLDVKHLILVVNYSCPNHYED 702
Query: 1146 YIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
Y+HRAGRT RA N G TF+ + + G I + L
Sbjct: 703 YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKAL 738
>ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens].
Length = 407
Score = 137 bits (344), Expect = 3e-32
Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 1/396 (0%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 240 LLHRKAIGPAVE-QAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQ 416
L +E + + LVL PT++LA+Q Q +I L Y A +
Sbjct: 95 L--------EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH-ACIGGTNVRNEM 145
Query: 417 RAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHL 596
+ + E P IVVGTP R+ + L + L + S GF++++ + L
Sbjct: 146 QKLQAEAPHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEADEMLSRGFKDQIYEIFQKL 204
Query: 597 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXX 776
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT-LEGIKQFYINVEREEWKLDT 263
Query: 777 XXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQG 956
I ++++F+NT + L + L+G++ + R I+ +F G
Sbjct: 264 LCDLYETLTIT-QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 957 LYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPT 1136
+I TD +ARGID V V+N+DLP
Sbjct: 323 SSRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTN 353
Query: 1137 PEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + FV ++ L IE
Sbjct: 354 RENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,988,334
Number of extensions: 1493592
Number of successful extensions: 7742
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 7552
Number of HSP's successfully gapped: 97
Length of query: 443
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 337
Effective length of database: 14,802,980
Effective search space: 4988604260
Effective search space used: 4988604260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus ... 664 0.0
Alignment gi|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus ... 181 1e-45
Alignment gi|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus ... 172 5e-43
Alignment gi|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mu... 144 2e-34
Alignment gi|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus m... 144 2e-34
Alignment gi|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus m... 144 2e-34
Alignment gi|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [M... 143 3e-34
Alignment gi|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]. 141 1e-33
Alignment gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu... 140 3e-33
Alignment gi|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus ... 139 5e-33
>ref|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus musculus].
Length = 546
Score = 664 bits (1713), Expect(2) = 0.0
Identities = 342/418 (81%), Positives = 360/418 (86%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
MED E LGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
Sbjct: 1 MEDQEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
YAIPMLQ LLH+KA GP +EQAVRGLVLVPTK+LARQAQ+MIQQLAAYCARD+RVANVSA
Sbjct: 61 YAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSA 120
Query: 396 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEEL 575
AEDSASQRAVLMEKPD+VVGTPSR+L+HLQQ+ LKLRDS FSFGFE+EL
Sbjct: 121 AEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDEL 180
Query: 576 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
KSLLCHLPRIYQAFLMSATFNEDVQ LKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
Sbjct: 181 KSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 240
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 935
EEDKF IRGK+LLFVNTLER YRLRLFLEQFSIP+CVLNGELPLRSRCHI
Sbjct: 241 EEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHI 300
Query: 936 ISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVL 1115
ISQFNQGLYDCVIATDAE+L +ASDPE+GVARGIDFHHV AVL
Sbjct: 301 ISQFNQGLYDCVIATDAEIL--GPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVL 358
Query: 1116 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGAPXLLSY 1289
NFDLPPT EAY+HRAGRTARANNPGIVLTFVLP EQ LG+IE+LLSGE AP LL Y
Sbjct: 359 NFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSGEGEAPILLPY 416
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +2
Query: 1268 GAXPAFL--QFRMXEIEGFRYR 1327
G P L QF+M EIE FRYR
Sbjct: 408 GEAPILLPYQFQMEEIESFRYR 429
>ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus].
Length = 455
Score = 181 bits (459), Expect = 1e-45
Identities = 125/409 (30%), Positives = 194/409 (47%), Gaps = 1/409 (0%)
Frame = +3
Query: 30 SSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKT 209
++ E+ E F+ +G+ L +A LGW++PT IQ +AIPLAL+G+D++ A TGSGKT
Sbjct: 16 TAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
Query: 210 AAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANV 389
A+A+P+L LL Q + LVL PT++LA Q + L + + ++ A +
Sbjct: 76 GAFALPILNALLE-------TPQRLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVI 126
Query: 390 SAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEE 569
DS SQ L +KP IV+ TP R+++HL+ + + FE
Sbjct: 127 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 186
Query: 570 ELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVC 749
E+ +L +PR + FL SAT + VQ L+ L NPV + S+ ++LQQ+ +
Sbjct: 187 EVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV-SSKYQTVEKLQQYYLFI 245
Query: 750 ETEEDKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSR 926
+ KF + G S ++F +T + R L L A L+G++ R
Sbjct: 246 PS---KFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKR 302
Query: 927 CHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVC 1106
+++F ++ATD +RG+D HV
Sbjct: 303 LGSLNKFKAKARSILLATDV-----------------------------ASRGLDIPHVD 333
Query: 1107 AVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
V+NFD+P + YIHR GRTARA G +TFV + +IE L+
Sbjct: 334 VVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 382
>ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus].
Length = 760
Score = 172 bits (436), Expect = 5e-43
Identities = 119/396 (30%), Positives = 182/396 (45%)
Frame = +3
Query: 54 LGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPML 233
L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P+L
Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243
Query: 234 QLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSAS 413
+ L+++ P R LVLVPT++L Q S+ +QLA +C+ I D S
Sbjct: 244 ERLIYK----PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCS--ITTCLAVGGLDVKS 297
Query: 414 QRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCH 593
Q A L PDI++ TP R+++HL S FEE++K ++
Sbjct: 298 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
Query: 594 LPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFX 773
Q L SAT ++V+ L + L NPV + + + P Q+F + E
Sbjct: 358 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 417
Query: 774 XXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQ 953
+LF T ++++R+ + L + L+G L R + +F
Sbjct: 418 AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKD 477
Query: 954 GLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPP 1133
D ++ATD ARG+D V V+NF +P
Sbjct: 478 EQIDILVATDV-----------------------------AARGLDIEGVKTVINFTMPN 508
Query: 1134 TPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQI 1241
T + Y+HR GRTARA G ++ V E+ L +I
Sbjct: 509 TVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
>ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus musculus].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus].
Length = 483
Score = 144 bits (362), Expect = 2e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus].
Length = 480
Score = 143 bits (361), Expect = 3e-34
Identities = 110/403 (27%), Positives = 173/403 (42%), Gaps = 4/403 (0%)
Frame = +3
Query: 51 LLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPM 230
+ GF +GL L++ LG +PT +Q IP LEG+D L A+TGSGKTAA+ +P+
Sbjct: 1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60
Query: 231 LQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSA 410
LQ L + LVL PT++LA Q + L ++ + D
Sbjct: 61 LQKLSED-------PYGIFCLVLTPTRELAYQIAEQFRVLGK--PLGLKDCIIVGGMDMV 111
Query: 411 SQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFG---FEEELKS 581
+Q L KP +V+ TP R+ +HL+ N G F +L++
Sbjct: 112 AQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLET 171
Query: 582 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 761
+L +P Q L SAT + ++ L+ L + P + Q + Q++ +V E +
Sbjct: 172 ILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVK 231
Query: 762 DKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHII 938
D + + S ++F NT + L + L +F+ P L+ + + R +
Sbjct: 232 DAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAAL 291
Query: 939 SQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLN 1118
++F +Y +IATD +RG+D V V+N
Sbjct: 292 AKFKSSIYRILIATDV-----------------------------ASRGLDIPTVQVVIN 322
Query: 1119 FDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEE 1247
+ P P+ YIHR GRTARA G +T V + L IEE
Sbjct: 323 HNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEE 365
>ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus].
Length = 929
Score = 141 bits (356), Expect = 1e-33
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 315 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 370
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 488
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 489 TRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 549 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 579
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 580 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 621
>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
Length = 406
Score = 140 bits (352), Expect = 3e-33
Identities = 105/395 (26%), Positives = 181/395 (45%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
+ +A + LVL PT++LA+Q Q ++ L Y A + A +
Sbjct: 94 I-------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH-ACIGGTNVRAEVQ 145
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
+ ME P I+VGTP R+ + L + L + S GF++++ + L
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPK-YIKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTL 263
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
I ++++F+NT + L + ++G++ + R I+ +F G
Sbjct: 264 CDLYETLTIT-QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
+I TD +ARGID V V+N+DLP
Sbjct: 323 SRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTNR 353
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + V ++ L IE
Sbjct: 354 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
>ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus].
Length = 1031
Score = 139 bits (350), Expect = 5e-33
Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 2/396 (0%)
Frame = +3
Query: 72 GLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 251
G+ ++L ++ G+ +PT IQ +AIP + G+DL+ A+TGSGKT A+ +PM + ++ +
Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 437
Query: 252 KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLM 431
+++ + +++ PT++LA Q ++ + +RV V + Q A L
Sbjct: 438 RSLEEG--EGPIAVIMTPTRELALQITKECKKFSK--TLGLRVVCVYGGTGISEQIAELK 493
Query: 432 EKPDIVVGTPSRILNHLQQDNLKLRD--SXXXXXXXXXXXXFSFGFEEELKSLLCHLPRI 605
+I+V TP R+++ L ++ ++ + F GFE ++ ++ ++
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 606 YQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXXXX 785
Q + SATF ++AL +L P+ +++ + D Q QV+ EE KF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ--QVIVIEEEKKFLKLLE 611
Query: 786 XXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYD 965
G ++FV+ E + L L + S P L+G + R II+ F G
Sbjct: 612 LLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 966 CVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTPEA 1145
++AT ARG+D H+ V+N+ P E
Sbjct: 672 LLVATSV-----------------------------AARGLDVKHLILVVNYSCPNHYED 702
Query: 1146 YIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELL 1253
Y+HRAGRT RA N G TF+ + + G I + L
Sbjct: 703 YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKAL 738
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,820,889
Number of extensions: 1238750
Number of successful extensions: 6474
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 6297
Number of HSP's successfully gapped: 111
Length of query: 443
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 339
Effective length of database: 12,493,815
Effective search space: 4235403285
Effective search space used: 4235403285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134927.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 706 0.0
Alignment gi|XP_003360249.1| PREDICTED: probable ATP-dependent RNA helica... 246 2e-65
Alignment gi|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helica... 172 5e-43
Alignment gi|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 154 8e-38
Alignment gi|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helica... 144 1e-34
Alignment gi|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helica... 144 1e-34
Alignment gi|XP_003131337.2| PREDICTED: ATP-dependent RNA helicase DDX42 ... 141 9e-34
Alignment gi|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrof... 140 2e-33
Alignment gi|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helica... 140 2e-33
Alignment gi|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helica... 140 2e-33
>ref|XP_003134927.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Sus scrofa].
Length = 546
Score = 706 bits (1823), Expect = 0.0
Identities = 367/418 (87%), Positives = 368/418 (88%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEK IPLALEGKD A G GKTAA
Sbjct: 1 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKXIPLALEGKDSWLGAARGQGKTAA 60
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA
Sbjct: 61 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 120
Query: 396 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEEL 575
AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDS FSFGFEEEL
Sbjct: 121 AEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEEEL 180
Query: 576 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
Sbjct: 181 KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 240
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 935
EEDKF IRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI
Sbjct: 241 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI 300
Query: 936 ISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVL 1115
ISQFNQGLYDCVIATDAEVL ERASDPEAGVARGIDFHHVCAVL
Sbjct: 301 ISQFNQGLYDCVIATDAEVLGPPVKGKGKQRGKGPKGERASDPEAGVARGIDFHHVCAVL 360
Query: 1116 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGENGAPXLLSY 1289
NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLG+IEELLSGENGAP LL Y
Sbjct: 361 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGENGAPALLPY 418
>ref|XP_003360249.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Sus
scrofa].
Length = 131
Score = 246 bits (628), Expect = 2e-65
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +3
Query: 36 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 215
MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
Sbjct: 1 MEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
Query: 216 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 395
YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA
Sbjct: 61 YAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSA 120
Query: 396 AEDSASQ 416
AEDSASQ
Sbjct: 121 AEDSASQ 127
>ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa].
Length = 473
Score = 172 bits (435), Expect = 5e-43
Identities = 118/384 (30%), Positives = 184/384 (47%), Gaps = 1/384 (0%)
Frame = +3
Query: 30 SSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKT 209
+++E+ E F+ +G+ L +A LGW++PT IQ +AIPLAL+G+D++ A TGSGKT
Sbjct: 69 TAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 128
Query: 210 AAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANV 389
A+A+P+L LL Q + LVL PT++LA Q + L + + ++ A +
Sbjct: 129 GAFALPILNALLE-------TPQRLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVI 179
Query: 390 SAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEE 569
DS SQ L +KP IV+ TP R+++HL+ + + FE
Sbjct: 180 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 239
Query: 570 ELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVC 749
E+ +L +PR + FL SAT + VQ L+ L NPV + S+ ++LQQ+ +
Sbjct: 240 EVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV-SSKYQTVEKLQQYYLFI 298
Query: 750 ETEEDKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSR 926
+ KF + G S ++F +T + R L L A L+G++ R
Sbjct: 299 PS---KFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKR 355
Query: 927 CHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVC 1106
+++F ++ATD +RG+D HV
Sbjct: 356 LGSLNKFKAKARSILLATDV-----------------------------ASRGLDIPHVD 386
Query: 1107 AVLNFDLPPTPEAYIHRAGRTARA 1178
V+NFD+P + YIHR GRTARA
Sbjct: 387 VVVNFDIPTHSKDYIHRVGRTARA 410
>ref|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like, partial [Sus scrofa].
Length = 757
Score = 154 bits (390), Expect = 8e-38
Identities = 117/386 (30%), Positives = 177/386 (45%), Gaps = 5/386 (1%)
Frame = +3
Query: 48 ELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 227
E L F+ M L LL+A+T +G+ +PT IQ+ IP+ L GKD+ A A TG+GKTAA+A+P
Sbjct: 204 ENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 263
Query: 228 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDS 407
+L+ L+++ P R LVLVPT++L Q S+ +QLA + + + D
Sbjct: 264 VLERLIYK----PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFXXXXXXL--FAGGLDV 317
Query: 408 ASQRAVL--MEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKS 581
SQ A L PDI++ TP R+++HL S FEE++K
Sbjct: 318 KSQEAALRAAPXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKE 377
Query: 582 L--LCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET 755
+ +C L R Q L SAT ++V+ L + L NPV + + + P Q+F +
Sbjct: 378 IIRMCSLHR--QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN 435
Query: 756 EEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSR-CH 932
E +LF T ++++R+ + L + L+G L R
Sbjct: 436 REGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLE 495
Query: 933 IISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAV 1112
+ +F D ++ATD ARG+D V V
Sbjct: 496 ALWRFKDEQIDILVATDV-----------------------------AARGLDIEGVKTV 526
Query: 1113 LNFDLPPTPEAYIHRAGRTARANNPG 1190
+NF +P T + Y+HR GRTARA G
Sbjct: 527 INFTMPNTIKHYVHRVGRTARAGRAG 552
>ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Sus
scrofa].
Length = 483
Score = 144 bits (362), Expect = 1e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Sus
scrofa].
Length = 483
Score = 144 bits (362), Expect = 1e-34
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 4/420 (0%)
Frame = +3
Query: 15 LSLQNSSMEDPELLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARART 194
L ++ S + + FE L LL + ++GW +P+ IQE++IP+AL G+D+LARA+
Sbjct: 83 LRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 142
Query: 195 GSGKTAAYAIPMLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI 374
G+GK+ AY IP+L+ L +K ++ +V+VPT++LA Q + Q+ ++ +
Sbjct: 143 GTGKSGAYLIPLLERLDLKK-------DNIQAMVIVPTRELALQ----VSQICIQVSKHM 191
Query: 375 RVANVSAAEDSASQRAVLMEKPD---IVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXX 545
A V A + R +M D +V+ TP RIL+ +++ K+ D
Sbjct: 192 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADK 250
Query: 546 XFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKL-QESQLPGPD 722
S F + ++ ++ LP+ Q L SATF VQ L P + L +E L G
Sbjct: 251 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT 310
Query: 723 QLQQFQVVCETEEDKFXXXXXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLN 902
Q + TE K I +S++F N+ +R L + Q ++
Sbjct: 311 QYYAY----VTERQKVHCLNTLFSRLQI-NQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 903 GELPLRSRCHIISQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVAR 1082
++ R + F GL ++ TD R
Sbjct: 366 AKMRQEHRNRVFHDFRNGLCRNLVCTDL-----------------------------FTR 396
Query: 1083 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGE 1262
GID V V+NFD P E Y+HR GR+ R + G+ + + ++ +L IEE L E
Sbjct: 397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 456
>ref|XP_003131337.2| PREDICTED: ATP-dependent RNA helicase DDX42 [Sus scrofa].
Length = 941
Score = 141 bits (355), Expect = 9e-34
Identities = 102/402 (25%), Positives = 179/402 (44%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F H G D +L+ + +++PT IQ + +P+AL G+D++ A+TGSGKTAA+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
++ +K + P +++ PT++L +Q + ++ A ++R V Q
Sbjct: 315 IMDQKELEPG--DGPIAVIVCPTRELCQQIHAECKRFGK--AYNLRSVAVYGGGSMWEQA 370
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
L E +IVV TP R+++H+++ L+ F GFE +++S+ H+
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L SATF + ++ L +L +P+ + +Q + + Q + + K+
Sbjct: 430 PDRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEILHSGPSKWNWL 488
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
G LLFV + L L+Q +L+G++ R +IS F +
Sbjct: 489 TRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
++ATD ARG+D + V+N+D+
Sbjct: 549 IPVLVATDV-----------------------------AARGLDIPSIKTVINYDVARDI 579
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEELLSGEN 1265
+ + HR GRT RA G+ T + P + + G + L G N
Sbjct: 580 DTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGAN 621
>ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa].
Length = 406
Score = 140 bits (352), Expect = 2e-33
Identities = 105/395 (26%), Positives = 181/395 (45%)
Frame = +3
Query: 60 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 239
F+ M L LL+ + G+ +P+ IQ++AI ++G D++A+A++G+GKTA +AI +LQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 240 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 419
+ +A + LVL PT++LA+Q Q ++ L Y A + A +
Sbjct: 94 I-------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH-ACIGGTNVRAEVQ 145
Query: 420 AVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFGFEEELKSLLCHLP 599
+ ME P I+VGTP R+ + L + L + S GF++++ + L
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPK-YIKMFVLDEADEMLSRGFKDQIYDIFQKLN 204
Query: 600 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFXXX 779
Q L+SAT DV + + + +P+ + +++ +L + ++QF + E EE K
Sbjct: 205 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTL 263
Query: 780 XXXXXXXXIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGL 959
I ++++F+NT + L + ++G++ + R I+ +F G
Sbjct: 264 CDLYETLTIT-QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 960 YDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLNFDLPPTP 1139
+I TD +ARGID V V+N+DLP
Sbjct: 323 SRVLITTDL-----------------------------LARGIDVQQVSLVINYDLPTNR 353
Query: 1140 EAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIE 1244
E YIHR GR R G+ + V ++ L IE
Sbjct: 354 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
>ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
scrofa].
Length = 483
Score = 140 bits (352), Expect = 2e-33
Identities = 109/403 (27%), Positives = 171/403 (42%), Gaps = 4/403 (0%)
Frame = +3
Query: 51 LLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPM 230
+ GF +GL L++ LG +PT +Q IP LEG+D L A+TGSGKTAA+ +P+
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60
Query: 231 LQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSA 410
LQ L + LVL PT++LA Q + L ++ + D
Sbjct: 61 LQKLSED-------PYGIFCLVLTPTRELAYQIAEQFRVLGK--PLGLKDCIIVGGMDMV 111
Query: 411 SQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFG---FEEELKS 581
+Q L KP +V+ TP R+ +HL+ N G F +L++
Sbjct: 112 AQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 582 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 761
+L +P Q L SAT + ++ L+ L + P + Q Q++ +V E +
Sbjct: 172 ILAAVPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVK 231
Query: 762 DKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHII 938
D + S ++F NT + L + L +F+ P L+ + + R +
Sbjct: 232 DAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAAL 291
Query: 939 SQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLN 1118
++F +Y +IATD +RG+D V V+N
Sbjct: 292 AKFKSSIYRILIATDV-----------------------------ASRGLDIPTVQVVIN 322
Query: 1119 FDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEE 1247
+ P P+ YIHR GRTARA G +T V + + IEE
Sbjct: 323 HNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
>ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
scrofa].
Length = 483
Score = 140 bits (352), Expect = 2e-33
Identities = 109/403 (27%), Positives = 171/403 (42%), Gaps = 4/403 (0%)
Frame = +3
Query: 51 LLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPM 230
+ GF +GL L++ LG +PT +Q IP LEG+D L A+TGSGKTAA+ +P+
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60
Query: 231 LQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSA 410
LQ L + LVL PT++LA Q + L ++ + D
Sbjct: 61 LQKLSED-------PYGIFCLVLTPTRELAYQIAEQFRVLGK--PLGLKDCIIVGGMDMV 111
Query: 411 SQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSXXXXXXXXXXXXFSFG---FEEELKS 581
+Q L KP +V+ TP R+ +HL+ N G F +L++
Sbjct: 112 AQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 582 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 761
+L +P Q L SAT + ++ L+ L + P + Q Q++ +V E +
Sbjct: 172 ILAAVPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVK 231
Query: 762 DKFXXXXXXXXXXXIRGKS-LLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHII 938
D + S ++F NT + L + L +F+ P L+ + + R +
Sbjct: 232 DAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAAL 291
Query: 939 SQFNQGLYDCVIATDAEVLXXXXXXXXXXXXXXXXXERASDPEAGVARGIDFHHVCAVLN 1118
++F +Y +IATD +RG+D V V+N
Sbjct: 292 AKFKSSIYRILIATDV-----------------------------ASRGLDIPTVQVVIN 322
Query: 1119 FDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGQIEE 1247
+ P P+ YIHR GRTARA G +T V + + IEE
Sbjct: 323 HNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,948,108
Number of extensions: 966788
Number of successful extensions: 5479
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 5315
Number of HSP's successfully gapped: 94
Length of query: 443
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,804,438
Effective search space: 3002313358
Effective search space used: 3002313358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002521
(1329 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 494 e-137
>Sscrofa_Chr18
|| Length = 61220071
Score = 494 bits (249), Expect = e-137
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 680 ggttaccctcaagttacaggagtcccagctgccagggccagaccagctgcagcagtttca 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55611801 ggttaccctcaagttacaggagtcccagctgccagggccagaccagctgcagcagtttca 55611860
Query: 740 ggtggtctgtgagaccgaggaagacaaatttctgctgctgtacgccctgctcaagctgtc 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55611861 ggtggtctgtgagaccgaggaagacaaatttctgctgctgtacgccctgctcaagctgtc 55611920
Query: 800 tttgattcggggaaagtctctgctcttcgtcaacactctggagcggagctaccggctgcg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55611921 tttgattcggggaaagtctctgctcttcgtcaacactctggagcggagctaccggctgcg 55611980
Query: 860 cctcttcctggagcagttcagcatccccgcctgcgtgctcaacggagagctcccactgcg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55611981 cctcttcctggagcagttcagcatccccgcctgcgtgctcaacggagagctcccactgcg 55612040
Query: 920 ctcgaggtg 928
|||||||||
Sbjct: 55612041 ctcgaggtg 55612049
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 417 agagctgtgctgatggagaagcctgatatagtggtggggaccccatctcggatattaaac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610821 agagctgtgctgatggagaagcctgatatagtggtggggaccccatctcggatattaaac 55610880
Query: 477 cacttgcagcaagacaacttaaaactgcgcgactccctggagctgctggtggtggatgag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610881 cacttgcagcaagacaacttaaaactgcgcgactccctggagctgctggtggtggatgag 55610940
Query: 537 gctgatctccttttctcctttggctttgaggaagagctcaagagtcttctctg 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610941 gctgatctccttttctcctttggctttgaggaagagctcaagagtcttctctg 55610993
Score = 321 bits (162), Expect = 6e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 257 gataggccctgcggtcgagcaggctgtgagaggccttgtccttgtgccgaccaaggacct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610394 gataggccctgcggtcgagcaggctgtgagaggccttgtccttgtgccgaccaaggacct 55610453
Query: 317 ggctcggcaggcccagtccatgattcagcagctggctgcctattgtgctcgagatatccg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610454 ggctcggcaggcccagtccatgattcagcagctggctgcctattgtgctcgagatatccg 55610513
Query: 377 ggtggccaacgtctcagcggctgaagactcagcttctcagag 418
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55610514 ggtggccaacgtctcagcggctgaagactcagcttctcagag 55610555
Score = 272 bits (137), Expect = 5e-70
Identities = 161/165 (97%), Gaps = 3/165 (1%)
Strand = Plus / Plus
Query: 94 aggccgttaccgacctgggctggtcgcgacccacgctgatccaggaaaaagccattcctt 153
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 55609103 aggccgttaccgacctgggctggtcgcgacccacgctgatccaggaaaaagc-attcctt 55609161
Query: 154 tggcccttgaggggaaggacctcctggctcgggcccgcacggggtcaggg-aagaccgct 212
|||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct: 55609162 tggcccttgaggggaaggac-tcctggctcggggccgcacggggtcaggggaagaccgct 55609220
Query: 213 gcttatgccattccgatgctgcagctgctgctccacaggaaggcg 257
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55609221 gcttatgccattccgatgctgcagctgctgctccacaggaaggcg 55609265
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 924 aggtgccacatcatctcccagttcaaccaaggcctctatgactgtgtcatagcgacagat 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55612355 aggtgccacatcatctcccagttcaaccaaggcctctatgactgtgtcatagcgacagat 55612414
Query: 984 gctgaagtcctggggcctccggtcaaggggaagggcaagcagcggggcaaaggacccaag 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55612415 gctgaagtcctggggcctccggtcaaggggaagggcaagcagcggggcaaaggacccaag 55612474
Query: 1044 ggagagagg 1052
|||||||||
Sbjct: 55612475 ggagagagg 55612483
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gtcgcgcatgcgcgctgtcactacagaacagcagcatggaggatccagagctattgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55608920 gtcgcgcatgcgcgctgtcactacagaacagcagcatggaggatccagagctattgggtt 55608979
Query: 61 ttgaacacatgggcctagacccccggctcctacagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 55608980 ttgaacacatgggcctagacccccggctcctacagg 55609015
Score = 188 bits (95), Expect = 5e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1162 gcaggacggcacgtgccaacaacccaggcatagtcttgaccttcgtgctgcccacagagc 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55613269 gcaggacggcacgtgccaacaacccaggcatagtcttgaccttcgtgctgcccacagagc 55613328
Query: 1222 agtcccacctgggccagatcgaggagcttctcagcggag 1260
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 55613329 agtcccacctgggcaagatcgaggagcttctcagcggag 55613367
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 589 gccacttgccccggatttaccaggcttttctgatgtccgccacgtttaacgaggatgtac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55611111 gccacttgccccggatttaccaggcttttctgatgtccgccacgtttaacgaggatgtac 55611170
Query: 649 aggcactcaaggagctggtgctgcataacccggt 682
||||||||||||||||||||||||||||||||||
Sbjct: 55611171 aggcactcaaggagctggtgctgcataacccggt 55611204
Score = 155 bits (78), Expect = 7e-35
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 1050 agggcttctgatccggaagcaggcgtggcccgtggcatagacttccaccacgtgtgtgct 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55613068 agggcttctgatccggaagcaggcgtggcccgtggcatagacttccaccacgtgtgtgct 55613127
Query: 1110 gtgctcaactttgatctnnnnnnnnnnnnngaggcctacatacaccgcgccggcagg 1166
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 55613128 gtgctcaactttgatctccccccgacccccgaggcctacatacaccgcgccggcagg 55613184
Score = 91.7 bits (46), Expect = 9e-16
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1259 agagaacggggcgcccngcctgctttcctac-agttccgcatggnagagatcgagggctt 1317
|||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 55614369 agagaacggggcgcccgccctgcttccctaccagttccgcatggaggagatcgagggctt 55614428
Query: 1318 ccgctaccgctg 1329
||||||||||||
Sbjct: 55614429 ccgctaccgctg 55614440
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,780,325
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 10
Length of query: 1329
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1308
Effective length of database: 2,808,413,156
Effective search space: 3673404408048
Effective search space used: 3673404408048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)