Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068839.1| basigin [Bos taurus]. 450 e-126
Alignment gi|NP_001069667.1| neuroplastin [Bos taurus]. 159 5e-39
Alignment gi|XP_002696390.1| PREDICTED: embigin-like [Bos taurus]. 67 4e-11
Alignment gi|XP_002692430.1| PREDICTED: sialic acid binding Ig-like lecti... 52 1e-06
Alignment gi|XP_875911.3| PREDICTED: sialic acid binding Ig-like lectin 1... 52 1e-06
>ref|NP_001068839.1| basigin [Bos taurus].
Length = 271
Score = 450 bits (1158), Expect = e-126
Identities = 218/257 (84%), Positives = 238/257 (92%), Gaps = 2/257 (0%)
Frame = +1
Query: 124 STQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEF 303
S QGG GAGSRIWT+ID+ GSKTRLTCALNHSATEI GHRW KGGKVLKEDALPDL+TE+
Sbjct: 15 SAQGGFGAGSRIWTNIDNDGSKTRLTCALNHSATEIVGHRWVKGGKVLKEDALPDLKTEY 74
Query: 304 EVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPV 483
EVDS+DRSGQYSCIFLPEHAGRTDLEVKGPP++KAVKKSEHATEGETV+L CKSDSFPPV
Sbjct: 75 EVDSEDRSGQYSCIFLPEHAGRTDLEVKGPPSIKAVKKSEHATEGETVILVCKSDSFPPV 134
Query: 484 TEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTG 663
T WLWYK S+SGDQVI NS+Q+KFFVVSSE++TELHIP++DLKEDPGKY CNGT+ EGT
Sbjct: 135 TNWLWYKESESGDQVITNSTQSKFFVVSSESRTELHIPNVDLKEDPGKYVCNGTNLEGTS 194
Query: 664 QAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGH 843
QA I LRVRNRFAALWPFLGIVAEVLVLVT+IFIYEKRRKPDEVLDDED GSAPLKSSG+
Sbjct: 195 QAAITLRVRNRFAALWPFLGIVAEVLVLVTIIFIYEKRRKPDEVLDDEDIGSAPLKSSGN 254
Query: 844 HVN--DKGKNVRQRNAS 888
+N DK KNVRQRN+S
Sbjct: 255 PLNDKDKDKNVRQRNSS 271
>ref|NP_001069667.1| neuroplastin [Bos taurus].
Length = 278
Score = 159 bits (403), Expect = 5e-39
Identities = 88/235 (37%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L ++ + W K G L E+ ++ + SG+Y C+ FL
Sbjct: 52 LQCNLTSNSHTLTYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYQFLSAPK 111
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ ++ CKS +P EW W+K + I N+S
Sbjct: 112 ANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWTWHKKENGMLVDIVNTS 170
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+F +++ E TEL I +L + EDPG+Y CN T+S G+ V +LRVR+ A LWPFLG
Sbjct: 171 -GRFIIINRENYTELSITNLQITEDPGEYECNATNSIGSVSVVTILRVRSHLAPLWPFLG 229
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV D + P+K++ + N K KN+RQRN +
Sbjct: 230 ILAEIIILVVIIVVYEKRKRPDEVPD-----AGPMKTNSTN-NHKDKNLRQRNTN 278
>ref|XP_002696390.1| PREDICTED: embigin-like [Bos taurus].
Length = 447
Score = 67.0 bits (162), Expect = 4e-11
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 12/226 (5%)
Frame = +1
Query: 244 WEKGGKVLKEDALPD-----LRTEFEVD--SDDRSGQYSCIFLPEHAGRTDLEVKGPPNV 402
W+KG K+L+ + L + L T+ V + + G YSC F + R +K P +
Sbjct: 222 WKKGDKLLEGNYLVNATGGILYTQHRVAVINSKQMGSYSCFFGEKKQQRGTFNLK-VPEI 280
Query: 403 KAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKT 582
K G++VVL CK P+ W WY + S QV N +V+S +
Sbjct: 281 NGQNKPLITYLGDSVVLMCKCQDCLPLN-WTWYGGNGSV-QVPIGVPVNDKYVISGKHAN 338
Query: 583 ELHIPDLDLKEDP-GKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVI 759
E + L ED G Y C+ G + + L V + L F I AEV++LV I
Sbjct: 339 ETRLKITQLSEDDQGTYLCHAIFELGESEGHVKLVVLSYLVPLKVFCAIAAEVVLLVAAI 398
Query: 760 FIYE----KRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNA 885
++E K++KP + + + G + + + G R+ +
Sbjct: 399 LLFEMYTQKKKKPSDDGKEFEQGEQLKLDDSNGIENSGPRHRKNES 444
>ref|XP_002692430.1| PREDICTED: sialic acid binding Ig-like lectin 1, sialoadhesin [Bos
taurus].
Length = 1713
Score = 52.0 bits (123), Expect = 1e-06
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 10/188 (5%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G+ LTC ++ A A W + G + + L L T V D + Y+C L E
Sbjct: 720 GTGANLTCRVSREAGGPANFTWFRDGALWAQGPLETL-TLLPVARTD-AALYACRILTEA 777
Query: 361 AGRTD----LEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQV 528
+ L+V PP+ + +G T V C DS PP L++ G+ +
Sbjct: 778 GAQLSTPVVLQVLYPPDPPKLSALLDVDQGHTAVFVCTVDSRPPAQLALFH-----GEHL 832
Query: 529 IANS------SQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVR 690
+A S S+ ++ +L + DL LK D G Y C ++ G+ + +VR
Sbjct: 833 LATSPGPQLPSRGHLQAKTTANFLQLEVQDLSLK-DSGSYRCEANNALGSSNTSLFFQVR 891
Query: 691 NRFAALWP 714
+ + P
Sbjct: 892 GAWVQVSP 899
>ref|XP_875911.3| PREDICTED: sialic acid binding Ig-like lectin 1, sialoadhesin [Bos
taurus].
Length = 1713
Score = 52.0 bits (123), Expect = 1e-06
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 10/188 (5%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G+ LTC ++ A A W + G + + L L T V D + Y+C L E
Sbjct: 720 GTGANLTCRVSREAGGPANFTWFRDGALWAQGPLETL-TLLPVARTD-AALYACRILTEA 777
Query: 361 AGRTD----LEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQV 528
+ L+V PP+ + +G T V C DS PP L++ G+ +
Sbjct: 778 GAQLSTPVVLQVLYPPDPPKLSALLDVDQGHTAVFVCTVDSRPPAQLALFH-----GEHL 832
Query: 529 IANS------SQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVR 690
+A S S+ ++ +L + DL LK D G Y C ++ G+ + +VR
Sbjct: 833 LATSPGPQLPSRGHLQAKTTANFLQLEVQDLSLK-DSGSYRCEANNALGSSNTSLFFQVR 891
Query: 691 NRFAALWP 714
+ + P
Sbjct: 892 GAWVQVSP 899
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,548,977
Number of extensions: 1652028
Number of successful extensions: 8512
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8416
Number of HSP's successfully gapped: 5
Length of query: 482
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 376
Effective length of database: 14,174,046
Effective search space: 5329441296
Effective search space used: 5329441296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533964.2| PREDICTED: similar to basigin isoform 1 [Canis ... 415 e-116
Alignment gi|XP_544762.2| PREDICTED: similar to stromal cell derived fact... 169 8e-42
Alignment gi|XP_536479.2| PREDICTED: similar to embigin homolog [Canis fa... 74 5e-13
Alignment gi|XP_867891.1| PREDICTED: similar to B-cell receptor CD22 prec... 52 1e-06
Alignment gi|XP_867884.1| PREDICTED: similar to CD22 antigen isoform 3 [C... 52 1e-06
Alignment gi|XP_533695.2| PREDICTED: similar to B-cell receptor CD22 prec... 52 1e-06
Alignment gi|XP_867871.1| PREDICTED: similar to B-cell receptor CD22 prec... 52 1e-06
>ref|XP_533964.2| PREDICTED: similar to basigin isoform 1 [Canis familiaris].
Length = 268
Score = 415 bits (1067), Expect = e-116
Identities = 202/252 (80%), Positives = 226/252 (89%)
Frame = +1
Query: 133 GGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVD 312
GGSGAGS I TS++D+GSK RLTC+LN S TEI GHRW KG +VLKED PD +TE+EVD
Sbjct: 18 GGSGAGSEILTSVEDIGSKIRLTCSLNRSTTEITGHRWVKGDRVLKEDTFPDPKTEYEVD 77
Query: 313 SDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEW 492
SD+RSG+YSCIFLPE G++ +EV+G PN+KAVKKSEHATE ETVVL C+SDSFPPVT+W
Sbjct: 78 SDERSGEYSCIFLPELLGKSSIEVRGLPNIKAVKKSEHATERETVVLGCRSDSFPPVTDW 137
Query: 493 LWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAV 672
+WYK+ SGDQVI+NSSQ+KF VVSSETKTEL I +LDL+ DPGKY CNGT+SEGT QAV
Sbjct: 138 VWYKVESSGDQVISNSSQSKFLVVSSETKTELRISNLDLETDPGKYVCNGTNSEGTSQAV 197
Query: 673 IVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVN 852
IVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSG HVN
Sbjct: 198 IVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSG-HVN 256
Query: 853 DKGKNVRQRNAS 888
DKGKNVRQRNA+
Sbjct: 257 DKGKNVRQRNAN 268
>ref|XP_544762.2| PREDICTED: similar to stromal cell derived factor receptor 1
isoform b [Canis familiaris].
Length = 361
Score = 169 bits (427), Expect = 8e-42
Identities = 91/235 (38%), Positives = 138/235 (58%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W K G L E+ ++ + SG+Y C+ F+
Sbjct: 131 LQCNLTSSSHTLTYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 190
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ ++ CKS +P EW+W K + I N+S
Sbjct: 191 ANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWIWRKKENGMPVDIVNTS 249
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+++ E TEL I +L + EDPG+Y CN T+S G+ V +LRVR+ A LWPFLG
Sbjct: 250 -GRFFIINKENYTELSIVNLQITEDPGEYECNATNSIGSASVVTILRVRSHLAPLWPFLG 308
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 309 ILAEIIILVVIIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 361
>ref|XP_536479.2| PREDICTED: similar to embigin homolog [Canis familiaris].
Length = 305
Score = 73.6 bits (179), Expect = 5e-13
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 1/177 (0%)
Frame = +1
Query: 286 DLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKS 465
DL F + + G YSC E R K P V+ K G++VVL CK
Sbjct: 15 DLEKRFIITDSKQMGSYSCFLEEEKEQRGTFNFK-VPEVQGKNKPLITYVGDSVVLICKC 73
Query: 466 DSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKED-PGKYACNG 642
+ W WY + S QV + N + + E + L ED G Y C
Sbjct: 74 QHCSSLN-WTWYSNNGSA-QVPIDVQMNDKYEIKGTNANETRLKITHLSEDNKGSYWCRA 131
Query: 643 TSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDT 813
G + + L V + L PFLGI AEV+++V VI +YE + + L D D+
Sbjct: 132 AFPLGESEQRVELVVLSYLVPLKPFLGIAAEVVIVVAVILLYETHTQKKKKLTDNDS 188
>ref|XP_867891.1| PREDICTED: similar to B-cell receptor CD22 precursor (Leu-14)
(B-lymphocyte cell adhesion molecule) (BL-CAM)
(Siglec-2) isoform 4 [Canis familiaris].
Length = 845
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C + S W+K G LKE F+ S + +G Y+C+ +
Sbjct: 518 GHRVLLGCNFSSSRPRDVRFFWKKNGIFLKEGR----ELSFDSISPEDAGNYNCL-VNNS 572
Query: 361 AGRTDLEVK------GPPNVK-AVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T E K P ++ A+ + EG+ VL C+SD+ PP+ ++ W+ D
Sbjct: 573 VGQTTSEAKMLRVLYAPRMLRVAISPKDEVIEGKKAVLTCESDANPPILQYAWF---DWN 629
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + + Q L + + ++ G Y C T+ GTGQ+
Sbjct: 630 NQNLRHYDQ------------MLRLDPVKVQHS-GAYRCQATNRLGTGQS 666
>ref|XP_867884.1| PREDICTED: similar to CD22 antigen isoform 3 [Canis familiaris].
Length = 778
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C + S W+K G LKE F+ S + +G Y+C+ +
Sbjct: 518 GHRVLLGCNFSSSRPRDVRFFWKKNGIFLKEGR----ELSFDSISPEDAGNYNCL-VNNS 572
Query: 361 AGRTDLEVK------GPPNVK-AVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T E K P ++ A+ + EG+ VL C+SD+ PP+ ++ W+ D
Sbjct: 573 VGQTTSEAKMLRVLYAPRMLRVAISPKDEVIEGKKAVLTCESDANPPILQYAWF---DWN 629
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + + Q L + + ++ G Y C T+ GTGQ+
Sbjct: 630 NQNLRHYDQ------------MLRLDPVKVQHS-GAYRCQATNRLGTGQS 666
>ref|XP_533695.2| PREDICTED: similar to B-cell receptor CD22 precursor (Leu-14)
(B-lymphocyte cell adhesion molecule) (BL-CAM)
(Siglec-2) isoform 1 [Canis familiaris].
Length = 853
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C + S W+K G LKE F+ S + +G Y+C+ +
Sbjct: 526 GHRVLLGCNFSSSRPRDVRFFWKKNGIFLKEGR----ELSFDSISPEDAGNYNCL-VNNS 580
Query: 361 AGRTDLEVK------GPPNVK-AVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T E K P ++ A+ + EG+ VL C+SD+ PP+ ++ W+ D
Sbjct: 581 VGQTTSEAKMLRVLYAPRMLRVAISPKDEVIEGKKAVLTCESDANPPILQYAWF---DWN 637
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + + Q L + + ++ G Y C T+ GTGQ+
Sbjct: 638 NQNLRHYDQ------------MLRLDPVKVQHS-GAYRCQATNRLGTGQS 674
>ref|XP_867871.1| PREDICTED: similar to B-cell receptor CD22 precursor (Leu-14)
(B-lymphocyte cell adhesion molecule) (BL-CAM)
(Siglec-2) isoform 2 [Canis familiaris].
Length = 668
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C + S W+K G LKE F+ S + +G Y+C+ +
Sbjct: 341 GHRVLLGCNFSSSRPRDVRFFWKKNGIFLKEGR----ELSFDSISPEDAGNYNCL-VNNS 395
Query: 361 AGRTDLEVK------GPPNVK-AVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T E K P ++ A+ + EG+ VL C+SD+ PP+ ++ W+ D
Sbjct: 396 VGQTTSEAKMLRVLYAPRMLRVAISPKDEVIEGKKAVLTCESDANPPILQYAWF---DWN 452
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + + Q L + + ++ G Y C T+ GTGQ+
Sbjct: 453 NQNLRHYDQ------------MLRLDPVKVQHS-GAYRCQATNRLGTGQS 489
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,856,094
Number of extensions: 1696962
Number of successful extensions: 8460
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8320
Number of HSP's successfully gapped: 7
Length of query: 482
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 375
Effective length of database: 15,307,552
Effective search space: 5740332000
Effective search space used: 5740332000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_940991.1| basigin isoform 2 precursor [Homo sapiens]. 363 e-100
Alignment gi|NP_001719.2| basigin isoform 1 precursor [Homo sapiens]. 353 2e-97
Alignment gi|NP_940993.1| basigin isoform 4 [Homo sapiens]. 285 6e-77
Alignment gi|NP_059429.1| neuroplastin isoform a precursor [Homo sapiens]. 168 1e-41
Alignment gi|NP_036560.1| neuroplastin isoform b precursor [Homo sapiens]. 168 1e-41
Alignment gi|NP_001154836.1| neuroplastin isoform d precursor [Homo sapie... 163 3e-40
Alignment gi|NP_001154835.1| neuroplastin isoform c precursor [Homo sapie... 163 3e-40
Alignment gi|NP_940851.1| embigin precursor [Homo sapiens]. 71 2e-12
Alignment gi|NP_001172030.1| B-cell receptor CD22 isoform 4 precursor [Ho... 56 1e-07
Alignment gi|NP_001172029.1| B-cell receptor CD22 isoform 3 precursor [Ho... 56 1e-07
>ref|NP_940991.1| basigin isoform 2 precursor [Homo sapiens].
Length = 269
Score = 363 bits (931), Expect = e-100
Identities = 167/254 (65%), Positives = 211/254 (83%)
Frame = +1
Query: 127 TQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFE 306
T G SGA ++T+++D+GSK LTC+LN SATE+ GHRW KGG VLKEDALP +TEF+
Sbjct: 16 THGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFK 75
Query: 307 VDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVT 486
VDSDD+ G+YSC+FLPE G ++++ GPP VKAVK SEH EGET +L CKS+S PPVT
Sbjct: 76 VDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 135
Query: 487 EWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQ 666
+W WYK++DS D+ + N S+++FFV SS+ ++ELHI +L+++ DPG+Y CNGTSS+G+ Q
Sbjct: 136 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 195
Query: 667 AVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHH 846
A+I LRVR+ AALWPFLGIVAEVLVLVT+IFIYEKRRKP++VLDD+D GSAPLKSSG H
Sbjct: 196 AIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQH 255
Query: 847 VNDKGKNVRQRNAS 888
NDKGKNVRQRN+S
Sbjct: 256 QNDKGKNVRQRNSS 269
>ref|NP_001719.2| basigin isoform 1 precursor [Homo sapiens].
Length = 385
Score = 353 bits (907), Expect = 2e-97
Identities = 162/244 (66%), Positives = 206/244 (84%)
Frame = +1
Query: 157 IWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQY 336
++T+++D+GSK LTC+LN SATE+ GHRW KGG VLKEDALP +TEF+VDSDD+ G+Y
Sbjct: 142 VFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEY 201
Query: 337 SCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDS 516
SC+FLPE G ++++ GPP VKAVK SEH EGET +L CKS+S PPVT+W WYK++DS
Sbjct: 202 SCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDS 261
Query: 517 GDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNR 696
D+ + N S+++FFV SS+ ++ELHI +L+++ DPG+Y CNGTSS+G+ QA+I LRVR+
Sbjct: 262 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 321
Query: 697 FAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQ 876
AALWPFLGIVAEVLVLVT+IFIYEKRRKP++VLDD+D GSAPLKSSG H NDKGKNVRQ
Sbjct: 322 LAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQ 381
Query: 877 RNAS 888
RN+S
Sbjct: 382 RNSS 385
>ref|NP_940993.1| basigin isoform 4 [Homo sapiens].
Length = 205
Score = 285 bits (730), Expect = 6e-77
Identities = 134/207 (64%), Positives = 169/207 (81%)
Frame = +1
Query: 268 KEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETV 447
+ DA P R VDSDD+ G+YSC+FLPE G ++++ GPP VKAVK SEH EGET
Sbjct: 3 QSDASPQER----VDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA 58
Query: 448 VLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGK 627
+L CKS+S PPVT+W WYK++DS D+ + N S+++FFV SS+ ++ELHI +L+++ DPG+
Sbjct: 59 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 118
Query: 628 YACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDE 807
Y CNGTSS+G+ QA+I LRVR+ AALWPFLGIVAEVLVLVT+IFIYEKRRKP++VLDD+
Sbjct: 119 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD 178
Query: 808 DTGSAPLKSSGHHVNDKGKNVRQRNAS 888
D GSAPLKSSG H NDKGKNVRQRN+S
Sbjct: 179 DAGSAPLKSSGQHQNDKGKNVRQRNSS 205
>ref|NP_059429.1| neuroplastin isoform a precursor [Homo sapiens].
Length = 282
Score = 168 bits (426), Expect = 1e-41
Identities = 90/235 (38%), Positives = 138/235 (58%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W K G L E+ ++ + SG+Y C+ F+
Sbjct: 52 LQCNLTSSSHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 111
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ + CKS +P +W+W K + I N+S
Sbjct: 112 ANATIEVKAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS 170
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+++ E TEL+I +L + EDPG+Y CN T++ G+ V VLRVR+ A LWPFLG
Sbjct: 171 -GRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLG 229
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 230 ILAEIIILVVIIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 282
>ref|NP_036560.1| neuroplastin isoform b precursor [Homo sapiens].
Length = 398
Score = 168 bits (426), Expect = 1e-41
Identities = 90/235 (38%), Positives = 138/235 (58%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W K G L E+ ++ + SG+Y C+ F+
Sbjct: 168 LQCNLTSSSHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 227
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ + CKS +P +W+W K + I N+S
Sbjct: 228 ANATIEVKAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS 286
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+++ E TEL+I +L + EDPG+Y CN T++ G+ V VLRVR+ A LWPFLG
Sbjct: 287 -GRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLG 345
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 346 ILAEIIILVVIIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 398
>ref|NP_001154836.1| neuroplastin isoform d precursor [Homo sapiens].
Length = 278
Score = 163 bits (413), Expect = 3e-40
Identities = 88/235 (37%), Positives = 136/235 (57%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W K G L E+ ++ + SG+Y C+ F+
Sbjct: 52 LQCNLTSSSHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 111
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ + CKS +P +W+W K + I N+S
Sbjct: 112 ANATIEVKAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS 170
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+++ E TEL+I +L + EDPG+Y CN T++ G+ V VLRVR+ A LWPFLG
Sbjct: 171 -GRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLG 229
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV D + P+K++ + N K KN+RQRN +
Sbjct: 230 ILAEIIILVVIIVVYEKRKRPDEVPD-----AGPMKTNSTN-NHKDKNLRQRNTN 278
>ref|NP_001154835.1| neuroplastin isoform c precursor [Homo sapiens].
Length = 394
Score = 163 bits (413), Expect = 3e-40
Identities = 88/235 (37%), Positives = 136/235 (57%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W K G L E+ ++ + SG+Y C+ F+
Sbjct: 168 LQCNLTSSSHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 227
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ + CKS +P +W+W K + I N+S
Sbjct: 228 ANATIEVKAAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS 286
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+++ E TEL+I +L + EDPG+Y CN T++ G+ V VLRVR+ A LWPFLG
Sbjct: 287 -GRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLG 345
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV D + P+K++ + N K KN+RQRN +
Sbjct: 346 ILAEIIILVVIIVVYEKRKRPDEVPD-----AGPMKTNSTN-NHKDKNLRQRNTN 394
>ref|NP_940851.1| embigin precursor [Homo sapiens].
Length = 327
Score = 71.2 bits (173), Expect = 2e-12
Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 9/217 (4%)
Frame = +1
Query: 184 SKTRLTCALNHSATEIAGH-RWEKGGKVLKEDALPDL-------RTEFEVDSDDRSGQYS 339
S LTC S A + W+K G+ L+ + L + F + + + G YS
Sbjct: 82 SNVNLTCQFTTSGDLNAVNVTWKKDGEQLENNYLVSATGSTLYTQYRFTIINSKQMGSYS 141
Query: 340 CIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
C F E R K P + K + G++ VL CK + P+ W WY S+
Sbjct: 142 CFFREEKEQRGTFNFK-VPELHGKNKPLISYVGDSTVLTCKCQNCFPLN-WTWYS-SNGS 198
Query: 520 DQVIANSSQNKFFVVSS-ETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNR 696
+V NK+ + + +T+L I L L+ED Y C G + I L V +
Sbjct: 199 VKVPVGVQMNKYVINGTYANETKLKITQL-LEEDGESYWCRALFQLGESEEHIELVVLSY 257
Query: 697 FAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDE 807
L PFL IVAEV++LV I + EK + + DE
Sbjct: 258 LVPLKPFLVIVAEVILLVATILLCEKYTQKKKKHSDE 294
>ref|NP_001172030.1| B-cell receptor CD22 isoform 4 precursor [Homo sapiens].
Length = 670
Score = 55.8 bits (133), Expect = 1e-07
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G+ L C + S + WEK G++L +++ + F+ S + +G YSC ++
Sbjct: 345 GNSVSLQCDFSSSHPKEVQFFWEKNGRLLGKES----QLNFDSISPEDAGSYSC-WVNNS 399
Query: 361 AGRT-----DLEVKGPPNVKAVKKS--EHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T LEV P V S + EG++ L C+SD+ PPV+ + W+ D
Sbjct: 400 IGQTASKAWTLEVLYAPRRLRVSMSPGDQVMEGKSATLTCESDANPPVSHYTWF---DWN 456
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + SQ +L + + ++ G Y C GT+S G G++
Sbjct: 457 NQSLPYHSQ------------KLRLEPVKVQHS-GAYWCQGTNSVGKGRS 493
>ref|NP_001172029.1| B-cell receptor CD22 isoform 3 precursor [Homo sapiens].
Length = 751
Score = 55.8 bits (133), Expect = 1e-07
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G+ L C + S + WEK G++L +++ + F+ S + +G YSC ++
Sbjct: 522 GNSVSLQCDFSSSHPKEVQFFWEKNGRLLGKES----QLNFDSISPEDAGSYSC-WVNNS 576
Query: 361 AGRT-----DLEVKGPPNVKAVKKS--EHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G+T LEV P V S + EG++ L C+SD+ PPV+ + W+ D
Sbjct: 577 IGQTASKAWTLEVLYAPRRLRVSMSPGDQVMEGKSATLTCESDANPPVSHYTWF---DWN 633
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
+Q + SQ +L + + ++ G Y C GT+S G G++
Sbjct: 634 NQSLPYHSQ------------KLRLEPVKVQHS-GAYWCQGTNSVGKGRS 670
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,628,202
Number of extensions: 1658691
Number of successful extensions: 8396
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 8289
Number of HSP's successfully gapped: 12
Length of query: 482
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 376
Effective length of database: 14,802,980
Effective search space: 5565920480
Effective search space used: 5565920480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070652.1| basigin isoform 2 [Mus musculus]. 328 8e-90
Alignment gi|NP_033898.1| basigin isoform 1 [Mus musculus]. 322 5e-88
Alignment gi|NP_033171.2| neuroplastin precursor [Mus musculus]. 167 2e-41
Alignment gi|NP_034460.3| embigin precursor [Mus musculus]. 70 5e-12
Alignment gi|NP_033975.3| B-cell receptor CD22 [Mus musculus]. 57 3e-08
Alignment gi|NP_001036782.1| B-cell receptor CD22 [Mus musculus]. 57 3e-08
>ref|NP_001070652.1| basigin isoform 2 [Mus musculus].
Length = 273
Score = 328 bits (840), Expect = 8e-90
Identities = 157/259 (60%), Positives = 202/259 (77%), Gaps = 4/259 (1%)
Frame = +1
Query: 124 STQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEF 303
S QG A I TS+ +V SKT+LTC+LN S +I GHRW +GGKVL+ED LPDL T++
Sbjct: 15 SGQGACAAAGTIQTSVQEVNSKTQLTCSLNSSGVDIVGHRWMRGGKVLQEDTLPDLHTKY 74
Query: 304 EVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSD-SFPP 480
VD+DDRSG+YSCIFLPE GR+++ V+GPP +K KKSEH++EGE L CKSD S+PP
Sbjct: 75 IVDADDRSGEYSCIFLPEPVGRSEINVEGPPRIKVGKKSEHSSEGELAKLVCKSDASYPP 134
Query: 481 VTEWLWYKMSDSGDQ-VIANSSQ--NKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSS 651
+T+W W+K SD+G++ I NS++ K+ VVS+ K++L I +LD+ DPG Y CN T++
Sbjct: 135 ITDWFWFKTSDTGEEEAITNSTEANGKYVVVSTPEKSQLTISNLDVNVDPGTYVCNATNA 194
Query: 652 EGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLK 831
+GT + I LRVR+R AALWPFLGIVAEVLVLVT+IFIYEKRRKPD+ LD++D G+APLK
Sbjct: 195 QGTTRETISLRVRSRMAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLDEDDPGAAPLK 254
Query: 832 SSGHHVNDKGKNVRQRNAS 888
SG H+NDK KNVRQRNA+
Sbjct: 255 GSGTHMNDKDKNVRQRNAT 273
>ref|NP_033898.1| basigin isoform 1 [Mus musculus].
Length = 389
Score = 322 bits (825), Expect = 5e-88
Identities = 153/248 (61%), Positives = 198/248 (79%), Gaps = 4/248 (1%)
Frame = +1
Query: 157 IWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQY 336
I TS+ +V SKT+LTC+LN S +I GHRW +GGKVL+ED LPDL T++ VD+DDRSG+Y
Sbjct: 142 IQTSVQEVNSKTQLTCSLNSSGVDIVGHRWMRGGKVLQEDTLPDLHTKYIVDADDRSGEY 201
Query: 337 SCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSD-SFPPVTEWLWYKMSD 513
SCIFLPE GR+++ V+GPP +K KKSEH++EGE L CKSD S+PP+T+W W+K SD
Sbjct: 202 SCIFLPEPVGRSEINVEGPPRIKVGKKSEHSSEGELAKLVCKSDASYPPITDWFWFKTSD 261
Query: 514 SGDQ-VIANSSQ--NKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLR 684
+G++ I NS++ K+ VVS+ K++L I +LD+ DPG Y CN T+++GT + I LR
Sbjct: 262 TGEEEAITNSTEANGKYVVVSTPEKSQLTISNLDVNVDPGTYVCNATNAQGTTRETISLR 321
Query: 685 VRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGK 864
VR+R AALWPFLGIVAEVLVLVT+IFIYEKRRKPD+ LD++D G+APLK SG H+NDK K
Sbjct: 322 VRSRMAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLDEDDPGAAPLKGSGTHMNDKDK 381
Query: 865 NVRQRNAS 888
NVRQRNA+
Sbjct: 382 NVRQRNAT 389
>ref|NP_033171.2| neuroplastin precursor [Mus musculus].
Length = 281
Score = 167 bits (422), Expect = 2e-41
Identities = 91/235 (38%), Positives = 138/235 (58%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCI--FLPEHA 363
L C L S+ + W + G L E+ ++ + SG+Y C+ F+
Sbjct: 51 LQCNLTSSSHTLMYSYWTRNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK 110
Query: 364 GRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+EVK P++ K+SE+ EG+ ++ CKS +P EW+W K + + I+NSS
Sbjct: 111 ANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWIWRKKENGVFEEISNSS 169
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+FF+ + E TEL I +L + EDPG+Y CN T+S G+ VLRVR+ A LWPFLG
Sbjct: 170 -GRFFITNKENYTELSIVNLQITEDPGEYECNATNSIGSASVSTVLRVRSHLAPLWPFLG 228
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 229 ILAEIIILVVIIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 281
>ref|NP_034460.3| embigin precursor [Mus musculus].
Length = 330
Score = 69.7 bits (169), Expect = 5e-12
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Frame = +1
Query: 301 FEVDSDDRSGQYSCIF-LPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFP 477
F V + + G+YSC+F E G ++ V P KKS A G++ VL C
Sbjct: 132 FIVFNSKQLGKYSCVFGEKELRGTFNIHV---PKAHGKKKSLIAYVGDSTVLKCVCQDCL 188
Query: 478 PVTEWLWYKMSDSGDQVIANSSQNKFFVVSSET-KTELHIPDLDLKEDPGKYACNGTSSE 654
P+ W WY +++ I S K+ + S +T L I L L+ED G Y C T
Sbjct: 189 PLN-WTWYMGNETAQVPIDAHSNEKYIINGSHANETRLKIKHL-LEEDGGSYWCRATFQL 246
Query: 655 GTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVI-----FIYEKRRKPD 789
G + L V + L PFL I+AEV++LV +I + ++K+ PD
Sbjct: 247 GESEEQNELVVLSFLVPLKPFLAILAEVILLVAIILLCEVYTHKKKNDPD 296
>ref|NP_033975.3| B-cell receptor CD22 [Mus musculus].
Length = 868
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C S W+K G +++E F S + SG Y+C+ +
Sbjct: 543 GQRVLLQCDFAESNPAEVRFFWKKNGSLVQEGRY----LSFGSVSPEDSGNYNCM-VNNS 597
Query: 361 AGRT-----DLEVKGPPNVKAVKKS--EHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G T +L+V P V S +H EG+ L+C+SD+ PP++++ W+ DS
Sbjct: 598 IGETLSQAWNLQVLYAPRRLRVSISPGDHVMEGKKATLSCESDANPPISQYTWF---DSS 654
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
Q + +S Q +L + L++ + G Y C GT+ GTG++
Sbjct: 655 GQDLHSSGQ------------KLRLEPLEV-QHTGSYRCKGTNGIGTGES 691
>ref|NP_001036782.1| B-cell receptor CD22 [Mus musculus].
Length = 868
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Frame = +1
Query: 181 GSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEH 360
G + L C S W+K G +++E F S + SG Y+C+ +
Sbjct: 543 GQRVLLQCDFAESNPAEVRFFWKKNGSLVQEGRY----LSFGSVSPEDSGNYNCM-VNNS 597
Query: 361 AGRT-----DLEVKGPPNVKAVKKS--EHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
G T +L+V P V S +H EG+ L+C+SD+ PP++++ W+ DS
Sbjct: 598 IGETLSQAWNLQVLYAPRRLRVSISPGDHVMEGKKATLSCESDANPPISQYTWF---DSS 654
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQA 669
Q + +S Q +L + L++ + G Y C GT+ GTG++
Sbjct: 655 GQDLHSSGQ------------KLRLEPLEV-QHTGSYRCKGTNGIGTGES 691
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,420,553
Number of extensions: 1379027
Number of successful extensions: 6612
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6516
Number of HSP's successfully gapped: 6
Length of query: 482
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 377
Effective length of database: 12,463,779
Effective search space: 4698844683
Effective search space used: 4698844683
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116558.1| basigin [Sus scrofa]. 520 e-148
Alignment gi|XP_003360778.1| PREDICTED: neuroplastin-like, partial [Sus s... 162 6e-40
Alignment gi|XP_001928700.3| PREDICTED: neuroplastin, partial [Sus scrofa]. 144 9e-35
Alignment gi|XP_003359820.1| PREDICTED: LOW QUALITY PROTEIN: embigin-like... 72 6e-13
>ref|NP_001116558.1| basigin [Sus scrofa].
Length = 269
Score = 520 bits (1340), Expect = e-148
Identities = 258/269 (95%), Positives = 258/269 (95%)
Frame = +1
Query: 82 MADXXXXXXXXXXXSTQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGK 261
MAD STQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGK
Sbjct: 1 MADVRLVVLGLVLLSTQGGSGAGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGK 60
Query: 262 VLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGE 441
VLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGE
Sbjct: 61 VLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGE 120
Query: 442 TVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDP 621
TVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDP
Sbjct: 121 TVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDP 180
Query: 622 GKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLD 801
GKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLD
Sbjct: 181 GKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLD 240
Query: 802 DEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
DEDTGSAPLKSSGHHVNDKGKNVRQRNAS
Sbjct: 241 DEDTGSAPLKSSGHHVNDKGKNVRQRNAS 269
>ref|XP_003360778.1| PREDICTED: neuroplastin-like, partial [Sus scrofa].
Length = 482
Score = 162 bits (409), Expect = 6e-40
Identities = 89/235 (37%), Positives = 139/235 (59%), Gaps = 4/235 (1%)
Frame = +1
Query: 196 LTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSD--DRSGQYSCIFLPEHAGR 369
L C L ++ + W K G L E+ ++ + SG+Y C++ A +
Sbjct: 252 LQCNLTSNSHTLTYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFASAPK 311
Query: 370 TD--LEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSS 543
+ +EVK P++ K+SE+ EG+ ++ CKS +P EW+W K + I N+S
Sbjct: 312 ANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWIWRKKENGMLVDIVNTS 370
Query: 544 QNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLG 723
+F +++ E TEL I +L + EDPG+Y CN T+S G+ V +LRVR+ A LWPFLG
Sbjct: 371 -GRFIIINRENYTELSIMNLQITEDPGEYECNATNSIGSVSVVTILRVRSHLAPLWPFLG 429
Query: 724 IVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
I+AE+++LV +I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 430 ILAEIIILVVIIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 482
>ref|XP_001928700.3| PREDICTED: neuroplastin, partial [Sus scrofa].
Length = 168
Score = 144 bits (364), Expect = 9e-35
Identities = 73/165 (44%), Positives = 110/165 (66%)
Frame = +1
Query: 394 PNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSE 573
P++ K+SE+ EG+ ++ CKS +P EW+W K + I N+S +F +++ E
Sbjct: 8 PDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWIWRKKENGMLVDIVNTS-GRFIIINRE 65
Query: 574 TKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVT 753
TEL I +L + EDPG+Y CN T+S G+ V +LRVR+ A LWPFLGI+AE+++LV
Sbjct: 66 NYTELSIMNLQITEDPGEYECNATNSIGSVSVVTILRVRSHLAPLWPFLGILAEIIILVV 125
Query: 754 VIFIYEKRRKPDEVLDDEDTGSAPLKSSGHHVNDKGKNVRQRNAS 888
+I +YEKR++PDEV DD D + P+K++ + N K KN+RQRN +
Sbjct: 126 IIVVYEKRKRPDEVPDD-DEPAGPMKTNSTN-NHKDKNLRQRNTN 168
>ref|XP_003359820.1| PREDICTED: LOW QUALITY PROTEIN: embigin-like [Sus scrofa].
Length = 419
Score = 72.4 bits (176), Expect = 6e-13
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 22/246 (8%)
Frame = +1
Query: 184 SKTRLTCALNHSATEIAGH-RWEKGGKVLKEDALPDLRTE-------FEVDSDDRSGQYS 339
S LTC S + + W+K ++LK + L ++ F + + + G YS
Sbjct: 173 SNIELTCXFTTSRDLNSENVTWKKDDELLKNNYLINVTGRLLYTQYMFTIVNSKQMGSYS 232
Query: 340 CIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSG 519
C F + R K P + K G++VVL CK P+ W WY S+
Sbjct: 233 CFFEEKKEQRGTFNFK-VPQLNGKNKPLITYVGDSVVLMCKCKDCLPLN-WTWYS-SNGS 289
Query: 520 DQVIANSSQNKFFVVSSETKTELHIPDLDL-KEDPGKYACNGTSSEGTGQAVIVLRVRNR 696
QV N +V++ + E + + L +ED G Y C+ G + I L V +
Sbjct: 290 VQVPVGVQTNDKYVINGKNANETRLKIMQLSEEDQGSYWCHAIFQLGESEEHIELVVLSY 349
Query: 697 FAALWPFLGIVAEVLVLVTVIFIYE----KRRKPD---------EVLDDEDTGSAPLKSS 837
L FL I AEV++LV +I + E KR+KP E L +D+ ++
Sbjct: 350 LVPLKAFLAIAAEVVLLVAIILLCEMYTQKRKKPSDDGKEFEQIEQLKSDDSNGIENNAT 409
Query: 838 GHHVND 855
H N+
Sbjct: 410 RHRKNE 415
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,179,297
Number of extensions: 1069555
Number of successful extensions: 5432
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5358
Number of HSP's successfully gapped: 4
Length of query: 482
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 379
Effective length of database: 8,779,541
Effective search space: 3327446039
Effective search space used: 3327446039
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002526
(1446 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896290.2| Sus scrofa unplaced genomic scaffold ChrUScaf4174 567 e-159
>gb|GL896290.2| Sus scrofa unplaced genomic scaffold ChrUScaf4174
Length = 57879
Score = 567 bits (286), Expect = e-159
Identities = 295/298 (98%)
Strand = Plus / Minus
Query: 893 aggtgctgagcatgagtctgcatgggcacgccagcctgtctggaggagcctggtgttccc 952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 43493 aggtgctgagcatgagtctgcatgggcacgccagcctgtctggaggagcctggtgttcac 43434
Query: 953 ctggtgtttgcacaaccccacgttccttcctcttaaggaaacccgcccagcaaaagcaaa 1012
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 43433 ctggtgtttgcacaaccccacgttccttcctcttaaggaaacccgcccagccacagcaaa 43374
Query: 1013 ccaccttgtgtgttcaaatcacacatcttctcttctttttcacaaaacgaagctagggtt 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43373 ccaccttgtgtgttcaaatcacacatcttctcttctttttcacaaaacgaagctagggtt 43314
Query: 1073 ttctatgtgtagaatcctgtccctcgggggttttgcttccctttttaaacatttcacaag 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43313 ttctatgtgtagaatcctgtccctcgggggttttgcttccctttttaaacatttcacaag 43254
Query: 1133 cacctcagggcagttgtgaggctcctgtgatgttcctgctgtgccctggcccagcccc 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43253 cacctcagggcagttgtgaggctcctgtgatgttcctgctgtgccctggcccagcccc 43196
Score = 559 bits (282), Expect = e-156
Identities = 285/286 (99%)
Strand = Plus / Minus
Query: 522 ccaggtcatcgccaacagctcccagaacaagttcttcgtggtctcctcggagaccaagac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44511 ccaggtcatcgccaacagctcccagaacaagttcttcgtggtctcctcggagaccaagac 44452
Query: 582 agagctgcacatcccagacctggacctgaaggaggacccgggcaagtacgcgtgcaatgg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44451 agagctgcacatcccagacctggacctgaaggaggacccgggcaagtacgcgtgcaatgg 44392
Query: 642 caccagctctgagggcaccggccaggcggtcatcgtgctgcgtgtgcgcaaccgctttgc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44391 caccagctctgagggcaccggccaggcggtcatcgtgctgcgtgtgcgcaaccgctttgc 44332
Query: 702 cgccctctggcccttcctgggcatcgtggctgaggtgcttgtgctggtcaccgtcatctt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44331 cgccctctggcccttcctgggcatcgtggctgaggtgcttgtgctggtcaccgtcatctt 44272
Query: 762 catctatgagaagcggcggaagccggatgaggtcctggatgatgag 807
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 44271 catctatgagaagcggcggaagccggatgaggtcctggatggtgag 44226
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 146 cagggagcaggatctggacctcgatagatgatgttggctccaaaacacgcctcacctgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45811 cagggagcaggatctggacctcgatagatgatgttggctccaaaacacgcctcacctgtg 45752
Query: 206 ccctgaatcacagcgccactgagatcgcgggccaccgctgggagaaggggggcaaggtgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45751 ccctgaatcacagcgccactgagatcgcgggccaccgctgggagaaggggggcaaggtgc 45692
Query: 266 taaaggaggatgcgctgcctgacctgaggacagagtttgag 306
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 45691 taaaggaggatgcgctgcctgacctgaggacagagtttgag 45651
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 388 gggccacctaatgtcaaggctgtgaagaagtcagagcacgctaccgagggggagaccgtg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44789 gggccacctaatgtcaaggctgtgaagaagtcagagcacgctaccgagggggagaccgtg 44730
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 474 cccgccagtcaccgagtggctatggtacaagatgagtgactctggggaccaggt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44629 cccgccagtcaccgagtggctatggtacaagatgagtgactctggggaccaggt 44576
Score = 105 bits (53), Expect = 7e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 337 tcctgcatcttcctgccagagcacgcgggccgcacagacctggaagtgaaggg 389
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44986 tcctgcatcttcctgccagagcacgcgggccgcacagacctggaagtgaaggg 44934
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1417 ggtcgtgtgcagtgccaatcctcctgctgt 1446
||||||||||||||||||||||||||||||
Sbjct: 43194 ggtcgtgtgcagtgccaatcctcctgctgt 43165
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,331,519
Number of extensions: 443
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 7
Length of query: 1446
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1425
Effective length of database: 2,808,413,156
Effective search space: 4001988747300
Effective search space used: 4001988747300
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)