Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032684.1| tetraspanin-31 [Bos taurus]. 345 3e-95
Alignment gi|NP_001030439.1| tetraspanin-13 [Bos taurus]. 195 5e-50
>ref|NP_001032684.1| tetraspanin-31 [Bos taurus].
Length = 210
Score = 345 bits (886), Expect = 3e-95
Identities = 171/210 (81%), Positives = 176/210 (83%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAK
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
NHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTD+INASW VMSNKTR
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDVINASWWVMSNKTR 120
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
+ELERSFDCCGLFNLTTLDQQDYAFCTA+CKSRSP+CQMCGEKFL+HSDEALKILGGVGL
Sbjct: 121 DELERSFDCCGLFNLTTLDQQDYAFCTAVCKSRSPTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWLAMRFRNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_001030439.1| tetraspanin-13 [Bos taurus].
Length = 204
Score = 195 bits (496), Expect = 5e-50
Identities = 100/210 (47%), Positives = 124/210 (59%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKN LCALN++Y LV LLLIG+AAW
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
HHQVLLFFYMIIL LVFI QF +SC+CLA+N +Q ++ W ++ R
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQAQLLEVGWNNTAS-AR 119
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
++++R+ +CCG + D C A C S C C R++ E L+ +GG+GL
Sbjct: 120 DDIQRNLNCCGFRSFNPNDT-----CLASCVKSSHPCSPCAPIIGRYAGEVLRFVGGIGL 174
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 175 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,000,513
Number of extensions: 1042787
Number of successful extensions: 3699
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531651.1| PREDICTED: similar to sarcoma amplified sequenc... 333 1e-91
Alignment gi|XP_539449.2| PREDICTED: similar to Tetraspanin-13 (Tspan-13)... 201 9e-52
>ref|XP_531651.1| PREDICTED: similar to sarcoma amplified sequence [Canis
familiaris].
Length = 210
Score = 333 bits (855), Expect = 1e-91
Identities = 167/210 (79%), Positives = 171/210 (81%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKNALCALNVVYMLVGLLLIGVAAW K
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
NHHQVLLFFYMIILGLVFIFQFGISCSCLAIN SKQTD+INASW VMSN TR
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINRSKQTDVINASWWVMSNNTR 120
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
+ELERSFDCCGLFNLTTL QQDYAFCTAICKSRS +CQMCGEKFL+HSDEALKILGGVGL
Sbjct: 121 DELERSFDCCGLFNLTTLYQQDYAFCTAICKSRSSTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWLAMRFRNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|XP_539449.2| PREDICTED: similar to Tetraspanin-13 (Tspan-13) (Transmembrane 4
superfamily member 13) (Tetraspan NET-6) [Canis
familiaris].
Length = 313
Score = 201 bits (511), Expect = 9e-52
Identities = 102/214 (47%), Positives = 128/214 (59%)
Frame = +2
Query: 161 KAGEMVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXX 340
+A EMVCGGFACSKN LCALN++Y LV LLLIG+AAW
Sbjct: 106 RAAEMVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFL 165
Query: 341 XXXXXXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMS 520
HHQVLLFFYMIIL LVFI QF +SC+CLA+N +Q ++ W +
Sbjct: 166 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNEEQQGQLLEVGWNNTA 225
Query: 521 NKTRNELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILG 700
+ RN+++R+ +CCG + D C A C S C +C +++ E L+ +G
Sbjct: 226 S-ARNDIQRNLNCCGFRSFNPNDT-----CLASCAKSSHPCSLCAPIIGKYAGEVLRFVG 279
Query: 701 GVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
G+GLFFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 280 GIGLFFSFTEILGVWLTYRYRNQKDPRANPSAFL 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,674,923
Number of extensions: 1074765
Number of successful extensions: 3823
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3810
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005972.1| tetraspanin-31 [Homo sapiens]. 329 3e-90
Alignment gi|NP_055214.1| tetraspanin-13 [Homo sapiens]. 195 5e-50
>ref|NP_005972.1| tetraspanin-31 [Homo sapiens].
Length = 210
Score = 329 bits (843), Expect = 3e-90
Identities = 165/210 (78%), Positives = 170/210 (80%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKNALCALNVVYMLV LLLIGVAAW K
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
NHHQVLLFFYMIILGLVFIFQF ISCSCLAIN SKQTD+INASW VMSNKTR
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTR 120
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
+ELERSFDCCGLFNLTTL QQDY FCTAICKS+SP+CQMCGEKFL+HSDEALKILGGVGL
Sbjct: 121 DELERSFDCCGLFNLTTLYQQDYDFCTAICKSQSPTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWLAMRFRNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_055214.1| tetraspanin-13 [Homo sapiens].
Length = 204
Score = 195 bits (496), Expect = 5e-50
Identities = 100/210 (47%), Positives = 124/210 (59%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKN LCALN++Y LV LLLIG+AAW
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
HHQVLLFFYMIIL LVFI QF +SC+CLA+N +Q ++ W ++ R
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTAS-AR 119
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
N+++R+ +CCG ++ D C A C SC C ++ E L+ +GG+GL
Sbjct: 120 NDIQRNLNCCGFRSVNPNDT-----CLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGL 174
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 175 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,929,033
Number of extensions: 1062987
Number of successful extensions: 3701
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080258.1| tetraspanin-31 [Mus musculus]. 307 8e-84
Alignment gi|NP_079635.1| tetraspanin-13 [Mus musculus]. 193 2e-49
>ref|NP_080258.1| tetraspanin-31 [Mus musculus].
Length = 210
Score = 307 bits (787), Expect = 8e-84
Identities = 151/210 (71%), Positives = 164/210 (78%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACS+NALCALNVVYMLVG LLIGVAAW K
Sbjct: 1 MVCGGFACSRNALCALNVVYMLVGFLLIGVAAWGKGLGVVSSIHIIGGVIAVGVFLLLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
NHHQVLLFFYMIILGLVFIFQFGISCSCLAIN + Q D+INASW V+SN TR
Sbjct: 61 VAGLVGAANHHQVLLFFYMIILGLVFIFQFGISCSCLAINRNTQADVINASWSVLSNSTR 120
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
+ELERSFDCCGLFNLTTL QD C+A+CK++S +CQMCGE+FL+HSD+ALKILGGVGL
Sbjct: 121 HELERSFDCCGLFNLTTLRLQDDTSCSAVCKTKSSTCQMCGERFLKHSDKALKILGGVGL 180
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWLAMRFRNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_079635.1| tetraspanin-13 [Mus musculus].
Length = 204
Score = 193 bits (491), Expect = 2e-49
Identities = 98/210 (46%), Positives = 123/210 (58%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGF+CSKN LCALN++Y LV LLLIG+AAW
Sbjct: 1 MVCGGFSCSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
HHQVLLFFYMIIL LVFI QF +SC+CLA+N +Q ++ W ++ R
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNREQQGQLLEVGWNNTAS-AR 119
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
N+++R+ +CCG + D C A C + C C ++ E L+ +GG+GL
Sbjct: 120 NDIQRNLNCCGFRSYNPNDT-----CPASCAKSTQKCSSCAPIIGEYAGEVLRFVGGIGL 174
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 175 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,972,689
Number of extensions: 897996
Number of successful extensions: 3280
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3258
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360785.1| PREDICTED: tetraspanin-31-like [Sus scrofa]. 353 7e-98
Alignment gi|XP_003357506.1| PREDICTED: tetraspanin-13-like [Sus scrofa]. 200 9e-52
>ref|XP_003360785.1| PREDICTED: tetraspanin-31-like [Sus scrofa].
Length = 210
Score = 353 bits (907), Expect = 7e-98
Identities = 177/210 (84%), Positives = 177/210 (84%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAK
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
NHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 120
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL
Sbjct: 121 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 180
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWLAMRFRNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|XP_003357506.1| PREDICTED: tetraspanin-13-like [Sus scrofa].
Length = 204
Score = 200 bits (509), Expect = 9e-52
Identities = 102/210 (48%), Positives = 126/210 (60%)
Frame = +2
Query: 173 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKXXXXXXXXXXXXXXXXXXXXXXXXX 352
MVCGGFACSKN LCALN++Y LV LLLIG+AAW
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 353 XXXXXXXXNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 532
HHQVLLFFYMIIL LVFIFQF +SC+CLA+N +Q+ ++ W ++ R
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTAS-AR 119
Query: 533 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 712
N+++R+ +CCG L D C A C SC C +++ E L+ +GG+GL
Sbjct: 120 NDIQRNLNCCGFRRLNPNDT-----CLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGL 174
Query: 713 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 802
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 175 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,106,604
Number of extensions: 667226
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2305
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002537
(1032 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892775.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 498 e-138
>gb|GL892775.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1606
Length = 50433
Score = 498 bits (251), Expect = e-138
Identities = 287/304 (94%)
Strand = Plus / Minus
Query: 729 agatccttggtgtttggctagcaatgagatttcggaatcagaaggaccctcgagccaacc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36591 agatccttggtgtttggctagcaatgagatttcggaatcagaaggaccctcgagccaacc 36532
Query: 789 ctagtgcctttctatgagatgctgaatccttctgacttttctcccgctgtttgctctccc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36531 ctagtgcctttctatgagatgctgaatccttctgacttttctcccgctgtttgctctccc 36472
Query: 849 taagccnnnnnnnnccccctcccttagggaaaacctggggtttacagccctttttgtttg 908
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36471 taagccttttttttccccctcccttagggaaaacctggggtttacagccctttttgtttg 36412
Query: 909 aggaaaaaggaaaggtcttttgccatgttccctagatgactgaatagctaggctttatgc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36411 aggaaaaaggaaaggtcttttgccatgttccctagatgactgaatagctaggctttatgc 36352
Query: 969 cttgacatgttttgttgggaaacagattataaagaatnnnnnnnccttccttcctctctc 1028
||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 36351 cttgacatgttttgttgggaacaagattataaagaataaaaaaaccttccttcctctctc 36292
Query: 1029 ccta 1032
||||
Sbjct: 36291 ccta 36288
Score = 450 bits (227), Expect = e-124
Identities = 233/235 (99%)
Strand = Plus / Minus
Query: 1 ttagccccgagtttagccaatgcaaaggcaggggtgggacggtgcaggcgcaaaggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38766 ttagccccgagtttagccaatgcaaaggcaggggtgggacggtgcaggcgcaaaggatta 38707
Query: 61 ggtttggctagactcgatttaaagagacagaagctgtcggagtccaagaagacggtcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38706 ggtttggctagactcgatttaaagagacagaagctgtcggagtccaagaagacggtcccc 38647
Query: 121 gcgaccctccccccaagtccttgggaccacttgggtccccaaagctggggagatggtctg 180
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38646 gggagcctccccccaagtccttgggaccacttgggtccccaaagctggggagatggtctg 38587
Query: 181 cggaggctttgcctgctccaagaatgcgctgtgtgcgctcaacgtggtctacatg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38586 cggaggctttgcctgctccaagaatgcgctgtgtgcgctcaacgtggtctacatg 38532
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 235 gctggtaggcttgttgctcattggagtggctgcttgggctaaaggcctgggtctggtgtc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38017 gctggtaggcttgttgctcattggagtggctgcttgggctaaaggcctgggtctggtgtc 37958
Query: 295 cagcatccacatcatcggaggagtcatagccgtgggagtcttccttcttctcattgcggt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37957 cagcatccacatcatcggaggagtcatagccgtgggagtcttccttcttctcattgcggt 37898
Query: 355 ggctggactggtgggtgctgtcaaccaccatcaagtactgctattcttt 403
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37897 ggctggactggtgggtgctgtcaaccaccatcaagtactgctattcttt 37849
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 482 cagacagatatcatcaatgcttcttggcgggtcatgagcaacaagactcggaatgaactg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37229 cagacagatatcatcaatgcttcttggcgggtcatgagcaacaagactcggaatgaactg 37170
Query: 542 gaaagaagttttgattgctgtggcttgttcaacctcacaaccctggatcaacaagattat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37169 gaaagaagttttgattgctgtggcttgttcaacctcacaaccctggatcaacaagattat 37110
Query: 602 gctttctgcactgca 616
|||||||||||||||
Sbjct: 37109 gctttctgcactgca 37095
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 617 atctgcaagagccggagcccctcatgtcagatgtgtggagagaagtttcttaggcattca 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36804 atctgcaagagccggagcccctcatgtcagatgtgtggagagaagtttcttaggcattca 36745
Query: 677 gatgaagccctgaaaatcctgggaggtgttggactcttctttagctttacagag 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36744 gatgaagccctgaaaatcctgggaggtgttggactcttctttagctttacagag 36691
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 404 tacatgatcatccttggcttggtcttcatcttccagtttggaatctcttgctcatgtctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37626 tacatgatcatccttggcttggtcttcatcttccagtttggaatctcttgctcatgtctg 37567
Query: 464 gctattaacctaagcaaacag 484
|||||||||||||||||||||
Sbjct: 37566 gctattaacctaagcaaacag 37546
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,938,593
Number of extensions: 394
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 7
Length of query: 1032
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1011
Effective length of database: 2,808,413,156
Effective search space: 2839305700716
Effective search space used: 2839305700716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)