Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo... 513 e-145
Alignment gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo... 317 3e-86
Alignment gi|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus]. 236 5e-62
Alignment gi|NP_001029560.1| proteasome subunit beta type-9 precursor [Bo... 98 3e-20
Alignment gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo... 97 5e-20
Alignment gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo... 76 9e-14
Alignment gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B... 76 1e-13
Alignment gi|NP_001033628.1| proteasome subunit beta type-1 precursor [Bo... 57 7e-08
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 54 6e-07
Alignment gi|NP_001029438.1| proteasome subunit beta type-4 precursor [Bo... 53 8e-07
>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
Length = 276
Score = 513 bits (1320), Expect = e-145
Identities = 249/275 (90%), Positives = 261/275 (94%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MALLDVCGA R Q+ DWA P A SRQRSDPGHY FS+RSPE ALPRGMQPTEF RSLGG+
Sbjct: 1 MALLDVCGATRGQRGDWAVPLAGSRQRSDPGHYGFSLRSPEFALPRGMQPTEFFRSLGGN 60
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
GE VQIEMAHGTTTLAFKFQHGVIVAVDSRASAG+YI TL+VNKVIEINPYLLGTMSGC
Sbjct: 61 GESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGTMSGC 120
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121 AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKG 180
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
PGLYYV+++GTRLSGNMFSTGSGN++AYGVMDSG+R DLSIEEAYDLGRRAIVHATHRDS
Sbjct: 181 PGLYYVNDSGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDS 240
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS
Sbjct: 241 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 275
>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
Length = 263
Score = 317 bits (811), Expect = 3e-86
Identities = 146/206 (70%), Positives = 179/206 (86%)
Frame = +1
Query: 874 QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
+IE+ HGTTTLAFKF+HGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC
Sbjct: 53 RIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 112
Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
+WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 113 FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 172
Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
VD G R+SG FS GSG+ YAYGVMD G+ YDL +EEAYDL RRAI AT+RD+YSGG
Sbjct: 173 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGS 232
Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQY 1491
V++YH++EDGW++V S +V+DL +Y
Sbjct: 233 VSLYHVREDGWIRVSSDNVADLHDKY 258
>ref|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].
Length = 289
Score = 236 bits (602), Expect = 5e-62
Identities = 126/265 (47%), Positives = 166/265 (62%), Gaps = 2/265 (0%)
Frame = +1
Query: 679 MALLDVCG--APRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLG 852
MAL DVC AP Q+ P A S A+PRG P FL++ G
Sbjct: 1 MALQDVCKWQAPDTQETSPHLPQAGS-----------------WAVPRGWDPQAFLQTHG 43
Query: 853 GDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMS 1032
+AHGTTTLAF+F+HGVI A D+R+S G+Y+ KVI ++ +LLGT S
Sbjct: 44 P--------RLAHGTTTLAFRFRHGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTS 95
Query: 1033 GCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDK 1212
G +ADC W R+L +E RL LR G SV+ A+KLLS MM +YRG+ L + + +CGWD+
Sbjct: 96 GTSADCVTWYRVLQRELRLRALREGQLPSVAGAAKLLSVMMSRYRGLDLCVATALCGWDR 155
Query: 1213 KGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHR 1392
GP L+YV +GT L GN+FS GSG+ YAYGV+D G+RYD+S +EAY L R A+ HAT R
Sbjct: 156 SGPALFYVYSDGTCLQGNIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATRR 215
Query: 1393 DSYSGGVVNMYHMKEDGWVKVESTD 1467
D+YSGG V+++H++E GW V D
Sbjct: 216 DAYSGGSVDLFHVRESGWEYVSRHD 240
>ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus].
Length = 219
Score = 97.8 bits (242), Expect = 3e-20
Identities = 63/193 (32%), Positives = 100/193 (51%)
Frame = +1
Query: 838 LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
LR+ +G+ E+ GTT +A +F GV+V DSR SAG + +K+ ++ ++
Sbjct: 2 LRTGAPNGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHI 61
Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
+SG AAD Q + A + L+ + + V AA+ ++ N+ Y+YR LS M+
Sbjct: 62 YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYR-EDLSAHLMV 120
Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
GWD++ G Y +G + GSG+TY YG +D+ ++ +S EE AI
Sbjct: 121 AGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 1378 HATHRDSYSGGVV 1416
A RD SGGV+
Sbjct: 181 LAMKRDGSSGGVI 193
>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
Length = 239
Score = 97.1 bits (240), Expect = 5e-20
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ + SG AAD Q
Sbjct: 30 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
+ + + + + V A+ L M Y+YR L G +I GWD ++G +Y V
Sbjct: 90 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + GSG++Y YG +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 149 PMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208
Query: 1417 NMYHMKEDG 1443
+ + E G
Sbjct: 209 RLAAIAEPG 217
>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
Length = 277
Score = 76.3 bits (186), Expect = 9e-14
Identities = 49/177 (27%), Positives = 86/177 (48%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT ++ G+++ D+RA+ G +A +K+ I+P + +G AAD +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
+ L+ L G V A+++L M+++Y+G + ++ G D GP LY + +G+
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161
Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
+ GSG+ A V + R D+ EEA L AI D SG +++
Sbjct: 162 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218
>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
Length = 273
Score = 75.9 bits (185), Expect = 1e-13
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT FQ GVI+ D+RA+ S +A K+ I P + +G AAD + R+
Sbjct: 39 GTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMA 98
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
A L+ L G V+ +++L +++Y+G +G S+ ++ G D GP LY V +G
Sbjct: 99 ASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASL--IVGGVDFTGPQLYSVHPHG 156
Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
+ + GSG A V++ + ++++E A +L AI D SGG V+
Sbjct: 157 SYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVD 213
>ref|NP_001033628.1| proteasome subunit beta type-1 precursor [Bos taurus].
Length = 241
Score = 56.6 bits (135), Expect = 7e-08
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Frame = +1
Query: 889 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95
Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
+ ++Y N ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 96 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 155
Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
G+ + + GS N + M + LS++ A L + + A RD
Sbjct: 156 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 215
Query: 1399 YSGGVVNMYHMKEDG 1443
Y+G + + + ++G
Sbjct: 216 YTGDALKVCIVTKEG 230
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 53.5 bits (127), Expect = 6e-07
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
G+T + + GV +AV+ R ++ + + K++EI+ ++ MSG AD +
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
E + ++ + ++V + ++ +SN+ Q+ G+M G D+KGP
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
L+++D +GT + + + GS + A + + ++++EA
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_001029438.1| proteasome subunit beta type-4 precursor [Bos taurus].
Length = 264
Score = 53.1 bits (126), Expect = 8e-07
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
Frame = +1
Query: 844 SLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLG 1023
+L G Q M GT+ L KF+ GV++A D S GS +++++ +N +
Sbjct: 37 ALYGSPITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTML 96
Query: 1024 TMSGCAADCQYWERLLAK-ECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMI 1197
SG AD QY +++L + L +G S A L+ MY R M +M+
Sbjct: 97 GASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMV 156
Query: 1198 CGWDKKGPG-LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRR 1368
G G L YVD G +TG G A ++ + LS EA +L R
Sbjct: 157 IGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVER 216
Query: 1369 AIVHATHRDSYSGGVVNMYHMKEDGWVKVE 1458
+ +RD+ S + + E G V++E
Sbjct: 217 CMRVLYYRDARSYNRFQIATVTEKG-VEIE 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,867,500
Number of extensions: 2411903
Number of successful extensions: 8731
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8686
Number of HSP's successfully gapped: 14
Length of query: 599
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,107,870
Effective search space: 6926964170
Effective search space used: 6926964170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 473 e-133
Alignment gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit... 321 2e-87
Alignment gi|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit... 242 7e-64
Alignment gi|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus ... 103 4e-22
Alignment gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t... 99 1e-20
Alignment gi|XP_546869.2| PREDICTED: similar to proteasome beta 10 subuni... 72 2e-12
Alignment gi|XP_532275.2| PREDICTED: similar to Proteasome subunit beta t... 57 8e-08
Alignment gi|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha ... 54 6e-07
Alignment gi|XP_537658.1| PREDICTED: similar to Proteasome subunit beta t... 52 1e-06
Alignment gi|XP_533057.2| PREDICTED: similar to Proteasome subunit beta t... 52 2e-06
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 473 bits (1217), Expect = e-133
Identities = 225/275 (81%), Positives = 256/275 (93%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MALL+VCGAPR ++ A PA S+ RSDPGHYSFS+R+PELA+PRGMQPTEF +SLG +
Sbjct: 1 MALLEVCGAPRGLRKACAVPALGSQLRSDPGHYSFSLRAPELAVPRGMQPTEFFQSLGEN 60
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
GE+N++ EM HGTTTLAFKFQHGVIVAVDSRA+AG+YI++ RVNKVIEINP LLGTMSGC
Sbjct: 61 GEKNIRKEMVHGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGC 120
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNM+YQYRGM LSMGSMICGWDKKG
Sbjct: 121 AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKG 180
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
PGLYYVD+NGTRLSGNMFSTGSG+TYAYGVMDSG++ LS EEAY+LGRRAI +ATHRDS
Sbjct: 181 PGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDS 240
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
YSGG++NMYHMKEDGWVKVESTDV++L+HQY+EA+
Sbjct: 241 YSGGIINMYHMKEDGWVKVESTDVNELLHQYQEAN 275
>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 263
Score = 321 bits (822), Expect = 2e-87
Identities = 148/205 (72%), Positives = 178/205 (86%)
Frame = +1
Query: 877 IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
IEM HGTTTLAFKFQHGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC +
Sbjct: 54 IEMLHGTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113
Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYV 1236
WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYYV
Sbjct: 114 WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 173
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
D G R+SG FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI AT+RD+YSGG V
Sbjct: 174 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233
Query: 1417 NMYHMKEDGWVKVESTDVSDLMHQY 1491
N+YH++EDGW++V S +V+DL +Y
Sbjct: 234 NLYHVREDGWIRVSSDNVADLHDKY 258
>ref|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 282
Score = 242 bits (618), Expect = 7e-64
Identities = 128/273 (46%), Positives = 170/273 (62%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MAL DVC W P + P +S+ P G P FLR G
Sbjct: 1 MALQDVC--------KWQAPDTQGLSPHLPPAGGWSV-------PLGCDPQTFLRLHGP- 44
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
+AHGTTTLAF+F+HGVI A D+R+S G+Y+A K+I ++ +LLGT SG
Sbjct: 45 -------RLAHGTTTLAFRFRHGVIAAADTRSSCGNYVACPASRKIIPVHQHLLGTTSGT 97
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
+ADC W R+L +E RL LR G SV+ A++LLS MM YRG+ L + + +CGWD+ G
Sbjct: 98 SADCAAWYRVLRRELRLRALREGRLPSVAGAARLLSAMMSCYRGLDLCVATALCGWDRSG 157
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
P L+YV +GTRL GN+FS GSG+ YAYGV+D G+RYDLS +EAY L RRA+ HATHRD+
Sbjct: 158 PALFYVCSDGTRLPGNVFSVGSGSPYAYGVLDRGYRYDLSPQEAYALARRAVAHATHRDA 217
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYRE 1497
YSGG V+++H++EDGW V D L + ++
Sbjct: 218 YSGGSVDLFHVREDGWEYVSRDDACVLYSELQK 250
>ref|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus familiaris].
Length = 209
Score = 103 bits (258), Expect = 4e-22
Identities = 63/181 (34%), Positives = 95/181 (52%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E+ GTT +A +F GV+V DSR SAG + NK+ ++ ++ +SG AAD Q
Sbjct: 6 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAADAQAM 65
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
+ A + L+ L + V AA+ ++ N+ Y+YR LS MI GWD++ G Y
Sbjct: 66 ADMAAYQLELHGLELEEPPLVLAAANVVRNISYKYR-EDLSAHLMIAGWDRRDGGQVYGT 124
Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
G GSG+TY YG +D+ ++ +S EE AI A +RD SGGV++
Sbjct: 125 MGGMLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRSFTTNAIALAMNRDGSSGGVIH 184
Query: 1420 M 1422
+
Sbjct: 185 L 185
>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
(Proteasome delta chain) (Macropain delta chain)
(Multicatalytic endopeptidase complex delta chain)
(Proteasome subunit Y) [Canis familiaris].
Length = 239
Score = 99.4 bits (246), Expect = 1e-20
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E++ GTT +A +F+ GV++ DSR + GSYIA +K+ I+ + SG AAD Q
Sbjct: 30 EVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
+ + + + + V A+ L M Y+YR L G +I GWD ++G +Y V
Sbjct: 90 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + + GSG++Y YG +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 149 PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208
Query: 1417 NMYHMKEDG 1443
+ + E G
Sbjct: 209 RLAAIAESG 217
>ref|XP_546869.2| PREDICTED: similar to proteasome beta 10 subunit proprotein [Canis
familiaris].
Length = 305
Score = 71.6 bits (174), Expect = 2e-12
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Frame = +1
Query: 874 QIEMAH--GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINP-----YLLGTMS 1032
+I AH GTT F+ GVI+ D+RA+ S + K+ I P L +
Sbjct: 58 RIPRAHKTGTTIAGLVFRDGVILGADTRATNDSVVMDKNCEKIHFIAPNEPPLVLSCCGA 117
Query: 1033 GCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWD 1209
G AAD + R+ A L+ L G V+ ++LL +++YRG +G S+ ++ G D
Sbjct: 118 GVAADAEMTTRMAASNMELHSLSTGREPRVTTVTRLLRQTLFRYRGHVGASL--LVGGVD 175
Query: 1210 KKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATH 1389
GP LY V +G+ + GSG A V++ + ++++E A +L AI
Sbjct: 176 FSGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQELLVEAITAGIL 235
Query: 1390 RDSYSGGVVN 1419
D SGG V+
Sbjct: 236 GDLGSGGSVD 245
>ref|XP_532275.2| PREDICTED: similar to Proteasome subunit beta type 1 (Proteasome
component C5) (Macropain subunit C5) (Multicatalytic
endopeptidase complex subunit C5) (Proteasome gamma
chain) [Canis familiaris].
Length = 241
Score = 56.6 bits (135), Expect = 8e-08
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Frame = +1
Query: 889 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95
Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
+ ++Y N ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 96 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 155
Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
G+ + + GS N + M + LS++ A L + + A RD
Sbjct: 156 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 215
Query: 1399 YSGGVVNMYHMKEDG 1443
Y+G + + + ++G
Sbjct: 216 YTGDALRICIVTKEG 230
>ref|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
zeta chain) (Macropain zeta chain) (Multicatalytic
endopeptidase complex zeta chain) isoform 1 [Canis
familiaris].
Length = 241
Score = 53.5 bits (127), Expect = 6e-07
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
G+T + + GV +AV+ R ++ + + K++EI+ ++ MSG AD +
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
E + ++ + ++V + ++ +SN+ Q+ G+M G D+KGP
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
L+++D +GT + + + GS + A + + ++++EA
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|XP_537658.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome
theta chain) (Proteasome chain 13) (Proteasome component
C10-II) [Canis familiaris].
Length = 205
Score = 52.4 bits (124), Expect = 1e-06
Identities = 44/187 (23%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
Frame = +1
Query: 889 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
+G +A K ++ V +A D R + + T K+ + L ++G A D Q +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG--PGLYYVDE 1242
L LY L+ G +I +++N++Y+ R +I G D K P + +D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 1243 NGTRLSGNMFS-TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
G + + F +G+ + YG+ +S ++ E ++ +A+++A RD+ SG V
Sbjct: 127 IGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVI 186
Query: 1420 MYHMKED 1440
++ +++D
Sbjct: 187 VHIIEKD 193
>ref|XP_533057.2| PREDICTED: similar to Proteasome subunit beta type 4 precursor
(Proteasome beta chain) (Macropain beta chain)
(Multicatalytic endopeptidase complex beta chain)
(Proteasome chain 3) [Canis familiaris].
Length = 311
Score = 52.0 bits (123), Expect = 2e-06
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 5/200 (2%)
Frame = +1
Query: 874 QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
Q M GT+ L KF+ GV++A D S GS +++++ +N + SG AD Q
Sbjct: 94 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQ 153
Query: 1054 YWERLLAK-ECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPG- 1224
Y +++L + L +G S A L+ MY R M +M+ G G
Sbjct: 154 YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESF 213
Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRRAIVHATHRDS 1398
L YVD G +TG G A ++ + LS EA +L R + +RD+
Sbjct: 214 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDA 273
Query: 1399 YSGGVVNMYHMKEDGWVKVE 1458
S + + E G V++E
Sbjct: 274 RSYNRFQIATVTEKG-VEIE 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,359,505
Number of extensions: 2479299
Number of successful extensions: 9596
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9518
Number of HSP's successfully gapped: 11
Length of query: 599
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 490
Effective length of database: 15,240,880
Effective search space: 7468031200
Effective search space used: 7468031200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr... 511 e-144
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 437 e-122
Alignment gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ... 320 4e-87
Alignment gi|NP_001093250.1| proteasome subunit beta type-11 precursor [H... 244 1e-64
Alignment gi|NP_001124197.1| proteasome subunit beta type-5 isoform 2 [Ho... 240 4e-63
Alignment gi|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Ho... 193 5e-49
Alignment gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ... 99 2e-20
Alignment gi|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo... 91 5e-18
Alignment gi|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo... 77 5e-14
Alignment gi|NP_002792.1| proteasome subunit beta type-10 precursor [Homo... 75 2e-13
>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo sapiens].
Length = 276
Score = 511 bits (1315), Expect = e-144
Identities = 249/275 (90%), Positives = 261/275 (94%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MALLDVCGAPR Q+ + A P A S +RSDPGHYSFSMRSPELALPRGMQPTEF +SLGGD
Sbjct: 1 MALLDVCGAPRGQRPESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGD 60
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
GERNVQIEMAHGTTTLAFKFQHGVI AVDSRASAGSYI+ LRVNKVIEINPYLLGTMSGC
Sbjct: 61 GERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGC 120
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121 AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKG 180
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
PGLYYVDE+GTRLSGNMFSTGSGNTYAYGVMDSG+R +LS EEAYDLGRRAI +ATHRDS
Sbjct: 181 PGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDS 240
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
YSGGVVNMYHMKEDGWVKVESTDVSDL+HQYREA+
Sbjct: 241 YSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREAN 275
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo sapiens].
Length = 272
Score = 437 bits (1123), Expect = e-122
Identities = 211/229 (92%), Positives = 222/229 (96%)
Frame = +1
Query: 817 GMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKV 996
G++PTEF +SLGGDGERNVQIEMAHGTTTLAFKFQHGVI AVDSRASAGSYI+ LRVNKV
Sbjct: 43 GLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKV 102
Query: 997 IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMG 1176
IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMG
Sbjct: 103 IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMG 162
Query: 1177 LSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYD 1356
LSMGSMICGWDKKGPGLYYVDE+GTRLSGNMFSTGSGNTYAYGVMDSG+R +LS EEAYD
Sbjct: 163 LSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYD 222
Query: 1357 LGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
LGRRAI +ATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL+HQYREA+
Sbjct: 223 LGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREAN 271
>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
Length = 263
Score = 320 bits (819), Expect = 4e-87
Identities = 147/205 (71%), Positives = 178/205 (86%)
Frame = +1
Query: 877 IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
IEM HGTTTLAFKF+HGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC +
Sbjct: 54 IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113
Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYV 1236
WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYYV
Sbjct: 114 WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 173
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
D G R+SG FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI AT+RD+YSGG V
Sbjct: 174 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233
Query: 1417 NMYHMKEDGWVKVESTDVSDLMHQY 1491
N+YH++EDGW++V S +V+DL +Y
Sbjct: 234 NLYHVREDGWIRVSSDNVADLHEKY 258
>ref|NP_001093250.1| proteasome subunit beta type-11 precursor [Homo sapiens].
Length = 300
Score = 244 bits (624), Expect = 1e-64
Identities = 128/263 (48%), Positives = 169/263 (64%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MAL DVC W P + P R+ A+PRG P FL+ G
Sbjct: 1 MALQDVC--------KWQSPDTQGPSPHLP-------RAGGWAVPRGCDPQTFLQIHGP- 44
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
+AHGTTTLAF+F+HGVI A D+R+S GSY+A KVI ++ +LLGT SG
Sbjct: 45 -------RLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGT 97
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
+ADC W R+L +E RL LR G SV++A+KLLS MM QYRG+ L + + +CGWD+ G
Sbjct: 98 SADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSG 157
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
P L+YV +GTRL G++FS GSG+ YAYGV+D G+RYD+S +EAY L R A+ HATHRD+
Sbjct: 158 PELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDA 217
Query: 1399 YSGGVVNMYHMKEDGWVKVESTD 1467
YSGG V+++H++E GW V +D
Sbjct: 218 YSGGSVDLFHVRESGWEHVSRSD 240
>ref|NP_001124197.1| proteasome subunit beta type-5 isoform 2 [Homo sapiens].
Length = 160
Score = 240 bits (612), Expect = 4e-63
Identities = 106/155 (68%), Positives = 133/155 (85%)
Frame = +1
Query: 1027 MSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGW 1206
M+G AADC +WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGW
Sbjct: 1 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
Query: 1207 DKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHAT 1386
DK+GPGLYYVD G R+SG FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI AT
Sbjct: 61 DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
Query: 1387 HRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQY 1491
+RD+YSGG VN+YH++EDGW++V S +V+DL +Y
Sbjct: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKY 155
>ref|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Homo sapiens].
Length = 203
Score = 193 bits (490), Expect = 5e-49
Identities = 90/115 (78%), Positives = 106/115 (92%)
Frame = +1
Query: 877 IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQY 1056
IEM HGTTTLAFKF+HGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC +
Sbjct: 54 IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113
Query: 1057 WERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGP 1221
WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GP
Sbjct: 114 WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
Length = 239
Score = 98.6 bits (244), Expect = 2e-20
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ + SG AAD Q
Sbjct: 30 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
+ + + + + V A+ L M Y+YR L G +I GWD ++G +Y V
Sbjct: 90 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 148
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + + GSG++Y YG +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 149 PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 208
Query: 1417 NMYHMKEDG 1443
+ + E G
Sbjct: 209 RLAAIAESG 217
>ref|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo sapiens].
Length = 219
Score = 90.5 bits (223), Expect = 5e-18
Identities = 58/179 (32%), Positives = 91/179 (50%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E+ GTT +A +F GV++ DSR SAG + +K+ ++ + +SG AAD Q
Sbjct: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
+ A + L+ + + V AA+ ++ N+ Y+YR LS M+ GWD++ G Y
Sbjct: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGT 134
Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G GSG+T+ YG +D+ ++ +S EE AI A RD SGGV+
Sbjct: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193
>ref|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo sapiens].
Length = 277
Score = 77.0 bits (188), Expect = 5e-14
Identities = 49/177 (27%), Positives = 87/177 (49%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT ++ G+++ D+RA+ G +A +K+ I+P + +G AAD +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
+ L+ L G V A+++L M+++Y+G + ++ G D GP LY + +G+
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161
Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
+ GSG+ A V + R D+ EEA +L AI D SG +++
Sbjct: 162 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 218
>ref|NP_002792.1| proteasome subunit beta type-10 precursor [Homo sapiens].
Length = 273
Score = 75.5 bits (184), Expect = 2e-13
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT FQ GVI+ D+RA+ S +A K+ I P + +G AAD + R++
Sbjct: 39 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMV 98
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
A + L+ L G V+ +++L +++Y+G +G S+ ++ G D GP LY V +G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTGPQLYGVHPHG 156
Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
+ + GSG A V++ + ++++E A L A+ D SGG V+
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVD 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,494,707
Number of extensions: 2420648
Number of successful extensions: 8884
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8848
Number of HSP's successfully gapped: 15
Length of query: 599
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,737,052
Effective search space: 7235892532
Effective search space used: 7235892532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 490 e-138
Alignment gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus]. 322 6e-88
Alignment gi|NP_780413.1| proteasome subunit beta type-11 precursor [Mus ... 234 2e-61
Alignment gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m... 100 6e-21
Alignment gi|NP_038613.1| proteasome subunit beta type-9 [Mus musculus]. 91 4e-18
Alignment gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m... 76 8e-14
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 74 4e-13
Alignment gi|NP_035315.1| proteasome subunit beta type-1 precursor [Mus m... 55 1e-07
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 54 5e-07
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 54 5e-07
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 490 bits (1261), Expect = e-138
Identities = 238/276 (86%), Positives = 257/276 (93%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MALLD+CGA R Q+ +WA A S RSDPGHYSFS ++PELALPRGMQPT FLRS GGD
Sbjct: 1 MALLDLCGAARGQRPEWAALDAGSGGRSDPGHYSFSAQAPELALPRGMQPTAFLRSFGGD 60
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
ERNVQIEMAHGTTTLAFKFQHGVIVAVDSRA+AGSYI++LR+NKVIEINPYLLGTMSGC
Sbjct: 61 QERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGC 120
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
AADCQYWERLLAKECRLYYLRNG+RISVSAASKLLSNMM QYRGMGLSMGSMICGWDKKG
Sbjct: 121 AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKG 180
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
PGLYYVD+NGTRLSG MFSTGSGNTYAYGVMDSG+R DLS EEAYDLGRRAI +ATHRD+
Sbjct: 181 PGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDN 240
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
YSGGVVNMYHMKEDGWVKVES+DVSDL+++Y EA+L
Sbjct: 241 YSGGVVNMYHMKEDGWVKVESSDVSDLLYKYGEAAL 276
>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
Length = 264
Score = 322 bits (825), Expect = 6e-88
Identities = 149/211 (70%), Positives = 180/211 (85%)
Frame = +1
Query: 874 QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
+IEM HGTTTLAFKF HGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC
Sbjct: 53 RIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 112
Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
+WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 113 FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 172
Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
VD G R+SG FS GSG+ YAYGVMD G+ YDL +EEAYDL RRAI AT+RD+YSGG
Sbjct: 173 VDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGA 232
Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
VN+YH++EDGW++V S +V+DL +Y S+
Sbjct: 233 VNLYHVREDGWIRVSSDNVADLHDKYSSVSV 263
>ref|NP_780413.1| proteasome subunit beta type-11 precursor [Mus musculus].
Length = 302
Score = 234 bits (596), Expect = 2e-61
Identities = 115/232 (49%), Positives = 156/232 (67%)
Frame = +1
Query: 805 ALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLR 984
A+PRG P FL+ G +AHGTTTLAF+F+HGVI A D+R+S GSY+A
Sbjct: 28 AVPRGCDPQTFLQIHGP--------RLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPA 79
Query: 985 VNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQY 1164
KVI ++ LLGT SG +ADC W R+L +E RL LR G SV+ +KLL+ MM Y
Sbjct: 80 SRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCY 139
Query: 1165 RGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIE 1344
RG+ L + + +CGWD GP L+YV +GT L G++FS GSG+ YAYGV+D G+ YD++I+
Sbjct: 140 RGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQ 199
Query: 1345 EAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREA 1500
EAY L R A+ HATHRD+YSGG V+++H++E GW V +D L + ++A
Sbjct: 200 EAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACVLYRELQKA 251
>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
Length = 238
Score = 99.8 bits (247), Expect = 6e-21
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ ++ SG AAD Q
Sbjct: 29 EVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
+ + + + + V A+ L M Y+YR L G +I GWD ++G +Y V
Sbjct: 89 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSV 147
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + + GSG++Y YG +D+ +R ++ +E A+ A RD SGGV+
Sbjct: 148 PMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVI 207
Query: 1417 NMYHMKEDG 1443
+ ++E G
Sbjct: 208 RLAAIQESG 216
>ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].
Length = 219
Score = 90.5 bits (223), Expect = 4e-18
Identities = 57/179 (31%), Positives = 93/179 (51%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E+ GTT +A +F GV+V DSR SAG+ + +K+ ++ ++ +SG AAD Q
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAI 75
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 1239
+ A + L+ L + V AA+ ++ N+ Y+YR L ++ GWD+ G Y
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQCEGGQVYGT 134
Query: 1240 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + GSG++Y YG +D+ ++ ++ EE AI A +RD SGGV+
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVI 193
>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
Length = 277
Score = 76.3 bits (186), Expect = 8e-14
Identities = 49/177 (27%), Positives = 86/177 (48%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT ++ G+++ D+RA+ G +A +K+ I+P + +G AAD +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
+ L+ L G V A+++L M+++Y+G + ++ G D GP LY + +G+
Sbjct: 103 SSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161
Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
+ GSG+ A V + R D+ EEA L AI D SG +++
Sbjct: 162 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 218
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 73.9 bits (180), Expect = 4e-13
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT F+ GVI+ D+RA+ S +A K+ I P + +G AAD + R+
Sbjct: 39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMA 98
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMICGWDKKGPGLYYVDENG 1248
A + L+ L G V+ +++L +++Y+G +G S+ ++ G D GP LY V +G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--VVGGVDLNGPQLYEVHPHG 156
Query: 1249 TRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
+ + GSG A +++ + ++++E A +L AI D SGG V+
Sbjct: 157 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 213
>ref|NP_035315.1| proteasome subunit beta type-1 precursor [Mus musculus].
Length = 240
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Frame = +1
Query: 889 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 1068
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 94
Query: 1069 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 1245
+ ++Y N ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 95 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 154
Query: 1246 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
G+ + + GS N + M + L+++ A L + + A RD
Sbjct: 155 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDV 214
Query: 1399 YSGGVVNMYHMKEDG 1443
Y+G + + + ++G
Sbjct: 215 YTGDALRICIVTKEG 229
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 53.5 bits (127), Expect = 5e-07
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
G+T + + GV +AV+ R ++ + + K++EI+ ++ MSG AD +
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
E + ++ + ++V + ++ +SN+ Q+ G+M G D+KGP
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
L+++D +GT + + + GS + A + + ++++EA
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 53.5 bits (127), Expect = 5e-07
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
G+T + + GV +AV+ R ++ + + K++EI+ ++ MSG AD +
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSM---------ICGWDKKGPG 1224
E + ++ + ++V + ++ +SN+ Q+ G+M G D+KGP
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 1225 LYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEA 1350
L+++D +GT + + + GS + A + + ++++EA
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,987,430
Number of extensions: 2002271
Number of successful extensions: 7221
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7183
Number of HSP's successfully gapped: 13
Length of query: 599
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 492
Effective length of database: 12,403,707
Effective search space: 6102623844
Effective search space used: 6102623844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S... 561 e-160
Alignment gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa]. 512 e-145
Alignment gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S... 320 2e-87
Alignment gi|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-l... 237 2e-62
Alignment gi|XP_003354003.1| PREDICTED: LOW QUALITY PROTEIN: proteasome s... 203 2e-52
Alignment gi|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-li... 98 2e-20
Alignment gi|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa]. 98 2e-20
Alignment gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa]. 97 3e-20
Alignment gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa]. 75 9e-14
Alignment gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su... 75 1e-13
>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
Length = 276
Score = 561 bits (1446), Expect = e-160
Identities = 274/276 (99%), Positives = 275/276 (99%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 858
MALLDVCGAPRAQ+EDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD
Sbjct: 1 MALLDVCGAPRAQQEDWAFPAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGD 60
Query: 859 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGC 1038
GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSG
Sbjct: 61 GERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGS 120
Query: 1039 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 1218
AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG
Sbjct: 121 AADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKG 180
Query: 1219 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 1398
PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS
Sbjct: 181 PGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 240
Query: 1399 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 1506
YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL
Sbjct: 241 YSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREASL 276
>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
Length = 260
Score = 512 bits (1319), Expect = e-145
Identities = 250/257 (97%), Positives = 252/257 (98%)
Frame = +1
Query: 736 PAAESRQRSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK 915
PAA R SDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK
Sbjct: 4 PAAMGRDCSDPGHYSFSMRSPELALPRGMQPTEFLRSLGGDGERNVQIEMAHGTTTLAFK 63
Query: 916 FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY 1095
FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY
Sbjct: 64 FQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY 123
Query: 1096 LRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS 1275
LRNG+RISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS
Sbjct: 124 LRNGERISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFS 183
Query: 1276 TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV 1455
TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV
Sbjct: 184 TGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKV 243
Query: 1456 ESTDVSDLMHQYREASL 1506
ESTDVSDL+HQYREA L
Sbjct: 244 ESTDVSDLLHQYREAIL 260
>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
Length = 275
Score = 320 bits (820), Expect = 2e-87
Identities = 148/210 (70%), Positives = 181/210 (86%)
Frame = +1
Query: 874 QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
+IEM HGTTTLAFKF HGVIVA DSRA+AG+YIA+ V KVIEINPYLLGTM+G AADC
Sbjct: 65 RIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCS 124
Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
+WERLLA++CR+Y LRN +RISV+AASKLL+NM+YQY+GMGLSMG+MICGWDK+GPGLYY
Sbjct: 125 FWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY 184
Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
VD G R+SG FS GSG+ YAYGVMD G+ YDL +E+AYDL RRAI AT+RD+YSGG
Sbjct: 185 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGS 244
Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
VN+YH++EDGW++V S +V+DL +Y E++
Sbjct: 245 VNLYHVREDGWIRVSSDNVADLHDKYSEST 274
>ref|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-like [Sus scrofa].
Length = 291
Score = 237 bits (604), Expect = 2e-62
Identities = 126/276 (45%), Positives = 172/276 (62%), Gaps = 1/276 (0%)
Frame = +1
Query: 679 MALLDVCGAPRAQKEDWAFPAAESRQRSDP-GHYSFSMRSPELALPRGMQPTEFLRSLGG 855
MAL DVC W Q DP G + ++ A+PRG P FL++ G
Sbjct: 1 MALQDVC--------QW--------QALDPQGASPYLPQAGAWAVPRGWDPQTFLQTHGP 44
Query: 856 DGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSG 1035
+AHGTTTLAF+F+ GVI A D+R+S G+Y+ KVI ++ +LLGT SG
Sbjct: 45 --------RLAHGTTTLAFRFRDGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSG 96
Query: 1036 CAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKK 1215
+ADC W R+L +E RL LR G SV+ A+KLLS MM +YRG+ L + + +CGWD+
Sbjct: 97 TSADCTTWYRVLRRELRLRELREGQLPSVAGAAKLLSGMMSRYRGLDLCVATALCGWDRS 156
Query: 1216 GPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 1395
GP L+YV +GT L G++FS GSG+ YAYGV+D G+RYD+S +EAY L RA+ HATHRD
Sbjct: 157 GPALFYVYSDGTLLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALACRAVAHATHRD 216
Query: 1396 SYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
+YSGG V+++H++E GW V D L + ++ S
Sbjct: 217 AYSGGSVDLFHVRESGWEHVSRNDAWVLYSELQKLS 252
>ref|XP_003354003.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-5-like
[Sus scrofa].
Length = 279
Score = 203 bits (517), Expect = 2e-52
Identities = 109/210 (51%), Positives = 145/210 (69%)
Frame = +1
Query: 874 QIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQ 1053
+I+M H TT LAFK GVIVA DS A +YIA+ V VIEI+ YLL T + A +C
Sbjct: 62 RIKMLHHTTILAFKILLGVIVAADSWDMAVAYIASQTVKNVIEISLYLLATGAVGAVNC- 120
Query: 1054 YWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYY 1233
R LA++ +Y L+N ISV+AASKLL+NM+YQY+GMGLSMG+MIC W K+GPGLYY
Sbjct: 121 ---RFLAQQXXIYELQNKGCISVAAASKLLANMVYQYKGMGLSMGTMICVWGKRGPGLYY 177
Query: 1234 VDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGV 1413
+D G + G FS GS + +AYG M G+ YDL +E AYD+ +A A+ D+YSGG+
Sbjct: 178 MDSEGNWIWGVDFSVGSRSVHAYGFM--GYSYDLEVERAYDMASQATYXASXSDAYSGGL 235
Query: 1414 VNMYHMKEDGWVKVESTDVSDLMHQYREAS 1503
VN+YH+ EDGW++ S +V+ L ++Y E S
Sbjct: 236 VNLYHVWEDGWIQSSSDNVAYLHYKYSEFS 265
>ref|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-like [Sus scrofa].
Length = 219
Score = 97.8 bits (242), Expect = 2e-20
Identities = 64/193 (33%), Positives = 99/193 (51%)
Frame = +1
Query: 838 LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
LR+ G G+ E+ GTT +A +F GV+V DSR SAG + +K+ ++ +
Sbjct: 2 LRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRI 61
Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
+SG AAD Q + A + L+ + + V AA+ ++ N+ Y+YR LS M+
Sbjct: 62 YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYR-EDLSAHLMV 120
Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
GWD++ G Y G + GSG+TY YG +D+ ++ +S EE AI
Sbjct: 121 AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 1378 HATHRDSYSGGVV 1416
A +RD SGGV+
Sbjct: 181 LAMNRDGSSGGVI 193
>ref|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].
Length = 219
Score = 97.8 bits (242), Expect = 2e-20
Identities = 64/193 (33%), Positives = 99/193 (51%)
Frame = +1
Query: 838 LRSLGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYL 1017
LR+ G G+ E+ GTT +A +F GV+V DSR SAG + +K+ ++ +
Sbjct: 2 LRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRI 61
Query: 1018 LGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMI 1197
+SG AAD Q + A + L+ + + V AA+ ++ N+ Y+YR LS M+
Sbjct: 62 YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYR-EDLSAHLMV 120
Query: 1198 CGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIV 1377
GWD++ G Y G + GSG+TY YG +D+ ++ +S EE AI
Sbjct: 121 AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 1378 HATHRDSYSGGVV 1416
A +RD SGGV+
Sbjct: 181 LAMNRDGSSGGVI 193
>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
Length = 241
Score = 97.1 bits (240), Expect = 3e-20
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
Frame = +1
Query: 880 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 1059
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ + SG AAD Q
Sbjct: 32 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 91
Query: 1060 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 1236
+ + + + + V A+ L M Y+YR L G ++ GWD ++G +Y V
Sbjct: 92 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 150
Query: 1237 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 1416
G + GSG++Y YG +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 151 PMGGMMVRQAFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 210
Query: 1417 NMYHMKEDG 1443
+ + E G
Sbjct: 211 RLAAIAESG 219
>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
Length = 273
Score = 75.5 bits (184), Expect = 9e-14
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
Frame = +1
Query: 838 LRSLGG----DGERNVQIEMA-----------HGTTTLAFKFQHGVIVAVDSRASAGSYI 972
L LGG + +RN +E A GTT FQ GVI+ D+RA+ S +
Sbjct: 6 LEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 65
Query: 973 ATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNM 1152
A K+ I P + +G AAD + R+ A L+ L G V+ +++L
Sbjct: 66 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 125
Query: 1153 MYQYRG-MGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRY 1329
+++Y+G +G S+ ++ G D GP LY V +G+ + GSG A V++ +
Sbjct: 126 LFRYQGHVGASL--IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQP 183
Query: 1330 DLSIEEAYDLGRRAIVHATHRDSYSGGVVN 1419
++++E A L AI D SGG V+
Sbjct: 184 NMTLEAAQGLLVEAITAGILSDLGSGGNVD 213
>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
Length = 277
Score = 75.1 bits (183), Expect = 1e-13
Identities = 48/177 (27%), Positives = 86/177 (48%)
Frame = +1
Query: 892 GTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERLL 1071
GTT ++ G+++ D+RA+ G +A +K+ I+P + +G AAD +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 1072 AKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGT 1251
+ L+ L G V A+++L M+++Y+G + ++ G D GP LY + +G+
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGS 161
Query: 1252 RLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVNM 1422
+ GSG+ A V + R ++ EEA L AI D SG +++
Sbjct: 162 TDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDL 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,889,494
Number of extensions: 1587271
Number of successful extensions: 5580
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5554
Number of HSP's successfully gapped: 16
Length of query: 599
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 494
Effective length of database: 8,729,747
Effective search space: 4312495018
Effective search space used: 4312495018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002543
(1798 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1596 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1596 bits (805), Expect = 0.0
Identities = 820/825 (99%)
Strand = Plus / Minus
Query: 1 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273713 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 29273654
Query: 61 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273653 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 29273594
Query: 121 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273593 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 29273534
Query: 181 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273533 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 29273474
Query: 241 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273473 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 29273414
Query: 301 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctatttggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 29273413 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctacttggtc 29273354
Query: 361 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273353 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 29273294
Query: 421 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273293 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 29273234
Query: 481 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattgctggtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29273233 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattcctggtc 29273174
Query: 541 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29273173 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 29273114
Query: 601 ccctccccttaaggcttagggctttcgctttcacttcctcctccgagagagcggacgcat 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29273113 ccctccccttaaggcttagggctttcgctttcacttcctcctgcgagagagcggacgcat 29273054
Query: 661 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29273053 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagcag 29272994
Query: 721 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272993 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 29272934
Query: 781 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 825
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272933 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 29272889
Score = 1596 bits (805), Expect = 0.0
Identities = 820/825 (99%)
Strand = Plus / Minus
Query: 1 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428821 ttacttgaggagatgcgtgccgaaagggcaggtcctgtgggcggcttcgggttaggaaga 29428762
Query: 61 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428761 ccgttgaactgggagaggtcgtaagagggactaggtcgaaagactgagaggctgcgccct 29428702
Query: 121 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428701 cgcctcggtgctcccttcccccacatgctgcaggtgtatgttgttgcaggacgccccaga 29428642
Query: 181 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428641 acctgtcctcaagactcagtgccctcacctattcattcctacctcttccctacttgtata 29428582
Query: 241 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428581 aaatgatgcttctctgaacatcccttccccatttccgagttgaaactattcgcaatttct 29428522
Query: 301 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctatttggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 29428521 tgctgactccagctttccggttgaggttacgccttttgatgatacgacccctacttggtc 29428462
Query: 361 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428461 cataactgttcccggaggatgccccaacctggaagtgtctctcactgtaatctaatcgcc 29428402
Query: 421 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428401 aagggggctttcgaagccatttgctctctttccttcttttgacagtctatcacctgttgc 29428342
Query: 481 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattgctggtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29428341 ttccctaatttccatgagggcggagcagaaaagcctgtccccgacacaacattcctggtc 29428282
Query: 541 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428281 cccagacactcacaggacacttctcagaaaaggcagggggatgcggaaaaaattctggtt 29428222
Query: 601 ccctccccttaaggcttagggctttcgctttcacttcctcctccgagagagcggacgcat 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29428221 ccctccccttaaggcttagggctttcgctttcacttcctcctgcgagagagcggacgcat 29428162
Query: 661 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29428161 ctccggtgctaggcgatcatggcgctgctggatgtttgcggagccccccgagcgcagcag 29428102
Query: 721 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428101 gaagactgggctttcccagccgcggaaagccggcagcgctcggaccctggtcactacagt 29428042
Query: 781 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 825
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29428041 ttctctatgcgatctccggaactcgccctcccccggggaatgcag 29427997
Score = 424 bits (214), Expect = e-116
Identities = 254/266 (95%), Gaps = 1/266 (0%)
Strand = Plus / Minus
Query: 1421 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270294 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 29270235
Query: 1481 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270234 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 29270175
Query: 1541 tgaggaagccgggcctactcagggacctggaccagttcaggccccaaaagaaagagggg- 1599
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 29270174 tgaggaagccgggcctactcagggacctggaccagttcaggccccagaagaaagaggggc 29270115
Query: 1600 cttacgtgacccagagggaatgaaccattggtccctgggaggcaaggcggaatttatacc 1659
|| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
Sbjct: 29270114 ctaacgtgacccagagggaatgaaccagtggtccctgggaggcagggcggagtttatcct 29270055
Query: 1660 cttttgtagaatctgcttcaatggag 1685
|| ||||| |||||||||||||||
Sbjct: 29270054 tttgtgtagtctctgcttcaatggag 29270029
Score = 424 bits (214), Expect = e-116
Identities = 254/266 (95%), Gaps = 1/266 (0%)
Strand = Plus / Minus
Query: 1421 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425402 tgtaccacatgaaggaagatgggtgggtgaaggtggagagtacggacgtcagtgacctga 29425343
Query: 1481 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425342 tgcaccagtaccgggaggccagtctgtaagggtggcggcggcagctgggccggcctctcc 29425283
Query: 1541 tgaggaagccgggcctactcagggacctggaccagttcaggccccaaaagaaagagggg- 1599
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 29425282 tgaggaagccgggcctactcagggacctggaccagttcaggccccagaagaaagaggggc 29425223
Query: 1600 cttacgtgacccagagggaatgaaccattggtccctgggaggcaaggcggaatttatacc 1659
|| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
Sbjct: 29425222 ctaacgtgacccagagggaatgaaccagtggtccctgggaggcagggcggagtttatcct 29425163
Query: 1660 cttttgtagaatctgcttcaatggag 1685
|| ||||| |||||||||||||||
Sbjct: 29425162 tttgtgtagtctctgcttcaatggag 29425137
Score = 410 bits (207), Expect = e-111
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 1214 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270746 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 29270687
Query: 1274 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270686 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 29270627
Query: 1334 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29270626 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 29270567
Query: 1394 acagctattctggaggcgttgtcaata 1420
|||||||||||||||||||||||||||
Sbjct: 29270566 acagctattctggaggcgttgtcaata 29270540
Score = 410 bits (207), Expect = e-111
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 1214 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425854 agggtcctggactctactatgtggatgaaaatgggactcggctctcgggaaatatgttct 29425795
Query: 1274 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425794 ccactggtagcgggaacacctacgcttatggggtcatggacagtggccatcggtacgatc 29425735
Query: 1334 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29425734 ttagcattgaagaggcctatgacctgggccggagggctattgttcatgccactcatcgag 29425675
Query: 1394 acagctattctggaggcgttgtcaata 1420
|||||||||||||||||||||||||||
Sbjct: 29425674 acagctattctggaggcgttgtcaata 29425648
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 824 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272108 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 29272049
Query: 884 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29272048 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 29271989
Query: 944 attctcgggcctcggccgggagttacattg 973
||||||||||||||||||||||||||||||
Sbjct: 29271988 attctcgggcctcggccgggagttacattg 29271959
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 824 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29427216 agcccactgaattcctccggtccctgggtggggatggagaaaggaacgtacagattgaga 29427157
Query: 884 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29427156 tggctcatggcactaccacgctggccttcaagttccagcacggagtgattgtggcggtgg 29427097
Query: 944 attctcgggcctcggccgggagttacattg 973
||||||||||||||||||||||||||||||
Sbjct: 29427096 attctcgggcctcggccgggagttacattg 29427067
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1083 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271246 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 29271187
Query: 1143 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271186 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 29271127
Query: 1203 ctgggacaagaagg 1216
||||||||||||||
Sbjct: 29271126 ctgggacaagaagg 29271113
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1083 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426354 caggttgtactatctgcggaatggggaccgtatctcagtgtccgcagcctccaaactgct 29426295
Query: 1143 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426294 ctccaatatgatgtaccagtaccggggcatgggcctctccatgggcagtatgatctgtgg 29426235
Query: 1203 ctgggacaagaagg 1216
||||||||||||||
Sbjct: 29426234 ctgggacaagaagg 29426221
Score = 212 bits (107), Expect = 5e-52
Identities = 113/115 (98%)
Strand = Plus / Minus
Query: 973 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271789 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 29271730
Query: 1033 ggctgtgcggcggactgtcagtattgggagcgtctgctggccaaggagtgcaggt 1087
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29271729 ggctctgcggcagactgtcagtattgggagcgtctgctggccaaggagtgcaggt 29271675
Score = 212 bits (107), Expect = 5e-52
Identities = 113/115 (98%)
Strand = Plus / Minus
Query: 973 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426897 gccacattaagagtgaacaaggtgattgagattaacccttacctgcttggcaccatgtct 29426838
Query: 1033 ggctgtgcggcggactgtcagtattgggagcgtctgctggccaaggagtgcaggt 1087
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29426837 ggctctgcggcagactgtcagtattgggagcgtctgctggccaaggagtgcaggt 29426783
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,358,233
Number of extensions: 411
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 12
Length of query: 1798
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1776
Effective length of database: 2,808,408,574
Effective search space: 4987733627424
Effective search space used: 4987733627424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)