Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039380.1| vesicle-associated membrane protein 3 [Bos t... 145 8e-35
Alignment gi|NP_001069098.2| vesicle-associated membrane protein 1 [Bos t... 130 2e-30
Alignment gi|NP_776908.1| vesicle-associated membrane protein 2 [Bos taur... 130 3e-30
Alignment gi|NP_001069906.1| vesicle-associated membrane protein 4 [Bos t... 74 2e-13
Alignment gi|NP_001029462.1| vesicle-associated membrane protein 8 [Bos t... 59 1e-08
Alignment gi|NP_001039941.1| vesicle-associated membrane protein 5 [Bos t... 58 2e-08
>ref|NP_001039380.1| vesicle-associated membrane protein 3 [Bos taurus].
Length = 104
Score = 145 bits (365), Expect = 8e-35
Identities = 72/89 (80%), Positives = 74/89 (83%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
+RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 16 SRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 75
Query: 337 WWKNCKMWAXXXXXXXXXXXXXXXWSVSS 423
WWKNCKMWA WS+SS
Sbjct: 76 WWKNCKMWAIGITVVVIIIIIIVVWSISS 104
>ref|NP_001069098.2| vesicle-associated membrane protein 1 [Bos taurus].
Length = 118
Score = 130 bits (328), Expect = 2e-30
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_776908.1| vesicle-associated membrane protein 2 [Bos taurus].
Length = 116
Score = 130 bits (326), Expect = 3e-30
Identities = 65/67 (97%), Positives = 65/67 (97%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 89 WWKNLKM 95
>ref|NP_001069906.1| vesicle-associated membrane protein 4 [Bos taurus].
Length = 141
Score = 73.9 bits (180), Expect = 2e-13
Identities = 29/69 (42%), Positives = 50/69 (72%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N +++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+
Sbjct: 50 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 109
Query: 337 WWKNCKMWA 363
WW+ CK+ A
Sbjct: 110 WWRGCKIKA 118
>ref|NP_001029462.1| vesicle-associated membrane protein 8 [Bos taurus].
Length = 100
Score = 58.5 bits (140), Expect = 1e-08
Identities = 24/65 (36%), Positives = 45/65 (69%)
Frame = +1
Query: 163 RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 342
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 11 RVRNLRDEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 70
Query: 343 KNCKM 357
KN KM
Sbjct: 71 KNVKM 75
>ref|NP_001039941.1| vesicle-associated membrane protein 5 [Bos taurus].
Length = 116
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L++ Q Q DEV +IM N DKVLERD KL+EL+ R+D L +S F + L +K
Sbjct: 4 KELERCQRQADEVTEIMLNNFDKVLERDGKLAELEQRSDQLLDMSSAFSKTTKTLAQKKR 63
Query: 340 WKNCK 354
W+N +
Sbjct: 64 WENAR 68
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,084,208
Number of extensions: 995755
Number of successful extensions: 3108
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3104
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536630.2| PREDICTED: similar to Vesicle-associated membra... 134 2e-31
Alignment gi|XP_543853.2| PREDICTED: similar to Vesicle-associated membra... 122 6e-28
Alignment gi|XP_537195.1| PREDICTED: similar to Vesicle-associated membra... 72 7e-13
Alignment gi|XP_852312.1| PREDICTED: similar to vesicle-associated membra... 62 1e-09
Alignment gi|XP_539938.2| PREDICTED: similar to Vesicle-associated membra... 56 6e-08
Alignment gi|XP_865468.1| PREDICTED: similar to vesicle-associated membra... 50 3e-06
>ref|XP_536630.2| PREDICTED: similar to Vesicle-associated membrane protein 2
(VAMP-2) (Synaptobrevin 2) [Canis familiaris].
Length = 203
Score = 134 bits (336), Expect = 2e-31
Identities = 74/104 (71%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +1
Query: 52 PASGPAAPLRRFSPAVA--AAEMSTXXXXXXXXXXXXNRRLQQTQNQVDEVVDIMRVNVD 225
P+ PAAP + A A AA NRRLQQTQ QVDEVVDIMRVNVD
Sbjct: 79 PSRPPAAPAMSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVD 138
Query: 226 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 357
KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKN KM
Sbjct: 139 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 182
>ref|XP_543853.2| PREDICTED: similar to Vesicle-associated membrane protein 1
(VAMP-1) (Synaptobrevin 1) [Canis familiaris].
Length = 126
Score = 122 bits (306), Expect = 6e-28
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDIMRVNVDKVL+RD+ LS+LDDRADALQ GASQFE+SAAKLKRKY
Sbjct: 39 NRRLQQTQAQVEEVVDIMRVNVDKVLKRDEILSQLDDRADALQVGASQFESSAAKLKRKY 98
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 99 WWKNCKM 105
>ref|XP_537195.1| PREDICTED: similar to Vesicle-associated membrane protein 4
(VAMP-4) [Canis familiaris].
Length = 141
Score = 72.4 bits (176), Expect = 7e-13
Identities = 28/67 (41%), Positives = 49/67 (73%)
Frame = +1
Query: 163 RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 342
+++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+ WW
Sbjct: 52 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
Query: 343 KNCKMWA 363
+ CK+ A
Sbjct: 112 RGCKIKA 118
>ref|XP_852312.1| PREDICTED: similar to vesicle-associated membrane protein 8 isoform
2 [Canis familiaris].
Length = 101
Score = 61.6 bits (148), Expect = 1e-09
Identities = 26/67 (38%), Positives = 46/67 (68%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+
Sbjct: 10 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKF 69
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 70 WWKNVKM 76
>ref|XP_539938.2| PREDICTED: similar to Vesicle-associated membrane protein 5
(VAMP-5) (Myobrevin) [Canis familiaris].
Length = 116
Score = 56.2 bits (134), Expect = 6e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L++ Q Q DEV +IM N DKVLERD KL+EL+ R+D L +S F + L +K
Sbjct: 4 KELERCQRQADEVTEIMLNNFDKVLERDGKLAELELRSDQLLDMSSAFSKTTKNLAQKKR 63
Query: 340 WKNCK 354
W+N +
Sbjct: 64 WENVR 68
>ref|XP_865468.1| PREDICTED: similar to vesicle-associated membrane protein 8 isoform
3 [Canis familiaris].
Length = 75
Score = 50.4 bits (119), Expect = 3e-06
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +1
Query: 208 MRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 357
M NV+++L R + L L ++ + L+A + F+T++ K+ RK+WWKN KM
Sbjct: 1 MTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVKM 50
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,357,339
Number of extensions: 948499
Number of successful extensions: 3119
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3117
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004772.1| vesicle-associated membrane protein 3 [Homo sap... 145 9e-35
Alignment gi|NP_055047.2| vesicle-associated membrane protein 2 [Homo sap... 130 3e-30
Alignment gi|NP_954740.1| vesicle-associated membrane protein 1 isoform 2... 129 5e-30
Alignment gi|NP_055046.1| vesicle-associated membrane protein 1 isoform 1... 129 5e-30
Alignment gi|NP_058439.1| vesicle-associated membrane protein 1 isoform 3... 129 5e-30
Alignment gi|NP_001172056.1| vesicle-associated membrane protein 4 isofor... 74 2e-13
Alignment gi|NP_003753.2| vesicle-associated membrane protein 4 isoform 1... 74 2e-13
Alignment gi|NP_003752.2| vesicle-associated membrane protein 8 [Homo sap... 62 1e-09
Alignment gi|NP_006625.1| vesicle-associated membrane protein 5 [Homo sap... 52 1e-06
>ref|NP_004772.1| vesicle-associated membrane protein 3 [Homo sapiens].
Length = 100
Score = 145 bits (365), Expect = 9e-35
Identities = 73/89 (82%), Positives = 73/89 (82%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 12 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 71
Query: 337 WWKNCKMWAXXXXXXXXXXXXXXXWSVSS 423
WWKNCKMWA W VSS
Sbjct: 72 WWKNCKMWAIGITVLVIFIIIIIVWVVSS 100
>ref|NP_055047.2| vesicle-associated membrane protein 2 [Homo sapiens].
Length = 116
Score = 130 bits (326), Expect = 3e-30
Identities = 65/67 (97%), Positives = 65/67 (97%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 89 WWKNLKM 95
>ref|NP_954740.1| vesicle-associated membrane protein 1 isoform 2 [Homo sapiens].
Length = 117
Score = 129 bits (324), Expect = 5e-30
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_055046.1| vesicle-associated membrane protein 1 isoform 1 [Homo sapiens].
Length = 118
Score = 129 bits (324), Expect = 5e-30
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_058439.1| vesicle-associated membrane protein 1 isoform 3 [Homo sapiens].
Length = 116
Score = 129 bits (324), Expect = 5e-30
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_001172056.1| vesicle-associated membrane protein 4 isoform 2 [Homo sapiens].
Length = 140
Score = 73.9 bits (180), Expect = 2e-13
Identities = 29/69 (42%), Positives = 50/69 (72%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N +++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+
Sbjct: 49 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 108
Query: 337 WWKNCKMWA 363
WW+ CK+ A
Sbjct: 109 WWRGCKIKA 117
>ref|NP_003753.2| vesicle-associated membrane protein 4 isoform 1 [Homo sapiens].
Length = 141
Score = 73.9 bits (180), Expect = 2e-13
Identities = 29/69 (42%), Positives = 50/69 (72%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N +++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+
Sbjct: 50 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 109
Query: 337 WWKNCKMWA 363
WW+ CK+ A
Sbjct: 110 WWRGCKIKA 118
>ref|NP_003752.2| vesicle-associated membrane protein 8 [Homo sapiens].
Length = 100
Score = 61.6 bits (148), Expect = 1e-09
Identities = 26/67 (38%), Positives = 46/67 (68%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+
Sbjct: 10 NDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKF 69
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 70 WWKNVKM 76
>ref|NP_006625.1| vesicle-associated membrane protein 5 [Homo sapiens].
Length = 116
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +1
Query: 166 LQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 345
L++ Q Q +EV +IMR N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
Query: 346 NCK 354
N +
Sbjct: 66 NIR 68
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,500,211
Number of extensions: 923927
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3006
Number of HSP's successfully gapped: 9
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033524.1| vesicle-associated membrane protein 3 [Mus musc... 144 1e-34
Alignment gi|NP_001074026.1| vesicle-associated membrane protein 1 isofor... 130 1e-30
Alignment gi|NP_033522.1| vesicle-associated membrane protein 1 isoform a... 130 1e-30
Alignment gi|NP_033523.1| vesicle-associated membrane protein 2 [Mus musc... 130 2e-30
Alignment gi|NP_058076.2| vesicle-associated membrane protein 4 [Mus musc... 74 2e-13
Alignment gi|NP_058074.2| vesicle-associated membrane protein 8 [Mus musc... 62 1e-09
Alignment gi|NP_001074211.1| vesicle-associated membrane protein 5 [Mus m... 54 2e-07
Alignment gi|NP_058568.1| vesicle-associated membrane protein 5 [Mus musc... 54 2e-07
>ref|NP_033524.1| vesicle-associated membrane protein 3 [Mus musculus].
Length = 103
Score = 144 bits (364), Expect = 1e-34
Identities = 75/103 (72%), Positives = 75/103 (72%)
Frame = +1
Query: 112 MSTXXXXXXXXXXXXNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 291
MST NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG
Sbjct: 1 MSTGVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 60
Query: 292 ASQFETSAAKLKRKYWWKNCKMWAXXXXXXXXXXXXXXXWSVS 420
ASQFETSAAKLKRKYWWKNCKMWA W VS
Sbjct: 61 ASQFETSAAKLKRKYWWKNCKMWAIGISVLVIIVIIIIVWCVS 103
>ref|NP_001074026.1| vesicle-associated membrane protein 1 isoform b [Mus musculus].
Length = 117
Score = 130 bits (328), Expect = 1e-30
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_033522.1| vesicle-associated membrane protein 1 isoform a [Mus musculus].
Length = 118
Score = 130 bits (328), Expect = 1e-30
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|NP_033523.1| vesicle-associated membrane protein 2 [Mus musculus].
Length = 116
Score = 130 bits (326), Expect = 2e-30
Identities = 65/67 (97%), Positives = 65/67 (97%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 89 WWKNLKM 95
>ref|NP_058076.2| vesicle-associated membrane protein 4 [Mus musculus].
Length = 141
Score = 73.9 bits (180), Expect = 2e-13
Identities = 29/69 (42%), Positives = 50/69 (72%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N +++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+
Sbjct: 50 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 109
Query: 337 WWKNCKMWA 363
WW+ CK+ A
Sbjct: 110 WWRGCKIKA 118
>ref|NP_058074.2| vesicle-associated membrane protein 8 [Mus musculus].
Length = 101
Score = 61.6 bits (148), Expect = 1e-09
Identities = 26/67 (38%), Positives = 46/67 (68%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+
Sbjct: 10 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKF 69
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 70 WWKNVKM 76
>ref|NP_001074211.1| vesicle-associated membrane protein 5 [Mus musculus].
Length = 102
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L+Q Q Q DEV +IM N DKVLER KL+EL+ R+D L +S F + L ++
Sbjct: 4 KELKQCQQQADEVTEIMLNNFDKVLERHGKLAELEQRSDQLLDMSSAFSKTTKTLAQQKR 63
Query: 340 WKNCK 354
W+N +
Sbjct: 64 WENIR 68
>ref|NP_058568.1| vesicle-associated membrane protein 5 [Mus musculus].
Length = 102
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L+Q Q Q DEV +IM N DKVLER KL+EL+ R+D L +S F + L ++
Sbjct: 4 KELKQCQQQADEVTEIMLNNFDKVLERHGKLAELEQRSDQLLDMSSAFSKTTKTLAQQKR 63
Query: 340 WKNCK 354
W+N +
Sbjct: 64 WENIR 68
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,742,263
Number of extensions: 788082
Number of successful extensions: 2614
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2607
Number of HSP's successfully gapped: 8
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362002.1| PREDICTED: hypothetical protein LOC100628225... 149 4e-36
Alignment gi|XP_003358329.1| PREDICTED: vesicle-associated membrane prote... 130 2e-30
Alignment gi|XP_003126593.1| PREDICTED: vesicle-associated membrane prote... 129 3e-30
Alignment gi|XP_003357579.1| PREDICTED: vesicle-associated membrane prote... 74 1e-13
Alignment gi|XP_003354791.1| PREDICTED: vesicle-associated membrane prote... 59 6e-09
Alignment gi|XP_003125015.1| PREDICTED: vesicle-associated membrane prote... 57 1e-08
Alignment gi|XP_003354789.1| PREDICTED: vesicle-associated membrane prote... 57 1e-08
>ref|XP_003362002.1| PREDICTED: hypothetical protein LOC100628225, partial [Sus scrofa].
Length = 210
Score = 149 bits (375), Expect = 4e-36
Identities = 81/126 (64%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Frame = +1
Query: 55 ASGPAAPLRRFSPA---VAAAEMSTXXXXXXXXXXXXNRRLQQTQNQVDEVVDIMRVNVD 225
+ G P R P+ + A ST NRRLQQTQNQVDEVVDIMRVNVD
Sbjct: 85 SQGFCLPRARILPSDNLIKLARRSTGAPAGSSAAAGSNRRLQQTQNQVDEVVDIMRVNVD 144
Query: 226 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAXXXXXXXXXXXXXX 405
KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWA
Sbjct: 145 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGISVVVIIVIIII 204
Query: 406 XWSVSS 423
WSVSS
Sbjct: 205 VWSVSS 210
>ref|XP_003358329.1| PREDICTED: vesicle-associated membrane protein 2-like [Sus scrofa].
Length = 116
Score = 130 bits (326), Expect = 2e-30
Identities = 65/67 (97%), Positives = 65/67 (97%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY
Sbjct: 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88
Query: 337 WWKNCKM 357
WWKN KM
Sbjct: 89 WWKNLKM 95
>ref|XP_003126593.1| PREDICTED: vesicle-associated membrane protein 1-like [Sus scrofa].
Length = 118
Score = 129 bits (324), Expect = 3e-30
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
NRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+SAAKLKRKY
Sbjct: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
Query: 337 WWKNCKM 357
WWKNCKM
Sbjct: 91 WWKNCKM 97
>ref|XP_003357579.1| PREDICTED: vesicle-associated membrane protein 4-like isoform 2
[Sus scrofa].
Length = 141
Score = 73.9 bits (180), Expect = 1e-13
Identities = 29/69 (42%), Positives = 50/69 (72%)
Frame = +1
Query: 157 NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 336
N +++ QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L A+ F + +L+R+
Sbjct: 50 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 109
Query: 337 WWKNCKMWA 363
WW+ CK+ A
Sbjct: 110 WWRGCKIKA 118
>ref|XP_003354791.1| PREDICTED: vesicle-associated membrane protein 8-like [Sus scrofa].
Length = 100
Score = 58.5 bits (140), Expect = 6e-09
Identities = 24/65 (36%), Positives = 45/65 (69%)
Frame = +1
Query: 163 RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 342
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 12 RVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 71
Query: 343 KNCKM 357
KN KM
Sbjct: 72 KNVKM 76
>ref|XP_003125015.1| PREDICTED: vesicle-associated membrane protein 5-like [Sus scrofa].
Length = 129
Score = 57.4 bits (137), Expect = 1e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L++ Q Q DEV +IM N DKVLERD KL+EL+ R+D L +S F + L +K
Sbjct: 17 KELERCQRQADEVTEIMLNNFDKVLERDGKLAELEQRSDQLLDMSSAFSKTTKTLAQKKR 76
Query: 340 WKNCK 354
W+N +
Sbjct: 77 WENLR 81
>ref|XP_003354789.1| PREDICTED: vesicle-associated membrane protein 5-like [Sus scrofa].
Length = 116
Score = 57.4 bits (137), Expect = 1e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 160 RRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 339
+ L++ Q Q DEV +IM N DKVLERD KL+EL+ R+D L +S F + L +K
Sbjct: 4 KELERCQRQADEVTEIMLNNFDKVLERDGKLAELEQRSDQLLDMSSAFSKTTKTLAQKKR 63
Query: 340 WKNCK 354
W+N +
Sbjct: 64 WENLR 68
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,258,938
Number of extensions: 749527
Number of successful extensions: 1890
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1890
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002534
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896192.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 757 0.0
Sscrofa_Chr12 117 1e-23
Sscrofa_Chr05 98 1e-17
>gb|GL896192.1| Sus scrofa unplaced genomic scaffold chrU_scaffold557
Length = 30735
Score = 757 bits (382), Expect = 0.0
Identities = 437/454 (96%), Gaps = 1/454 (0%)
Strand = Plus / Plus
Query: 676 tcttaggttccagagccgtgatgcccgaagaagtgtcgtctggtgagcggccgttgaccc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27666 tcttaggttccagagccgtgatgcccgaagaagtgtcgtctggtgagcggccgttgaccc 27725
Query: 736 cttagggaaatctgttcccagctcactgctgtcctgtgccgtcagcccctgtctacgcct 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27726 cttagggaaatctgttcccagctcactgctgtcctgtgccgtcagcccctgtctacgcct 27785
Query: 796 ccgggtcatcggattccccagagtgccttccagaaagaacactactgcctgacacacatc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27786 ccgggtcatcggattccccagagtgccttccagaaagaacactactgcctgacacacatc 27845
Query: 856 tgtgataataacaggccgtgccttattttgctctttttctgattccctgttaaagaaccc 915
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 27846 tgtgataataacaggccgtgccttattttgctctttttctgattccctgtcaaagaaccc 27905
Query: 916 gccacttgttataaacactactgactcttttgctgta-ttaaaataagatgctggcgaag 974
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27906 gccactgtttataaacactactgactcttttgctgtatttaaaataagatgctggcgaag 27965
Query: 975 cgtttttgctcttacatggggtatgaagcttgttacttttcccgtactgttatgtatccc 1034
|||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 27966 cgtttttgctcttacatggggtatgaagctgtttactttctcgttactgttatgtatccc 28025
Query: 1035 ttgctaaaaatattgttttaacggaggaattaatacctctctaaagcatttttacagacc 1094
|||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 28026 ttgctaaaaatattgttttaacggagaaataataacctctctaaagcatttttacagacc 28085
Query: 1095 tgtggctgtgaccaaagttttctttttgccaaaa 1128
|||||||||||||||||||| |||||||||||
Sbjct: 28086 tgtggctgtgaccaaagtttctcttttgccaaaa 28119
Score = 474 bits (239), Expect = e-131
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 409 tggagtgtttcttcctgaagaaccagcgaacctccagcctgctgttcaacagacctcctc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27323 tggagtgtttcttcctgaagaaccagcgaacctccagcctgctgttcaacagacctcctc 27382
Query: 469 aagacttttgacgtcgaccctgctctcgtatcaagcttacctactgttctatctaaaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27383 aagacttttgacgtcgaccctgctctcgtatcaagcttacctactgttctatctaaaatg 27442
Query: 529 attagttcctgtttgttactgtaaagtttgttttctaggaaatgtgcctttgttttgtaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27443 attagttcctgtttgttactgtaaagtttgttttctaggaaatgtgcctttgttttgtaa 27502
Query: 589 tctgcactccaaactcaaagagtggtctgcccggcccccgttttgcctggtgcctgttca 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 27503 tctgcactccaaactcaaagagtggtctgcccggcccccgttttgcctggtgcctgttta 27562
Query: 649 gat 651
|||
Sbjct: 27563 gat 27565
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 194 aggtggtggatatcatgagagtcaacgtggataaggtgctggaacgggaccagaagctct 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25144 aggtggtggatatcatgagagtcaacgtggataaggtgctggaacgggaccagaagctct 25203
Query: 254 ctgagctggatgaccgagcagatgcgctgcaggcgggagcctcccaatttgaaacaagtg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25204 ctgagctggatgaccgagcagatgcgctgcaggcgggagcctcccaatttgaaacaagtg 25263
Query: 314 ctgccaagttgaagagaaaatattggtggaagaactgcaag 354
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 25264 ctgccaagttgaagagaaaatattggtggaagaactgcaag 25304
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 114 gtcgacaggtgcgcctgcaggttccagcgctgccgctggcagcaacagaagacttcagca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22918 gtcgacaggtgcgcctgcaggttccagcgctgccgctggcagcaacagaagacttcagca 22977
Query: 174 gacacaaaatcaagtggacgaggt 197
||||||||||||||||||||||||
Sbjct: 22978 gacacaaaatcaagtggacgaggt 23001
>Sscrofa_Chr12
|| Length = 63588571
Score = 117 bits (59), Expect = 1e-23
Identities = 128/151 (84%)
Strand = Plus / Minus
Query: 194 aggtggtggatatcatgagagtcaacgtggataaggtgctggaacgggaccagaagctct 253
|||||||||| || ||||| || |||||||| ||||| ||||| |||||||||||||| |
Sbjct: 55856223 aggtggtggacattatgagggtgaacgtggacaaggtcctggagcgggaccagaagctgt 55856164
Query: 254 ctgagctggatgaccgagcagatgcgctgcaggcgggagcctcccaatttgaaacaagtg 313
| || ||||| ||||| || || || || |||||||| |||||||| |||||||||||||
Sbjct: 55856163 cggaactggacgaccgcgccgacgcactccaggcgggggcctcccagtttgaaacaagtg 55856104
Query: 314 ctgccaagttgaagagaaaatattggtggaa 344
| |||||| | ||| | ||||||||||||||
Sbjct: 55856103 cagccaagctcaagcgcaaatattggtggaa 55856073
>Sscrofa_Chr05
|| Length = 111506441
Score = 97.6 bits (49), Expect = 1e-17
Identities = 133/161 (82%)
Strand = Plus / Plus
Query: 194 aggtggtggatatcatgagagtcaacgtggataaggtgctggaacgggaccagaagctct 253
|||||||||| ||||| | || || ||||||||||| || || ||||||||||||| |
Sbjct: 66646403 aggtggtggacatcattcgtgtgaatgtggataaggtcctagagagggaccagaagctgt 66646462
Query: 254 ctgagctggatgaccgagcagatgcgctgcaggcgggagcctcccaatttgaaacaagtg 313
| ||||||||||||||||| || || ||||||| ||||| || |||||||| | || |
Sbjct: 66646463 cagagctggatgaccgagccgacgctttgcaggcaggagcatcgcaatttgagagcagcg 66646522
Query: 314 ctgccaagttgaagagaaaatattggtggaagaactgcaag 354
|||||||| | ||||| || ||||||||||| |||||||||
Sbjct: 66646523 ctgccaagctaaagaggaagtattggtggaaaaactgcaag 66646563
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,868,611
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 6
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)