Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014912.1| heme oxygenase 1 [Bos taurus]. 491 e-139
Alignment gi|NP_001030259.2| heme oxygenase (decycling) 2 [Bos taurus]. 259 4e-69
>ref|NP_001014912.1| heme oxygenase 1 [Bos taurus].
Length = 289
Score = 491 bits (1264), Expect = e-139
Identities = 247/289 (85%), Positives = 266/289 (92%), Gaps = 1/289 (0%)
Frame = +1
Query: 301 MEHSQPNS-MPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYD 477
ME QP+S MPQDLSEALKEATKEVH QAENAEFMKNFQKGE+T+EGFKLVMASLYHIY
Sbjct: 1 MERPQPDSSMPQDLSEALKEATKEVHTQAENAEFMKNFQKGELTQEGFKLVMASLYHIYV 60
Query: 478 ALEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQ 657
ALEEEIE NKENPVYTPLYFPEELHRRA+LEQDMAFWYGPRWQEAIPYTQATKRYV+RLQ
Sbjct: 61 ALEEEIERNKENPVYTPLYFPEELHRRASLEQDMAFWYGPRWQEAIPYTQATKRYVQRLQ 120
Query: 658 QVGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFK 837
+VGR EPELLVAHAYTRY+GDLSGGQVLKKIAQKAL+LPSSGEGLAFFTFPN+A+ATKFK
Sbjct: 121 EVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALNLPSSGEGLAFFTFPNIASATKFK 180
Query: 838 QLYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDVRKR 1017
QLYRSRMNTLEMTPEV+QRVL+EAKTAFLLNIQLFEE+Q LLTQ KD P QA ++ +R
Sbjct: 181 QLYRSRMNTLEMTPEVRQRVLDEAKTAFLLNIQLFEELQGLLTQKAKDHDPLQAPELHRR 240
Query: 1018 AGSRVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
AGS+VQD P RGKPQ SVLSQ PL+RWVLTLSFLVATVA+GLYAM
Sbjct: 241 AGSKVQDLAPTKASRGKPQPSVLSQAPLLRWVLTLSFLVATVAVGLYAM 289
>ref|NP_001030259.2| heme oxygenase (decycling) 2 [Bos taurus].
Length = 334
Score = 259 bits (663), Expect = 4e-69
Identities = 129/247 (52%), Positives = 172/247 (69%), Gaps = 3/247 (1%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEEI+ NK++
Sbjct: 32 DLSELLKEGTKESHDRAENTQFVKDFLKGNIRKELFKLATTALYFTYSALEEEIDRNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM + YG W+E ++AT++YV R+ +VG+ EPELLVA
Sbjct: 92 PAFAPLYFPTELHRKKALIRDMEYLYGEHWEEQAQCSEATRKYVERIHEVGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE---LLTQDTKDQRPSQASDVRKRAGSRVQDST 1044
E K++++EEA AF N+Q+F E+ + LL ++T + + QD
Sbjct: 212 NLETKEKIVEEANKAFEFNMQVFNELDQAGSLLAKETLEDGLPAHDGLPAHGRLPTQDGL 271
Query: 1045 PVTTPRG 1065
PV +G
Sbjct: 272 PVHDGKG 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,111,357
Number of extensions: 1957247
Number of successful extensions: 10289
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10235
Number of HSP's successfully gapped: 2
Length of query: 599
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,107,870
Effective search space: 6926964170
Effective search space used: 6926964170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001181898.1| heme oxygenase 1 [Canis lupus familiaris]. 503 e-142
Alignment gi|XP_851743.1| PREDICTED: similar to Heme oxygenase 2 (HO-2) i... 256 5e-68
Alignment gi|XP_536989.1| PREDICTED: similar to Heme oxygenase 2 (HO-2) i... 248 1e-65
>ref|NP_001181898.1| heme oxygenase 1 [Canis lupus familiaris].
Length = 288
Score = 503 bits (1294), Expect = e-142
Identities = 244/288 (84%), Positives = 272/288 (94%)
Frame = +1
Query: 301 MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA 480
ME QP+SMPQDLSEALKEATKEVH QAENAEFMKNFQKG+VTR+GFKLVMASLYH+Y+A
Sbjct: 1 MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMKNFQKGQVTRKGFKLVMASLYHVYEA 60
Query: 481 LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ 660
LEEEIEHN+ENPVY PLYFPEELHR+AALE+DMAFWYGPRW EAIPYTQAT+RYV+RLQ+
Sbjct: 61 LEEEIEHNRENPVYAPLYFPEELHRKAALERDMAFWYGPRWHEAIPYTQATRRYVQRLQE 120
Query: 661 VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ 840
VGR EPELLVAHAYTRY+GDLSGGQVLKKIAQKALDLPSSGEG+ FFTFPN+A+ATKFKQ
Sbjct: 121 VGRREPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGVDFFTFPNIASATKFKQ 180
Query: 841 LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDVRKRA 1020
LYRSRMN+LEMTPEV+QRV+EEAKTAFLLNIQLFEE+QELL++DT+DQ PSQAS +R+R
Sbjct: 181 LYRSRMNSLEMTPEVRQRVIEEAKTAFLLNIQLFEELQELLSKDTEDQSPSQASGLRQRV 240
Query: 1021 GSRVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
GSR QDSTP TPRGKPQL++ SQ PL+RWVLTLSFLVATVA+GLY M
Sbjct: 241 GSRAQDSTPAETPRGKPQLNLPSQAPLLRWVLTLSFLVATVAVGLYVM 288
>ref|XP_851743.1| PREDICTED: similar to Heme oxygenase 2 (HO-2) isoform 2 [Canis
familiaris].
Length = 316
Score = 256 bits (654), Expect = 5e-68
Identities = 139/291 (47%), Positives = 190/291 (65%), Gaps = 14/291 (4%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIRKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + ++A ++YV R+ VG+ EPELLVA
Sbjct: 92 PAFAPLYFPTELHRKEALTKDMEYFFGEDWEEKVRCSEAAQKYVERIHYVGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE----LLTQDTKDQRP--SQASDVRK------- 1014
+ K+R++EEA AF N+Q+F+E+ + L + +D P DVRK
Sbjct: 212 NLKTKERIVEEANKAFEYNMQIFDELDQAGSLLAREILEDGVPVHDGKGDVRKCPYYAAK 271
Query: 1015 -RAGSRVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
G+ S P T L+VLSQ P ++++L + + Y M
Sbjct: 272 PDRGALEGSSCPFRT-----ALAVLSQ-PSLQFILAAGVALVASLLAWYYM 316
>ref|XP_536989.1| PREDICTED: similar to Heme oxygenase 2 (HO-2) isoform 1 [Canis
familiaris].
Length = 251
Score = 248 bits (633), Expect = 1e-65
Identities = 117/201 (58%), Positives = 154/201 (76%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIRKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + ++A ++YV R+ VG+ EPELLVA
Sbjct: 92 PAFAPLYFPTELHRKEALTKDMEYFFGEDWEEKVRCSEAAQKYVERIHYVGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQ 936
+ K+R++EEA AF N+Q
Sbjct: 212 NLKTKERIVEEANKAFEYNMQ 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,927,056
Number of extensions: 2005609
Number of successful extensions: 10936
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10886
Number of HSP's successfully gapped: 3
Length of query: 599
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 490
Effective length of database: 15,240,880
Effective search space: 7468031200
Effective search space used: 7468031200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002124.1| heme oxygenase 1 [Homo sapiens]. 486 e-137
Alignment gi|NP_001120678.1| heme oxygenase 2 [Homo sapiens]. 254 2e-67
Alignment gi|NP_001120677.1| heme oxygenase 2 [Homo sapiens]. 254 2e-67
Alignment gi|NP_001120676.1| heme oxygenase 2 [Homo sapiens]. 254 2e-67
Alignment gi|NP_002125.3| heme oxygenase 2 [Homo sapiens]. 254 2e-67
>ref|NP_002124.1| heme oxygenase 1 [Homo sapiens].
Length = 288
Score = 486 bits (1251), Expect = e-137
Identities = 238/288 (82%), Positives = 265/288 (92%)
Frame = +1
Query: 301 MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA 480
ME QP+SMPQDLSEALKEATKEVH QAENAEFM+NFQKG+VTR+GFKLVMASLYHIY A
Sbjct: 1 MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVA 60
Query: 481 LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ 660
LEEEIE NKE+PV+ P+YFPEELHR+AALEQD+AFWYGPRWQE IPYT A +RYV+RL +
Sbjct: 61 LEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHE 120
Query: 661 VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ 840
VGR EPELLVAHAYTRY+GDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPN+A+ATKFKQ
Sbjct: 121 VGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQ 180
Query: 841 LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDVRKRA 1020
LYRSRMN+LEMTP V+QRV+EEAKTAFLLNIQLFEE+QELLT DTKDQ PS+A +R+RA
Sbjct: 181 LYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRA 240
Query: 1021 GSRVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
++VQDS PV TPRGKP L+ SQ PL+RWVLTLSFLVATVA+GLYAM
Sbjct: 241 SNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM 288
>ref|NP_001120678.1| heme oxygenase 2 [Homo sapiens].
Length = 316
Score = 254 bits (648), Expect = 2e-67
Identities = 118/208 (56%), Positives = 158/208 (75%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + +A ++YV R+ +G+ EPELLVA
Sbjct: 92 PAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE 957
+ K+R++EEA AF N+Q+F E+ +
Sbjct: 212 NMKTKERIVEEANKAFEYNMQIFNELDQ 239
>ref|NP_001120677.1| heme oxygenase 2 [Homo sapiens].
Length = 316
Score = 254 bits (648), Expect = 2e-67
Identities = 118/208 (56%), Positives = 158/208 (75%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + +A ++YV R+ +G+ EPELLVA
Sbjct: 92 PAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE 957
+ K+R++EEA AF N+Q+F E+ +
Sbjct: 212 NMKTKERIVEEANKAFEYNMQIFNELDQ 239
>ref|NP_001120676.1| heme oxygenase 2 [Homo sapiens].
Length = 316
Score = 254 bits (648), Expect = 2e-67
Identities = 118/208 (56%), Positives = 158/208 (75%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + +A ++YV R+ +G+ EPELLVA
Sbjct: 92 PAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE 957
+ K+R++EEA AF N+Q+F E+ +
Sbjct: 212 NMKTKERIVEEANKAFEYNMQIFNELDQ 239
>ref|NP_002125.3| heme oxygenase 2 [Homo sapiens].
Length = 316
Score = 254 bits (648), Expect = 2e-67
Identities = 118/208 (56%), Positives = 158/208 (75%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AEN +F+K+F KG + +E FKL +LY Y ALEEE+E NK++
Sbjct: 32 DLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM +++G W+E + +A ++YV R+ +G+ EPELLVA
Sbjct: 92 PAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQLYR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE 957
+ K+R++EEA AF N+Q+F E+ +
Sbjct: 212 NMKTKERIVEEANKAFEYNMQIFNELDQ 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,290,928
Number of extensions: 1939399
Number of successful extensions: 10085
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10010
Number of HSP's successfully gapped: 5
Length of query: 599
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,737,052
Effective search space: 7235892532
Effective search space used: 7235892532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034572.1| heme oxygenase 1 [Mus musculus]. 462 e-130
Alignment gi|NP_001129538.1| heme oxygenase 2 [Mus musculus]. 252 8e-67
Alignment gi|NP_034573.2| heme oxygenase 2 [Mus musculus]. 252 8e-67
>ref|NP_034572.1| heme oxygenase 1 [Mus musculus].
Length = 289
Score = 462 bits (1189), Expect = e-130
Identities = 228/289 (78%), Positives = 256/289 (88%), Gaps = 1/289 (0%)
Frame = +1
Query: 301 MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA 480
ME QP+SMPQDLSEALKEATKEVH+QAENAEFMKNFQKG+V+REGFKLVMASLYHIY A
Sbjct: 1 MERPQPDSMPQDLSEALKEATKEVHIQAENAEFMKNFQKGQVSREGFKLVMASLYHIYTA 60
Query: 481 LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ 660
LEEEIE NK+NPVY PLYFPEELHRRAALEQDMAFWYGP WQE IP T AT+ YV+RL +
Sbjct: 61 LEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEIIPCTPATQHYVKRLHE 120
Query: 661 VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ 840
VGR PELLVAHAYTRY+GDLSGGQVLKKIAQKA+ LPSSGEGLAFFTFPN+ + TKFKQ
Sbjct: 121 VGRTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPNIDSPTKFKQ 180
Query: 841 LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDVRKRA 1020
LYR+RMNTLEMTPEVK RV EEAKTAFLLNI+LFEE+Q +LT++ KDQ PSQ + +R+R
Sbjct: 181 LYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQVMLTEEHKDQSPSQMASLRQRP 240
Query: 1021 GSRVQDSTPVTTPRGKPQLSV-LSQVPLVRWVLTLSFLVATVAMGLYAM 1164
S VQD+ P TPRGKPQ+S SQ PL++WVLTLSFL+ATVA+G+YAM
Sbjct: 241 ASLVQDTAPAETPRGKPQISTSSSQTPLLQWVLTLSFLLATVAVGIYAM 289
>ref|NP_001129538.1| heme oxygenase 2 [Mus musculus].
Length = 315
Score = 252 bits (643), Expect = 8e-67
Identities = 128/253 (50%), Positives = 178/253 (70%), Gaps = 15/253 (5%)
Frame = +1
Query: 301 MEHSQPNSMPQ---------DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVM 453
++ S+ NSM DLSE LKE TKE H +AEN +F+K+F KG + +E FKL
Sbjct: 11 VDESEKNSMAPEKENHTKMADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLAT 70
Query: 454 ASLYHIYDALEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQAT 633
+LY Y ALEEE++ NK++P + PLYFP ELHR+AAL +DM +++G W+E + ++A
Sbjct: 71 TALYFTYSALEEEMDRNKDHPAFAPLYFPTELHRKAALIKDMKYFFGENWEEQVKCSEAA 130
Query: 634 KRYVRRLQQVGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPN 813
++YV R+ VG+ EPELLVAHAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F +
Sbjct: 131 QKYVDRIHYVGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFEH 190
Query: 814 VANATKFKQLYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQE---LLTQDT-KD 981
V NA +FKQ YR+RMN L++ + K+R++EEA AF N+Q+F E+ + +L ++T +D
Sbjct: 191 VDNAQQFKQFYRARMNALDLNLKTKERIVEEANKAFEYNMQIFSELDQAGSMLARETLED 250
Query: 982 QRP--SQASDVRK 1014
P D+RK
Sbjct: 251 GLPVHDGKGDIRK 263
>ref|NP_034573.2| heme oxygenase 2 [Mus musculus].
Length = 315
Score = 252 bits (643), Expect = 8e-67
Identities = 128/253 (50%), Positives = 178/253 (70%), Gaps = 15/253 (5%)
Frame = +1
Query: 301 MEHSQPNSMPQ---------DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVM 453
++ S+ NSM DLSE LKE TKE H +AEN +F+K+F KG + +E FKL
Sbjct: 11 VDESEKNSMAPEKENHTKMADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLAT 70
Query: 454 ASLYHIYDALEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQAT 633
+LY Y ALEEE++ NK++P + PLYFP ELHR+AAL +DM +++G W+E + ++A
Sbjct: 71 TALYFTYSALEEEMDRNKDHPAFAPLYFPTELHRKAALIKDMKYFFGENWEEQVKCSEAA 130
Query: 634 KRYVRRLQQVGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPN 813
++YV R+ VG+ EPELLVAHAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F +
Sbjct: 131 QKYVDRIHYVGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFEH 190
Query: 814 VANATKFKQLYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQE---LLTQDT-KD 981
V NA +FKQ YR+RMN L++ + K+R++EEA AF N+Q+F E+ + +L ++T +D
Sbjct: 191 VDNAQQFKQFYRARMNALDLNLKTKERIVEEANKAFEYNMQIFSELDQAGSMLARETLED 250
Query: 982 QRP--SQASDVRK 1014
P D+RK
Sbjct: 251 GLPVHDGKGDIRK 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,233,979
Number of extensions: 1599674
Number of successful extensions: 7866
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7833
Number of HSP's successfully gapped: 3
Length of query: 599
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 492
Effective length of database: 12,403,707
Effective search space: 6102623844
Effective search space used: 6102623844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004027.1| heme oxygenase 1 [Sus scrofa]. 572 e-163
Alignment gi|XP_003124683.1| PREDICTED: heme oxygenase 2 [Sus scrofa]. 256 3e-68
>ref|NP_001004027.1| heme oxygenase 1 [Sus scrofa].
Length = 288
Score = 572 bits (1473), Expect = e-163
Identities = 286/288 (99%), Positives = 288/288 (100%)
Frame = +1
Query: 301 MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA 480
MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA
Sbjct: 1 MEHSQPNSMPQDLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDA 60
Query: 481 LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ 660
LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ
Sbjct: 61 LEEEIEHNKENPVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQ 120
Query: 661 VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ 840
VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ
Sbjct: 121 VGRFEPELLVAHAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQ 180
Query: 841 LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDVRKRA 1020
LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASD+RKRA
Sbjct: 181 LYRSRMNTLEMTPEVKQRVLEEAKTAFLLNIQLFEEVQELLTQDTKDQRPSQASDIRKRA 240
Query: 1021 GSRVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
GSRVQDSTPVTTPRGKPQLSVLSQVPL+RWVLTLSFLVATVAMGLYAM
Sbjct: 241 GSRVQDSTPVTTPRGKPQLSVLSQVPLIRWVLTLSFLVATVAMGLYAM 288
>ref|XP_003124683.1| PREDICTED: heme oxygenase 2 [Sus scrofa].
Length = 316
Score = 256 bits (654), Expect = 3e-68
Identities = 138/286 (48%), Positives = 195/286 (68%), Gaps = 9/286 (3%)
Frame = +1
Query: 334 DLSEALKEATKEVHVQAENAEFMKNFQKGEVTREGFKLVMASLYHIYDALEEEIEHNKEN 513
DLSE LKE TKE H +AE+ +F+K+F KG + +E FKL +LY Y ALEEE++ NK++
Sbjct: 32 DLSELLKEGTKEAHDRAESTQFVKDFLKGNIRKELFKLATTALYFTYSALEEEMDRNKDH 91
Query: 514 PVYTPLYFPEELHRRAALEQDMAFWYGPRWQEAIPYTQATKRYVRRLQQVGRFEPELLVA 693
P + PLYFP ELHR+ AL +DM ++YG W+E ++AT++YV R+ VG+ EPELLVA
Sbjct: 92 PAFAPLYFPTELHRKEALVKDMEYFYGGDWEEQAQCSEATRKYVERIHYVGQNEPELLVA 151
Query: 694 HAYTRYMGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNVANATKFKQLYRSRMNTLEM 873
HAYTRYMGDLSGGQVLKK+AQ+AL LPS+GEG F+ F NV NA +FKQ YR+RMN L++
Sbjct: 152 HAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQFYRARMNALDL 211
Query: 874 TPEVKQRVLEEAKTAFLLNIQLFEEVQE---LLTQDT-KDQRP--SQASDVRK---RAGS 1026
E K++++EEA AF N+Q+F E+ + LL ++T D P DVRK +G
Sbjct: 212 NLETKEKIVEEANKAFEYNMQVFNELDQAGSLLAKETLADGLPVHDGKGDVRKCPYYSGE 271
Query: 1027 RVQDSTPVTTPRGKPQLSVLSQVPLVRWVLTLSFLVATVAMGLYAM 1164
+ + + ++ + L+VLS+ P ++++L S +A + Y M
Sbjct: 272 QDKGALEGSSCPFQTALAVLSK-PSLQFLLAASVALAASLLAWYYM 316
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,188,980
Number of extensions: 1287250
Number of successful extensions: 7030
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6960
Number of HSP's successfully gapped: 2
Length of query: 599
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 494
Effective length of database: 8,729,747
Effective search space: 4312495018
Effective search space used: 4312495018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002531
(1798 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894747.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1322 0.0
Sscrofa_Chr03 101 1e-18
>gb|GL894747.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3381
Length = 17340
Score = 1322 bits (667), Expect = 0.0
Identities = 679/683 (99%)
Strand = Plus / Minus
Query: 1096 ccgctcgtccgatgggtcctgacactcagctttctggtggcaacggtcgccatggggctt 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3617 ccgctcgtccgatgggtcctgacactcagctttctggtggcaacggtcgccatggggctt 3558
Query: 1156 tatgccatgtgaatgcaaccctgtgaatgcaaccgtgctggctcctgggggccgtgaact 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3557 tatgccatgtgaatgcaaccctgtgaatgcaaccgtgctggctcctgggggccgtgaact 3498
Query: 1216 ctgcctggagagggatggtctcttgactggcttccttgttgggcatgtgggggtcggggg 1275
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 3497 ctgcctggagagggatggtctcttgactggcttccttgttgggcatttgggggtctgggg 3438
Query: 1276 aggctctgagggcccctgccctctccctgcgtccctccctctcgctggaaaaaaggagtc 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 aggctctgagggcccctgccctctccctgcgtccctccctctcgctggaaaaaaggagtc 3378
Query: 1336 tgtggcatctttcccaaccaagagcacatgcagccagtgccctgaacttcagagagggac 1395
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3377 tgtggcatctttcccaaccaagagcacgtgcagccagtgccctgaacttcagagagggac 3318
Query: 1396 aaggggtccagcatggccccctcgcaccctccccgtcccgttcctgcagcagagcccaga 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 aaggggtccagcatggccccctcgcaccctccccgtcccgttcctgcagcagagcccaga 3258
Query: 1456 gaatggagccagccagaagccgcagctgtttctgagcctccaaacaccgcgggtccgcgg 1515
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 gaatggaggcagccagaagccgcagctgtttctgagcctccaaacaccgcgggtccgcgg 3198
Query: 1516 tctcccttttgacgtgccttgactgccttcctgtgggccgtggcaatttttatagaactg 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 tctcccttttgacgtgccttgactgccttcctgtgggccgtggcaatttttatagaactg 3138
Query: 1576 tgcaaagatgttgtgtctcgtgtttccgtcttgtttttgttggagccactcttcgttcct 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 tgcaaagatgttgtgtctcgtgtttccgtcttgtttttgttggagccactcttcgttcct 3078
Query: 1636 ggctcagcctgaactgtggtattttgttgtgttctgtttttatagcaaggtggggtgagg 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 ggctcagcctgaactgtggtattttgttgtgttctgtttttatagcaaggtggggtgagg 3018
Query: 1696 ggtggggagggagctgttttaacagcactgtggccttggtcactaacttttatgtgaagt 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 ggtggggagggagctgttttaacagcactgtggccttggtcactaacttttatgtgaagt 2958
Query: 1756 aataaagtacatggcctgatagt 1778
|||||||||||||||||||||||
Sbjct: 2957 aataaagtacatggcctgatagt 2935
Score = 801 bits (404), Expect = 0.0
Identities = 407/408 (99%)
Strand = Plus / Minus
Query: 529 ctctacttcccggaagagctgcaccgccgggccgccctggagcaggacatggccttctgg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6522 ctctacttcccggaagagctgcaccgccgggccgccctggagcaggacatggccttctgg 6463
Query: 589 tatgggccccgctggcaggaggccatcccctacacgcaggccaccaagcgctacgtgcgg 648
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6462 tatgggccccgctggcaggaggccatcccctccacgcaggccaccaagcgctacgtgcgg 6403
Query: 649 cgactgcagcaggtggggcgcttcgagcccgagctgctggtggcccacgcctacacccgc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6402 cgactgcagcaggtggggcgcttcgagcccgagctgctggtggcccacgcctacacccgc 6343
Query: 709 tacatgggtgacctgtctgggggccaggtcctcaagaagatcgctcagaaggccctggac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 tacatgggtgacctgtctgggggccaggtcctcaagaagatcgctcagaaggccctggac 6283
Query: 769 ctgcccagctccggggagggcctggccttcttcactttccccaatgtcgccaacgccacc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6282 ctgcccagctccggggagggcctggccttcttcactttccccaatgtcgccaacgccacc 6223
Query: 829 aagttcaagcagctgtaccgctcccgaatgaacactctggagatgacccccgaggtcaag 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222 aagttcaagcagctgtaccgctcccgaatgaacactctggagatgacccccgaggtcaag 6163
Query: 889 cagagggtcctcgaagaagccaagaccgccttcctgctcaacattcag 936
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6162 cagagggtcctcgaagaagccaagaccgccttcctgctcaacattcag 6115
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 324 catgccccaggatttgtcagaggccctgaaggaggccaccaaggaggtgcacgtccaggc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9575 catgccccaggatttgtcagaggccctgaaggaggccaccaaggaggtgcacgtccaggc 9516
Query: 384 tgagaatgccgagttcatgaagaactttcagaagggcgaggtcacccgagaaggctttaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9515 tgagaatgccgagttcatgaagaactttcagaagggcgaggtcacccgagaaggctttaa 9456
Query: 444 g 444
|
Sbjct: 9455 g 9455
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 443 agctggtgatggcgtccttgtaccacatctacgatgccctggaggagga 491
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6671 agctggtgatggcgtccttgtaccacatctacgatgccctggaggagga 6623
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 934 cagctgtttgaggaggtgcaggagctgctgacccaggacactaag 978
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4570 cagctgtttgaggaggtgcaggagctgctgacccaggacactaag 4526
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1035 agactccactcccgtgacaacccccagggggaagccgca 1073
|||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 agactccactcccgtgacaacccccagggggaagccgca 3718
>Sscrofa_Chr03
|| Length = 144787322
Score = 101 bits (51), Expect = 1e-18
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 673 gagcccgagctgctggtggcccacgcctacacccgctacatgggtgacctgtctgggggc 732
||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 38897203 gagccagagctgctggtggcccacgcctacacccgctacatgggggacctctcggggggc 38897144
Query: 733 caggtcctcaagaag 747
||||| || ||||||
Sbjct: 38897143 caggtgctgaagaag 38897129
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,659,544
Number of extensions: 716
Number of successful extensions: 716
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 7
Length of query: 1798
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1776
Effective length of database: 2,808,408,574
Effective search space: 4987733627424
Effective search space used: 4987733627424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)