Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029936.1| DNA polymerase beta [Bos taurus]. 572 e-163
Alignment gi|NP_001179488.1| DNA polymerase lambda [Bos taurus]. 165 7e-41
Alignment gi|XP_002698486.1| PREDICTED: polymerase (DNA directed), lambda... 165 7e-41
Alignment gi|NP_001030363.2| DNA-directed DNA polymerase mu [Bos taurus]. 95 1e-19
Alignment gi|NP_803461.1| DNA nucleotidylexotransferase [Bos taurus]. 84 3e-16
>ref|NP_001029936.1| DNA polymerase beta [Bos taurus].
Length = 335
Score = 572 bits (1474), Expect = e-163
Identities = 287/292 (98%), Positives = 290/292 (99%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVL+EVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKV FITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ 240
Query: 873 LPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
LPSKN+EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEK FT
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 292
>ref|NP_001179488.1| DNA polymerase lambda [Bos taurus].
Length = 575
Score = 165 bits (417), Expect = 7e-41
Identities = 94/259 (36%), Positives = 147/259 (56%), Gaps = 5/259 (1%)
Frame = +3
Query: 267 YRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSIN 446
Y KA + + + + S EA +PG+G ++AEKI E L +G LRKL+ I ++ +
Sbjct: 279 YAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVLE 336
Query: 447 FLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQM 626
+ + G G A+ + +G ++LED+R ++ L Q IGLK+++DF R+PREE ++
Sbjct: 337 LFSNIWGAGTKTAQMWYHQGFRSLEDIR-NQACLTTQQAIGLKHYDDFLDRMPREEAAEI 395
Query: 627 QDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQL 806
+ V + ++ + CGS+RRG + GDMDVLLTHP S + R+++ L
Sbjct: 396 EQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSHQG----VFSRLLDSL 451
Query: 807 QKVHFITDTLSKGE-----TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFT 971
++ F+TD L E K++GVCQLP HRR+DI ++P + C +LYFT
Sbjct: 452 RQQGFLTDDLVSHEENGQQQKYLGVCQLPGPGRR----HRRLDIIVVPYSELACALLYFT 507
Query: 972 GSDIFNKNMRAHALEKAFT 1028
GS FN++MRA A K +
Sbjct: 508 GSAHFNRSMRALAKTKGMS 526
>ref|XP_002698486.1| PREDICTED: polymerase (DNA directed), lambda [Bos taurus].
Length = 575
Score = 165 bits (417), Expect = 7e-41
Identities = 94/259 (36%), Positives = 147/259 (56%), Gaps = 5/259 (1%)
Frame = +3
Query: 267 YRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSIN 446
Y KA + + + + S EA +PG+G ++AEKI E L +G LRKL+ I ++ +
Sbjct: 279 YAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVLE 336
Query: 447 FLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQM 626
+ + G G A+ + +G ++LED+R ++ L Q IGLK+++DF R+PREE ++
Sbjct: 337 LFSNIWGAGTKTAQMWYHQGFRSLEDIR-NQACLTTQQAIGLKHYDDFLDRMPREEAAEI 395
Query: 627 QDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQL 806
+ V + ++ + CGS+RRG + GDMDVLLTHP S + R+++ L
Sbjct: 396 EQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSHQG----VFSRLLDSL 451
Query: 807 QKVHFITDTLSKGE-----TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFT 971
++ F+TD L E K++GVCQLP HRR+DI ++P + C +LYFT
Sbjct: 452 RQQGFLTDDLVSHEENGQQQKYLGVCQLPGPGRR----HRRLDIIVVPYSELACALLYFT 507
Query: 972 GSDIFNKNMRAHALEKAFT 1028
GS FN++MRA A K +
Sbjct: 508 GSAHFNRSMRALAKTKGMS 526
>ref|NP_001030363.2| DNA-directed DNA polymerase mu [Bos taurus].
Length = 488
Score = 94.7 bits (234), Expect = 1e-19
Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 25/292 (8%)
Frame = +3
Query: 201 DMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 380
+ L E A F+ + + I A+ +AASV+ P + + ++ + LP G + E
Sbjct: 157 ETLAEAAGFDGSEGRQI----AFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRVVQEL 212
Query: 381 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQ 560
L G ++E++R + ++ T++ G+G A ++ +G++TL DLR+ +L Q
Sbjct: 213 LEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRLTQQQ 272
Query: 561 RIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 740
+ GL++ +D I R ++ +Q V V++ T+ G FRRG D+D L+T
Sbjct: 273 KAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVDFLIT 332
Query: 741 HPSFTSESAKQPKLLHRVVEQLQKVHFI----------------TDTLSKGETKFMGVCQ 872
HP + ++ LL RV+ L+K + + T+ E F + +
Sbjct: 333 HP----QEGQEAGLLPRVMCYLKKQGLVLYHQHQHSQQGDLTQQSHTMDAFERSFC-IFR 387
Query: 873 LPSKNNEK---------EYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMR 1001
LP + R+D+ + P Q+ +L +TGS F + +R
Sbjct: 388 LPQPPGAAVGGAQKPCYAWKAVRVDLVVAPISQFPFALLGWTGSKHFERELR 439
>ref|NP_803461.1| DNA nucleotidylexotransferase [Bos taurus].
Length = 520
Score = 83.6 bits (205), Expect = 3e-16
Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 27/311 (8%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+RK N TD LA N E N+ Y + +AASV+ P I S + +
Sbjct: 167 QRKTTLNNYNHIFTDAFEILAENSEFKENEV--SYVTFMRAASVLKSLPFTIISMKDTEG 224
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G K+ I+E + G+ +++ + D+ S T V G+G + K+ G ++
Sbjct: 225 IPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRS 284
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L + + K Q+ G Y+ED + R E + +V V + T+ G
Sbjct: 285 LSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGG 344
Query: 693 FRRGAESSGDMDVLLTHP-SFTSESAKQPK---------------LLHRVVEQLQKVHFI 824
FRRG + D+D L+T P S E PK L+ E+ +
Sbjct: 345 FRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWEKKGLLLYYDLVESTFEKFKLPSRQ 404
Query: 825 TDTLSKGETKFMGVCQL------PSKNNEKE---YPHRRIDIRLIPKDQYYCGVLYFTGS 977
DTL + F+ + +L SK+N++E + R+D+ + P + +L +TGS
Sbjct: 405 VDTLDHFQKCFL-ILKLHHQRVDSSKSNQQEGKTWKAIRVDLVMCPYENRAFALLGWTGS 463
Query: 978 DIFNKNMRAHA 1010
F +++R +A
Sbjct: 464 RQFERDIRRYA 474
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,737,019
Number of extensions: 838614
Number of successful extensions: 2451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2443
Number of HSP's successfully gapped: 5
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532790.2| PREDICTED: similar to polymerase (DNA directed)... 577 e-165
Alignment gi|XP_856344.1| PREDICTED: similar to polymerase (DNA directed)... 508 e-144
Alignment gi|XP_856384.1| PREDICTED: similar to polymerase (DNA directed)... 504 e-143
Alignment gi|XP_856470.1| PREDICTED: similar to polymerase (DNA directed)... 278 8e-75
Alignment gi|XP_850651.1| PREDICTED: similar to DNA polymerase lambda (Po... 169 5e-42
Alignment gi|XP_862007.1| PREDICTED: similar to DNA polymerase lambda (Po... 162 4e-40
Alignment gi|XP_861980.1| PREDICTED: similar to DNA polymerase lambda (Po... 162 5e-40
Alignment gi|XP_543944.2| PREDICTED: similar to DNA nucleotidylexotransfe... 89 9e-18
Alignment gi|XP_849761.1| PREDICTED: similar to terminal deoxynucleotidyl... 85 1e-16
>ref|XP_532790.2| PREDICTED: similar to polymerase (DNA directed), beta isoform 1
[Canis familiaris].
Length = 335
Score = 577 bits (1487), Expect = e-165
Identities = 289/292 (98%), Positives = 291/292 (99%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 240
Query: 873 LPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
LPSKN+EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEK FT
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 292
>ref|XP_856344.1| PREDICTED: similar to polymerase (DNA directed), beta isoform 2
[Canis familiaris].
Length = 267
Score = 508 bits (1307), Expect = e-144
Identities = 256/258 (99%), Positives = 258/258 (100%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 240
Query: 873 LPSKNNEKEYPHRRIDIR 926
LPSKN+EKEYPHRRIDIR
Sbjct: 241 LPSKNDEKEYPHRRIDIR 258
>ref|XP_856384.1| PREDICTED: similar to polymerase (DNA directed), beta isoform 3
[Canis familiaris].
Length = 306
Score = 504 bits (1299), Expect = e-143
Identities = 260/292 (89%), Positives = 262/292 (89%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHPSFTSESAKQ GVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESAKQ-----------------------------GVCQ 211
Query: 873 LPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
LPSKN+EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEK FT
Sbjct: 212 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 263
>ref|XP_856470.1| PREDICTED: similar to polymerase (DNA directed), beta isoform 4
[Canis familiaris].
Length = 181
Score = 278 bits (710), Expect = 8e-75
Identities = 136/138 (98%), Positives = 137/138 (99%)
Frame = +3
Query: 615 MLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRV 794
MLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRV
Sbjct: 1 MLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRV 60
Query: 795 VEQLQKVHFITDTLSKGETKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTG 974
VEQLQKVHFITDTLSKGETKFMGVCQLPSKN+EKEYPHRRIDIRLIPKDQYYCGVLYFTG
Sbjct: 61 VEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTG 120
Query: 975 SDIFNKNMRAHALEKAFT 1028
SDIFNKNMRAHALEK FT
Sbjct: 121 SDIFNKNMRAHALEKGFT 138
>ref|XP_850651.1| PREDICTED: similar to DNA polymerase lambda (Pol Lambda) (DNA
polymerase kappa) (DNA polymerase beta-2) (Pol beta2)
isoform 2 [Canis familiaris].
Length = 576
Score = 169 bits (427), Expect = 5e-42
Identities = 94/259 (36%), Positives = 148/259 (57%), Gaps = 5/259 (1%)
Frame = +3
Query: 267 YRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSIN 446
Y KA + + + + S EA +PG+G ++AEKI E L +G LRKL+ I ++ +
Sbjct: 280 YAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPILE 337
Query: 447 FLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQM 626
+ + G G A+ + +G +TLED+R ++ L Q IGLK+++DF +RIPREE ++
Sbjct: 338 LFSNIWGAGTKTAQMWYQQGYRTLEDIR-NQASLTTQQAIGLKHYDDFLERIPREEATEI 396
Query: 627 QDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQL 806
+ V + + + CGS+RRG + GD+DVLLTHP S + R+++ L
Sbjct: 397 EQTVRKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGQSHQG----IFSRLLDSL 452
Query: 807 QKVHFITDTLSKGE-----TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFT 971
++ F+TD L E K++GVC+LP HRR+DI ++P ++ C +LYFT
Sbjct: 453 RRQGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR----HRRLDIIIVPYSEFACALLYFT 508
Query: 972 GSDIFNKNMRAHALEKAFT 1028
GS FN++MRA A K +
Sbjct: 509 GSAHFNRSMRALAKTKGMS 527
>ref|XP_862007.1| PREDICTED: similar to DNA polymerase lambda (Pol Lambda) (DNA
polymerase kappa) (DNA polymerase beta-2) (Pol beta2)
isoform 4 [Canis familiaris].
Length = 585
Score = 162 bits (411), Expect = 4e-40
Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 7/263 (2%)
Frame = +3
Query: 261 NAYRKAASVIAKY--PHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTS 434
NA + + Y P EA +PG+G ++AEKI E L +G LRKL+ I ++
Sbjct: 285 NALKSFHKPVTSYQVPAVTSGEEEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESV 342
Query: 435 SSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREE 614
+ + + G G A+ + +G +TLED+R ++ L Q IGLK+++DF +RIPREE
Sbjct: 343 PILELFSNIWGAGTKTAQMWYQQGYRTLEDIR-NQASLTTQQAIGLKHYDDFLERIPREE 401
Query: 615 MLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRV 794
+++ V + + + CGS+RRG + GD+DVLLTHP S + R+
Sbjct: 402 ATEIEQTVRKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGQSHQG----IFSRL 457
Query: 795 VEQLQKVHFITDTLSKGE-----TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGV 959
++ L++ F+TD L E K++GVC+LP HRR+DI ++P ++ C +
Sbjct: 458 LDSLRRQGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR----HRRLDIIIVPYSEFACAL 513
Query: 960 LYFTGSDIFNKNMRAHALEKAFT 1028
LYFTGS FN++MRA A K +
Sbjct: 514 LYFTGSAHFNRSMRALAKTKGMS 536
>ref|XP_861980.1| PREDICTED: similar to DNA polymerase lambda (Pol Lambda) (DNA
polymerase kappa) (DNA polymerase beta-2) (Pol beta2)
isoform 3 [Canis familiaris].
Length = 484
Score = 162 bits (410), Expect = 5e-40
Identities = 90/240 (37%), Positives = 140/240 (58%), Gaps = 5/240 (2%)
Frame = +3
Query: 324 EAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 503
EA +PG+G ++AEKI E L +G LRKL+ I ++ + + + G G A+ + +
Sbjct: 207 EAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYQQ 264
Query: 504 GIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATV 683
G +TLED+R ++ L Q IGLK+++DF +RIPREE +++ V + + +
Sbjct: 265 GYRTLEDIR-NQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVRKSAQAFNPGLLCVA 323
Query: 684 CGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGE----- 848
CGS+RRG + GD+DVLLTHP S + R+++ L++ F+TD L E
Sbjct: 324 CGSYRRGKATCGDVDVLLTHPDGQSHQG----IFSRLLDSLRRQGFLTDDLVSQEENGQQ 379
Query: 849 TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
K++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A K +
Sbjct: 380 QKYLGVCRLPGPGRR----HRRLDIIIVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 435
>ref|XP_543944.2| PREDICTED: similar to DNA nucleotidylexotransferase (Terminal
addition enzyme) (Terminal deoxynucleotidyltransferase)
(Terminal transferase) isoform 1 [Canis familiaris].
Length = 490
Score = 88.6 bits (218), Expect = 9e-18
Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 30/314 (9%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+R+ N TD LA N+E N+ + +AASV+ P I S + +
Sbjct: 136 QRRTTLNNYNNVFTDAFEVLAENYEFRENEVFSL--TFMRAASVLKSLPFTIISMKDTEG 193
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G ++ I+E + G+ +++ + D+ S T V G+G + K+ G +T
Sbjct: 194 IPCLGDQVKCIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRT 253
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L ++ + K Q+ G Y+ED + R E + +V V + T+ G
Sbjct: 254 LSKIKSDKSLKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVGAFLPDAFVTMTGG 313
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQ--PK---------------LLHRVVEQLQKVHF 821
FRRG + D+D L+T P T E +Q PK L+ E+L+
Sbjct: 314 FRRGKKMGHDVDFLITSPGSTDEDEEQLLPKVINLWERKGLLLYCDLVESTFEKLKLPSR 373
Query: 822 ITDTLSKGETKFM-----------GVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYF 968
D L + F+ G C S+ K + R+D+ + P ++ +L +
Sbjct: 374 KVDALDHFQKCFLILKLHHQRVDGGKC---SQQEGKTWKAIRVDLVMCPYERRAFALLGW 430
Query: 969 TGSDIFNKNMRAHA 1010
TGS F +++R +A
Sbjct: 431 TGSRQFERDLRRYA 444
>ref|XP_849761.1| PREDICTED: similar to terminal deoxynucleotidyltransferase isoform 2
isoform 2 [Canis familiaris].
Length = 510
Score = 85.1 bits (209), Expect = 1e-16
Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 30/314 (9%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+R+ N TD LA N+E N+ + +AASV+ P I S + +
Sbjct: 157 QRRTTLNNYNNVFTDAFEVLAENYEFRENEVFSL--TFMRAASVLKSLPFTIISMKDTEG 214
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G ++ I+E + G+ +++ + D+ S T V G+G + K+ G +T
Sbjct: 215 IPCLGDQVKCIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRT 274
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L ++ + K Q+ G Y+ED + R E + +V V + T+ G
Sbjct: 275 LSKIKSDKSLKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVGAFLPDAFVTMTGG 334
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQ--PK---------------LLHRVVEQLQKVHF 821
FRRG + D+D L+T P T E +Q PK L+ E+L+
Sbjct: 335 FRRGKKMGHDVDFLITSPGSTDEDEEQLLPKVINLWERKGLLLYCDLVESTFEKLKLPSR 394
Query: 822 ITDTLSKGETKFM-----------GVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYF 968
D L + F+ G C S+ K + R+D+ + P ++ +L +
Sbjct: 395 KVDALDHFQKCFLILKLHHQRVDGGKC---SQQEGKTWKAIRVDLVMCPYERRAFALLGW 451
Query: 969 TGSDIFNKNMRAHA 1010
TGS F +++R +A
Sbjct: 452 TGSR-FERDLRRYA 464
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,278,418
Number of extensions: 863630
Number of successful extensions: 2464
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2451
Number of HSP's successfully gapped: 10
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002681.1| DNA polymerase beta [Homo sapiens]. 569 e-162
Alignment gi|NP_037406.1| DNA polymerase lambda isoform a [Homo sapiens]. 167 2e-41
Alignment gi|NP_001167555.1| DNA polymerase lambda isoform a [Homo sapien... 167 2e-41
Alignment gi|NP_001167556.1| DNA polymerase lambda isoform b [Homo sapien... 159 4e-39
Alignment gi|NP_037416.1| DNA-directed DNA/RNA polymerase mu [Homo sapien... 106 4e-23
Alignment gi|NP_004079.3| DNA nucleotidylexotransferase isoform 1 [Homo s... 91 1e-18
Alignment gi|NP_001017520.1| DNA nucleotidylexotransferase isoform 2 [Hom... 88 1e-17
>ref|NP_002681.1| DNA polymerase beta [Homo sapiens].
Length = 335
Score = 569 bits (1467), Expect = e-162
Identities = 285/292 (97%), Positives = 289/292 (98%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNV+QAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYF DFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHPSFTSES KQPKLLH+VVEQLQKVHFITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ 240
Query: 873 LPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
LPSKN+EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEK FT
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 292
>ref|NP_037406.1| DNA polymerase lambda isoform a [Homo sapiens].
Length = 575
Score = 167 bits (422), Expect = 2e-41
Identities = 104/298 (34%), Positives = 164/298 (55%), Gaps = 7/298 (2%)
Frame = +3
Query: 156 SKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNA--YRKAASVIAKYPHKIKSGAEA 329
S +KA L+ IT+ L LA K + K+ A Y KA + + + + S EA
Sbjct: 245 SSQKATNHNLH--ITEKLEVLA---KAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEA 299
Query: 330 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 509
+PG+G ++AEKI E L +G LRKL+ I ++ + + + G G A+ + +G
Sbjct: 300 CSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGF 357
Query: 510 KTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 689
++LED+R + L Q IGLK++ DF +R+PREE +++ V + +S + CG
Sbjct: 358 RSLEDIRS-QASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACG 416
Query: 690 SFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGE-----TK 854
S+RRG + GD+DVL+THP S + R+++ L++ F+TD L E K
Sbjct: 417 SYRRGKATCGDVDVLITHPDGRSHRG----IFSRLLDSLRQEGFLTDDLVSQEENGQQQK 472
Query: 855 FMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A K +
Sbjct: 473 YLGVCRLPGPGRR----HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 526
>ref|NP_001167555.1| DNA polymerase lambda isoform a [Homo sapiens].
Length = 575
Score = 167 bits (422), Expect = 2e-41
Identities = 104/298 (34%), Positives = 164/298 (55%), Gaps = 7/298 (2%)
Frame = +3
Query: 156 SKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNA--YRKAASVIAKYPHKIKSGAEA 329
S +KA L+ IT+ L LA K + K+ A Y KA + + + + S EA
Sbjct: 245 SSQKATNHNLH--ITEKLEVLA---KAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEA 299
Query: 330 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 509
+PG+G ++AEKI E L +G LRKL+ I ++ + + + G G A+ + +G
Sbjct: 300 CSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGF 357
Query: 510 KTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 689
++LED+R + L Q IGLK++ DF +R+PREE +++ V + +S + CG
Sbjct: 358 RSLEDIRS-QASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACG 416
Query: 690 SFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGE-----TK 854
S+RRG + GD+DVL+THP S + R+++ L++ F+TD L E K
Sbjct: 417 SYRRGKATCGDVDVLITHPDGRSHRG----IFSRLLDSLRQEGFLTDDLVSQEENGQQQK 472
Query: 855 FMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A K +
Sbjct: 473 YLGVCRLPGPGRR----HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 526
>ref|NP_001167556.1| DNA polymerase lambda isoform b [Homo sapiens].
Length = 483
Score = 159 bits (402), Expect = 4e-39
Identities = 88/240 (36%), Positives = 139/240 (57%), Gaps = 5/240 (2%)
Frame = +3
Query: 324 EAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 503
EA +PG+G ++AEKI E L +G LRKL+ I ++ + + + G G A+ + +
Sbjct: 206 EACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQ 263
Query: 504 GIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATV 683
G ++LED+R + L Q IGLK++ DF +R+PREE +++ V + +S +
Sbjct: 264 GFRSLEDIRS-QASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVA 322
Query: 684 CGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGE----- 848
CGS+RRG + GD+DVL+THP S + R+++ L++ F+TD L E
Sbjct: 323 CGSYRRGKATCGDVDVLITHPDGRSHRG----IFSRLLDSLRQEGFLTDDLVSQEENGQQ 378
Query: 849 TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
K++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A K +
Sbjct: 379 QKYLGVCRLPGPGRR----HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
>ref|NP_037416.1| DNA-directed DNA/RNA polymerase mu [Homo sapiens].
Length = 494
Score = 106 bits (264), Expect = 4e-23
Identities = 75/306 (24%), Positives = 144/306 (47%), Gaps = 25/306 (8%)
Frame = +3
Query: 159 KRKAPQETLNGGITD---MLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEA 329
+R P N G+++ +L E A FE + + + + +AASV+ P + + ++
Sbjct: 144 QRPTPLTHHNTGLSEALEILAEAAGFEGSEGRLL----TFCRAASVLKALPSPVTTLSQL 199
Query: 330 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 509
+ LP G + + E L G ++E++R+ + ++ T++ G+G A ++ EG+
Sbjct: 200 QGLPHFGEHSSRVVQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGL 259
Query: 510 KTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 689
+TL+DLR+ KL Q+ GL++ +D + R ++ +Q +V V + T+ G
Sbjct: 260 RTLDDLREQPQKLTQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTG 319
Query: 690 SFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQ-LQKVHFITDTLSKGETKF--- 857
FRRG D+D L+THP E+ P+++ R+ +Q L H + + T+
Sbjct: 320 GFRRGKLQGHDVDFLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQ 379
Query: 858 ---------MGVCQLP---------SKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDI 983
+ +LP S + R+D+ + P Q+ +L +TGS +
Sbjct: 380 SHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKL 439
Query: 984 FNKNMR 1001
F + +R
Sbjct: 440 FQRELR 445
>ref|NP_004079.3| DNA nucleotidylexotransferase isoform 1 [Homo sapiens].
Length = 509
Score = 91.3 bits (225), Expect = 1e-18
Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 29/299 (9%)
Frame = +3
Query: 201 DMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 380
D+L E F +N + + + +AASV+ P I S + + +P +G+K+ I+E
Sbjct: 173 DILAENCEFRENEDSCV----TFMRAASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEI 228
Query: 381 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED-KLNHH 557
+ G+ +++ + D+ S T V G+G + K+ G +TL +R + K
Sbjct: 229 IEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKSLKFTRM 288
Query: 558 QRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLL 737
Q+ G Y+ED + R E + +V V + T+ G FRRG + D+D L+
Sbjct: 289 QKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGHDVDFLI 348
Query: 738 THPSFTSESAKQPKLLHRVVEQLQKVHFI-------------------TDTLSKGETKFM 860
T P T + + +LL +V+ +K + D L + F+
Sbjct: 349 TSPGSTED---EEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQKCFL 405
Query: 861 GVCQLPSKNNE---------KEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHA 1010
+ +LP + + K + R+D+ L P ++ +L +TGS F +++R +A
Sbjct: 406 -IFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRYA 463
>ref|NP_001017520.1| DNA nucleotidylexotransferase isoform 2 [Homo sapiens].
Length = 508
Score = 87.8 bits (216), Expect = 1e-17
Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 29/299 (9%)
Frame = +3
Query: 201 DMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 380
D+L E F +N + + + +AASV+ P I S + + +P +G+K+ I+E
Sbjct: 173 DILAENCEFRENEDSCV----TFMRAASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEI 228
Query: 381 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED-KLNHH 557
+ G+ +++ + D+ S T V G+G + K+ G +TL +R + K
Sbjct: 229 IEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKSLKFTRM 288
Query: 558 QRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLL 737
Q+ G Y+ED + R E + +V V + T+ G FRRG + D+D L+
Sbjct: 289 QKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGHDVDFLI 348
Query: 738 THPSFTSESAKQPKLLHRVVEQLQKVHFI-------------------TDTLSKGETKFM 860
T P T + + +LL +V+ +K + D L + F+
Sbjct: 349 TSPGSTED---EEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQKCFL 405
Query: 861 GVCQLP---------SKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHA 1010
+ +LP S K + R+D+ L P ++ +L +TGS F +++R +A
Sbjct: 406 -IFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSR-FERDLRRYA 462
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,766,041
Number of extensions: 860056
Number of successful extensions: 2422
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2409
Number of HSP's successfully gapped: 7
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035260.1| DNA polymerase beta [Mus musculus]. 563 e-160
Alignment gi|NP_064416.1| DNA polymerase lambda [Mus musculus]. 157 1e-38
Alignment gi|NP_059097.2| DNA-directed DNA/RNA polymerase mu [Mus musculu... 106 3e-23
Alignment gi|NP_001036693.1| DNA nucleotidylexotransferase isoform 2 [Mus... 88 1e-17
Alignment gi|NP_033371.2| DNA nucleotidylexotransferase isoform 1 [Mus mu... 88 1e-17
>ref|NP_035260.1| DNA polymerase beta [Mus musculus].
Length = 335
Score = 563 bits (1450), Expect = e-160
Identities = 280/292 (95%), Positives = 288/292 (98%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDML ELANFEKNV+QAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRV+GIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRK+EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNE+KKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHP+FTSES+KQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 240
Query: 873 LPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
LPS+ + KEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEK FT
Sbjct: 241 LPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 292
>ref|NP_064416.1| DNA polymerase lambda [Mus musculus].
Length = 573
Score = 157 bits (397), Expect = 1e-38
Identities = 102/298 (34%), Positives = 160/298 (53%), Gaps = 7/298 (2%)
Frame = +3
Query: 156 SKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNA--YRKAASVIAKYPHKIKSGAEA 329
S +KA L+ IT+ L LA K + K+ A Y KA + + + + S EA
Sbjct: 243 SSQKATNYNLH--ITEKLEVLA---KAYSVQGDKWRALGYAKAINALKSFHKPVSSYQEA 297
Query: 330 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 509
+PG+G ++AEK+ E L +G LRKL+ I D+ + + + G G A+ + +G
Sbjct: 298 CSIPGIGKRMAEKVMEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQMWYHQGF 355
Query: 510 KTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 689
+ LEDL+ L Q IGLK+++DF R+PREE +++ V + + + CG
Sbjct: 356 RNLEDLQSL-GSLTAQQAIGLKHYDDFLDRMPREEAAEIEQTVRISAQAFNPGLLCVACG 414
Query: 690 SFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGE-----TK 854
S+RRG + GD+DVL+THP S + +++ L++ F+TD L E K
Sbjct: 415 SYRRGKMTCGDVDVLITHPDGRSHRG----IFSCLLDSLRQQGFLTDDLVSQEENGQQQK 470
Query: 855 FMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKAFT 1028
++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A K +
Sbjct: 471 YLGVCRLPGPGKR----HRRLDIIVVPYCEFACALLYFTGSAHFNRSMRALAKTKGMS 524
>ref|NP_059097.2| DNA-directed DNA/RNA polymerase mu [Mus musculus].
Length = 496
Score = 106 bits (265), Expect = 3e-23
Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 25/299 (8%)
Frame = +3
Query: 180 TLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKI 359
TL + L E A FE N + + ++ +AASV+ P + S ++ LP G
Sbjct: 154 TLLSEALETLAEAAGFEANEGRLL----SFSRAASVLKSLPCPVASLSQLHGLPYFGEHS 209
Query: 360 AEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHE 539
I E L G +++++R + ++ T+V G+G A ++ EG++TL++LR+
Sbjct: 210 TRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQP 269
Query: 540 DKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG 719
+L Q+ GL+Y++D + R + +Q ++ V++ T+ G FRRG
Sbjct: 270 QRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGH 329
Query: 720 DMDVLLTHPSFTSESAKQPKLL--------------HR--VVEQLQKVHFITDTLSKGET 851
D+D L+THP E PK++ HR + + + + T+ E
Sbjct: 330 DVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFER 389
Query: 852 KFMGVCQLPSKNNE---------KEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMR 1001
F + LP + R+D+ + P Q+ +L +TGS F + +R
Sbjct: 390 SFC-ILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPFALLGWTGSQFFERELR 447
>ref|NP_001036693.1| DNA nucleotidylexotransferase isoform 2 [Mus musculus].
Length = 510
Score = 87.8 bits (216), Expect = 1e-17
Identities = 79/313 (25%), Positives = 136/313 (43%), Gaps = 29/313 (9%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+R+ N TD L LA N E N+ A+ +A+SV+ P I S + +
Sbjct: 156 QRRTTLNNYNQLFTDALDILAENDELRENEG--SCLAFMRASSVLKSLPFPITSMKDTEG 213
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G K+ I+ + G+ + + + D+ S T V G+G A K+ G +T
Sbjct: 214 IPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRT 273
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L ++ + + Q+ G Y+ED + R E + +V V + + T+ G
Sbjct: 274 LSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGG 333
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVE--QLQKVHFITDTLSKGETKF--- 857
FRRG + D+D L+T P T + +Q LLH+V + + Q + D L KF
Sbjct: 334 FRRGKMTGHDVDFLITSPEATEDEEQQ--LLHKVTDFWKQQGLLLYCDILESTFEKFKQP 391
Query: 858 ---------MGVCQL----------PSKNNEKE---YPHRRIDIRLIPKDQYYCGVLYFT 971
C L K+ ++E + R+D+ + P D+ +L +T
Sbjct: 392 SRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWT 451
Query: 972 GSDIFNKNMRAHA 1010
GS F +++R +A
Sbjct: 452 GSRQFERDLRRYA 464
>ref|NP_033371.2| DNA nucleotidylexotransferase isoform 1 [Mus musculus].
Length = 530
Score = 87.8 bits (216), Expect = 1e-17
Identities = 79/313 (25%), Positives = 136/313 (43%), Gaps = 29/313 (9%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+R+ N TD L LA N E N+ A+ +A+SV+ P I S + +
Sbjct: 156 QRRTTLNNYNQLFTDALDILAENDELRENEG--SCLAFMRASSVLKSLPFPITSMKDTEG 213
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G K+ I+ + G+ + + + D+ S T V G+G A K+ G +T
Sbjct: 214 IPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRT 273
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L ++ + + Q+ G Y+ED + R E + +V V + + T+ G
Sbjct: 274 LSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGG 333
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVE--QLQKVHFITDTLSKGETKF--- 857
FRRG + D+D L+T P T + +Q LLH+V + + Q + D L KF
Sbjct: 334 FRRGKMTGHDVDFLITSPEATEDEEQQ--LLHKVTDFWKQQGLLLYCDILESTFEKFKQP 391
Query: 858 ---------MGVCQL----------PSKNNEKE---YPHRRIDIRLIPKDQYYCGVLYFT 971
C L K+ ++E + R+D+ + P D+ +L +T
Sbjct: 392 SRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWT 451
Query: 972 GSDIFNKNMRAHA 1010
GS F +++R +A
Sbjct: 452 GSRQFERDLRRYA 464
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,469,889
Number of extensions: 739228
Number of successful extensions: 2002
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 5
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134280.2| PREDICTED: DNA polymerase beta-like [Sus scr... 466 e-131
Alignment gi|XP_001926893.1| PREDICTED: DNA polymerase lambda [Sus scrofa]. 164 1e-40
Alignment gi|XP_003134936.1| PREDICTED: DNA-directed DNA/RNA polymerase m... 99 5e-21
Alignment gi|XP_003133204.1| PREDICTED: DNA nucleotidylexotransferase-lik... 89 5e-18
>ref|XP_003134280.2| PREDICTED: DNA polymerase beta-like [Sus scrofa].
Length = 248
Score = 466 bits (1198), Expect = e-131
Identities = 237/241 (98%), Positives = 238/241 (98%)
Frame = +3
Query: 153 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 332
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 333 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 512
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 513 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQ 872
FRRGAESSGDMDVLLTHP+FTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFM Q
Sbjct: 181 FRRGAESSGDMDVLLTHPNFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMVSAQ 240
Query: 873 L 875
L
Sbjct: 241 L 241
>ref|XP_001926893.1| PREDICTED: DNA polymerase lambda [Sus scrofa].
Length = 575
Score = 164 bits (414), Expect = 1e-40
Identities = 93/259 (35%), Positives = 146/259 (56%), Gaps = 5/259 (1%)
Frame = +3
Query: 267 YRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSIN 446
Y KA + + + + S EA +PG+G ++AEKI E L +G LRKL+ I ++ +
Sbjct: 279 YAKAINALKSFHKPVTSYQEACAIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLQ 336
Query: 447 FLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQRIGLKYFEDFEKRIPREEMLQM 626
+ + G G A+ + +G ++LED+R ++ L Q IGLK++ DF R+PREE ++
Sbjct: 337 LFSNIWGAGTKTAQLWYHQGFRSLEDIR-NQASLTTQQAIGLKHYHDFLDRMPREEASEI 395
Query: 627 QDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQL 806
+ V + + + CGS+RRG + GD+DVLLTHP S + R+++ L
Sbjct: 396 EQTVREAAQAFNPGLLCVACGSYRRGRATCGDVDVLLTHPDGRSHQG----IFSRLLDSL 451
Query: 807 QKVHFITDTLSKGE-----TKFMGVCQLPSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFT 971
++ F+TD L E K++GVCQLP HRR+DI ++P ++ C +LYFT
Sbjct: 452 RQRGFLTDDLVSQEQHGQQQKYLGVCQLPGPGRR----HRRLDIIVVPYSEFACALLYFT 507
Query: 972 GSDIFNKNMRAHALEKAFT 1028
GS FN++MRA A K +
Sbjct: 508 GSAHFNRSMRALAKTKGMS 526
>ref|XP_003134936.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sus scrofa].
Length = 491
Score = 98.6 bits (244), Expect = 5e-21
Identities = 55/195 (28%), Positives = 102/195 (52%)
Frame = +3
Query: 201 DMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 380
+ L E A+F+ + + + ++ +AASV+ P + + ++ + LP G I E
Sbjct: 157 ETLAEAADFDGSKGRHV----SFCRAASVLKALPSPVTALSQLQGLPHFGEHSRRVIQEL 212
Query: 381 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHEDKLNHHQ 560
L G ++E++R + ++ T++ G+G A ++ EG++TL+DLR+ +L Q
Sbjct: 213 LEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADQWYQEGLRTLDDLREQPQRLTKQQ 272
Query: 561 RIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 740
+ GL++++D I R E+ +Q +V V +V T+ G FRRG D+D L+T
Sbjct: 273 KAGLQHYQDLSALILRSEVEALQQVVEAAVGQVLPGATVTLAGGFRRGKLQGHDVDFLIT 332
Query: 741 HPSFTSESAKQPKLL 785
HP E+ P ++
Sbjct: 333 HPQEGLEAGLLPSVI 347
>ref|XP_003133204.1| PREDICTED: DNA nucleotidylexotransferase-like [Sus scrofa].
Length = 510
Score = 88.6 bits (218), Expect = 5e-18
Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 29/313 (9%)
Frame = +3
Query: 159 KRKAPQETLNGGITDMLTELA-NFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKK 335
+R+ N TD LA N+E N+ A+ +AASV+ P I S + +
Sbjct: 156 QRRTTLNNCNHIFTDAFEVLAENYEFRENETFCL--AFMRAASVLKSLPFTIISMKDTEG 213
Query: 336 LPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKT 515
+P +G K+ I+E + G+ +++ + D+ S T V G+G + ++ G ++
Sbjct: 214 IPCLGDKVKCVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSERWFRMGFRS 273
Query: 516 LEDLRKHED-KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 692
L +R + K Q+ G Y+ED + R E + +V V+ + T+ G
Sbjct: 274 LSKIRSDKTLKFTRMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVQAFLPDAFVTMTGG 333
Query: 693 FRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQK------VHFITDTLSKGETK 854
FRRG + D+D L+T P T + +Q LL +VV ++ + TL K +
Sbjct: 334 FRRGKKMGHDVDFLITSPGSTDDEEQQ--LLPKVVNLWEREGLLLYCDLVESTLEKSKLP 391
Query: 855 FMGVCQL---------------------PSKNNEKEYPHRRIDIRLIPKDQYYCGVLYFT 971
V L S+ K + R+D+ + P + +L +T
Sbjct: 392 SRNVDALDHFQKCFLILKLHHQRVDSGMSSQQEGKTWKAIRVDLVMCPYELRAFALLGWT 451
Query: 972 GSDIFNKNMRAHA 1010
GS F +++R +A
Sbjct: 452 GSRQFERDLRRYA 464
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,897,303
Number of extensions: 532477
Number of successful extensions: 1540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002536
(1047 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 422 e-115
>Sscrofa_Chr17
|| Length = 69701581
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 1 gtcagaggcagccattgttccgccggtctcgctggcttggcggagaccatgatggtcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13109612 gtcagaggcagccattgttccgccggtctcgctggcttggcggagaccatgatggtcctc 13109671
Query: 61 ccccctctccaagtcccggcccttacttaaagctgggagagggggcttgtcgccggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13109672 ccccctctccaagtcccggcccttacttaaagctgggagagggggcttgtcgccggctgt 13109731
Query: 121 gagcgcgctgcggtcctcgcgtgcagaccaccatgagcaagcggaaggcgccgcaggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13109732 gagcgcgctgcggtcctcgcgtgcagaccaccatgagcaagcggaaggcgccgcaggaga 13109791
Query: 181 ctctgaacggaggcatcaccgacatgctcacag 213
|||||||||||||||||||||||||||||||||
Sbjct: 13109792 ctctgaacggaggcatcaccgacatgctcacag 13109824
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 770 acagccaaagctgctacatcgtgttgtggagcagttacaaaaggtccattttattacaga 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13131717 acagccaaagctgctacatcgtgttgtggagcagttacaaaaggtccattttattacaga 13131776
Query: 830 tactctgtcaaaaggtgaaacaaagttcatgg 861
||||||||||||||||||||||||||||||||
Sbjct: 13131777 tactctgtcaaaaggtgaaacaaagttcatgg 13131808
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 338 gcctggagtaggaacaaaaattgctgaaaagattgatgagtttttagctactggaaaatt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13118845 gcctggagtaggaacaaaaattgctgaaaagattgatgagtttttagctactggaaaatt 13118904
Query: 398 gcgtaaactggaaaag 413
||||||||||||||||
Sbjct: 13118905 gcgtaaactggaaaag 13118920
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 630 gatattgtactgaatgaagttaaaaaagtggattctgaatacattgctacagtctgtggc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13127853 gatattgtactgaatgaagttaaaaaagtggattctgaatacattgctacagtctgtggc 13127912
Query: 690 agtttcagaagaggt 704
|||||||||||||||
Sbjct: 13127913 agtttcagaagaggt 13127927
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 269 tagaaaagcggcatctgtgatagcaaagtacccacacaaaataaagagtggagcagaagc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13115095 tagaaaagcggcatctgtgatagcaaagtacccacacaaaataaagagtggagcagaagc 13115154
Query: 329 taagaaactg 338
||||||||||
Sbjct: 13115155 taagaaactg 13115164
Score = 137 bits (69), Expect = 1e-29
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 701 aggtgcagagtccagtggtgacatggatgttcttctgacccatccaagttttacctctga 760
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 13129593 aggtgcagagtccagtggtgacatggatgttcttctgacccatccaaattttacctctga 13129652
Query: 761 gtcagccaaacag 773
|||||||||||||
Sbjct: 13129653 gtcagccaaacag 13129665
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 410 aaagattcggcaggatgatacaagttcatccatcaatttcctgactcgagttagtggcat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13119696 aaagattcggcaggatgatacaagttcatccatcaatttcctgactcgagttagtggcat 13119755
Query: 470 tgg 472
|||
Sbjct: 13119756 tgg 13119758
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 211 cagaactcgcaaactttgagaagaacgtgaaccaggctatacacaagtacaacgcctata 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13110146 cagaactcgcaaactttgagaagaacgtgaaccaggctatacacaagtacaacgcctata 13110205
Query: 271 g 271
|
Sbjct: 13110206 g 13110206
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 575 atattttgaggactttgagaaaagaattcctcgtgaagagatgttacaaatgcaag 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13127701 atattttgaggactttgagaaaagaattcctcgtgaagagatgttacaaatgcaag 13127756
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 521 agatctcagaaaacatgaagataaattgaaccatcatcagcgaattgggctaaa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13125523 agatctcagaaaacatgaagataaattgaaccatcatcagcgaattgggctaaa 13125576
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 472 gtccatctgctgcaaggaagtttgtagatgaaggaattaaaacattagaag 522
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13121227 gtccatctgctgcaaggaagtttgtagatgaaggaattaaaacattagaag 13121277
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,715,031
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 11
Length of query: 1047
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1026
Effective length of database: 2,808,413,156
Effective search space: 2881431898056
Effective search space used: 2881431898056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)