Animal-Genome cDNA 20110601C-002543


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo...   513   e-145
Alignment   gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo...   317   3e-86
Alignment   gi|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].     236   5e-62
Alignment   gi|NP_001029560.1| proteasome subunit beta type-9 precursor [Bo...    98   3e-20
Alignment   gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo...    97   5e-20
Alignment   gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo...    76   9e-14
Alignment   gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B...    76   1e-13
Alignment   gi|NP_001033628.1| proteasome subunit beta type-1 precursor [Bo...    57   7e-08
Alignment   gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].      54   6e-07
Alignment   gi|NP_001029438.1| proteasome subunit beta type-4 precursor [Bo...    53   8e-07

>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
          Length = 276

 Score =  513 bits (1320), Expect = e-145
 Identities = 249/275 (90%), Positives = 261/275 (94%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MALLDVCGA R Q+ DWA P A SRQRSDPGHY FS+RSPE ALPRGMQPTEF RSLGG+
Sbjct: 1    MALLDVCGATRGQRGDWAVPLAGSRQRSDPGHYGFSLRSPEFALPRGMQPTEFFRSLGGN 60

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
            GE  VQIEMAHGTTTLAFKFQHGVIVAVDSRASAG+YI TL+VNKVIEINPYLLGTMSGC
Sbjct: 61   GESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGTMSGC 120

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121  AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKG 180

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            PGLYYV+++GTRLSGNMFSTGSGN++AYGVMDSG+R DLSIEEAYDLGRRAIVHATHRDS
Sbjct: 181  PGLYYVNDSGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDS 240

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS
Sbjct: 241  YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 275


>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
          Length = 263

 Score =  317 bits (811), Expect = 3e-86
 Identities = 146/206 (70%), Positives = 179/206 (86%)
 Frame = +1

Query: 874  QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
            +IE+ HGTTTLAFKF+HGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC 
Sbjct: 53   RIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 112

Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
            +WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 113  FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 172

Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
            VD  G R+SG  FS GSG+ YAYGVMD G+ YDL +EEAYDL RRAI  AT+RD+YSGG 
Sbjct: 173  VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGS 232

Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQY 1491
            V++YH++EDGW++V S +V+DL  +Y
Sbjct: 233  VSLYHVREDGWIRVSSDNVADLHDKY 258


>ref|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].
          Length = 289

 Score =  236 bits (602), Expect = 5e-62
 Identities = 126/265 (47%), Positives = 166/265 (62%), Gaps = 2/265 (0%)
 Frame = +1

Query: 679  MALLDVCG--APRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLG 852
            MAL DVC   AP  Q+     P A S                  A+PRG  P  FL++ G
Sbjct: 1    MALQDVCKWQAPDTQETSPHLPQAGS-----------------WAVPRGWDPQAFLQTHG 43

Query: 853  GDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMS 1032
                      +AHGTTTLAF+F+HGVI A D+R+S G+Y+      KVI ++ +LLGT S
Sbjct: 44   P--------RLAHGTTTLAFRFRHGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTS 95

Query: 1033 GCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDK 1212
            G +ADC  W R+L +E RL  LR G   SV+ A+KLLS MM +YRG+ L + + +CGWD+
Sbjct: 96   GTSADCVTWYRVLQRELRLRALREGQLPSVAGAAKLLSVMMSRYRGLDLCVATALCGWDR 155

Query: 1213 KGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHR 1392
             GP L+YV  +GT L GN+FS GSG+ YAYGV+D G+RYD+S +EAY L R A+ HAT R
Sbjct: 156  SGPALFYVYSDGTCLQGNIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATRR 215

Query: 1393 DSYSGGVVNMYHMKEDGWVKVESTD 1467
            D+YSGG V+++H++E GW  V   D
Sbjct: 216  DAYSGGSVDLFHVRESGWEYVSRHD 240


>ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus].
          Length = 219

 Score = 97.8 bits (242), Expect = 3e-20
 Identities = 63/193 (32%), Positives = 100/193 (51%)
 Frame = +1

Query: 838  LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
            LR+   +G+     E+  GTT +A +F  GV+V  DSR SAG  +     +K+  ++ ++
Sbjct: 2    LRTGAPNGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHI 61

Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
               +SG AAD Q    + A +  L+ +   +   V AA+ ++ N+ Y+YR   LS   M+
Sbjct: 62   YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYR-EDLSAHLMV 120

Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
             GWD++  G  Y   +G  +       GSG+TY YG +D+ ++  +S EE       AI 
Sbjct: 121  AGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180

Query: 1378 HATHRDSYSGGVV 1416
             A  RD  SGGV+
Sbjct: 181  LAMKRDGSSGGVI 193


>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
          Length = 239

 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E++ GTT +A +F  GV++  DSR + GSYIA    +K+  I+  +    SG AAD Q  
Sbjct: 30   EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
               +  +   + +   +   V  A+ L   M Y+YR   L  G +I GWD ++G  +Y V
Sbjct: 90   ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
               G  +       GSG++Y YG +D+ +R  ++ EE       A+  A  RD  SGGV+
Sbjct: 149  PMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208

Query: 1417 NMYHMKEDG 1443
             +  + E G
Sbjct: 209  RLAAIAEPG 217


>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
          Length = 277

 Score = 76.3 bits (186), Expect = 9e-14
 Identities = 49/177 (27%), Positives = 86/177 (48%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     ++ G+++  D+RA+ G  +A    +K+  I+P +    +G AAD     +L+
Sbjct: 43   GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
            +    L+ L  G    V  A+++L  M+++Y+G  +    ++ G D  GP LY +  +G+
Sbjct: 103  SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161

Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
                   + GSG+  A  V +   R D+  EEA  L   AI      D  SG  +++
Sbjct: 162  TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218


>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
          Length = 273

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     FQ GVI+  D+RA+  S +A     K+  I P +    +G AAD +   R+ 
Sbjct: 39   GTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMA 98

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
            A    L+ L  G    V+  +++L   +++Y+G +G S+  ++ G D  GP LY V  +G
Sbjct: 99   ASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASL--IVGGVDFTGPQLYSVHPHG 156

Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
            +       + GSG   A  V++   + ++++E A +L   AI      D  SGG V+
Sbjct: 157  SYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVD 213


>ref|NP_001033628.1| proteasome subunit beta type-1 precursor [Bos taurus].
          Length = 241

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
 Frame = +1

Query: 889  HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
            +G T LA   +   IVA D+R S G  I T    K  ++    +   SG   DC    ++
Sbjct: 36   NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95

Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
            +    ++Y   N   ++  A + +LS ++Y  R     + ++I G D++G G +Y  D  
Sbjct: 96   IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 155

Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            G+    +  + GS          N   +  M +     LS++ A  L +   + A  RD 
Sbjct: 156  GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 215

Query: 1399 YSGGVVNMYHMKEDG 1443
            Y+G  + +  + ++G
Sbjct: 216  YTGDALKVCIVTKEG 230


>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
          Length = 241

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            G+T +  +   GV +AV+ R ++   +    + K++EI+ ++   MSG  AD +      
Sbjct: 34   GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
              E + ++    + ++V + ++ +SN+  Q+       G+M           G D+KGP 
Sbjct: 93   RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152

Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
            L+++D +GT +  +  + GS +  A   +   +   ++++EA
Sbjct: 153  LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194


>ref|NP_001029438.1| proteasome subunit beta type-4 precursor [Bos taurus].
          Length = 264

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
 Frame = +1

Query: 844  SLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLG 1023
            +L G      Q  M  GT+ L  KF+ GV++A D   S GS      +++++ +N   + 
Sbjct: 37   ALYGSPITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTML 96

Query: 1024 TMSGCAADCQYWERLLAK-ECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMI 1197
              SG  AD QY +++L +       L +G   S  A    L+  MY  R  M     +M+
Sbjct: 97   GASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMV 156

Query: 1198 CGWDKKGPG-LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRR 1368
             G    G   L YVD  G        +TG G   A  ++      +  LS  EA +L  R
Sbjct: 157  IGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVER 216

Query: 1369 AIVHATHRDSYSGGVVNMYHMKEDGWVKVE 1458
             +    +RD+ S     +  + E G V++E
Sbjct: 217  CMRVLYYRDARSYNRFQIATVTEKG-VEIE 245


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,867,500
Number of extensions: 2411903
Number of successful extensions: 8731
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8686
Number of HSP's successfully gapped: 14
Length of query: 599
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,107,870
Effective search space: 6926964170
Effective search space used: 6926964170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca...   473   e-133
Alignment   gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit...   321   2e-87
Alignment   gi|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit...   242   7e-64
Alignment   gi|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus ...   103   4e-22
Alignment   gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t...    99   1e-20
Alignment   gi|XP_546869.2| PREDICTED: similar to proteasome beta 10 subuni...    72   2e-12
Alignment   gi|XP_532275.2| PREDICTED: similar to Proteasome subunit beta t...    57   8e-08
Alignment   gi|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha ...    54   6e-07
Alignment   gi|XP_537658.1| PREDICTED: similar to Proteasome subunit beta t...    52   1e-06
Alignment   gi|XP_533057.2| PREDICTED: similar to Proteasome subunit beta t...    52   2e-06

>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
          Length = 276

 Score =  473 bits (1217), Expect = e-133
 Identities = 225/275 (81%), Positives = 256/275 (93%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MALL+VCGAPR  ++  A PA  S+ RSDPGHYSFS+R+PELA+PRGMQPTEF +SLG +
Sbjct: 1    MALLEVCGAPRGLRKACAVPALGSQLRSDPGHYSFSLRAPELAVPRGMQPTEFFQSLGEN 60

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
            GE+N++ EM HGTTTLAFKFQHGVIVAVDSRA+AG+YI++ RVNKVIEINP LLGTMSGC
Sbjct: 61   GEKNIRKEMVHGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGC 120

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNM+YQYRGM LSMGSMICGWDKKG
Sbjct: 121  AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKG 180

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            PGLYYVD+NGTRLSGNMFSTGSG+TYAYGVMDSG++  LS EEAY+LGRRAI +ATHRDS
Sbjct: 181  PGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDS 240

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            YSGG++NMYHMKEDGWVKVESTDV++L+HQY+EA+
Sbjct: 241  YSGGIINMYHMKEDGWVKVESTDVNELLHQYQEAN 275


>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
          Length = 263

 Score =  321 bits (822), Expect = 2e-87
 Identities = 148/205 (72%), Positives = 178/205 (86%)
 Frame = +1

Query: 877  IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
            IEM HGTTTLAFKFQHGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC +
Sbjct: 54   IEMLHGTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113

Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYV 1236
            WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYYV
Sbjct: 114  WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 173

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
            D  G R+SG  FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI  AT+RD+YSGG V
Sbjct: 174  DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233

Query: 1417 NMYHMKEDGWVKVESTDVSDLMHQY 1491
            N+YH++EDGW++V S +V+DL  +Y
Sbjct: 234  NLYHVREDGWIRVSSDNVADLHDKY 258


>ref|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
          Length = 282

 Score =  242 bits (618), Expect = 7e-64
 Identities = 128/273 (46%), Positives = 170/273 (62%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MAL DVC         W  P  +      P    +S+       P G  P  FLR  G  
Sbjct: 1    MALQDVC--------KWQAPDTQGLSPHLPPAGGWSV-------PLGCDPQTFLRLHGP- 44

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
                    +AHGTTTLAF+F+HGVI A D+R+S G+Y+A     K+I ++ +LLGT SG 
Sbjct: 45   -------RLAHGTTTLAFRFRHGVIAAADTRSSCGNYVACPASRKIIPVHQHLLGTTSGT 97

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            +ADC  W R+L +E RL  LR G   SV+ A++LLS MM  YRG+ L + + +CGWD+ G
Sbjct: 98   SADCAAWYRVLRRELRLRALREGRLPSVAGAARLLSAMMSCYRGLDLCVATALCGWDRSG 157

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            P L+YV  +GTRL GN+FS GSG+ YAYGV+D G+RYDLS +EAY L RRA+ HATHRD+
Sbjct: 158  PALFYVCSDGTRLPGNVFSVGSGSPYAYGVLDRGYRYDLSPQEAYALARRAVAHATHRDA 217

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYRE 1497
            YSGG V+++H++EDGW  V   D   L  + ++
Sbjct: 218  YSGGSVDLFHVREDGWEYVSRDDACVLYSELQK 250


>ref|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus familiaris].
          Length = 209

 Score =  103 bits (258), Expect = 4e-22
 Identities = 63/181 (34%), Positives = 95/181 (52%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E+  GTT +A +F  GV+V  DSR SAG  +     NK+  ++ ++   +SG AAD Q  
Sbjct: 6    EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAADAQAM 65

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
              + A +  L+ L   +   V AA+ ++ N+ Y+YR   LS   MI GWD++  G  Y  
Sbjct: 66   ADMAAYQLELHGLELEEPPLVLAAANVVRNISYKYR-EDLSAHLMIAGWDRRDGGQVYGT 124

Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
              G          GSG+TY YG +D+ ++  +S EE       AI  A +RD  SGGV++
Sbjct: 125  MGGMLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRSFTTNAIALAMNRDGSSGGVIH 184

Query: 1420 M 1422
            +
Sbjct: 185  L 185


>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
            (Proteasome delta chain) (Macropain delta chain)
            (Multicatalytic endopeptidase complex delta chain)
            (Proteasome subunit Y) [Canis familiaris].
          Length = 239

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E++ GTT +A +F+ GV++  DSR + GSYIA    +K+  I+  +    SG AAD Q  
Sbjct: 30   EVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
               +  +   + +   +   V  A+ L   M Y+YR   L  G +I GWD ++G  +Y V
Sbjct: 90   ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
               G  +  +    GSG++Y YG +D+ +R  ++ EE       A+  A  RD  SGGV+
Sbjct: 149  PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208

Query: 1417 NMYHMKEDG 1443
             +  + E G
Sbjct: 209  RLAAIAESG 217


>ref|XP_546869.2| PREDICTED: similar to proteasome beta 10 subunit proprotein [Canis
            familiaris].
          Length = 305

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
 Frame = +1

Query: 874  QIEMAH--GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINP-----YLLGTMS 1032
            +I  AH  GTT     F+ GVI+  D+RA+  S +      K+  I P      L    +
Sbjct: 58   RIPRAHKTGTTIAGLVFRDGVILGADTRATNDSVVMDKNCEKIHFIAPNEPPLVLSCCGA 117

Query: 1033 GCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWD 1209
            G AAD +   R+ A    L+ L  G    V+  ++LL   +++YRG +G S+  ++ G D
Sbjct: 118  GVAADAEMTTRMAASNMELHSLSTGREPRVTTVTRLLRQTLFRYRGHVGASL--LVGGVD 175

Query: 1210 KKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATH 1389
              GP LY V  +G+       + GSG   A  V++   + ++++E A +L   AI     
Sbjct: 176  FSGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQELLVEAITAGIL 235

Query: 1390 RDSYSGGVVN 1419
             D  SGG V+
Sbjct: 236  GDLGSGGSVD 245


>ref|XP_532275.2| PREDICTED: similar to Proteasome subunit beta type 1 (Proteasome
            component C5) (Macropain subunit C5) (Multicatalytic
            endopeptidase complex subunit C5) (Proteasome gamma
            chain) [Canis familiaris].
          Length = 241

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
 Frame = +1

Query: 889  HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
            +G T LA   +   IVA D+R S G  I T    K  ++    +   SG   DC    ++
Sbjct: 36   NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95

Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
            +    ++Y   N   ++  A + +LS ++Y  R     + ++I G D++G G +Y  D  
Sbjct: 96   IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 155

Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            G+    +  + GS          N   +  M +     LS++ A  L +   + A  RD 
Sbjct: 156  GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 215

Query: 1399 YSGGVVNMYHMKEDG 1443
            Y+G  + +  + ++G
Sbjct: 216  YTGDALRICIVTKEG 230


>ref|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
            zeta chain) (Macropain zeta chain) (Multicatalytic
            endopeptidase complex zeta chain) isoform 1 [Canis
            familiaris].
          Length = 241

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            G+T +  +   GV +AV+ R ++   +    + K++EI+ ++   MSG  AD +      
Sbjct: 34   GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
              E + ++    + ++V + ++ +SN+  Q+       G+M           G D+KGP 
Sbjct: 93   RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152

Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
            L+++D +GT +  +  + GS +  A   +   +   ++++EA
Sbjct: 153  LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194


>ref|XP_537658.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome
            theta chain) (Proteasome chain 13) (Proteasome component
            C10-II) [Canis familiaris].
          Length = 205

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 44/187 (23%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
 Frame = +1

Query: 889  HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
            +G   +A K ++ V +A D R    + + T    K+  +   L   ++G A D Q   + 
Sbjct: 7    NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66

Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG--PGLYYVDE 1242
            L     LY L+ G +I       +++N++Y+ R        +I G D K   P +  +D 
Sbjct: 67   LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126

Query: 1243 NGTRLSGNMFS-TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
             G  +  + F  +G+ +   YG+ +S    ++  E  ++   +A+++A  RD+ SG  V 
Sbjct: 127  IGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVI 186

Query: 1420 MYHMKED 1440
            ++ +++D
Sbjct: 187  VHIIEKD 193


>ref|XP_533057.2| PREDICTED: similar to Proteasome subunit beta type 4 precursor
            (Proteasome beta chain) (Macropain beta chain)
            (Multicatalytic endopeptidase complex beta chain)
            (Proteasome chain 3) [Canis familiaris].
          Length = 311

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 5/200 (2%)
 Frame = +1

Query: 874  QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
            Q  M  GT+ L  KF+ GV++A D   S GS      +++++ +N   +   SG  AD Q
Sbjct: 94   QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQ 153

Query: 1054 YWERLLAK-ECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPG- 1224
            Y +++L +       L +G   S  A    L+  MY  R  M     +M+ G    G   
Sbjct: 154  YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESF 213

Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            L YVD  G        +TG G   A  ++      +  LS  EA +L  R +    +RD+
Sbjct: 214  LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDA 273

Query: 1399 YSGGVVNMYHMKEDGWVKVE 1458
             S     +  + E G V++E
Sbjct: 274  RSYNRFQIATVTEKG-VEIE 292


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,359,505
Number of extensions: 2479299
Number of successful extensions: 9596
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9518
Number of HSP's successfully gapped: 11
Length of query: 599
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 490
Effective length of database: 15,240,880
Effective search space: 7468031200
Effective search space used: 7468031200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr...   511   e-144
Alignment   gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr...   437   e-122
Alignment   gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ...   320   4e-87
Alignment   gi|NP_001093250.1| proteasome subunit beta type-11 precursor [H...   244   1e-64
Alignment   gi|NP_001124197.1| proteasome subunit beta type-5 isoform 2 [Ho...   240   4e-63
Alignment   gi|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Ho...   193   5e-49
Alignment   gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ...    99   2e-20
Alignment   gi|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo...    91   5e-18
Alignment   gi|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo...    77   5e-14
Alignment   gi|NP_002792.1| proteasome subunit beta type-10 precursor [Homo...    75   2e-13

>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo sapiens].
          Length = 276

 Score =  511 bits (1315), Expect = e-144
 Identities = 249/275 (90%), Positives = 261/275 (94%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MALLDVCGAPR Q+ + A P A S +RSDPGHYSFSMRSPELALPRGMQPTEF +SLGGD
Sbjct: 1    MALLDVCGAPRGQRPESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGD 60

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
            GERNVQIEMAHGTTTLAFKFQHGVI AVDSRASAGSYI+ LRVNKVIEINPYLLGTMSGC
Sbjct: 61   GERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGC 120

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121  AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKG 180

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            PGLYYVDE+GTRLSGNMFSTGSGNTYAYGVMDSG+R +LS EEAYDLGRRAI +ATHRDS
Sbjct: 181  PGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDS 240

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            YSGGVVNMYHMKEDGWVKVESTDVSDL+HQYREA+
Sbjct: 241  YSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREAN 275


>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo sapiens].
          Length = 272

 Score =  437 bits (1123), Expect = e-122
 Identities = 211/229 (92%), Positives = 222/229 (96%)
 Frame = +1

Query: 817  GMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKV 996
            G++PTEF +SLGGDGERNVQIEMAHGTTTLAFKFQHGVI AVDSRASAGSYI+ LRVNKV
Sbjct: 43   GLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKV 102

Query: 997  IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMG 1176
            IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMG
Sbjct: 103  IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMG 162

Query: 1177 LSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYD 1356
            LSMGSMICGWDKKGPGLYYVDE+GTRLSGNMFSTGSGNTYAYGVMDSG+R +LS EEAYD
Sbjct: 163  LSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYD 222

Query: 1357 LGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            LGRRAI +ATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL+HQYREA+
Sbjct: 223  LGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREAN 271


>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
          Length = 263

 Score =  320 bits (819), Expect = 4e-87
 Identities = 147/205 (71%), Positives = 178/205 (86%)
 Frame = +1

Query: 877  IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
            IEM HGTTTLAFKF+HGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC +
Sbjct: 54   IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113

Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYV 1236
            WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYYV
Sbjct: 114  WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 173

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
            D  G R+SG  FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI  AT+RD+YSGG V
Sbjct: 174  DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233

Query: 1417 NMYHMKEDGWVKVESTDVSDLMHQY 1491
            N+YH++EDGW++V S +V+DL  +Y
Sbjct: 234  NLYHVREDGWIRVSSDNVADLHEKY 258


>ref|NP_001093250.1| proteasome subunit beta type-11 precursor [Homo sapiens].
          Length = 300

 Score =  244 bits (624), Expect = 1e-64
 Identities = 128/263 (48%), Positives = 169/263 (64%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MAL DVC         W  P  +      P       R+   A+PRG  P  FL+  G  
Sbjct: 1    MALQDVC--------KWQSPDTQGPSPHLP-------RAGGWAVPRGCDPQTFLQIHGP- 44

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
                    +AHGTTTLAF+F+HGVI A D+R+S GSY+A     KVI ++ +LLGT SG 
Sbjct: 45   -------RLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGT 97

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            +ADC  W R+L +E RL  LR G   SV++A+KLLS MM QYRG+ L + + +CGWD+ G
Sbjct: 98   SADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSG 157

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            P L+YV  +GTRL G++FS GSG+ YAYGV+D G+RYD+S +EAY L R A+ HATHRD+
Sbjct: 158  PELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDA 217

Query: 1399 YSGGVVNMYHMKEDGWVKVESTD 1467
            YSGG V+++H++E GW  V  +D
Sbjct: 218  YSGGSVDLFHVRESGWEHVSRSD 240


>ref|NP_001124197.1| proteasome subunit beta type-5 isoform 2 [Homo sapiens].
          Length = 160

 Score =  240 bits (612), Expect = 4e-63
 Identities = 106/155 (68%), Positives = 133/155 (85%)
 Frame = +1

Query: 1027 MSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGW 1206
            M+G AADC +WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGW
Sbjct: 1    MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60

Query: 1207 DKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHAT 1386
            DK+GPGLYYVD  G R+SG  FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI  AT
Sbjct: 61   DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120

Query: 1387 HRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQY 1491
            +RD+YSGG VN+YH++EDGW++V S +V+DL  +Y
Sbjct: 121  YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKY 155


>ref|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Homo sapiens].
          Length = 203

 Score =  193 bits (490), Expect = 5e-49
 Identities = 90/115 (78%), Positives = 106/115 (92%)
 Frame = +1

Query: 877  IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
            IEM HGTTTLAFKF+HGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC +
Sbjct: 54   IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113

Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGP 1221
            WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GP
Sbjct: 114  WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168


>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
          Length = 239

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E++ GTT +A +F  GV++  DSR + GSYIA    +K+  I+  +    SG AAD Q  
Sbjct: 30   EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
               +  +   + +   +   V  A+ L   M Y+YR   L  G +I GWD ++G  +Y V
Sbjct: 90   ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
               G  +  +    GSG++Y YG +D+ +R  ++ EE       A+  A  RD  SGGV+
Sbjct: 149  PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208

Query: 1417 NMYHMKEDG 1443
             +  + E G
Sbjct: 209  RLAAIAESG 217


>ref|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo sapiens].
          Length = 219

 Score = 90.5 bits (223), Expect = 5e-18
 Identities = 58/179 (32%), Positives = 91/179 (50%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E+  GTT +A +F  GV++  DSR SAG  +     +K+  ++  +   +SG AAD Q  
Sbjct: 16   EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
              + A +  L+ +   +   V AA+ ++ N+ Y+YR   LS   M+ GWD++  G  Y  
Sbjct: 76   ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGT 134

Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
              G          GSG+T+ YG +D+ ++  +S EE       AI  A  RD  SGGV+
Sbjct: 135  LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193


>ref|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo sapiens].
          Length = 277

 Score = 77.0 bits (188), Expect = 5e-14
 Identities = 49/177 (27%), Positives = 87/177 (49%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     ++ G+++  D+RA+ G  +A    +K+  I+P +    +G AAD     +L+
Sbjct: 43   GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
            +    L+ L  G    V  A+++L  M+++Y+G  +    ++ G D  GP LY +  +G+
Sbjct: 103  SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161

Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
                   + GSG+  A  V +   R D+  EEA +L   AI      D  SG  +++
Sbjct: 162  TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 218


>ref|NP_002792.1| proteasome subunit beta type-10 precursor [Homo sapiens].
          Length = 273

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     FQ GVI+  D+RA+  S +A     K+  I P +    +G AAD +   R++
Sbjct: 39   GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMV 98

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
            A +  L+ L  G    V+  +++L   +++Y+G +G S+  ++ G D  GP LY V  +G
Sbjct: 99   ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTGPQLYGVHPHG 156

Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
            +       + GSG   A  V++   + ++++E A  L   A+      D  SGG V+
Sbjct: 157  SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVD 213


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,494,707
Number of extensions: 2420648
Number of successful extensions: 8884
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8848
Number of HSP's successfully gapped: 15
Length of query: 599
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,737,052
Effective search space: 7235892532
Effective search space used: 7235892532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m...   490   e-138
Alignment   gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].       322   6e-88
Alignment   gi|NP_780413.1| proteasome subunit beta type-11 precursor [Mus ...   234   2e-61
Alignment   gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m...   100   6e-21
Alignment   gi|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].        91   4e-18
Alignment   gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m...    76   8e-14
Alignment   gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ...    74   4e-13
Alignment   gi|NP_035315.1| proteasome subunit beta type-1 precursor [Mus m...    55   1e-07
Alignment   gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l...    54   5e-07
Alignment   gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].       54   5e-07

>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
          Length = 276

 Score =  490 bits (1261), Expect = e-138
 Identities = 238/276 (86%), Positives = 257/276 (93%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MALLD+CGA R Q+ +WA   A S  RSDPGHYSFS ++PELALPRGMQPT FLRS GGD
Sbjct: 1    MALLDLCGAARGQRPEWAALDAGSGGRSDPGHYSFSAQAPELALPRGMQPTAFLRSFGGD 60

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
             ERNVQIEMAHGTTTLAFKFQHGVIVAVDSRA+AGSYI++LR+NKVIEINPYLLGTMSGC
Sbjct: 61   QERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGC 120

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121  AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKG 180

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            PGLYYVD+NGTRLSG MFSTGSGNTYAYGVMDSG+R DLS EEAYDLGRRAI +ATHRD+
Sbjct: 181  PGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDN 240

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
            YSGGVVNMYHMKEDGWVKVES+DVSDL+++Y EA+L
Sbjct: 241  YSGGVVNMYHMKEDGWVKVESSDVSDLLYKYGEAAL 276


>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
          Length = 264

 Score =  322 bits (825), Expect = 6e-88
 Identities = 149/211 (70%), Positives = 180/211 (85%)
 Frame = +1

Query: 874  QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
            +IEM HGTTTLAFKF HGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC 
Sbjct: 53   RIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 112

Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
            +WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 113  FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 172

Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
            VD  G R+SG  FS GSG+ YAYGVMD G+ YDL +EEAYDL RRAI  AT+RD+YSGG 
Sbjct: 173  VDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGA 232

Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
            VN+YH++EDGW++V S +V+DL  +Y   S+
Sbjct: 233  VNLYHVREDGWIRVSSDNVADLHDKYSSVSV 263


>ref|NP_780413.1| proteasome subunit beta type-11 precursor [Mus musculus].
          Length = 302

 Score =  234 bits (596), Expect = 2e-61
 Identities = 115/232 (49%), Positives = 156/232 (67%)
 Frame = +1

Query: 805  ALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLR 984
            A+PRG  P  FL+  G          +AHGTTTLAF+F+HGVI A D+R+S GSY+A   
Sbjct: 28   AVPRGCDPQTFLQIHGP--------RLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPA 79

Query: 985  VNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQY 1164
              KVI ++  LLGT SG +ADC  W R+L +E RL  LR G   SV+  +KLL+ MM  Y
Sbjct: 80   SRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCY 139

Query: 1165 RGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIE 1344
            RG+ L + + +CGWD  GP L+YV  +GT L G++FS GSG+ YAYGV+D G+ YD++I+
Sbjct: 140  RGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQ 199

Query: 1345 EAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREA 1500
            EAY L R A+ HATHRD+YSGG V+++H++E GW  V  +D   L  + ++A
Sbjct: 200  EAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACVLYRELQKA 251


>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
          Length = 238

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E++ GTT +A +F  GV++  DSR + GSYIA    +K+  I+ ++    SG AAD Q  
Sbjct: 29   EVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
               +  +   + +   +   V  A+ L   M Y+YR   L  G +I GWD ++G  +Y V
Sbjct: 89   ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 147

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
               G  +  +    GSG++Y YG +D+ +R  ++ +E       A+  A  RD  SGGV+
Sbjct: 148  PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVI 207

Query: 1417 NMYHMKEDG 1443
             +  ++E G
Sbjct: 208  RLAAIQESG 216


>ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].
          Length = 219

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 57/179 (31%), Positives = 93/179 (51%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E+  GTT +A +F  GV+V  DSR SAG+ +     +K+  ++ ++   +SG AAD Q  
Sbjct: 16   EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAI 75

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
              + A +  L+ L   +   V AA+ ++ N+ Y+YR   L    ++ GWD+   G  Y  
Sbjct: 76   ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQCEGGQVYGT 134

Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
              G  +       GSG++Y YG +D+ ++  ++ EE       AI  A +RD  SGGV+
Sbjct: 135  MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVI 193


>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
          Length = 277

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 49/177 (27%), Positives = 86/177 (48%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     ++ G+++  D+RA+ G  +A    +K+  I+P +    +G AAD     +L+
Sbjct: 43   GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
            +    L+ L  G    V  A+++L  M+++Y+G  +    ++ G D  GP LY +  +G+
Sbjct: 103  SSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161

Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
                   + GSG+  A  V +   R D+  EEA  L   AI      D  SG  +++
Sbjct: 162  TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218


>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
          Length = 273

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     F+ GVI+  D+RA+  S +A     K+  I P +    +G AAD +   R+ 
Sbjct: 39   GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMA 98

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
            A +  L+ L  G    V+  +++L   +++Y+G +G S+  ++ G D  GP LY V  +G
Sbjct: 99   ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--VVGGVDLNGPQLYEVHPHG 156

Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
            +       + GSG   A  +++   + ++++E A +L   AI      D  SGG V+
Sbjct: 157  SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 213


>ref|NP_035315.1| proteasome subunit beta type-1 precursor [Mus musculus].
          Length = 240

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
 Frame = +1

Query: 889  HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
            +G T LA   +   IVA D+R S G  I T    K  ++    +   SG   DC    ++
Sbjct: 35   NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 94

Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
            +    ++Y   N   ++  A + +LS ++Y  R     + ++I G D++G G +Y  D  
Sbjct: 95   IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 154

Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            G+    +  + GS          N   +  M +     L+++ A  L +   + A  RD 
Sbjct: 155  GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDV 214

Query: 1399 YSGGVVNMYHMKEDG 1443
            Y+G  + +  + ++G
Sbjct: 215  YTGDALRICIVTKEG 229


>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
          Length = 241

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            G+T +  +   GV +AV+ R ++   +    + K++EI+ ++   MSG  AD +      
Sbjct: 34   GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
              E + ++    + ++V + ++ +SN+  Q+       G+M           G D+KGP 
Sbjct: 93   RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152

Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
            L+++D +GT +  +  + GS +  A   +   +   ++++EA
Sbjct: 153  LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194


>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
          Length = 241

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            G+T +  +   GV +AV+ R ++   +    + K++EI+ ++   MSG  AD +      
Sbjct: 34   GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
              E + ++    + ++V + ++ +SN+  Q+       G+M           G D+KGP 
Sbjct: 93   RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152

Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
            L+++D +GT +  +  + GS +  A   +   +   ++++EA
Sbjct: 153  LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,987,430
Number of extensions: 2002271
Number of successful extensions: 7221
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7183
Number of HSP's successfully gapped: 13
Length of query: 599
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 492
Effective length of database: 12,403,707
Effective search space: 6102623844
Effective search space used: 6102623844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S...   561   e-160
Alignment   gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].         512   e-145
Alignment   gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S...   320   2e-87
Alignment   gi|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-l...   237   2e-62
Alignment   gi|XP_003354003.1| PREDICTED: LOW QUALITY PROTEIN: proteasome s...   203   2e-52
Alignment   gi|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-li...    98   2e-20
Alignment   gi|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].       98   2e-20
Alignment   gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].       97   3e-20
Alignment   gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].      75   9e-14
Alignment   gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su...    75   1e-13

>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
          Length = 276

 Score =  561 bits (1446), Expect = e-160
 Identities = 274/276 (99%), Positives = 275/276 (99%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
            MALLDVCGAPRAQ+EDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD
Sbjct: 1    MALLDVCGAPRAQQEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 60

Query: 859  GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
            GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSG 
Sbjct: 61   GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGS 120

Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
            AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG
Sbjct: 121  AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 180

Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
            PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS
Sbjct: 181  PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 240

Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
            YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL
Sbjct: 241  YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 276


>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
          Length = 260

 Score =  512 bits (1319), Expect = e-145
 Identities = 250/257 (97%), Positives = 252/257 (98%)
 Frame = +1

Query: 736  PAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK 915
            PAA  R  SDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK
Sbjct: 4    PAAMGRDCSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK 63

Query: 916  FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY 1095
            FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY
Sbjct: 64   FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY 123

Query: 1096 LRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS 1275
            LRNG+RISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS
Sbjct: 124  LRNGERISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS 183

Query: 1276 TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV 1455
            TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV
Sbjct: 184  TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV 243

Query: 1456 ESTDVSDLMHQYREASL 1506
            ESTDVSDL+HQYREA L
Sbjct: 244  ESTDVSDLLHQYREAIL 260


>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
          Length = 275

 Score =  320 bits (820), Expect = 2e-87
 Identities = 148/210 (70%), Positives = 181/210 (86%)
 Frame = +1

Query: 874  QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
            +IEM HGTTTLAFKF HGVIVA DSRA+AG+YIA+  V KVIEINPYLLGTM+G AADC 
Sbjct: 65   RIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 124

Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
            +WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 125  FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 184

Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
            VD  G R+SG  FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI  AT+RD+YSGG 
Sbjct: 185  VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGS 244

Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            VN+YH++EDGW++V S +V+DL  +Y E++
Sbjct: 245  VNLYHVREDGWIRVSSDNVADLHDKYSEST 274


>ref|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-like [Sus scrofa].
          Length = 291

 Score =  237 bits (604), Expect = 2e-62
 Identities = 126/276 (45%), Positives = 172/276 (62%), Gaps = 1/276 (0%)
 Frame = +1

Query: 679  MALLDVCGAPRAQKEDWAFPAAESRQRSDP-GHYSFSMRSPELALPRGMQPTEFLRSLGG 855
            MAL DVC         W        Q  DP G   +  ++   A+PRG  P  FL++ G 
Sbjct: 1    MALQDVC--------QW--------QALDPQGASPYLPQAGAWAVPRGWDPQTFLQTHGP 44

Query: 856  DGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSG 1035
                     +AHGTTTLAF+F+ GVI A D+R+S G+Y+      KVI ++ +LLGT SG
Sbjct: 45   --------RLAHGTTTLAFRFRDGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSG 96

Query: 1036 CAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKK 1215
             +ADC  W R+L +E RL  LR G   SV+ A+KLLS MM +YRG+ L + + +CGWD+ 
Sbjct: 97   TSADCTTWYRVLRRELRLRELREGQLPSVAGAAKLLSGMMSRYRGLDLCVATALCGWDRS 156

Query: 1216 GPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 1395
            GP L+YV  +GT L G++FS GSG+ YAYGV+D G+RYD+S +EAY L  RA+ HATHRD
Sbjct: 157  GPALFYVYSDGTLLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALACRAVAHATHRD 216

Query: 1396 SYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            +YSGG V+++H++E GW  V   D   L  + ++ S
Sbjct: 217  AYSGGSVDLFHVRESGWEHVSRNDAWVLYSELQKLS 252


>ref|XP_003354003.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-5-like
            [Sus scrofa].
          Length = 279

 Score =  203 bits (517), Expect = 2e-52
 Identities = 109/210 (51%), Positives = 145/210 (69%)
 Frame = +1

Query: 874  QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
            +I+M H TT LAFK   GVIVA DS   A +YIA+  V  VIEI+ YLL T +  A +C 
Sbjct: 62   RIKMLHHTTILAFKILLGVIVAADSWDMAVAYIASQTVKNVIEISLYLLATGAVGAVNC- 120

Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
               R LA++  +Y L+N   ISV+AASKLL+NM+YQY+GMGLSMG+MIC W K+GPGLYY
Sbjct: 121  ---RFLAQQXXIYELQNKGCISVAAASKLLANMVYQYKGMGLSMGTMICVWGKRGPGLYY 177

Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
            +D  G  + G  FS GS + +AYG M  G+ YDL +E AYD+  +A   A+  D+YSGG+
Sbjct: 178  MDSEGNWIWGVDFSVGSRSVHAYGFM--GYSYDLEVERAYDMASQATYXASXSDAYSGGL 235

Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
            VN+YH+ EDGW++  S +V+ L ++Y E S
Sbjct: 236  VNLYHVWEDGWIQSSSDNVAYLHYKYSEFS 265


>ref|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-like [Sus scrofa].
          Length = 219

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 64/193 (33%), Positives = 99/193 (51%)
 Frame = +1

Query: 838  LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
            LR+ G  G+     E+  GTT +A +F  GV+V  DSR SAG  +     +K+  ++  +
Sbjct: 2    LRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRI 61

Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
               +SG AAD Q    + A +  L+ +   +   V AA+ ++ N+ Y+YR   LS   M+
Sbjct: 62   YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYR-EDLSAHLMV 120

Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
             GWD++  G  Y    G  +       GSG+TY YG +D+ ++  +S EE       AI 
Sbjct: 121  AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180

Query: 1378 HATHRDSYSGGVV 1416
             A +RD  SGGV+
Sbjct: 181  LAMNRDGSSGGVI 193


>ref|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].
          Length = 219

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 64/193 (33%), Positives = 99/193 (51%)
 Frame = +1

Query: 838  LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
            LR+ G  G+     E+  GTT +A +F  GV+V  DSR SAG  +     +K+  ++  +
Sbjct: 2    LRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRI 61

Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
               +SG AAD Q    + A +  L+ +   +   V AA+ ++ N+ Y+YR   LS   M+
Sbjct: 62   YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYR-EDLSAHLMV 120

Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
             GWD++  G  Y    G  +       GSG+TY YG +D+ ++  +S EE       AI 
Sbjct: 121  AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180

Query: 1378 HATHRDSYSGGVV 1416
             A +RD  SGGV+
Sbjct: 181  LAMNRDGSSGGVI 193


>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
          Length = 241

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
 Frame = +1

Query: 880  EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
            E++ GTT +A +F  GV++  DSR + GSYIA    +K+  I+  +    SG AAD Q  
Sbjct: 32   EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 91

Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
               +  +   + +   +   V  A+ L   M Y+YR   L  G ++ GWD ++G  +Y V
Sbjct: 92   ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 150

Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
               G  +       GSG++Y YG +D+ +R  ++ EE       A+  A  RD  SGGV+
Sbjct: 151  PMGGMMVRQAFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 210

Query: 1417 NMYHMKEDG 1443
             +  + E G
Sbjct: 211  RLAAIAESG 219


>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
          Length = 273

 Score = 75.5 bits (184), Expect = 9e-14
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
 Frame = +1

Query: 838  LRSLGG----DGERNVQIEMA-----------HGTTTLAFKFQHGVIVAVDSRASAGSYI 972
            L  LGG    + +RN  +E A            GTT     FQ GVI+  D+RA+  S +
Sbjct: 6    LEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 65

Query: 973  ATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNM 1152
            A     K+  I P +    +G AAD +   R+ A    L+ L  G    V+  +++L   
Sbjct: 66   ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 125

Query: 1153 MYQYRG-MGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRY 1329
            +++Y+G +G S+  ++ G D  GP LY V  +G+       + GSG   A  V++   + 
Sbjct: 126  LFRYQGHVGASL--IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQP 183

Query: 1330 DLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
            ++++E A  L   AI      D  SGG V+
Sbjct: 184  NMTLEAAQGLLVEAITAGILSDLGSGGNVD 213


>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
          Length = 277

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 48/177 (27%), Positives = 86/177 (48%)
 Frame = +1

Query: 892  GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
            GTT     ++ G+++  D+RA+ G  +A    +K+  I+P +    +G AAD     +L+
Sbjct: 43   GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102

Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
            +    L+ L  G    V  A+++L  M+++Y+G  +    ++ G D  GP LY +  +G+
Sbjct: 103  SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161

Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
                   + GSG+  A  V +   R ++  EEA  L   AI      D  SG  +++
Sbjct: 162  TDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDL 218


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,889,494
Number of extensions: 1587271
Number of successful extensions: 5580
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5554
Number of HSP's successfully gapped: 16
Length of query: 599
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 494
Effective length of database: 8,729,747
Effective search space: 4312495018
Effective search space used: 4312495018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002543
         (1798 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                        1596   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score = 1596 bits (805), Expect = 0.0
 Identities = 820/825 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273713 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 29273654

                                                                            
Query: 61       ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273653 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 29273594

                                                                            
Query: 121      cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273593 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 29273534

                                                                            
Query: 181      acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273533 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 29273474

                                                                            
Query: 241      aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273473 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 29273414

                                                                            
Query: 301      tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctatttggtt 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 29273413 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctacttggtc 29273354

                                                                            
Query: 361      cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273353 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 29273294

                                                                            
Query: 421      aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273293 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 29273234

                                                                            
Query: 481      ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattgctggtc 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29273233 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattcctggtc 29273174

                                                                            
Query: 541      cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273173 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 29273114

                                                                            
Query: 601      ccctccccttaaggcttagggctttcgctttcacttcctcctccgagagagcggacgcat 660
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29273113 ccctccccttaaggcttagggctttcgctttcacttcctcctgcgagagagcggacgcat 29273054

                                                                            
Query: 661      ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagaag 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29273053 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagcag 29272994

                                                                            
Query: 721      gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272993 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 29272934

                                                             
Query: 781      ttctctatgcgatctccggaactcgccctcccccggggaatgcag 825
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272933 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 29272889



 Score = 1596 bits (805), Expect = 0.0
 Identities = 820/825 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428821 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 29428762

                                                                            
Query: 61       ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428761 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 29428702

                                                                            
Query: 121      cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428701 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 29428642

                                                                            
Query: 181      acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428641 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 29428582

                                                                            
Query: 241      aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428581 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 29428522

                                                                            
Query: 301      tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctatttggtt 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 29428521 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctacttggtc 29428462

                                                                            
Query: 361      cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428461 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 29428402

                                                                            
Query: 421      aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428401 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 29428342

                                                                            
Query: 481      ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattgctggtc 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29428341 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattcctggtc 29428282

                                                                            
Query: 541      cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428281 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 29428222

                                                                            
Query: 601      ccctccccttaaggcttagggctttcgctttcacttcctcctccgagagagcggacgcat 660
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29428221 ccctccccttaaggcttagggctttcgctttcacttcctcctgcgagagagcggacgcat 29428162

                                                                            
Query: 661      ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagaag 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29428161 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagcag 29428102

                                                                            
Query: 721      gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428101 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 29428042

                                                             
Query: 781      ttctctatgcgatctccggaactcgccctcccccggggaatgcag 825
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428041 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 29427997



 Score =  424 bits (214), Expect = e-116
 Identities = 254/266 (95%), Gaps = 1/266 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1421     tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 1480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270294 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 29270235

                                                                            
Query: 1481     tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 1540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270234 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 29270175

                                                                            
Query: 1541     tgaggaagccgggcctactcagggacctggaccagttcaggccccaaaagaaagagggg- 1599
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 29270174 tgaggaagccgggcctactcagggacctggaccagttcaggccccagaagaaagaggggc 29270115

                                                                            
Query: 1600     cttacgtgacccagagggaatgaaccattggtccctgggaggcaaggcggaatttatacc 1659
                || |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| | 
Sbjct: 29270114 ctaacgtgacccagagggaatgaaccagtggtccctgggaggcagggcggagtttatcct 29270055

                                          
Query: 1660     cttttgtagaatctgcttcaatggag 1685
                 || |||||  |||||||||||||||
Sbjct: 29270054 tttgtgtagtctctgcttcaatggag 29270029



 Score =  424 bits (214), Expect = e-116
 Identities = 254/266 (95%), Gaps = 1/266 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1421     tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 1480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425402 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 29425343

                                                                            
Query: 1481     tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 1540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425342 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 29425283

                                                                            
Query: 1541     tgaggaagccgggcctactcagggacctggaccagttcaggccccaaaagaaagagggg- 1599
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 29425282 tgaggaagccgggcctactcagggacctggaccagttcaggccccagaagaaagaggggc 29425223

                                                                            
Query: 1600     cttacgtgacccagagggaatgaaccattggtccctgggaggcaaggcggaatttatacc 1659
                || |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| | 
Sbjct: 29425222 ctaacgtgacccagagggaatgaaccagtggtccctgggaggcagggcggagtttatcct 29425163

                                          
Query: 1660     cttttgtagaatctgcttcaatggag 1685
                 || |||||  |||||||||||||||
Sbjct: 29425162 tttgtgtagtctctgcttcaatggag 29425137



 Score =  410 bits (207), Expect = e-111
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1214     agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 1273
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270746 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 29270687

                                                                            
Query: 1274     ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 1333
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270686 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 29270627

                                                                            
Query: 1334     ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 1393
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270626 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 29270567

                                           
Query: 1394     acagctattctggaggcgttgtcaata 1420
                |||||||||||||||||||||||||||
Sbjct: 29270566 acagctattctggaggcgttgtcaata 29270540



 Score =  410 bits (207), Expect = e-111
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1214     agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 1273
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425854 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 29425795

                                                                            
Query: 1274     ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 1333
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425794 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 29425735

                                                                            
Query: 1334     ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 1393
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425734 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 29425675

                                           
Query: 1394     acagctattctggaggcgttgtcaata 1420
                |||||||||||||||||||||||||||
Sbjct: 29425674 acagctattctggaggcgttgtcaata 29425648



 Score =  297 bits (150), Expect = 1e-77
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                            
Query: 824      agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 883
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272108 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 29272049

                                                                            
Query: 884      tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 943
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272048 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 29271989

                                              
Query: 944      attctcgggcctcggccgggagttacattg 973
                ||||||||||||||||||||||||||||||
Sbjct: 29271988 attctcgggcctcggccgggagttacattg 29271959



 Score =  297 bits (150), Expect = 1e-77
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                            
Query: 824      agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 883
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29427216 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 29427157

                                                                            
Query: 884      tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 943
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29427156 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 29427097

                                              
Query: 944      attctcgggcctcggccgggagttacattg 973
                ||||||||||||||||||||||||||||||
Sbjct: 29427096 attctcgggcctcggccgggagttacattg 29427067



 Score =  266 bits (134), Expect = 4e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1083     caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 1142
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271246 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 29271187

                                                                            
Query: 1143     ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 1202
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271186 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 29271127

                              
Query: 1203     ctgggacaagaagg 1216
                ||||||||||||||
Sbjct: 29271126 ctgggacaagaagg 29271113



 Score =  266 bits (134), Expect = 4e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1083     caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 1142
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426354 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 29426295

                                                                            
Query: 1143     ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 1202
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426294 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 29426235

                              
Query: 1203     ctgggacaagaagg 1216
                ||||||||||||||
Sbjct: 29426234 ctgggacaagaagg 29426221



 Score =  212 bits (107), Expect = 5e-52
 Identities = 113/115 (98%)
 Strand = Plus / Minus

                                                                            
Query: 973      gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 1032
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271789 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 29271730

                                                                       
Query: 1033     ggctgtgcggcggactgtcagtattgggagcgtctgctggccaaggagtgcaggt 1087
                |||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271729 ggctctgcggcagactgtcagtattgggagcgtctgctggccaaggagtgcaggt 29271675



 Score =  212 bits (107), Expect = 5e-52
 Identities = 113/115 (98%)
 Strand = Plus / Minus

                                                                            
Query: 973      gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 1032
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426897 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 29426838

                                                                       
Query: 1033     ggctgtgcggcggactgtcagtattgggagcgtctgctggccaaggagtgcaggt 1087
                |||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426837 ggctctgcggcagactgtcagtattgggagcgtctgctggccaaggagtgcaggt 29426783


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,358,233
Number of extensions: 411
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 12
Length of query: 1798
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1776
Effective length of database: 2,808,408,574
Effective search space: 4987733627424
Effective search space used: 4987733627424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)