Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus]. 382 e-106
Alignment gi|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus]. 330 1e-90
Alignment gi|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus]. 114 2e-25
Alignment gi|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus]. 107 2e-23
Alignment gi|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus]. 106 3e-23
Alignment gi|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus]. 104 2e-22
Alignment gi|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus]. 102 5e-22
Alignment gi|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin as... 82 1e-15
Alignment gi|NP_001193851.1| coatomer subunit zeta-2 isoform 2 [Bos tauru... 51 2e-06
Alignment gi|NP_001193850.1| coatomer subunit zeta-2 isoform 1 [Bos tauru... 51 2e-06
>ref|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus].
Length = 193
Score = 382 bits (981), Expect = e-106
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 180
Query: 708 DISIKVPNLPS 740
DISIKVPNLPS
Sbjct: 181 DISIKVPNLPS 191
>ref|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus].
Length = 193
Score = 330 bits (846), Expect = 1e-90
Identities = 160/189 (84%), Positives = 177/189 (93%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+AIL+FNNHGKPRL +FYQ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
E+VMGGMVLETNMNEIV QI+AQN+LEKSE GL+ APARAVSAVKN+NLPE+PRNINIG
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEMPRNINIG 180
Query: 708 DISIKVPNL 734
D++IKVPNL
Sbjct: 181 DLNIKVPNL 189
>ref|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus].
Length = 142
Score = 114 bits (284), Expect = 2e-25
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>ref|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus].
Length = 160
Score = 107 bits (267), Expect = 2e-23
Identities = 55/145 (37%), Positives = 90/145 (62%)
Frame = +3
Query: 180 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 359
+L+F+ GK RL K+Y P S+ +++I RE V R +C+FLE D K++
Sbjct: 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RDLKIV 57
Query: 360 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 539
Y+ YA+LYF ++ ++EL L++I +VE LDK F +VCELD+IF+ +K + IL E +
Sbjct: 58 YKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 117
Query: 540 MGGMVLETNMNEIVTQIDAQNKLEK 614
+GG V ET+ ++ I+ + L++
Sbjct: 118 LGGEVQETSKKNVLKAIEQADLLQE 142
>ref|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus].
Length = 157
Score = 106 bits (265), Expect = 3e-23
Identities = 54/150 (36%), Positives = 94/150 (62%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 350
++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RDL 54
Query: 351 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 530
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 55 KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 114
Query: 531 EMVMGGMVLETNMNEIVTQIDAQNKLEKSE 620
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 115 EFLMGGDVQDTSKKSVLKAIEQADLLQEED 144
>ref|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus].
Length = 154
Score = 104 bits (259), Expect = 2e-22
Identities = 54/150 (36%), Positives = 91/150 (60%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI IL+F+ GK RL K+Y + +++I RE ++ R + +F++ L
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKEL----- 55
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KL+Y+ YA+LYF V++ ++EL L+++ +VE LDK F NVCELD+IF+ +K + IL
Sbjct: 56 -KLVYKRYASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
E ++GG + ET+ V I+ + L+++
Sbjct: 115 DEFIIGGEIQETSKKSAVKAIEDSDMLQET 144
>ref|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus].
Length = 144
Score = 102 bits (255), Expect = 5e-22
Identities = 58/150 (38%), Positives = 84/150 (56%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEY------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKMSDS 144
>ref|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin associated complex)
family member (aps-2)-like [Bos taurus].
Length = 109
Score = 81.6 bits (200), Expect = 1e-15
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +3
Query: 351 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 530
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 23 KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 82
Query: 531 EMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 83 EMFLAGEIRETSQTKVLKQLLMLQSLE 109
>ref|NP_001193851.1| coatomer subunit zeta-2 isoform 2 [Bos taurus].
Length = 197
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRE--TFHLVSKRDENVCNFLEGGLLIGGS 344
IKA+ I +N G L+K+Y ++Q+ E F+ S+ D + F GG+ I
Sbjct: 33 IKAVFILDNDGHRLLAKYYDDTFPSMKEQMAFEKNVFNKTSRTDSEIAFF--GGMTI--- 87
Query: 345 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF-ENVCELDLIFHVDKVHN 521
+Y+ L+ S E+EL ++ ++ E+L+ +NV + L+ ++D
Sbjct: 88 ----VYKSSIDLFLYVVGSSYENELMLMSVLTCLFESLNHVLRKNVEKRWLLENMDGAFL 143
Query: 522 ILAEMVMGGMVLETNMNEIVTQID 593
++ E+V GG++LE++ +++ +++
Sbjct: 144 VVDEIVDGGVILESDPQQVIQKVN 167
>ref|NP_001193850.1| coatomer subunit zeta-2 isoform 1 [Bos taurus].
Length = 210
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRE--TFHLVSKRDENVCNFLEGGLLIGGS 344
IKA+ I +N G L+K+Y ++Q+ E F+ S+ D + F GG+ I
Sbjct: 46 IKAVFILDNDGHRLLAKYYDDTFPSMKEQMAFEKNVFNKTSRTDSEIAFF--GGMTI--- 100
Query: 345 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF-ENVCELDLIFHVDKVHN 521
+Y+ L+ S E+EL ++ ++ E+L+ +NV + L+ ++D
Sbjct: 101 ----VYKSSIDLFLYVVGSSYENELMLMSVLTCLFESLNHVLRKNVEKRWLLENMDGAFL 156
Query: 522 ILAEMVMGGMVLETNMNEIVTQID 593
++ E+V GG++LE++ +++ +++
Sbjct: 157 VVDEIVDGGVILESDPQQVIQKVN 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,840,207
Number of extensions: 798108
Number of successful extensions: 1694
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1685
Number of HSP's successfully gapped: 10
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536191.2| PREDICTED: similar to Adapter-related protein c... 331 7e-91
Alignment gi|XP_849444.1| PREDICTED: similar to Adapter-related protein c... 318 5e-87
Alignment gi|XP_858735.1| PREDICTED: similar to Adapter-related protein c... 306 2e-83
Alignment gi|XP_533634.1| PREDICTED: similar to Clathrin coat assembly pr... 114 2e-25
Alignment gi|XP_854230.1| PREDICTED: similar to Adapter-related protein c... 108 7e-24
Alignment gi|XP_861120.1| PREDICTED: similar to Adapter-related protein c... 104 2e-22
Alignment gi|XP_850275.1| PREDICTED: similar to Adapter-related protein c... 104 2e-22
Alignment gi|XP_536088.2| PREDICTED: similar to adaptor-related protein c... 103 2e-22
Alignment gi|XP_537405.1| PREDICTED: similar to Adapter-related protein c... 93 4e-19
Alignment gi|XP_865231.1| PREDICTED: similar to adaptor-related protein c... 67 3e-11
>ref|XP_536191.2| PREDICTED: similar to Adapter-related protein complex 3 sigma 2
subunit (Sigma-adaptin 3b) (AP-3 complex sigma-3B
subunit) (Sigma-3B-adaptin) [Canis familiaris].
Length = 193
Score = 331 bits (849), Expect = 7e-91
Identities = 161/189 (85%), Positives = 177/189 (93%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+AIL+FNNHGKPRL +FYQ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
E+VMGGMVLETNMNEIV QI+AQN+LEKSE GL+ APARAVSAVKN+NLPEIPRNINIG
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG 180
Query: 708 DISIKVPNL 734
D++IKVPNL
Sbjct: 181 DLNIKVPNL 189
>ref|XP_849444.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 2 [Canis
familiaris].
Length = 169
Score = 318 bits (816), Expect = 5e-87
Identities = 167/191 (87%), Positives = 167/191 (87%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVFCVDSSESELGILDLIQ VHNIL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQ------------------------VHNIL 96
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
Sbjct: 97 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 156
Query: 708 DISIKVPNLPS 740
DISIKVPNLPS
Sbjct: 157 DISIKVPNLPS 167
>ref|XP_858735.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 3 [Canis
familiaris].
Length = 162
Score = 306 bits (785), Expect = 2e-83
Identities = 152/158 (96%), Positives = 154/158 (97%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAP 641
AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE + +P
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSETFIFQSP 158
>ref|XP_533634.1| PREDICTED: similar to Clathrin coat assembly protein AP17 (Clathrin
coat associated protein AP17) (Plasma membrane adaptor
AP-2 17 kDa protein) (Clathrin assembly protein 2 small
chain) isoform 1 [Canis familiaris].
Length = 142
Score = 114 bits (284), Expect = 2e-25
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>ref|XP_854230.1| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B
subunit (Sigma-adaptin 1B) (Adaptor protein complex AP-1
sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin
sigma-1B subunit) (Clathrin assembly protein complex 1
sigma-1B small chain) (Sigma 1B s... [Canis familiaris].
Length = 349
Score = 108 bits (271), Expect = 7e-24
Identities = 56/151 (37%), Positives = 94/151 (62%)
Frame = +3
Query: 162 SAMIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGG 341
+A ++ +L+F+ GK RL K+Y P S+ +++I RE V R +C+FLE
Sbjct: 187 AAAMQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------ 240
Query: 342 SDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN 521
D K++Y+ YA+LYF ++ ++EL L++I +VE LDK F +VCELD+IF+ +K +
Sbjct: 241 RDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYF 300
Query: 522 ILAEMVMGGMVLETNMNEIVTQIDAQNKLEK 614
IL E ++GG V ET+ ++ I+ + L++
Sbjct: 301 ILDEFLLGGEVQETSKKNVLKAIEQADLLQE 331
>ref|XP_861120.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 3 [Canis familiaris].
Length = 144
Score = 104 bits (259), Expect = 2e-22
Identities = 58/150 (38%), Positives = 86/150 (57%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEF------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ +S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
>ref|XP_850275.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 2 [Canis familiaris].
Length = 144
Score = 104 bits (259), Expect = 2e-22
Identities = 58/150 (38%), Positives = 86/150 (57%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEF------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ +S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
>ref|XP_536088.2| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3
[Canis familiaris].
Length = 157
Score = 103 bits (258), Expect = 2e-22
Identities = 54/149 (36%), Positives = 90/149 (60%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 350
I IL+F+ GK RL K+Y + +++I RE ++ R + +F++ L
Sbjct: 5 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKEL------ 58
Query: 351 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 530
KL+Y+ YA+LYF V++ ++EL L+++ +VE LDK F NVCELD+IF+ +K + IL
Sbjct: 59 KLVYKRYASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILD 118
Query: 531 EMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
E +MGG + ET+ V I+ + L+++
Sbjct: 119 EFIMGGEIQETSKKSAVKAIEDSDTLQET 147
>ref|XP_537405.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 1 [Canis familiaris].
Length = 140
Score = 93.2 bits (230), Expect = 4e-19
Identities = 55/150 (36%), Positives = 83/150 (55%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEF------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRV----IMFNLDKVHIIL 110
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ +S
Sbjct: 111 DEMVLNGCIVETNRARILAPLLILDKMSES 140
>ref|XP_865231.1| PREDICTED: similar to adaptor-related protein complex 2, sigma 1
subunit isoform AP17delta isoform 2 [Canis familiaris].
Length = 104
Score = 67.0 bits (162), Expect = 3e-11
Identities = 43/148 (29%), Positives = 67/148 (45%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
VE L++ F NVCELDL+F+ KV+ ++
Sbjct: 50 ---------------------------------VEVLNEYFHNVCELDLVFNFYKVYTVV 76
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 77 DEMFLAGEIRETSQTKVLKQLLMLQSLE 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,221,842
Number of extensions: 804728
Number of successful extensions: 1828
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1811
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens]. 382 e-106
Alignment gi|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens]. 331 7e-91
Alignment gi|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens]. 295 5e-80
Alignment gi|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo s... 114 2e-25
Alignment gi|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens]. 108 9e-24
Alignment gi|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens]. 107 2e-23
Alignment gi|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo... 104 2e-22
Alignment gi|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens]. 101 1e-21
Alignment gi|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sa... 73 4e-13
Alignment gi|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [H... 67 3e-11
>ref|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens].
Length = 193
Score = 382 bits (981), Expect = e-106
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 180
Query: 708 DISIKVPNLPS 740
DISIKVPNLPS
Sbjct: 181 DISIKVPNLPS 191
>ref|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens].
Length = 193
Score = 331 bits (849), Expect = 7e-91
Identities = 161/189 (85%), Positives = 177/189 (93%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+AIL+FNNHGKPRL +FYQ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
E+VMGGMVLETNMNEIV QI+AQN+LEKSE GL+ APARAVSAVKN+NLPEIPRNINIG
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG 180
Query: 708 DISIKVPNL 734
D++IKVPNL
Sbjct: 181 DLNIKVPNL 189
>ref|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens].
Length = 394
Score = 295 bits (755), Expect = 5e-80
Identities = 144/169 (85%), Positives = 158/169 (93%)
Frame = +3
Query: 228 QPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSS 407
+ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD KLIYRHYATLYFVFCVDSS
Sbjct: 222 EEWPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 281
Query: 408 ESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQ 587
ESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL E+VMGGMVLETNMNEIV Q
Sbjct: 282 ESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQ 341
Query: 588 IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNL 734
I+AQN+LEKSE GL+ APARAVSAVKN+NLPEIPRNINIGD++IKVPNL
Sbjct: 342 IEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIGDLNIKVPNL 390
>ref|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo sapiens].
Length = 142
Score = 114 bits (284), Expect = 2e-25
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>ref|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens].
Length = 158
Score = 108 bits (270), Expect = 9e-24
Identities = 55/151 (36%), Positives = 95/151 (62%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 620
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 115 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 145
>ref|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens].
Length = 157
Score = 107 bits (267), Expect = 2e-23
Identities = 55/145 (37%), Positives = 90/145 (62%)
Frame = +3
Query: 180 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 359
+L+F+ GK RL K+Y P S+ +++I RE V R +C+FLE D K++
Sbjct: 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RDLKIV 57
Query: 360 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 539
Y+ YA+LYF ++ ++EL L++I +VE LDK F +VCELD+IF+ +K + IL E +
Sbjct: 58 YKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 117
Query: 540 MGGMVLETNMNEIVTQIDAQNKLEK 614
+GG V ET+ ++ I+ + L++
Sbjct: 118 LGGEVQETSKKNVLKAIEQADLLQE 142
>ref|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo sapiens].
Length = 144
Score = 104 bits (259), Expect = 2e-22
Identities = 58/150 (38%), Positives = 86/150 (57%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEY------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ +S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
>ref|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens].
Length = 154
Score = 101 bits (251), Expect = 1e-21
Identities = 53/150 (35%), Positives = 90/150 (60%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI IL+F+ GK RL K+Y + +++I RE ++ R +F++ L
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKEL----- 55
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KL+Y+ YA+LYF +++ ++EL L+++ +VE LDK F NVCELD+IF+ +K + IL
Sbjct: 56 -KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
E ++GG + ET+ V I+ + L+++
Sbjct: 115 DEFIIGGEIQETSKKIAVKAIEDSDMLQET 144
>ref|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sapiens].
Length = 159
Score = 73.2 bits (178), Expect = 4e-13
Identities = 43/118 (36%), Positives = 61/118 (51%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEY------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN 521
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ELD+ F H+
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSFFNTVFHS 112
>ref|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [Homo sapiens].
Length = 104
Score = 67.0 bits (162), Expect = 3e-11
Identities = 43/148 (29%), Positives = 67/148 (45%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
VE L++ F NVCELDL+F+ KV+ ++
Sbjct: 50 ---------------------------------VEVLNEYFHNVCELDLVFNFYKVYTVV 76
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 77 DEMFLAGEIRETSQTKVLKQLLMLQSLE 104
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,694,350
Number of extensions: 796277
Number of successful extensions: 1733
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus]. 382 e-106
Alignment gi|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus]. 331 6e-91
Alignment gi|NP_941015.2| AP-2 complex subunit sigma [Mus musculus]. 114 2e-25
Alignment gi|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus]. 108 8e-24
Alignment gi|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus]. 107 1e-23
Alignment gi|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus]. 102 4e-22
Alignment gi|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus]. 101 1e-21
Alignment gi|NP_063930.1| coatomer subunit zeta-2 [Mus musculus]. 52 1e-06
>ref|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus].
Length = 193
Score = 382 bits (981), Expect = e-106
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 180
Query: 708 DISIKVPNLPS 740
DISIKVPNLPS
Sbjct: 181 DISIKVPNLPS 191
>ref|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus].
Length = 193
Score = 331 bits (849), Expect = 6e-91
Identities = 161/189 (85%), Positives = 177/189 (93%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+AIL+FNNHGKPRL +FYQ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
E+VMGGMVLETNMNEIV QI+AQN+LEKSE GL+ APARAVSAVKN+NLPEIPRNINIG
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG 180
Query: 708 DISIKVPNL 734
D++IKVPNL
Sbjct: 181 DLNIKVPNL 189
>ref|NP_941015.2| AP-2 complex subunit sigma [Mus musculus].
Length = 142
Score = 114 bits (284), Expect = 2e-25
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>ref|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus].
Length = 158
Score = 108 bits (270), Expect = 8e-24
Identities = 55/151 (36%), Positives = 95/151 (62%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 620
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 115 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 145
>ref|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus].
Length = 160
Score = 107 bits (268), Expect = 1e-23
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Frame = +3
Query: 180 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 359
+L+F+ GK RL K+Y P S+ +++I RE V R +C+FLE D K++
Sbjct: 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RDLKIV 57
Query: 360 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 539
Y+ YA+LYF ++ ++EL L++I +VE LDK F +VCELD+IF+ +K + IL E +
Sbjct: 58 YKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 117
Query: 540 MGGMVLETNMNEIVTQIDAQNKL-EKSE 620
+GG V ET+ ++ I+ + L EK+E
Sbjct: 118 LGGEVQETSKKNVLKAIEQADLLQEKTE 145
>ref|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus].
Length = 144
Score = 102 bits (255), Expect = 4e-22
Identities = 59/150 (39%), Positives = 85/150 (56%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEY------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +KL +S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKLSES 144
>ref|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus].
Length = 154
Score = 101 bits (252), Expect = 1e-21
Identities = 53/150 (35%), Positives = 89/150 (59%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI IL+F+ GK RL K+Y + +++I R+ V R +F++ L
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKEL----- 55
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KL+Y+ YA+LYF +++ ++EL L+++ +VE LDK F NVCELD+IF+ +K + IL
Sbjct: 56 -KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
E ++GG + ET+ V I+ + L+++
Sbjct: 115 DEFIIGGEIQETSKKTAVKAIEDSDMLQET 144
>ref|NP_063930.1| coatomer subunit zeta-2 [Mus musculus].
Length = 205
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/144 (24%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQII--RETFHLVSKRDENVCNFLEGGLLIGGS 344
IKA+ I +N G+ L+K+Y ++Q++ + F+ S+ + + FL GG+ I
Sbjct: 41 IKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKTSRTESEIA-FL-GGMTI--- 95
Query: 345 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF-ENVCELDLIFHVDKVHN 521
+Y+ ++ SSE+EL ++ ++ ++L +NV + L+ ++D
Sbjct: 96 ----VYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFL 151
Query: 522 ILAEMVMGGMVLETNMNEIVTQID 593
+L E V GG++LE++ +++ +++
Sbjct: 152 VLDETVDGGVILESDPQQVIQKVN 175
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,635,448
Number of extensions: 688295
Number of successful extensions: 1612
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1604
Number of HSP's successfully gapped: 8
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 331 4e-91
Alignment gi|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like... 328 4e-90
Alignment gi|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 295 3e-80
Alignment gi|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [... 114 1e-25
Alignment gi|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-lik... 108 6e-24
Alignment gi|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like... 107 1e-23
Alignment gi|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432... 105 5e-23
Alignment gi|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa]. 104 1e-22
Alignment gi|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like... 65 7e-11
Alignment gi|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like... 65 7e-11
>ref|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 1 [Sus scrofa].
Length = 193
Score = 331 bits (849), Expect = 4e-91
Identities = 161/189 (85%), Positives = 177/189 (93%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+AIL+FNNHGKPRL +FYQ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
E+VMGGMVLETNMNEIV QI+AQNKLEKSE GL+ APARAVSAVKN+NLPE+PRNINIG
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNKLEKSEGGLSAAPARAVSAVKNINLPEMPRNINIG 180
Query: 708 DISIKVPNL 734
D++IKVPNL
Sbjct: 181 DLNIKVPNL 189
>ref|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like, partial [Sus scrofa].
Length = 189
Score = 328 bits (840), Expect = 4e-90
Identities = 164/189 (86%), Positives = 173/189 (91%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK ILIFNN G+ +L KFYQPYS DTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
Sbjct: 1 MIKVILIFNNQGRQQLPKFYQPYSRDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
NKLIYRHYATLYFVF VDSS++ELGILDLIQVFVETL+KCFEN+CELDLIFHVDK+HNIL
Sbjct: 61 NKLIYRHYATLYFVFHVDSSQTELGILDLIQVFVETLEKCFENICELDLIFHVDKLHNIL 120
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG 707
A+MVMGG VLE N IVTQIDAQNKLEKS AGLAGAPA A+SAVKNMNLPE PRNIN
Sbjct: 121 ADMVMGGKVLEANXXXIVTQIDAQNKLEKSGAGLAGAPACALSAVKNMNLPETPRNINTA 180
Query: 708 DISIKVPNL 734
DISIKVPNL
Sbjct: 181 DISIKVPNL 189
>ref|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 2 [Sus scrofa].
Length = 394
Score = 295 bits (755), Expect = 3e-80
Identities = 144/169 (85%), Positives = 158/169 (93%)
Frame = +3
Query: 228 QPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSS 407
+ + E+ QQQI+RETFHLV KRD+N+CNFLEGG LIGGSD KLIYRHYATLYFVFCVDSS
Sbjct: 222 EEWPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 281
Query: 408 ESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQ 587
ESELGILDLIQVFVETLDKCFENVCELDLIFH+DKVH IL E+VMGGMVLETNMNEIV Q
Sbjct: 282 ESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQ 341
Query: 588 IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNL 734
I+AQNKLEKSE GL+ APARAVSAVKN+NLPE+PRNINIGD++IKVPNL
Sbjct: 342 IEAQNKLEKSEGGLSAAPARAVSAVKNINLPEMPRNINIGDLNIKVPNL 390
>ref|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [Sus scrofa].
Length = 142
Score = 114 bits (284), Expect = 1e-25
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 55 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLE 611
EM + G + ET+ +++ Q+ LE
Sbjct: 115 DEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>ref|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-like [Sus scrofa].
Length = 158
Score = 108 bits (270), Expect = 6e-24
Identities = 55/151 (36%), Positives = 95/151 (62%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 620
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 115 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 145
>ref|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 157
Score = 107 bits (267), Expect = 1e-23
Identities = 55/145 (37%), Positives = 90/145 (62%)
Frame = +3
Query: 180 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 359
+L+F+ GK RL K+Y P S+ +++I RE V R +C+FLE D K++
Sbjct: 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RDLKIV 57
Query: 360 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 539
Y+ YA+LYF ++ ++EL L++I +VE LDK F +VCELD+IF+ +K + IL E +
Sbjct: 58 YKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 117
Query: 540 MGGMVLETNMNEIVTQIDAQNKLEK 614
+GG V ET+ ++ I+ + L++
Sbjct: 118 LGGEVQETSKKNVLKAIEQADLLQE 142
>ref|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432 [Sus scrofa].
Length = 349
Score = 105 bits (262), Expect = 5e-23
Identities = 56/158 (35%), Positives = 92/158 (58%)
Frame = +3
Query: 171 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 350
I IL+F+ GK RL K+Y + +++I RE ++ R + +F++ L
Sbjct: 197 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFIDWKEL------ 250
Query: 351 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 530
KL+Y+ YA+LYF V++ ++EL L+++ +VE LDK F NVCELD+IF+ +K + IL
Sbjct: 251 KLVYKRYASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILD 310
Query: 531 EMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPA 644
E +MGG + ET+ V I+ + L+++ PA
Sbjct: 311 EFIMGGEIQETSKKSAVKAIEDSDMLQETMEEYMNKPA 348
>ref|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa].
Length = 144
Score = 104 bits (259), Expect = 1e-22
Identities = 58/150 (38%), Positives = 86/150 (57%)
Frame = +3
Query: 168 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 347
MIK L+ N G+ RLSK+Y+ + + + E R C+F+E D
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEY------KD 54
Query: 348 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 527
KLIYR YA L+ V V+ +E+E+ I + I FVE LD+ F V ELD++F++DKVH IL
Sbjct: 55 FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
Query: 528 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 617
EMV+ G ++ETN I+ + +K+ +S
Sbjct: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
>ref|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 119
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +3
Query: 369 YATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGG 548
YA+LYF ++ ++EL L++I +VE LDK F+ VCELD+IF+ +K + IL E ++G
Sbjct: 23 YASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLGE 82
Query: 549 MVLETNMNEIVTQIDAQNKLEK 614
V ET+ ++ + + L++
Sbjct: 83 EVQETSKKNVLKATEQADLLQE 104
>ref|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 146
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +3
Query: 369 YATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGG 548
YA+LYF ++ ++EL L++I +VE LDK F+ VCELD+IF+ +K + IL E ++G
Sbjct: 50 YASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLGE 109
Query: 549 MVLETNMNEIVTQIDAQNKLEK 614
V ET+ ++ + + L++
Sbjct: 110 EVQETSKKNVLKATEQADLLQE 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,587,853
Number of extensions: 539064
Number of successful extensions: 1009
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002529
(1152 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1461 0.0
Sscrofa_Chr01 1255 0.0
Sscrofa_Chr13 1041 0.0
Sscrofa_Chr11 1005 0.0
gb|GL895071.2| Sus scrofa unplaced genomic scaffold ChrUScaf2955 638 e-180
Sscrofa_Chr02 620 e-175
Sscrofa_Chr04 541 e-151
Sscrofa_Chr14 291 4e-76
Sscrofa_Chr07 178 4e-42
Sscrofa_Chr10 111 9e-22
>Sscrofa_Chr03
|| Length = 144787322
Score = 1461 bits (737), Expect = 0.0
Identities = 994/1080 (92%), Gaps = 18/1080 (1%)
Strand = Plus / Plus
Query: 81 aaggatcgccagagagatccgaggcgagcctcgcgcgcccgcccccgccctggcccccag 140
|||||||||||| ||||||||||| || |||| |||| |||| |||||||||||||||
Sbjct: 134264995 aaggatcgccagtgagatccgaggggaacctctgccgcctgccctcgccctggcccccag 134265054
Query: 141 ctcccacccggtgggcccggctcagccatgatcaaggcgatcctcatctttaataaccac 200
|||||||||||||||||||||||||||| |||| |||| || ||||||||||||||
Sbjct: 134265055 ctcccacccggtgggcccggctcagccaggatcgaggc-----tcgtctttaataaccac 134265109
Query: 201 gggaagccgcggctctccaagttctaccagccctacagtgaagatacacaacagcaaatc 260
||||||||||||||| |||||||| ||||||||||||||||||| || || |||||||||
Sbjct: 134265110 gggaagccgcggctcgccaagttccaccagccctacagtgaagacaccca-cagcaaatc 134265168
Query: 261 atcagggagacattccatttggtgtctaagagggatgagaatgtttgtaatttcctagaa 320
||||||||||||| |||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct: 134265169 atcagggagacatcccatttggtgtctaagagagatgagcatgtttgcaacttcctagaa 134265228
Query: 321 ggaggattattaattggaggatctgacaacaaactgatttatagacattatg-caacatt 379
||||||||||| ||||||||||| | |||| |||||||||||||||||| |||||||
Sbjct: 134265229 ggaggattatt----ggaggatctgagagcaaagtgatttatagacattatggcaacatt 134265284
Query: 380 gtattttgtcttctgtgtggattcttcagaaagtgaacttggcattttagatctaattca 439
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 134265285 gtatttcgtcttctgtgtggattcttcagaaggtgaacttggcattttagatctaattca 134265344
Query: 440 agtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaatttt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134265345 agtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttagtttt 134265404
Query: 500 ccatgtagataaggttcacaatattcttgcagaaatggtgatggga----ggaatggtat 555
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 134265405 ccatgtagataaggttcacaatattcttgcggaaatggtgatgggagggaggaatggtac 134265464
Query: 556 tggagaccaacatgaatgagattgttacacaaattgatgcgcaaaataaactggagaaat 615
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
Sbjct: 134265465 tggagaccaacatgaatgagactgtgacacaaactgatgcgcaaaataaactggagaagt 134265524
Query: 616 ctgaggctggcttagcaggagctccagcccgtgctgtatcagctgtaaagaatatgaatc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134265525 ctgaggctggcttagcaggagctccagcccgtgctgtatcagctgtaaagaatatgaatc 134265584
Query: 676 ttcctgagatcccaagaaatattaacattggtgacatcagtataaaagtgccaaacctgc 735
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 134265585 ttcctgagatcccaagaaatatcaacattggtgacatcagtataaaagtgccaaacctgc 134265644
Query: 736 cctcnnnnnnnnnnnnnnnnnnnnnnnccactcccaggtaaaatccagggggaagagtca 795
|||| ||||||||||||||||||||| |||||||||||
Sbjct: 134265645 cctctttgaaataaaaaattgaaaaggccactcccaggtaaaatccagagggaagagtca 134265704
Query: 796 tctaagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaacttttgctc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134265705 tctaagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaacttttgctc 134265764
Query: 856 ttggatttaagtcaaggtactgtatagaagttatgtaaaatctgtatcgaagttcaacat 915
|||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct: 134265765 ttggatttgagtcaaggtactatacagaagttatgtaaaatctgtatggaagttcaacat 134265824
Query: 916 tgcttttcttgctcagtgattttgaagaaattgagtagttccaagtgtga-ttttttctt 974
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 134265825 tgcttttcttgctcagtgattttgaagaaattgagtagttccaagtgtgatttttttctt 134265884
Query: 975 tcttttctaaactgcattcctatggccacctaaggcatgcctctatgtattggctactac 1034
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 134265885 tcttttctaaactgcattcctatggccacctgaggcatgtctctatgtattggctactac 134265944
Query: 1035 agtattccgaaaagtg-tttgagacatctctttaaattatgtacaacccaaaatgttggt 1093
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 134265945 agtatttcgaaaagtgttttgagacatttctttaaattatgtacaacccaaaatgttggt 134266004
Query: 1094 gttttgaatggatca-aagtgcagcgttccttaattccttctgttatctgtcacaattgt 1152
|||||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 134266005 gttttgtatggatcacaagtgcagccttctttaattccttctgttatctgtcacaattgt 134266064
>Sscrofa_Chr01
|| Length = 315321322
Score = 1255 bits (633), Expect = 0.0
Identities = 955/1062 (89%), Gaps = 16/1062 (1%)
Strand = Plus / Minus
Query: 101 gaggcgagcctcgcgcgcccgccccc-gccctggcccccagctcccacccggtgggcccg 159
||||||||||||| | |||| ||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 265779556 gaggcgagcctcgtgtgcccaccccccgccctggcccccagctcccacccagtgtgccca 265779497
Query: 160 gctcagccatgatcaaggcgatcctcatctttaataaccacgggaagccgcggctctcca 219
|||||||||||||||||| |||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 265779496 gctcagccatgatcaaggtgatcctcatctttagtgaccataggaagccgcagctctcca 265779437
Query: 220 agttctaccagccctacagtgaagatacacaacagcaaatcatcagggagacattccatt 279
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265779436 aattttaccagccctacagtgaagatacacaacaacaaatcatcagggagacattccatt 265779377
Query: 280 tggtgtctaagagggatgagaatgtttgtaatttcctagaaggaggattattaattggag 339
|||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 265779376 tggtatctaagagagatgagaatgt----aatttcccagaaggaggattattaattggag 265779321
Query: 340 gatctgacaacaaactgatttatagacattatgcaacattgtattttgtcttctgtgtgg 399
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 265779320 aatctgacagcaaactgatttatagacattatgcaacattatattttgttttctgtgtgt 265779261
Query: 400 attcttcagaaagtgaacttggcattttagatctaattcaagtatttgtggaaacattag 459
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265779260 attcttcagaaagtgtacctggcattttagatctaattcaaatatttgtggaaacattag 265779201
Query: 460 acaagtgttttgaaaatgtctgtgaactggatttaattttccatgtagataaggttcaca 519
|||| ||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 265779200 acaaatgttttgaaaacgtctgtgaactggatttaactttccatgtaggtaag-ttcaca 265779142
Query: 520 atattcttgcagaaatggtgatgggaggaatggtattggagaccaacatgaatgagattg 579
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 265779141 atatacttgcagaaatggtgatgggagaaatggtattggagaccaacatgaatgagactg 265779082
Query: 580 ttacacaaattgatgcgcaaaataaactggagaaatctgaggctggcttagcaggagctc 639
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265779081 ttacacaagatgatgcacaaaataaactggagaaatatgaggctggcttagcaggagctc 265779022
Query: 640 cagcccgtgctgtatcagctgtaaagaatatgaatcttcctgagatcccaagaaatatta 699
||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 265779021 cagcctgtgctatatcagctgtgaagaatatgaatctttctgagatcccaagaaatatta 265778962
Query: 700 acattggtgacatcagt---ataaaagtgccaaacctgccctcnnnnnnnnnnnnnnnnn 756
||||||||||||||||| ||||||||| ||| | |||||||
Sbjct: 265778961 acattggtgacatcagtagtataaaagtgtcaa-catgccctcttttaaataaaaaattt 265778903
Query: 757 nnnnnnccactcccaggtaaaatccagggggaagagtcatctaagtttaccatgcagttg 816
||| ||| ||||||||||||| ||||| |||||||| ||||||||| |||||||
Sbjct: 265778902 aaaaggccattccaaggtaaaatccagtgggaaaagtcatctgagtttaccacgcagttg 265778843
Query: 817 tttaccaaaaatagaggaggagagtcttaactt--ttgctcttggatttaagtcaaggta 874
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265778842 tttaccaaaaatagaggaggagagtcttaacttatttgctcttggatttaagtcaaggta 265778783
Query: 875 ctgtatagaagttatgtaaaatctgtatcgaagttcaacattgcttttcttgctcagtga 934
|||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 265778782 ctgtatagaagttaggtaaaatctgtatggaagtttgaccttgcttttcttgctcagtga 265778723
Query: 935 ttttgaagaaattgagtagttccaagtgtgatttttt---ctttcttttctaaactgcat 991
||||||||||||||||||||||| ||| ||||||||| ||| |||||| |||||||||
Sbjct: 265778722 ttttgaagaaattgagtagttccgagtatgatttttttttcttccttttcgaaactgcat 265778663
Query: 992 tcctatggccacctaaggcatgcctctatgtattggctactacagtattccgaaaagtgt 1051
||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct: 265778662 tcctatggccacctaaggcatgcctctatgtattgactactacagtatttcaaaaagtgt 265778603
Query: 1052 ttgagacatctctttaaattatgtacaacccaaaatgttggtgttttgaatggatca-aa 1110
|| |||||| ||||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct: 265778602 ttcagacatttctttaaattatgtacaacccaaaatgttggcgttctgtatggatcacaa 265778543
Query: 1111 gtgcagcgttccttaattccttctgttatctgtcacaattgt 1152
||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 265778542 gtgcagcattccttaattccttctgttatatgtcacaattgt 265778501
Score = 521 bits (263), Expect = e-145
Identities = 359/388 (92%), Gaps = 6/388 (1%)
Strand = Plus / Plus
Query: 771 aggtaaaatccagggggaagagtcatctaagtttaccatgcagttgtttaccaaaaatag 830
||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct: 265651006 aggtaaaatccagtgggaaaagtcatctgagtttaccacgcagttgtttaccaaaaatag 265651065
Query: 831 aggaggagagtcttaactt--ttgctcttggatttaagtcaaggtactgtatagaagtta 888
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265651066 aggaggagagtcttaacttatttgctcttggatttaagtcaaggtactgtatagaagtta 265651125
Query: 889 tgtaaaatctgtatcgaagttcaacattgcttttcttgctcagtgattttgaagaaattg 948
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 265651126 ggtaaaatctgtatggaagtttgaccttgcttttcttgctcagtgattttgaagaaattg 265651185
Query: 949 agtagttccaagtgtgatttttt---ctttcttttctaaactgcattcctatggccacct 1005
||||||||| ||| ||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct: 265651186 agtagttccgagtatgatttttttttcttccttttcgaaactgcattcctatggccacct 265651245
Query: 1006 aaggcatgcctctatgtattggctactacagtattccgaaaagtgtttgagacatctctt 1065
||||||||||||||||||||| ||||||||||||| | |||||||||| |||||| ||||
Sbjct: 265651246 aaggcatgcctctatgtattgactactacagtatttcaaaaagtgtttcagacatttctt 265651305
Query: 1066 taaattatgtacaacccaaaatgttggtgttttgaatggatca-aagtgcagcgttcctt 1124
||||||||||||||||||||||||||| ||| || |||||||| ||||||||| ||||||
Sbjct: 265651306 taaattatgtacaacccaaaatgttggcgttctgtatggatcacaagtgcagcattcctt 265651365
Query: 1125 aattccttctgttatctgtcacaattgt 1152
||||||||||||||| ||||||||||||
Sbjct: 265651366 aattccttctgttatatgtcacaattgt 265651393
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 683 gatcccaagaaatattaacattggtgacatcagta 717
|||||||||||||||||||||||||||||||||||
Sbjct: 265650916 gatcccaagaaatattaacattggtgacatcagta 265650950
>Sscrofa_Chr13
|| Length = 218635234
Score = 1041 bits (525), Expect = 0.0
Identities = 780/869 (89%), Gaps = 4/869 (0%)
Strand = Plus / Plus
Query: 81 aaggatcgccagagagatcc-gaggcgagcctcgcgcgcccgcccccgccctggccccca 139
|||||| ||||| ||||||| |||| ||||||| | |||| |||| |||||||||||||
Sbjct: 134116793 aaggatagccagcgagatcccgaggtgagcctcacatgccctcccctgccctggccccca 134116852
Query: 140 gctcccacccggtgggcccggctcagccatgatcaaggcgatcctcatctttaataacca 199
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 134116853 actcccacccagtgggcccagctcagccatgatcaaggtgatcctcatctttaataacca 134116912
Query: 200 cgggaagccgcggctctccaagttctaccagccctacagtgaagatacacaacagcaaat 259
|||| || || |||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 134116913 ggggaggcagcagctccccaagttctaccagccctacagcagagatacacaacaacaaat 134116972
Query: 260 catcagggagacattccatttggtgtctaagagggatgagaatgtttgtaatttcctaga 319
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 134116973 catcagggagacattccatttggtatctaagagagatgagaatgtttgtaatttcctaga 134117032
Query: 320 aggaggattattaattggaggatctgacaacaaactgatttatagacattatgcaacatt 379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134117033 agggggattattaattggaggatctgacaacaaactgatttatagacattatgcaacatt 134117092
Query: 380 gtattttgtcttctgtgtggattcttcagaaagtgaacttggcattttagatctaattca 439
|||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 134117093 atattttgtcttccatgtggactcttcccaaactgaacttggcattttagatctaattca 134117152
Query: 440 agtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaatttt 499
||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 134117153 agtatttgtggaaacattagagaagtgttttgaaaacatctgtgaattggatttaatttt 134117212
Query: 500 ccatgtagataaggttcacaatattcttgcagaaatggtgatgggaggaatggtattgga 559
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 134117213 ccatgtagataagcttcacaatattcttgcagatatggtgatgggaggaaaggtattgga 134117272
Query: 560 gaccaacatgaatgagattgttacacaaattgatgcgcaaaataaactggagaaatctga 619
| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134117273 ggcca--atggatgagattgttacacaaattgatgcacaaaataaactggagaaatctgg 134117330
Query: 620 ggctggcttagcaggagctccagcccgtgctgtatcagctgtaaagaatatgaatcttcc 679
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 134117331 ggctggcttagcaggagctccagcctgtgctttatcagctgtaaagaatatgaaccttcc 134117390
Query: 680 tgagatcccaagaaatattaacattggtgacatcagtataaaagtgccaaacctgccctc 739
||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct: 134117391 tgagaccccaagaaatattaacactgctgacatcagtataaaagtgccaaacctgtcctc 134117450
Query: 740 nnnnnnnnnnnnnnnnnnnnnnnccactcccaggtaaaatccaggggg-aagagtcatct 798
||||||||||||||||||||||||| || ||| ||||
Sbjct: 134117451 ttttaaataaaaaatttaaaaggccactcccaggtaaaatccagggggaaaaagttatct 134117510
Query: 799 aagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaacttttgctcttg 858
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134117511 aagtttactatgcagttgtttaccaaaaatagaggagatgagtcttaacttttgctctta 134117570
Query: 859 gatttaagtcaaggtactgtatagaagttatgtaaaatctgtatcgaagttcaacattgc 918
|| |||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||
Sbjct: 134117571 gacttaagtcaaggtactgtataaaagttatgtaaaatctgtacagaagctcaacgttgc 134117630
Query: 919 ttttcttgctcagtgattttgaagaaatt 947
|||||||||||||||||| ||||||||||
Sbjct: 134117631 ttttcttgctcagtgattctgaagaaatt 134117659
Score = 125 bits (63), Expect = 6e-26
Identities = 86/93 (92%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 951 tagttccaagtgtgatttt---ttctttcttttctaaactgcattcctatggccacctaa 1007
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 134117686 tagttccaagtgtgatttttttttctttcttttctaaactgcattcctatggccatctat 134117745
Query: 1008 ggcatgcctctatgtattggctactacagtatt 1040
|||||||||||||||||| |||||||||||||
Sbjct: 134117746 ggcatgcctctatgtatttactactacagtatt 134117778
Score = 117 bits (59), Expect = 1e-23
Identities = 90/99 (90%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1051 tttgagacatctctttaaattatgtacaacccaaaatgttggtgttttgaatggatc-aa 1109
||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct: 134118052 tttgagacagttctttaagttatgtacaacccaaaatgttggtgttttgtatggatcgca 134118111
Query: 1110 agtgcagcgttccttaattccttctgttatctgtcacaa 1148
|||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 134118112 agtgcagcattccttaattctttctgttatttgtcacaa 134118150
>Sscrofa_Chr11
|| Length = 87690581
Score = 1005 bits (507), Expect = 0.0
Identities = 801/902 (88%), Gaps = 16/902 (1%)
Strand = Plus / Plus
Query: 267 gagacattccatttggtgtctaagagggatgagaatgtttgtaatttcctagaaggagga 326
|||||||||||||| || || ||||| |||||||| || ||||||||||||||| |||||
Sbjct: 60569056 gagacattccattttgtctcaaagagagatgagaaggtatgtaatttcctagaatgagga 60569115
Query: 327 ttattaattggaggatctgacaacaaactgatttatagacattatgcaacattgtatttt 386
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 60569116 ttattaattggaggacccgacaacaaactgatttatagacattatgcaacattatatttc 60569175
Query: 387 gtcttctgtgtggattcttcagaaagtgaacttggcattttagatctaattcaagtattt 446
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60569176 atcttctgtatcgattcttcagaaagtgaacttggcattttagatctaattcaagtattt 60569235
Query: 447 gtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaattttccatgta 506
|||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 60569236 gtggaaactttagataagtgttttgaaaatatctgtgaactggatttaattttccatgta 60569295
Query: 507 gataaggttcacaatattcttgcagaaatggtgatgggaggaatggtattggagaccaac 566
|||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 60569296 gataaggttcacaatattcttgcagaaatgacaatgcaaggagtggtactggagaccaac 60569355
Query: 567 atgaatgagattgttacacaaattgatgcgcaaaataaactggagaaatctgaggctggc 626
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 60569356 atgaatgagattgttacacaaattgatgcacaaagtaaactggagaaatctgaggctggc 60569415
Query: 627 ttagcaggagctccagcccgtgctg----------tatcagctgtaaagaatatgaatct 676
|||||||| |||||||||| ||||| |||||| ||||||||| ||||||||
Sbjct: 60569416 ttagcaggggctccagcccatgctgtatcagttgttatcagttgtaaagaacatgaatct 60569475
Query: 677 tcctgagatcccaagaaatattaacattggtgacatcagtataaaagtgccaaacctgcc 736
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct: 60569476 tcctgagatcccaataaatactaacattggtgacaacagtataaaagtgccaaatctgcc 60569535
Query: 737 ctcnnnnnnnnnnnnnnnnnnnnnnnccactcccaggtaaaatccagggggaagagtcat 796
|| |||||||||||||||||||||||||||| | |||
Sbjct: 60569536 cttttttaactaaaaaatttaaaaggccactcccaggtaaaatccagggggaagggccat 60569595
Query: 797 ctaagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaac--ttttgct 854
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 60569596 ctaagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaacttttttgct 60569655
Query: 855 cttggatttaagtcaaggtactgtatagaagttatgtaaaatctgtatcgaagttcaaca 914
|||||||||||||||| |||||||| |||| ||| ||||||||||||| |||||||||||
Sbjct: 60569656 cttggatttaagtcaaagtactgtacagaaattacgtaaaatctgtatggaagttcaaca 60569715
Query: 915 ttgcttttcttgctcagtga-ttttgaagaaattgagtagttccaagtgtgatt-ttttc 972
|||||||| ||||||||||| ||||||||||||| ||||| ||||| |||| || ||
Sbjct: 60569716 ttgcttttattgctcagtgatttttgaagaaattccatagttgcaagtacgattcttctc 60569775
Query: 973 tttcttttctaaactgcattcctatggccacctaaggcatgcctctatgtattggctact 1032
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 60569776 tttcttttctaaaatgcattcctatggccacctaaggcatgcctctaggtattggctact 60569835
Query: 1033 acagtattccgaaaagtg-tttgagacatctctttaaattatgtacaacccaaaatgttg 1091
| |||||| |||||| || |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 60569836 atagtatttcgaaaaatgttttgagacattgctttaaattgtgtacaacccaaaatgttg 60569895
Query: 1092 gtgttttgaatggatca-aagtgcagcgttccttaattccttctgttatctgtcacaatt 1150
|||||||| |||||||| ||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 60569896 gtgttttgtatggatcacaagggcagcattccttaattccttctgttatttgtcacaatt 60569955
Query: 1151 gt 1152
||
Sbjct: 60569956 gt 60569957
>gb|GL895071.2| Sus scrofa unplaced genomic scaffold ChrUScaf2955
Length = 67393
Score = 638 bits (322), Expect = e-180
Identities = 446/486 (91%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 81 aaggatcgccagagagatcc-gaggcgagcctcgcgcgcccgcccccgccctggccccca 139
|||||| ||||| ||||||| |||| ||||||| | |||| |||| |||||||||||||
Sbjct: 16154 aaggatagccagcgagatcccgaggtgagcctcacatgccctcccctgccctggccccca 16095
Query: 140 gctcccacccggtgggcccggctcagccatgatcaaggcgatcctcatctttaataacca 199
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 16094 actcccacccagtgggcccagctcagccatgatcaaggtgatcctcatctttaataacca 16035
Query: 200 cgggaagccgcggctctccaagttctaccagccctacagtgaagatacacaacagcaaat 259
|||| || || |||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 16034 ggggaggcagcagctccccaagttctaccagccctacagcagagatacacaacaacaaat 15975
Query: 260 catcagggagacattccatttggtgtctaagagggatgagaatgtttgtaatttcctaga 319
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 15974 catcagggagacattccatttggtatctaagagagatgagaatgtttgtaatttcctaga 15915
Query: 320 aggaggattattaattggaggatctgacaacaaactgatttatagacattatgcaacatt 379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15914 agggggattattaattggaggatctgacaacaaactgatttatagacattatgcaacatt 15855
Query: 380 gtattttgtcttctgtgtggattcttcagaaagtgaacttggcattttagatctaattca 439
|||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 15854 atattttgtcttccatgtggactcttcccaaactgaacttggcattttagatctaattca 15795
Query: 440 agtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaatttt 499
||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 15794 agtatttgtggaaacattagagaagtgttttgaaaacatctgtgaattggatttaatttt 15735
Query: 500 ccatgtagataaggttcacaatattcttgcagaaatggtgatgggaggaatggtattgga 559
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 15734 ccatgtagataagcttcacaatattcttgcagatatggtgatgggaggaaaggtattgga 15675
Query: 560 gaccaa 565
| ||||
Sbjct: 15674 ggccaa 15669
Score = 252 bits (127), Expect = 4e-64
Identities = 151/159 (94%)
Strand = Plus / Minus
Query: 576 attgttacacaaattgatgcgcaaaataaactggagaaatctgaggctggcttagcagga 635
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 15565 attgttacacaaattgatgcacaaaataaactggagaaatctggggctggcttagcagga 15506
Query: 636 gctccagcccgtgctgtatcagctgtaaagaatatgaatcttcctgagatcccaagaaat 695
||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 15505 gctccagcctgtgctttatcagctgtaaagaatatgaaccttcctgagaccccaagaaat 15446
Query: 696 attaacattggtgacatcagtataaaagtgccaaacctg 734
||||||| || ||||||||||||||||||||||||||||
Sbjct: 15445 attaacactgctgacatcagtataaaagtgccaaacctg 15407
Score = 246 bits (124), Expect = 2e-62
Identities = 170/184 (92%), Gaps = 1/184 (0%)
Strand = Plus / Minus
Query: 765 actcccaggtaaaatccagggggaaga-gtcatctaagtttaccatgcagttgtttacca 823
||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||
Sbjct: 15305 actcccaggtaaaatccagggggaaaaagttatctaagtttactatgcagttgtttacca 15246
Query: 824 aaaatagaggaggagagtcttaacttttgctcttggatttaagtcaaggtactgtataga 883
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 15245 aaaatagaggagatgagtcttaacttttgctcttagacttaagtcaaggtactgtataaa 15186
Query: 884 agttatgtaaaatctgtatcgaagttcaacattgcttttcttgctcagtgattttgaaga 943
|||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||
Sbjct: 15185 agttatgtaaaatctgtacagaagctcaacgttgcttttcttgctcagtgattctgaaga 15126
Query: 944 aatt 947
||||
Sbjct: 15125 aatt 15122
Score = 111 bits (56), Expect = 9e-22
Identities = 73/78 (93%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 951 tagttccaagtgtgatttttt---ctttcttttctaaactgcattcctatggccacctaa 1007
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 15095 tagttccaagtgtgatttttttttctttcttttctaaactgcattcctatggccatctat 15036
Query: 1008 ggcatgcctctatgtatt 1025
||||||||||||||||||
Sbjct: 15035 ggcatgcctctatgtatt 15018
>Sscrofa_Chr02
|| Length = 162569375
Score = 620 bits (313), Expect = e-175
Identities = 515/579 (88%), Gaps = 5/579 (0%)
Strand = Plus / Plus
Query: 127 gccctggcccccagctcccacccggtgggcccggctcagccatgatcaaggcgatcctca 186
|||||||| || |||||||| | |||| || |||||| ||||||||||| | |||||
Sbjct: 57422895 gccctggctcctggctcccacacagtggtcctggctcacccatgatcaagttgtgcctca 57422954
Query: 187 tctttaataaccacgggaagccgcggctctccaagttctaccagccctacagtgaagata 246
||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 57422955 tctttaataaccatgggaagctgaaattctccaagttctaccagccctacagtgaagata 57423014
Query: 247 cacaacagcaaatcatcagggagacattccatttggtg-tctaagagggatgagaatgtt 305
||||||| |||||||||||||||||||||||||| | |||| ||| |||||||||||
Sbjct: 57423015 cacaacaacaaatcatcagggagacattccatttttttatctatgagaaatgagaatgtt 57423074
Query: 306 tgtaatttcctagaaggaggattattaattggaggatctgacaacaaactgatttataga 365
||||||||||| |||||| ||||| |||||||| |||||||||||| |||| ||||| |
Sbjct: 57423075 tgtaatttcctggaaggaagattaataattggatcatctgacaacaagctgacttataaa 57423134
Query: 366 cattatgcaacattgtattttgtcttctgtgtggattcttcagaaagtgaacttggcatt 425
|||||||| |||| |||||||| ||||||||| |||||| |||| ||||||||||||||
Sbjct: 57423135 cattatgctacataatattttgttttctgtgtgtattctttagaacgtgaacttggcatt 57423194
Query: 426 ttagatctaattcaagtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaa 485
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57423195 ttggatctaattcaagtatttgtggaaacattagacaagtgttttgaaaatgtctg---c 57423251
Query: 486 ctggatttaattttccatgtagataaggttcacaatattcttgcagaaatggtgatggga 545
||||||||| || |||||||||||||| ||||||| |||||| ||||||||||| ||||
Sbjct: 57423252 ttggatttaacttgccatgtagataagg-tcacaatgttcttgaagaaatggtgacggga 57423310
Query: 546 ggaatggtattggagaccaacatgaatgagattgttacacaaattgatgcgcaaaataaa 605
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 57423311 ggaatggtattggagaccaacatgaatgagattgttacacaaactgaagcacaaaataaa 57423370
Query: 606 ctggagaaatctgaggctggcttagcaggagctccagcccgtgctgtatcagctgtaaag 665
|||||||||||||||||| |||||| |||||| |||||| || ||||||||||| |||||
Sbjct: 57423371 ctggagaaatctgaggctagcttagaaggagcaccagcctgttctgtatcagctataaag 57423430
Query: 666 aatatgaatcttcctgagatcccaagaaatattaacatt 704
||||||||||||||||||||||||||||| | |||||||
Sbjct: 57423431 aatatgaatcttcctgagatcccaagaaacagtaacatt 57423469
Score = 315 bits (159), Expect = 3e-83
Identities = 301/345 (87%), Gaps = 5/345 (1%)
Strand = Plus / Plus
Query: 767 tcccaggtaaaa-tccagggggaagagtcatctaagtttaccatgcagttgtttaccaaa 825
|||||||||||| || ||| |||| |||| | ||||||| | |||| ||||||||||||
Sbjct: 57423520 tcccaggtaaaaatctaggtggaaaagtcctttaagttttctttgcatttgtttaccaaa 57423579
Query: 826 aatagaggaggagagtcttaacttttgctcttggatttaagtcaaggtactgtatagaag 885
|||||||||||||||| |||||| |||||||||||||||| | |||||||| ||| |||
Sbjct: 57423580 aatagaggaggagagttttaactcttgctcttggatttaaattaaggtactatatggaac 57423639
Query: 886 ttatgtaaaatctgtatcgaagttcaacattgcttttcttgctcagtgattttgaagaaa 945
||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 57423640 ttatgtaaaatctgtatggaaattcagcatagcttttcttgctcagtgattttgaagaaa 57423699
Query: 946 ttgagtagttccaagtgtga--ttttttctttcttttctaaactgcattcctatggccac 1003
||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 57423700 ttgagtagttcaaagtgttattttttttctttcttttctaaactgtattcctatggccac 57423759
Query: 1004 ctaaggcatgcctctatgtattggctactacagtattccgaaaagtgtttgagacatctc 1063
|||||||||||| |||||||||||||||| ||||| | |||||| ||||| || |
Sbjct: 57423760 ataaggcatgcctttatgtattggctactatggtattttg--aagtgtgtgagaaattta 57423817
Query: 1064 tttaaattatgtacaacccaaaatgttggtgttttgaatggatca 1108
||| |||||||||||||| ||||| |||||||||| || |||||
Sbjct: 57423818 ttttaattatgtacaaccaaaaatactggtgttttgtatagatca 57423862
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 81 aaggatcgccagagagatccgaggcgagcctcgcgcgcccgcccccgccctggcccccag 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851684 aaggatcgccagagagatccgaggcgagcctcgcgcgcccgcccccgccctggcccccag 124851743
Query: 141 ctcccacccggtgggcccggctcagccatgatcaaggcgatcctcatctttaataaccac 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851744 ctcccacccggtgggcccggctcagccatgatcaaggcgatcctcatctttaataaccac 124851803
Query: 201 gggaagccgcggctctccaagttctaccagccctac 236
||||||||||||||||||||||||||||||||||||
Sbjct: 124851804 gggaagccgcggctctccaagttctaccagccctac 124851839
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 329 attaattggaggatctgacaacaaactgatttatagacattatgcaacattgtattttgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124942831 attaattggaggatctgacaacaaactgatttatagacattatgcaacattgtattttgt 124942772
Query: 389 cttctgtgtggattcttcagaaagtgaacttggcattttagatctaattcaagta 443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124942771 cttctgtgtggattcttcagaaagtgaacttggcattttagatctaattcaagta 124942717
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 441 gtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaattttc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124924518 gtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaactggatttaattttc 124924459
Query: 501 catgtagataaggt 514
||||||||||||||
Sbjct: 124924458 catgtagataaggt 124924445
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 caggccccgccccacccaagccccgccccgcagcctgga 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 124851604 caggccccgccccacccaagccccgccccgcagcctgga 124851642
>Sscrofa_Chr04
|| Length = 143465943
Score = 541 bits (273), Expect = e-151
Identities = 460/518 (88%), Gaps = 7/518 (1%)
Strand = Plus / Plus
Query: 127 gccctggcccccagctcccacccggtgggcccggctcagccatgatcaaggcgatcctca 186
||||||||||||||||||||| | ||||||| ||| |||||||||||||| || |||||
Sbjct: 36047382 gccctggcccccagctcccacaag-tgggcccagcttagccatgatcaaggtgagcctca 36047440
Query: 187 tctttaataaccacgggaagccgcggctctccaagttctaccagccctacagtgaagata 246
|||||| |||||| |||||||| | ||||||||||||| ||||| |||||||||||||||
Sbjct: 36047441 tctttactaacca-gggaagccacagctctccaagttccaccagtcctacagtgaagata 36047499
Query: 247 cacaacagcaaatcatcagggagacattccatttggtgtctaagagggatgagaatgttt 306
||||||| ||||||||||| |||||||||| || || |||||||| |||| |||||||
Sbjct: 36047500 cacaacaacaaatcatcag--agacattccacttagtatctaagagaaatgaaaatgttt 36047557
Query: 307 gtaatttcctagaaggaggattattaattggaggatctgacaacaaactgatttatagac 366
|||||||||||| |||||||| | |||||||||||| |||| ||| |||||||||||
Sbjct: 36047558 gtaatttcctag---gaggattactgattggaggatctaacaaagaacagatttatagac 36047614
Query: 367 attatgcaacattgtattttgtcttctgtgtggattcttcagaaagtgaacttggcattt 426
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 36047615 atcatgcaacattacattttgttttctgtgtggattcttcagaaagtgaacttgacatct 36047674
Query: 427 tagatctaattcaagtatttgtggaaacattagacaagtgttttgaaaatgtctgtgaac 486
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 36047675 tagatctaattcaagtatttgtagaagcattagacaagtgttttgaaaatgtgtgtgaat 36047734
Query: 487 tggatttaattttccatgtagataaggttcacaatattcttgcagaaatggtgatgggag 546
|||||||||||||| |||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct: 36047735 tggatttaattttctatgtagataaggttcacagtattcatgtagaaatggtgaaggaag 36047794
Query: 547 gaatggtattggagaccaacatgaatgagattgttacacaaattgatgcgcaaaataaac 606
||||||||||||| |||||| |||||||||||||||||||||||||| | | || ||||
Sbjct: 36047795 gaatggtattggaaaccaacctgaatgagattgttacacaaattgatacagagaacaaac 36047854
Query: 607 tggagaaatctgaggctggcttagcaggagctccagcc 644
| |||||| ||||||||||||||||||||||| ||||
Sbjct: 36047855 tagagaaacgtgaggctggcttagcaggagctctagcc 36047892
Score = 77.8 bits (39), Expect = 1e-11
Identities = 66/75 (88%), Gaps = 5/75 (6%)
Strand = Plus / Plus
Query: 662 aaagaatatgaatcttcctgagatcccaagaaatattaaca-----ttggtgacatcagt 716
||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||
Sbjct: 36048184 aaagaatatgaatctccctgagatcccaagaactattaatattaacttggtgacatcagt 36048243
Query: 717 ataaaagtgccaaac 731
||||||||| |||||
Sbjct: 36048244 ataaaagtgtcaaac 36048258
>Sscrofa_Chr14
|| Length = 153851969
Score = 291 bits (147), Expect = 4e-76
Identities = 284/326 (87%), Gaps = 9/326 (2%)
Strand = Plus / Plus
Query: 121 gcccccgccctggcccccagctcccacccggtgggcccggctcagccatgatcaaggcga 180
||||| |||| ||||| |||||||||| ||||||||| ||||||||| |||| || ||
Sbjct: 33476556 gccccggcccaggccctcagctcccacacggtgggcctagctcagccacaatcacggtga 33476615
Query: 181 tcctcatctttaataaccacgggaagccgcggctctccaagttctaccagccctacagtg 240
||||||||||||| ||| | || | ||| |||||||||||||||| |||||||||||||
Sbjct: 33476616 tcctcatctttaacaacgatgg-aggccatggctctccaagttctagcagccctacagtg 33476674
Query: 241 aagatacacaacagcaaatcatcagggagacattccatttggtgtctaagagggatgaga 300
|||||||||| | ||||||||||||||||||||||||||| | ||| |||||
Sbjct: 33476675 aagatacaca---ggaaatcatcagggagacattccatttggaat----gagagatgaat 33476727
Query: 301 atgtttgtaatttcctagaaggaggattattaattggaggatctgacaacaaactgattt 360
||| | |||||||||| |||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 33476728 atggt-gtaatttcctcgaaggaagactattaataggaggatctgacaacaaactgattt 33476786
Query: 361 atagacattatgcaacattgtattttgtcttctgtgtggattcttcagaaagtgaacttg 420
||| ||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 33476787 atacacaatacgcaacattatattttgtcttttgtgtggattcttcagaaagtgaacttg 33476846
Query: 421 gcattttagatctaattcaagtattt 446
||||||||||||||||||||||||||
Sbjct: 33476847 gcattttagatctaattcaagtattt 33476872
Score = 135 bits (68), Expect = 6e-29
Identities = 136/156 (87%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 816 gtttaccaaaaatagaggaggagagtcttaacttttgctcttggatttaagtcaaggtac 875
||||||||||||||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct: 33477376 gtttaccaaaaatagagaaggagagtctt-----ttgttctttgacttaagtcaaggtac 33477430
Query: 876 tgtatagaagttatgtaaaatctgtatcgaagttcaacattgcttttcttgctcagtgat 935
|||||||||||||||||| |||||||| | ||||||| |||||||||||||||| || |
Sbjct: 33477431 tgtatagaagttatgtaacatctgtat-gtggttcaacgttgcttttcttgctcaatggt 33477489
Query: 936 tttgaagaaattgagtagttccaagtgtgatttttt 971
||||||||||||||| ||| | |||||||||||||
Sbjct: 33477490 tttgaagaaattgagcggttgc-agtgtgatttttt 33477524
Score = 75.8 bits (38), Expect = 5e-11
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 687 ccaagaaatattaacattggtgacatcagtataaaagtgccaaacctgcc 736
|||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct: 33476962 ccaagaaatattaacaatggtgacatgagtataaaagtgccaaacttgcc 33477011
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1062 tctttaaattatgtacaacccaaaatgttggtgttttg 1099
|||||||||||||||||||||||| |||||||||||||
Sbjct: 33477905 tctttaaattatgtacaacccaaactgttggtgttttg 33477942
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 602 taaactggagaaatctgaggctggcttagcaggagctccagcccgtgctgtatcagctg 660
||||| |||||||||| || ||||||||||||| |||| |||| |||||| ||||||||
Sbjct: 33476898 taaacaggagaaatctaagactggcttagcaggcgctctagcctgtgctggatcagctg 33476956
>Sscrofa_Chr07
|| Length = 134764511
Score = 178 bits (90), Expect = 4e-42
Identities = 250/298 (83%), Gaps = 4/298 (1%)
Strand = Plus / Minus
Query: 217 ccaagttctaccagccctacagtgaagatacacaacagcaaatcatcagggagacattcc 276
||||||||| ||||||| ||||||||| ||| |||||||| |||| ||||||| ||||
Sbjct: 20697550 ccaagttctgtcagcccttcagtgaagacacaaaacagcaa-tcattggggagactttcc 20697492
Query: 277 atttggtgtctaagagggatgagaatgtttgtaatttcctagaaggaggattattaattg 336
||||||| |||||||| ||||||||||| | || ||| ||| ||| ||||||
Sbjct: 20697491 atttggtatctaagagagatgagaatgtgattt-ttggggggaaagagtgttactaattg 20697433
Query: 337 gaggatctgacaacaaactgatttatagacattatgcaacattgtattttgtcttctgtg 396
|||||||||| ||||||||| ||| ||| |||| ||||||||||| | |||||||||
Sbjct: 20697432 gaggatctgatgacaaactgacttacagaaattacacaacattgtatctcatcttctgtg 20697373
Query: 397 tggattcttcagaaagtgaacttggcattttagatctaattcaagtatttgtggaaacat 456
|||| ||||||| | |||||||||||||||||||||| ||| |||||| |||||||||
Sbjct: 20697372 tggacccttcagagatggaacttggcattttagatctaactcaggtattt-tggaaacat 20697314
Query: 457 tagacaagt-gttttgaaaatgtctgtgaactggatttaattttccatgtagataagg 513
|||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 20697313 tagagaagtacttttgaaagtgtctgtgaactggatttaattttccatgtagacaagg 20697256
Score = 113 bits (57), Expect = 2e-22
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 906 agttcaacattgcttttcttgctcagtgattttgaagaaattgagtagttccaagtgtga 965
||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 20696197 agttcaatgttgcttttcttgctcagtgattttaaagaaattgagtagttcc-tgtgtga 20696139
Query: 966 ttttttctttcttttctaaactgcattcctatg 998
||||| ||||||||||||||| ||||||||||
Sbjct: 20696138 ctttttttttcttttctaaacttcattcctatg 20696106
Score = 65.9 bits (33), Expect = 5e-08
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 791 agtcatctaagtttaccatgcagttgtttaccaaaaatagaggaggagagtcttaacttt 850
||||||||||| ||||||| || ||| | |||||||||||||||| ||||||| ||||
Sbjct: 20696291 agtcatctaagcttaccattcacttgctcaccaaaaatagaggag---agtcttagcttt 20696235
Query: 851 tgctcttggat 861
|||||||||||
Sbjct: 20696234 tgctcttggat 20696224
>Sscrofa_Chr10
|| Length = 79102373
Score = 111 bits (56), Expect = 9e-22
Identities = 112/130 (86%), Gaps = 3/130 (2%)
Strand = Plus / Plus
Query: 904 gaagttcaacattgcttttcttgctcagtgattttgaagaaattgagtagttccaagtgt 963
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 46416570 gaagttcactattgcttttcttgctcagtgattttaaacaaattgagtagttccaattgt 46416629
Query: 964 g---attttttctttcttttctaaactgcattcctatggccacctaaggcatgcctctat 1020
| ||||| ||||||||||||| ||||| || ||| |||||||||| |||| ||||
Sbjct: 46416630 gttcttttttcctttcttttctaagctgcagtcatattcccacctaaggtgtgccgctat 46416689
Query: 1021 gtattggcta 1030
||||||||||
Sbjct: 46416690 gtattggcta 46416699
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,236,806
Number of extensions: 544
Number of successful extensions: 544
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 37
Length of query: 1152
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1131
Effective length of database: 2,808,413,156
Effective search space: 3176315279436
Effective search space used: 3176315279436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)