Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030532.1| PDZ and LIM domain protein 1 [Bos taurus]. 540 e-168
Alignment gi|NP_001029818.1| PDZ and LIM domain protein 3 [Bos taurus]. 278 3e-84
Alignment gi|NP_001029663.1| PDZ and LIM domain protein 4 [Bos taurus]. 201 1e-60
Alignment gi|NP_001030493.1| LIM domain binding 3 [Bos taurus]. 112 8e-25
Alignment gi|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos ... 109 5e-24
Alignment gi|NP_001017947.1| PDZ and LIM domain protein 7 isoform 1 [Bos ... 108 1e-23
Alignment gi|NP_001029602.1| PDZ and LIM domain protein 2 [Bos taurus]. 90 3e-23
Alignment gi|NP_001070912.1| PDZ and LIM domain 5 [Bos taurus]. 101 1e-21
Alignment gi|NP_001077220.1| synaptopodin-2 [Bos taurus]. 66 5e-11
Alignment gi|XP_002700507.1| PREDICTED: SHROOM2-like [Bos taurus]. 57 4e-08
>ref|NP_001030532.1| PDZ and LIM domain protein 1 [Bos taurus].
Length = 328
Score = 540 bits (1392), Expect(2) = e-168
Identities = 271/296 (91%), Positives = 275/296 (92%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
MTT QIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAI NLC+GDVITAIDGENTSN
Sbjct: 1 MTTLQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIGNLCVGDVITAIDGENTSN 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 477
MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQE LHIGSAH
Sbjct: 61 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEALHIGSAH 120
Query: 478 NRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALD 657
NR R+ITNQYNNPAGLYSSENISSFN+ALESKTAASGQE NGRALD
Sbjct: 121 NRSAVPFTASPAFSSAPRVITNQYNNPAGLYSSENISSFNNALESKTAASGQE-NGRALD 179
Query: 658 HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 837
HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV
Sbjct: 180 HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 239
Query: 838 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLR+RHRHP YVCTDCGTNLKQK
Sbjct: 240 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRERHRHPECYVCTDCGTNLKQK 295
Score = 70.5 bits (171), Expect(2) = e-168
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+GHFFVEDQIYCEKHARERV PPEGYDV+TVF K
Sbjct: 295 KGHFFVEDQIYCEKHARERVTPPEGYDVITVFPK 328
>ref|NP_001029818.1| PDZ and LIM domain protein 3 [Bos taurus].
Length = 316
Score = 278 bits (710), Expect(2) = 3e-84
Identities = 144/293 (49%), Positives = 184/293 (62%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q +VL GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R+E ++WSP VTE+GK HP+K+NL SEPQE IG+AHNR
Sbjct: 63 ADAQDRIKAAGHQLCLKIDRAEARLWSPQVTEDGKAHPFKINLESEPQEFKPIGAAHNRR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQ 666
++++ YN+P GLYS+ NI + A GQ G Q
Sbjct: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNI---------QDALHGQ-LRGLIPSSPQ 172
Query: 667 LPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAP 846
+ ES+VY+ML + + P+QS SF VLQE++ G ++P+G RSV+AP
Sbjct: 173 NEPTASVPPESDVYRMLHDNRNEPTQPRQSGSFRVLQELVND---GADDRPAGTRSVRAP 229
Query: 847 VTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
VTKV G QK+P CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 230 VTKVHGGAGGTQKMPFCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 282
Score = 53.5 bits (127), Expect(2) = 3e-84
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FFVE ++YCE HAR R+ PPEGYD VT++ K
Sbjct: 282 KGYFFVEGELYCETHARARMRPPEGYDTVTLYPK 315
>ref|NP_001029663.1| PDZ and LIM domain protein 4 [Bos taurus].
Length = 331
Score = 201 bits (512), Expect(2) = 1e-60
Identities = 122/297 (41%), Positives = 167/297 (56%), Gaps = 6/297 (2%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA+A LC GD+I AI+GE+T MTHLE
Sbjct: 5 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRXXX 492
AQN+IKGC D++TL+V+R E + W P E+ K +++++ SE Q+ + S
Sbjct: 65 AQNRIKGCRDHLTLSVSRPEGRSW-PSTPEDNKAQAHRIHIDSEAQDGSPLTSRRPSATG 123
Query: 493 XXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAA-----SGQETNGRALD 657
+ + Y L N S+ + L ++ A R L
Sbjct: 124 LGPEDGRPG-----LGSPYGQSPRLPVPHNGSNSEATLLAQMGALHVSPPHSTDPARGLP 178
Query: 658 HSQLPSGLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRS 834
S+ +D SEVY+ML+E E PKQS SF LQ +LE+ E G+ P G R+
Sbjct: 179 RSR---DCGVDLGSEVYRMLREPAEPAAAEPKQSGSFRYLQGMLEAGEGGERPGPGGPRN 235
Query: 835 VKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
+K +K+ A + Q LP C +CG GIVG VK RD+ HP ++C+DCG NLKQ+
Sbjct: 236 LKPTASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQR 292
Score = 51.2 bits (121), Expect(2) = 1e-60
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
G+FF+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 293 GYFFLDERLYCESHAKARVKPPEGYDVVAVY 323
>ref|NP_001030493.1| LIM domain binding 3 [Bos taurus].
Length = 330
Score = 112 bits (279), Expect = 8e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI 381
AQNKIK + N++LT+ +S++ I
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPI 87
>ref|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos taurus].
Length = 424
Score = 109 bits (272), Expect = 5e-24
Identities = 48/103 (46%), Positives = 72/103 (69%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M + ++VL+GP PWGFRL GGKDF PL+ISR+TPG KAA A + +GD + +IDGEN
Sbjct: 1 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYK 426
+TH+EAQNKI+ C + ++L+++R++ P + + P +
Sbjct: 61 LTHIEAQNKIRACGERLSLSLSRAQPAQSKPQKVQTPDKQPLR 103
>ref|NP_001017947.1| PDZ and LIM domain protein 7 isoform 1 [Bos taurus].
Length = 222
Score = 108 bits (269), Expect = 1e-23
Identities = 46/85 (54%), Positives = 67/85 (78%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M + ++VL+GP PWGFRL GGKDF PL+ISR+TPG KAA A + +GD + +IDGEN
Sbjct: 1 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSE 372
+TH+EAQNKI+ C + ++L+++R++
Sbjct: 61 LTHIEAQNKIRACGERLSLSLSRAQ 85
>ref|NP_001029602.1| PDZ and LIM domain protein 2 [Bos taurus].
Length = 348
Score = 89.7 bits (221), Expect(2) = 3e-23
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Frame = +1
Query: 682 VIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVA 861
++ ++SEV+KMLQE +E P+QS+SF +LQE LE+EE+G P+ S +P + +
Sbjct: 211 LLREDSEVFKMLQENREARMAPRQSSSFRLLQEALEAEERG--GTPAYLPSSLSPQSSLP 268
Query: 862 AS--IGNAQKLPMCDKCGTGIVGVFVKLRD-RHRHPGGYVCTDCGTNLKQK 1005
S + + KL C+KC T I V++++ R+RHPG Y C DCG NLK +
Sbjct: 269 TSRALASPPKLHTCEKCNTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMR 319
Score = 37.7 bits (86), Expect(2) = 3e-23
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPP 1070
GHF+V D++YCEKHAR+R P
Sbjct: 320 GHFWVGDELYCEKHARQRYSAP 341
Score = 74.3 bits (181), Expect = 2e-13
Identities = 33/76 (43%), Positives = 50/76 (65%)
Frame = +1
Query: 145 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNK 324
GP PWGFR+ GG+DF P+ +++VT KA A+L GD+I +I+GE+ +M H EAQ+K
Sbjct: 9 GPAPWGFRISGGRDFHTPIMVTKVTERGKAEAADLRPGDIIVSINGESAKDMLHAEAQSK 68
Query: 325 IKGCTDNMTLTVARSE 372
I+ + L + R +
Sbjct: 69 IRQSPSPLRLQLDRPQ 84
>ref|NP_001070912.1| PDZ and LIM domain 5 [Bos taurus].
Length = 234
Score = 101 bits (252), Expect = 1e-21
Identities = 47/84 (55%), Positives = 60/84 (71%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M+ + L GP PWGFRL GGKDF PL IS + G KA+ AN+ IGDV+ +IDG +
Sbjct: 1 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAHG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARS 369
MTHLEAQNKIKGCT ++ +T+ R+
Sbjct: 61 MTHLEAQNKIKGCTGSLNMTLQRA 84
>ref|NP_001077220.1| synaptopodin-2 [Bos taurus].
Length = 1259
Score = 66.2 bits (160), Expect = 5e-11
Identities = 31/90 (34%), Positives = 54/90 (60%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
I + G PWGFRL GGK+ +QPL ++++ SKA+ + LC GD + +I+G +++T+ E
Sbjct: 9 ISMTGGAPWGFRLQGGKEQQQPLQVAKIRSQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTE 402
++ TD++ + V R I ++E
Sbjct: 69 VIKLMESITDSLQMLVKRPSSGISETSISE 98
>ref|XP_002700507.1| PREDICTED: SHROOM2-like [Bos taurus].
Length = 925
Score = 56.6 bits (135), Expect = 4e-08
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +1
Query: 76 PGLSARVAARRHRAMTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSK-AAIANLC 252
P A AR ++ L G PWGF L GG++ +PL I++V GSK AA+ L
Sbjct: 10 PERLAEAEARTADGGRLVEVQLSGGAPWGFTLKGGREHGEPLVITKVEEGSKAAAVDKLL 69
Query: 253 IGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSP 390
GD I I+ S EA +KG + L V R + W P
Sbjct: 70 AGDEIVGINDVGLSGFRQ-EAICLVKGSHKTLKLVVKRRNELNWRP 114
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,640,424
Number of extensions: 1393348
Number of successful extensions: 6261
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6201
Number of HSP's successfully gapped: 19
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534974.2| PREDICTED: similar to PDZ and LIM domain 1 (elf... 488 e-152
Alignment gi|XP_848906.1| PREDICTED: similar to PDZ and LIM domain 1 (elf... 341 7e-95
Alignment gi|XP_848740.1| PREDICTED: similar to PDZ and LIM domain 3 isof... 279 2e-84
Alignment gi|XP_540022.2| PREDICTED: similar to PDZ and LIM domain 3 isof... 216 1e-65
Alignment gi|XP_538619.2| PREDICTED: similar to PDZ and LIM domain 4 [Can... 198 1e-59
Alignment gi|XP_856879.1| PREDICTED: similar to PDZ and LIM domain 3 isof... 174 1e-43
Alignment gi|XP_543249.2| PREDICTED: similar to PDZ and LIM domain 2 isof... 141 1e-38
Alignment gi|XP_864947.1| PREDICTED: similar to LIM-domain binding factor... 130 2e-30
Alignment gi|XP_864929.1| PREDICTED: similar to LIM domain binding 3 isof... 129 4e-30
Alignment gi|XP_852115.1| PREDICTED: similar to LIM domain binding 3 isof... 129 5e-30
>ref|XP_534974.2| PREDICTED: similar to PDZ and LIM domain 1 (elfin) [Canis
familiaris].
Length = 420
Score = 488 bits (1256), Expect(2) = e-152
Identities = 256/326 (78%), Positives = 262/326 (80%), Gaps = 1/326 (0%)
Frame = +1
Query: 31 FPTAAGEPSAPFC-LLPGLSARVAARRHRAMTTQQIVLQGPGPWGFRLVGGKDFEQPLAI 207
FP++ G A FC PG R A R+ A WG G
Sbjct: 79 FPSSRGGGRAAFCPAFPGRKRRAAVPRNTA-------------WG----GAPTLPPEGTR 121
Query: 208 SRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWS 387
RVTPGSKAA ANLCIGDVITAIDGENTS MTHLEAQNKIKGCTDNMTLTV RSEQKIWS
Sbjct: 122 GRVTPGSKAAAANLCIGDVITAIDGENTSGMTHLEAQNKIKGCTDNMTLTVTRSEQKIWS 181
Query: 388 PLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRXXXXXXXXXXXXXXXRIITNQYNNPAGL 567
PLVTEEGKRHPYKMNLASEPQEVLHIGSAHNR R+ITNQYNNPAGL
Sbjct: 182 PLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSSAPRVITNQYNNPAGL 241
Query: 568 YSSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPP 747
YSSENIS+FN+ALESKTAASGQETNGRALDHSQ PSGLVIDKESEVYKMLQEKQELNEPP
Sbjct: 242 YSSENISNFNNALESKTAASGQETNGRALDHSQPPSGLVIDKESEVYKMLQEKQELNEPP 301
Query: 748 KQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGV 927
KQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGV
Sbjct: 302 KQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGV 361
Query: 928 FVKLRDRHRHPGGYVCTDCGTNLKQK 1005
FVKLRDRHRHP YVCTDCGTNLKQK
Sbjct: 362 FVKLRDRHRHPECYVCTDCGTNLKQK 387
Score = 70.9 bits (172), Expect(2) = e-152
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+GHFFVEDQIYCEKHARERV PPEGYDVVTVF K
Sbjct: 387 KGHFFVEDQIYCEKHARERVTPPEGYDVVTVFPK 420
>ref|XP_848906.1| PREDICTED: similar to PDZ and LIM domain 1 (elfin) [Canis
familiaris].
Length = 248
Score = 341 bits (875), Expect(2) = 7e-95
Identities = 182/235 (77%), Positives = 188/235 (80%)
Frame = +1
Query: 40 AAGEPSAPFCLLPGLSARVAARRHRAMTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVT 219
AAGEPSA P S V A +TQQIVLQGPG W F LVGGKDFEQPLAISRVT
Sbjct: 4 AAGEPSATH---PVASVPVGCH---AKSTQQIVLQGPGLWSFHLVGGKDFEQPLAISRVT 57
Query: 220 PGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVT 399
PGSK A ANLCIGDVITAI+GEN+S MTHLEAQNKIKGC DNMTLTV R EQK WS LVT
Sbjct: 58 PGSKFAGANLCIGDVITAINGENSSGMTHLEAQNKIKGCMDNMTLTVTRYEQKTWSSLVT 117
Query: 400 EEGKRHPYKMNLASEPQEVLHIGSAHNRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSE 579
EEGKRHPYKMNLASEPQEVLHIGSAHNR R+ITNQYNNPAGLYSSE
Sbjct: 118 EEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASLASSSAPRVITNQYNNPAGLYSSE 177
Query: 580 NISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEP 744
NIS+FN+ LESKTAASGQETNGRALDHSQ SGLV DKESEVYKML EKQELNEP
Sbjct: 178 NISNFNNTLESKTAASGQETNGRALDHSQPLSGLVNDKESEVYKMLHEKQELNEP 232
Score = 25.8 bits (55), Expect(2) = 7e-95
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 744 SETVHFVPGFAGN 782
S+ +HF+PG AGN
Sbjct: 233 SQAIHFIPGIAGN 245
>ref|XP_848740.1| PREDICTED: similar to PDZ and LIM domain 3 isoform 2 [Canis
familiaris].
Length = 317
Score = 279 bits (713), Expect(2) = 2e-84
Identities = 141/294 (47%), Positives = 187/294 (63%), Gaps = 1/294 (0%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q +VL GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R E ++WSP V+E+GK HP+K+NL SEPQE IG+AHNR
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENI-SSFNSALESKTAASGQETNGRALDHS 663
++++ YN+P GLYS+ NI + + L +S Q
Sbjct: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNE-------- 174
Query: 664 QLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKA 843
P+ + +S+VY+ML + + P+QS SF VLQE++ G ++P+G RSV+A
Sbjct: 175 --PTTTSVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVND---GPDDRPAGTRSVRA 229
Query: 844 PVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
PVTKV G+ QK+P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 230 PVTKVHGGAGSTQKMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 283
Score = 53.1 bits (126), Expect(2) = 2e-84
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FFVE ++YCE HAR R PPEGYD VT++ K
Sbjct: 283 KGYFFVEGELYCETHARARTRPPEGYDTVTLYPK 316
>ref|XP_540022.2| PREDICTED: similar to PDZ and LIM domain 3 isoform 1 [Canis
familiaris].
Length = 277
Score = 216 bits (550), Expect(2) = 1e-65
Identities = 124/294 (42%), Positives = 166/294 (56%), Gaps = 1/294 (0%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q +VL GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R E ++WSP V+E+GK HP+K+NL SEPQ+V + HN
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQDVNYFEHKHN-- 120
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRAL-DHS 663
II ++ + P + T+ Q R L D+
Sbjct: 121 ---------VRPKPFIIPSRSSEP-----------------TTTSVPPQSDVYRMLHDNR 154
Query: 664 QLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKA 843
P+ ++S +++LQE +N+ P ++P+G RSV+A
Sbjct: 155 NEPTQ---PRQSGSFRVLQEL--VNDGP--------------------DDRPAGTRSVRA 189
Query: 844 PVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
PVTKV G+ QK+P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 190 PVTKVHGGAGSTQKMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 243
Score = 53.1 bits (126), Expect(2) = 1e-65
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FFVE ++YCE HAR R PPEGYD VT++ K
Sbjct: 243 KGYFFVEGELYCETHARARTRPPEGYDTVTLYPK 276
>ref|XP_538619.2| PREDICTED: similar to PDZ and LIM domain 4 [Canis familiaris].
Length = 393
Score = 198 bits (503), Expect(2) = 1e-59
Identities = 126/307 (41%), Positives = 170/307 (55%), Gaps = 7/307 (2%)
Frame = +1
Query: 106 RHRAMTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGE 285
R R + L+GP PWGFRLVGG+DF PL ISRV GSKAA+A LC GD+I AI+GE
Sbjct: 58 RLRPAMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGE 117
Query: 286 NTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHI 465
+T MTHLEAQN+IKGC D++ L+V+R E + W P E+ K ++++ E Q+
Sbjct: 118 STELMTHLEAQNRIKGCHDHLILSVSRPEGRSW-PGAPEDSKAQAQRIHIDPEVQD---- 172
Query: 466 GS-AHNRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESK-----TAAS 627
GS A +R + + Y P+ L N SS + L ++ +
Sbjct: 173 GSPATSRRPSATGIGLEDGRPG--LGSPYGQPSHLPFHHNGSSSEATLLTQMSTLHVSPL 230
Query: 628 GQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKG 804
R L S+ +D SEVY+ML+E E L PKQS SF LQ +LE+ E G
Sbjct: 231 HSPDTARGLPRSR---DCGVDLGSEVYRMLREPAEPLASEPKQSGSFRYLQGMLEAGEGG 287
Query: 805 DPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDC 984
+ PS R+ K +K+ + Q LP C +CG GIVG VK RD+ HP ++C+DC
Sbjct: 288 ERLGPSSPRNPKPTASKLGTPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDC 347
Query: 985 GTNLKQK 1005
G NLKQ+
Sbjct: 348 GLNLKQR 354
Score = 51.2 bits (121), Expect(2) = 1e-59
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
G+FF+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 355 GYFFLDERLYCESHAKARVKPPEGYDVVAVY 385
>ref|XP_856879.1| PREDICTED: similar to PDZ and LIM domain 3 isoform 3 [Canis
familiaris].
Length = 174
Score = 174 bits (441), Expect = 1e-43
Identities = 82/153 (53%), Positives = 104/153 (67%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q +VL GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R E ++WSP V+E+GK HP+K+NL SEPQE IG+AHNR
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENI 585
++++ YN+P GLYS+ NI
Sbjct: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNI 155
>ref|XP_543249.2| PREDICTED: similar to PDZ and LIM domain 2 isoform 2 [Canis
familiaris].
Length = 358
Score = 141 bits (355), Expect(2) = 1e-38
Identities = 106/330 (32%), Positives = 154/330 (46%), Gaps = 36/330 (10%)
Frame = +1
Query: 124 TQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMT 303
T + + GPGPWGFR+ GG+DF P+ +++VT KA A+L GD+I AI+GE+ M
Sbjct: 4 TLTVDVAGPGPWGFRITGGRDFHSPIMVTKVTERGKAEAADLRPGDIIVAINGESAEGML 63
Query: 304 HLEAQNKIKGCTDNMTLTVARS-----EQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIG 468
H EAQ+KI+ + L + RS Q V R + S+ Q L
Sbjct: 64 HAEAQSKIRHSPSPLRLQLDRSPAASPRQTNGESSVEVLATRFQGSVRTHSDSQSSLRSS 123
Query: 469 SAH---------NRXXXXXXXXXXXXXXXRIITNQYNNPAGLYS----SENISSFNSALE 609
+ + +++ + N A YS + N S+
Sbjct: 124 CSSPCSSSPQPGSPFSALPPSSPHTLPGEAVVSRSFQNLA--YSPGPTAANRFSYGGRPG 181
Query: 610 SKTAASGQETNGRAL----DHSQLPSGLVIDKESE-----------VYKMLQEKQELNEP 744
S+ A G + L PS + +SE VYKMLQE +E
Sbjct: 182 SRQAGLGGAGDAAVLVLPPSPGPCPSSPRLSADSERGSHLLDEDSEVYKMLQENREGRVA 241
Query: 745 PKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAAS--IGNAQKLPMCDKCGTGI 918
P+QS+SF +LQE LE+EEKG P+ S+ +P + + S + KL C+KCGT I
Sbjct: 242 PRQSSSFRLLQEALEAEEKG--GTPAFLPSLLSPQSSLPTSRALATPPKLHTCEKCGTSI 299
Query: 919 VGVFVKLRD-RHRHPGGYVCTDCGTNLKQK 1005
V V++++ R+RHPG Y C DCG NLK +
Sbjct: 300 VNHAVRIQEGRYRHPGCYSCADCGLNLKMR 329
Score = 37.7 bits (86), Expect(2) = 1e-38
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPP 1070
GHF+V D++YCEKHAR+R P
Sbjct: 330 GHFWVGDELYCEKHARQRYSSP 351
>ref|XP_864947.1| PREDICTED: similar to LIM-domain binding factor 3 isoform 8 [Canis
familiaris].
Length = 291
Score = 130 bits (327), Expect = 2e-30
Identities = 93/259 (35%), Positives = 131/259 (50%), Gaps = 25/259 (9%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P V P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + + II QYN P +YS + I A+ + A G +
Sbjct: 125 SALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPS----GLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQ 777
+G D Q PS L +D S VY+ + + Q E QS SF +L
Sbjct: 182 SGTE-DPGQAPSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILA 240
Query: 778 EILESEEKGDPNKPSGFRS 834
++ +E DP++ + RS
Sbjct: 241 QMTGTEYMQDPDEEALRRS 259
>ref|XP_864929.1| PREDICTED: similar to LIM domain binding 3 isoform 7 [Canis
familiaris].
Length = 290
Score = 129 bits (325), Expect = 4e-30
Identities = 92/260 (35%), Positives = 130/260 (50%), Gaps = 26/260 (10%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P V P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + + II QYN P +YS + I A+ + A G +
Sbjct: 125 SALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPSG-----LVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVL 774
+G H LP L +D S VY+ + + Q E QS SF +L
Sbjct: 182 SGA---HQPLPGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRIL 238
Query: 775 QEILESEEKGDPNKPSGFRS 834
++ +E DP++ + RS
Sbjct: 239 AQMTGTEYMQDPDEEALRRS 258
>ref|XP_852115.1| PREDICTED: similar to LIM domain binding 3 isoform 2 [Canis
familiaris].
Length = 621
Score = 129 bits (324), Expect = 5e-30
Identities = 90/255 (35%), Positives = 129/255 (50%), Gaps = 21/255 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P V P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + + II QYN P +YS + I A+ + A G +
Sbjct: 125 SALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEILE 789
+G + S L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SGASPLASLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTG 241
Query: 790 SEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 242 TEYMQDPDEEALRRS 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,596,753
Number of extensions: 1431665
Number of successful extensions: 6099
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 6055
Number of HSP's successfully gapped: 46
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066272.1| PDZ and LIM domain protein 1 [Homo sapiens]. 530 e-164
Alignment gi|NP_001107579.1| PDZ and LIM domain protein 3 isoform b [Homo... 274 8e-83
Alignment gi|NP_055291.2| PDZ and LIM domain protein 3 isoform a [Homo sa... 227 1e-68
Alignment gi|NP_003678.2| PDZ and LIM domain protein 4 isoform 1 [Homo sa... 198 1e-59
Alignment gi|NP_067643.3| PDZ and LIM domain protein 2 isoform 2 [Homo sa... 142 6e-39
Alignment gi|NP_789847.1| PDZ and LIM domain protein 2 isoform 1 [Homo sa... 140 2e-33
Alignment gi|NP_001124499.1| PDZ and LIM domain protein 4 isoform 2 [Homo... 139 6e-33
Alignment gi|NP_001073583.1| LIM domain-binding protein 3 isoform 2 [Homo... 125 7e-29
Alignment gi|NP_001073585.1| LIM domain-binding protein 3 isoform 4 [Homo... 125 9e-29
Alignment gi|NP_976227.1| PDZ and LIM domain protein 7 isoform 2 [Homo sa... 113 4e-25
>ref|NP_066272.1| PDZ and LIM domain protein 1 [Homo sapiens].
Length = 329
Score = 530 bits (1366), Expect(2) = e-164
Identities = 263/296 (88%), Positives = 271/296 (91%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
MTTQQI LQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAA+ANLCIGDVITAIDGENTSN
Sbjct: 1 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSN 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 477
MTHLEAQN+IKGCTDN+TLTVARSE K+WSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH
Sbjct: 61 MTHLEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 120
Query: 478 NRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALD 657
NR R+ITNQYNNPAGLYSSENIS+FN+ALESKTAASG E N R LD
Sbjct: 121 NRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLD 180
Query: 658 HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 837
H+Q PS LVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV
Sbjct: 181 HAQPPSSLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 240
Query: 838 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHP YVCTDCGTNLKQK
Sbjct: 241 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQK 296
Score = 69.3 bits (168), Expect(2) = e-164
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+GHFFVEDQIYCEKHARERV PPEGY+VVTVF K
Sbjct: 296 KGHFFVEDQIYCEKHARERVTPPEGYEVVTVFPK 329
>ref|NP_001107579.1| PDZ and LIM domain protein 3 isoform b [Homo sapiens].
Length = 316
Score = 274 bits (700), Expect(2) = 8e-83
Identities = 141/293 (48%), Positives = 184/293 (62%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q ++L GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R E +WSP V+E+GK HP+K+NL SEPQE IG+AHNR
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQ 666
++++ YN+P GLYS+ NI + A GQ G Q
Sbjct: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNI---------QDALHGQ-LRGLIPSSPQ 172
Query: 667 LPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAP 846
+ ES+VY+ML + + P+QS SF VLQ +++ G ++P+G RSV+AP
Sbjct: 173 NEPTASVPPESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDD---GSDDRPAGTRSVRAP 229
Query: 847 VTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
VTKV G AQ++P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 230 VTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 282
Score = 52.8 bits (125), Expect(2) = 8e-83
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FF+E ++YCE HAR R PPEGYD VT++ K
Sbjct: 282 KGYFFIEGELYCETHARARTKPPEGYDTVTLYPK 315
>ref|NP_055291.2| PDZ and LIM domain protein 3 isoform a [Homo sapiens].
Length = 364
Score = 227 bits (578), Expect(2) = 1e-68
Identities = 129/339 (38%), Positives = 178/339 (52%), Gaps = 46/339 (13%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q ++L GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R E +WSP V+E+GK HP+K+NL SEPQ+ + HN
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASG------------ 630
++ + P+G+ S+ +S T G
Sbjct: 123 PKPFVIPGR--------SSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNI 174
Query: 631 ---QETNGRALDHSQLPSGLVIDKESEV-------------------------------Y 708
E G + H+Q + + + + + Y
Sbjct: 175 PLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVY 234
Query: 709 KMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKL 888
+ML + + P+QS SF VLQ +++ G ++P+G RSV+APVTKV G AQ++
Sbjct: 235 RMLHDNRNEPTQPRQSGSFRVLQGMVDD---GSDDRPAGTRSVRAPVTKVHGGSGGAQRM 291
Query: 889 PMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 330
Score = 52.8 bits (125), Expect(2) = 1e-68
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FF+E ++YCE HAR R PPEGYD VT++ K
Sbjct: 330 KGYFFIEGELYCETHARARTKPPEGYDTVTLYPK 363
>ref|NP_003678.2| PDZ and LIM domain protein 4 isoform 1 [Homo sapiens].
Length = 330
Score = 198 bits (504), Expect(2) = 1e-59
Identities = 120/294 (40%), Positives = 165/294 (56%), Gaps = 3/294 (1%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA+A LC GD+I AI+GE+T MTHLE
Sbjct: 5 VTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRXXX 492
AQN+IKGC D++TL+V+R E + W P ++ K +++++ E Q+ +
Sbjct: 65 AQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQD-----GSPTTSRR 118
Query: 493 XXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQLP 672
+ + Y P N SS + L ++ + A LP
Sbjct: 119 PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSS-EATLPAQMSTLHVSPPPSADPARGLP 177
Query: 673 SG--LVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKA 843
+D SEVY+ML+E E + PKQS SF LQ +LE+ E GD P G R++K
Sbjct: 178 RSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKP 237
Query: 844 PVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
+K+ A + Q LP C +CG GIVG VK RD+ HP ++C+DCG NLKQ+
Sbjct: 238 TASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQR 291
Score = 51.2 bits (121), Expect(2) = 1e-59
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
G+FF+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 292 GYFFLDERLYCESHAKARVKPPEGYDVVAVY 322
>ref|NP_067643.3| PDZ and LIM domain protein 2 isoform 2 [Homo sapiens].
Length = 602
Score = 142 bits (358), Expect(2) = 6e-39
Identities = 117/372 (31%), Positives = 172/372 (46%), Gaps = 38/372 (10%)
Frame = +1
Query: 4 LPGPKPRALFPTAAGEP----SAPFCLLPGLSARVAARRHRAMTTQQIV-LQGPGPWGFR 168
L P R L P + G + P P AR A R V + GP PWGFR
Sbjct: 207 LQPPARRVLCPRSEGGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFR 266
Query: 169 LVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNM 348
+ GG+DF P+ +++V KA A+L GD+I AI+GE+ M H EAQ+KI+ +
Sbjct: 267 ITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPL 326
Query: 349 TLTVARSEQKIWSPLVTEEGK-------RHPYKMNLASEPQEVLHIG-------SAHNRX 486
L + RS+ SP T R + +E Q L S
Sbjct: 327 RLQLDRSQAT--SPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGS 384
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPA---GLYSSENISSFNSALESKTAASGQETNGRAL- 654
I+ + + A GL +++ +S ++ S+ A G+ + L
Sbjct: 385 PFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLS-YSGRPGSRQAGLGRAGDSAVLV 443
Query: 655 ------DHSQLPS------GLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEE 798
S PS L++D++SEV+KMLQE +E P+QS+SF +LQE LE+EE
Sbjct: 444 LPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEE 503
Query: 799 KGDPNKPSGFRSVKAPVTKVAAS--IGNAQKLPMCDKCGTGIVGVFVKLRD-RHRHPGGY 969
+G P+ S +P + + AS + KL C+KC T I V++++ R+RHPG Y
Sbjct: 504 RG--GTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCY 561
Query: 970 VCTDCGTNLKQK 1005
C DCG NLK +
Sbjct: 562 TCADCGLNLKMR 573
Score = 37.7 bits (86), Expect(2) = 6e-39
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPP 1070
GHF+V D++YCEKHAR+R P
Sbjct: 574 GHFWVGDELYCEKHARQRYSAP 595
>ref|NP_789847.1| PDZ and LIM domain protein 2 isoform 1 [Homo sapiens].
Length = 366
Score = 140 bits (354), Expect = 2e-33
Identities = 104/320 (32%), Positives = 156/320 (48%), Gaps = 33/320 (10%)
Frame = +1
Query: 145 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNK 324
GP PWGFR+ GG+DF P+ +++V KA A+L GD+I AI+GE+ M H EAQ+K
Sbjct: 9 GPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSK 68
Query: 325 IKGCTDNMTLTVARSEQKIWSPLVTEEGK-------RHPYKMNLASEPQEVLHIG----- 468
I+ + L + RS+ SP T R + +E Q L
Sbjct: 69 IRQSPSPLRLQLDRSQAT--SPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPT 126
Query: 469 --SAHNRXXXXXXXXXXXXXXXRIITNQYNNPA---GLYSSENISSFNSALESKTAASGQ 633
S I+ + + A GL +++ +S ++ S+ A G+
Sbjct: 127 SLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLS-YSGRPGSRQAGLGR 185
Query: 634 ETNGRAL-------DHSQLPS------GLVIDKESEVYKMLQEKQELNEPPKQSTSFLVL 774
+ L S PS L++D++SEV+KMLQE +E P+QS+SF +L
Sbjct: 186 AGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLL 245
Query: 775 QEILESEEKGDPNKPSGFRSVKAPVTKVAAS--IGNAQKLPMCDKCGTGIVGVFVKLRD- 945
QE LE+EE+G P+ S +P + + AS + KL C+KC T I V++++
Sbjct: 246 QEALEAEERG--GTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEG 303
Query: 946 RHRHPGGYVCTDCGTNLKQK 1005
R+RHPG Y C DCG NLK +
Sbjct: 304 RYRHPGCYTCADCGLNLKMR 323
>ref|NP_001124499.1| PDZ and LIM domain protein 4 isoform 2 [Homo sapiens].
Length = 246
Score = 139 bits (349), Expect = 6e-33
Identities = 92/237 (38%), Positives = 127/237 (53%), Gaps = 3/237 (1%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA+A LC GD+I AI+GE+T MTHLE
Sbjct: 5 VTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRXXX 492
AQN+IKGC D++TL+V+R E + W P ++ K +++++ E Q+ +
Sbjct: 65 AQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQD-----GSPTTSRR 118
Query: 493 XXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQLP 672
+ + Y P N SS + L ++ + A LP
Sbjct: 119 PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSS-EATLPAQMSTLHVSPPPSADPARGLP 177
Query: 673 SG--LVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRS 834
+D SEVY+ML+E E + PKQS SF LQ +LE+ E G P+ G S
Sbjct: 178 RSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTSS 234
>ref|NP_001073583.1| LIM domain-binding protein 3 isoform 2 [Homo sapiens].
Length = 617
Score = 125 bits (314), Expect = 7e-29
Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 35/288 (12%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P V P++ + + P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + + II QYN P +YS + I A+ + A G +
Sbjct: 125 SALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLP-SGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEIL 786
+G LP L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SG------SLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMT 235
Query: 787 ESEEKGDPNKPSGFRS-------------VKAPVTKVAASIGNAQKLP 891
+E DP++ + RS AP T + S G A P
Sbjct: 236 GTEFMQDPDEEALRRSRPQASSYSPAVAASSAPATHTSYSEGPAAPAP 283
>ref|NP_001073585.1| LIM domain-binding protein 3 isoform 4 [Homo sapiens].
Length = 283
Score = 125 bits (313), Expect = 9e-29
Identities = 90/256 (35%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P V P++ + + P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + + II QYN P +YS + I A+ + A G +
Sbjct: 125 SALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLP-SGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEIL 786
+G LP L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SG------SLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMT 235
Query: 787 ESEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 236 GTEFMQDPDEEALRRS 251
>ref|NP_976227.1| PDZ and LIM domain protein 7 isoform 2 [Homo sapiens].
Length = 423
Score = 113 bits (282), Expect = 4e-25
Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 4/299 (1%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M + ++VL+GP PWGFRL GGKDF PL+ISR+TPG KAA A + +GD + +IDGEN +
Sbjct: 1 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGS 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 477
+TH+EAQNKI+ C + ++L ++R++ P + + P + + ++ L +
Sbjct: 61 LTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLRPLVPDASKQRLMENTED 120
Query: 478 NRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALD 657
R + ++ E++ + ++ A T
Sbjct: 121 WRPRPGTGQSRSFRILAHLTGTEFMQDP---DEEHLKKSSQVPRTEAPAPASSTPQEPWP 177
Query: 658 HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRS- 834
PS + + E P K ST P P+ +S
Sbjct: 178 GPTAPS----PTSRPPWAVDPAFAERYAPDKTSTVL---------TRHSQPATPTPLQSR 224
Query: 835 ---VKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQ 1002
V+A V N K P+C +C I G ++ HP +VC+ CG L++
Sbjct: 225 TSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEE 283
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,698,253
Number of extensions: 1406858
Number of successful extensions: 6088
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 6023
Number of HSP's successfully gapped: 36
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058557.2| PDZ and LIM domain protein 1 [Mus musculus]. 495 e-154
Alignment gi|NP_058078.1| PDZ and LIM domain protein 3 [Mus musculus]. 275 3e-83
Alignment gi|NP_062290.2| PDZ and LIM domain protein 4 [Mus musculus]. 204 1e-61
Alignment gi|NP_666090.1| PDZ and LIM domain protein 2 [Mus musculus]. 135 3e-36
Alignment gi|NP_001034164.1| LIM domain-binding protein 3 isoform f [Mus ... 127 1e-29
Alignment gi|NP_001034163.1| LIM domain-binding protein 3 isoform e [Mus ... 127 1e-29
Alignment gi|NP_001034162.1| LIM domain-binding protein 3 isoform d [Mus ... 127 1e-29
Alignment gi|NP_001034161.1| LIM domain-binding protein 3 isoform c [Mus ... 125 6e-29
Alignment gi|NP_001034165.1| LIM domain-binding protein 3 isoform g [Mus ... 112 7e-25
Alignment gi|NP_001034160.1| LIM domain-binding protein 3 isoform b [Mus ... 112 7e-25
>ref|NP_058557.2| PDZ and LIM domain protein 1 [Mus musculus].
Length = 327
Score = 495 bits (1275), Expect(2) = e-154
Identities = 246/296 (83%), Positives = 263/296 (88%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGD+ITAIDGE+TS+
Sbjct: 1 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDLITAIDGEDTSS 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 477
MTHLEAQNKIKGC DNMTLTV+RSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH
Sbjct: 61 MTHLEAQNKIKGCADNMTLTVSRSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH 120
Query: 478 NRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALD 657
NR R+ITNQYN+P GLYSSENIS+FN+A+ESKT+ASG+E N R +
Sbjct: 121 NRSAMPFTASPAPST--RVITNQYNSPTGLYSSENISNFNNAVESKTSASGEEANSRPVV 178
Query: 658 HSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 837
L+IDK+SEVYKMLQEKQELNEPPKQSTSFLVLQEILES+ KGDPNKPSGFRSV
Sbjct: 179 QPHPSGSLIIDKDSEVYKMLQEKQELNEPPKQSTSFLVLQEILESDGKGDPNKPSGFRSV 238
Query: 838 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
KAPVTKVAAS+GNAQKLP+CDKCGTGIVGVFVKLRD HRHP YVCTDCG NLKQK
Sbjct: 239 KAPVTKVAASVGNAQKLPICDKCGTGIVGVFVKLRDHHRHPECYVCTDCGINLKQK 294
Score = 69.3 bits (168), Expect(2) = e-154
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
+GHFFVEDQIYCEKHARERV PPEGYDVVTVF
Sbjct: 294 KGHFFVEDQIYCEKHARERVTPPEGYDVVTVF 325
>ref|NP_058078.1| PDZ and LIM domain protein 3 [Mus musculus].
Length = 316
Score = 275 bits (702), Expect(2) = 3e-83
Identities = 140/293 (47%), Positives = 189/293 (64%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q +VL GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + + L + R+E ++WSP V+E+GK HP+K+NL +EPQE IG+AHNR
Sbjct: 63 ADAQDRIKAASYQLCLKIDRAETRLWSPQVSEDGKAHPFKINLEAEPQEFKPIGTAHNRR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQ 666
++++ YN+P GLYS+ NI + A GQ G Q
Sbjct: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNI---------QDALHGQ-LRGLIPGSLQ 172
Query: 667 LPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAP 846
+ +S+VY+ML + ++ P+QS SF VLQ+++ G ++P+G RSV+AP
Sbjct: 173 NEPTASVPPQSDVYRMLHDNRDDPAAPRQSGSFRVLQDLVND---GPDDRPAGTRSVRAP 229
Query: 847 VTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
VTKV G+AQ++P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 230 VTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 282
Score = 53.1 bits (126), Expect(2) = 3e-83
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FFVE ++YCE HAR R PPEGYD VT++ K
Sbjct: 282 KGYFFVEGELYCETHARARTRPPEGYDTVTLYPK 315
>ref|NP_062290.2| PDZ and LIM domain protein 4 [Mus musculus].
Length = 330
Score = 204 bits (520), Expect(2) = 1e-61
Identities = 123/297 (41%), Positives = 166/297 (55%), Gaps = 3/297 (1%)
Frame = +1
Query: 124 TQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMT 303
T + L+GP PWGFRLVGG+DF PL ISRV GSKAA+A LC GD+I AI+GE+T MT
Sbjct: 2 THSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMT 61
Query: 304 HLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNR 483
HLEAQN+IKGC D++TL+V+R E K W ++ + H ++++ E Q+ S +
Sbjct: 62 HLEAQNRIKGCHDHLTLSVSRPENKNWPSAPDDKAQAH--RIHIDPESQDCSPATSRRSS 119
Query: 484 XXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHS 663
+ + Y P L N SS + L ++ +A A
Sbjct: 120 VSGISLEDNRSG-----LGSPYGQPPRLPVPHNGSSNEATLPAQMSALHVSPPTSADTAR 174
Query: 664 QLPSG--LVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRS 834
LP +D SEVY+ML+E E PKQS SF LQ +LE+ E GD G R+
Sbjct: 175 VLPRNRDCRVDLGSEVYRMLREPAEPTASEPKQSGSFRYLQGMLEAGEGGDRPGSGGPRN 234
Query: 835 VKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
+K +K+ A + Q LP C +CG GIVG VK RD+ HP ++C+DCG NLKQ+
Sbjct: 235 LKPAASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQR 291
Score = 51.2 bits (121), Expect(2) = 1e-61
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
G+FF+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 292 GYFFLDERLYCENHAKARVKPPEGYDVVAVY 322
>ref|NP_666090.1| PDZ and LIM domain protein 2 [Mus musculus].
Length = 349
Score = 135 bits (340), Expect(2) = 3e-36
Identities = 107/320 (33%), Positives = 152/320 (47%), Gaps = 33/320 (10%)
Frame = +1
Query: 145 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNK 324
GP PWGFR+ GG+DF P+ +++VT KA A+L GD+I AI+G++ NM H EAQ+K
Sbjct: 9 GPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSK 68
Query: 325 IKGCTDNMTLTVARSEQKIWSPLVTE-EGKRHPYKMNLASEPQEVLHI---GSAHNRXXX 492
I+ + L + RS+ SP T EG LA+ Q L + R
Sbjct: 69 IRQSASPLRLQLDRSQTA--SPGQTNGEGSLEV----LATRFQGSLRTHRDSQSSQRSAC 122
Query: 493 XXXXXXXXXXXXRIITNQYNNPAGLYSSENIS-SFNSALESKTAA--------------- 624
T +P L + I SF S S A
Sbjct: 123 FSPVSLSPRPCSPFSTPPPTSPVALSKEDMIGCSFQSLTHSPGLAAAHHLTYPGHPTSQQ 182
Query: 625 ----SGQETNGRALDHS----QLP--SGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVL 774
S ++ R L HS P S L ++++SEV+KMLQE ++ P+QS+SF +L
Sbjct: 183 AGHSSPSDSAVRVLLHSPGRPSSPRFSSLDLEEDSEVFKMLQENRQGRAAPRQSSSFRLL 242
Query: 775 QEILESEEKGDPNK--PSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRD- 945
QE LE+EE+G PS S + T + ++ KL C+KC I V++++
Sbjct: 243 QEALEAEERGGTPAFVPSSLSSQASLPT--SRALATPPKLHTCEKCSVNISNQAVRIQEG 300
Query: 946 RHRHPGGYVCTDCGTNLKQK 1005
R+RHPG Y C DCG NLK +
Sbjct: 301 RYRHPGCYTCADCGLNLKMR 320
Score = 35.4 bits (80), Expect(2) = 3e-36
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPP 1070
GHF+V +++YCEKHAR+R P
Sbjct: 321 GHFWVGNELYCEKHARQRYSMP 342
>ref|NP_001034164.1| LIM domain-binding protein 3 isoform f [Mus musculus].
Length = 288
Score = 127 bits (320), Expect = 1e-29
Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 21/255 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P + P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + II QYN P +YS + I A+ + A G +
Sbjct: 125 SVLKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEILE 789
+G + S L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SGASPLASLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG 241
Query: 790 SEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 242 TEYMQDPDEEALRRS 256
>ref|NP_001034163.1| LIM domain-binding protein 3 isoform e [Mus musculus].
Length = 684
Score = 127 bits (320), Expect = 1e-29
Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 21/255 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P + P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + II QYN P +YS + I A+ + A G +
Sbjct: 125 SVLKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEILE 789
+G + S L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SGASPLASLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG 241
Query: 790 SEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 242 TEYMQDPDEEALRRS 256
>ref|NP_001034162.1| LIM domain-binding protein 3 isoform d [Mus musculus].
Length = 622
Score = 127 bits (320), Expect = 1e-29
Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 21/255 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P + P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + II QYN P +YS + I A+ + A G +
Sbjct: 125 SVLKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEILE 789
+G + S L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SGASPLASLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG 241
Query: 790 SEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 242 TEYMQDPDEEALRRS 256
>ref|NP_001034161.1| LIM domain-binding protein 3 isoform c [Mus musculus].
Length = 679
Score = 125 bits (314), Expect = 6e-29
Identities = 90/256 (35%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI----WSPLVTEEGKRHPYKMNLASEP-----QEVLHI 465
AQNKIK + N++LT+ +S++ I +P + P++ +A+ P QE +
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNP 124
Query: 466 GSAHNRXXXXXXXXXXXXXXXR--IITNQYNNPAGLYSSENISSFNSALESKTAASGQET 639
+ + II QYN P +YS + I A+ + A G +
Sbjct: 125 SVLKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIM---DAIAGQAQAQGSDF 181
Query: 640 NGRALDHSQLP-SGLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVLQEIL 786
+G LP L +D S VY+ + + Q E QS SF +L ++
Sbjct: 182 SG------SLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMT 235
Query: 787 ESEEKGDPNKPSGFRS 834
+E DP++ + RS
Sbjct: 236 GTEYMQDPDEEALRRS 251
>ref|NP_001034165.1| LIM domain-binding protein 3 isoform g [Mus musculus].
Length = 327
Score = 112 bits (279), Expect = 7e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI 381
AQNKIK + N++LT+ +S++ I
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPI 87
>ref|NP_001034160.1| LIM domain-binding protein 3 isoform b [Mus musculus].
Length = 661
Score = 112 bits (279), Expect = 7e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI 381
AQNKIK + N++LT+ +S++ I
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPI 87
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,272,654
Number of extensions: 1174169
Number of successful extensions: 4826
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4784
Number of HSP's successfully gapped: 32
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359354.1| PREDICTED: PDZ and LIM domain protein 1-like... 333 e-107
Alignment gi|XP_003361169.1| PREDICTED: PDZ and LIM domain protein 1 [Sus... 356 1e-98
Alignment gi|NP_001001637.1| PDZ and LIM domain protein 3 [Sus scrofa]. 235 1e-71
Alignment gi|XP_003123959.1| PREDICTED: PDZ and LIM domain protein 4-like... 205 5e-62
Alignment gi|XP_003354321.1| PREDICTED: PDZ and LIM domain protein 4-like... 141 6e-34
Alignment gi|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883... 112 5e-25
Alignment gi|XP_003357126.1| PREDICTED: PDZ and LIM domain protein 5-like... 98 7e-21
Alignment gi|XP_003357125.1| PREDICTED: PDZ and LIM domain protein 5-like... 98 7e-21
Alignment gi|XP_003357124.1| PREDICTED: PDZ and LIM domain protein 5-like... 98 7e-21
Alignment gi|XP_003357123.1| PREDICTED: PDZ and LIM domain protein 5-like... 98 7e-21
>ref|XP_003359354.1| PREDICTED: PDZ and LIM domain protein 1-like [Sus scrofa].
Length = 316
Score = 333 bits (855), Expect(2) = e-107
Identities = 169/186 (90%), Positives = 169/186 (90%)
Frame = +1
Query: 448 QEVLHIGSAHNRXXXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAAS 627
QEVLHIGSAHNR RIITNQYNNPAGLYSSENISSFNSALESKTAAS
Sbjct: 98 QEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLYSSENISSFNSALESKTAAS 157
Query: 628 GQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGD 807
GQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGD
Sbjct: 158 GQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGD 217
Query: 808 PNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCG 987
PNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHP YVCTDCG
Sbjct: 218 PNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCG 277
Query: 988 TNLKQK 1005
TNLKQK
Sbjct: 278 TNLKQK 283
Score = 72.8 bits (177), Expect(2) = e-107
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+GHFFVEDQIYCEKHARERVIPPEGYDVVTVF K
Sbjct: 283 KGHFFVEDQIYCEKHARERVIPPEGYDVVTVFPK 316
>ref|XP_003361169.1| PREDICTED: PDZ and LIM domain protein 1 [Sus scrofa].
Length = 333
Score = 356 bits (913), Expect = 1e-98
Identities = 182/198 (91%), Positives = 183/198 (92%)
Frame = +1
Query: 211 RVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSP 390
+VTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSP
Sbjct: 69 QVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSP 128
Query: 391 LVTEEGKRHPYKMNLASEPQEVLHIGSAHNRXXXXXXXXXXXXXXXRIITNQYNNPAGLY 570
LVTEEGKRHPYKMNLASEPQEVLHIGSAHNR RIITNQYNNPAGLY
Sbjct: 129 LVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLY 188
Query: 571 SSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK 750
SSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK
Sbjct: 189 SSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPK 248
Query: 751 QSTSFLVLQEILESEEKG 804
QSTSFLVLQEILESEEKG
Sbjct: 249 QSTSFLVLQEILESEEKG 266
>ref|NP_001001637.1| PDZ and LIM domain protein 3 [Sus scrofa].
Length = 365
Score = 235 bits (599), Expect(2) = 1e-71
Identities = 133/340 (39%), Positives = 182/340 (53%), Gaps = 47/340 (13%)
Frame = +1
Query: 127 QQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTH 306
Q ++L GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 3 QNVILPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESMTH 62
Query: 307 LEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRX 486
+AQ++IK + L + R+E ++WSP VTE+GK HP+K+NL SEPQ+V + HN
Sbjct: 63 ADAQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFKINLESEPQDVNYFEHKHNIR 122
Query: 487 XXXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASG------------ 630
++ + P+G+ S+ +S T G
Sbjct: 123 PKPFIIPGR--------SSGCSTPSGIDGGSGRSTPSSVSTLSTICPGDLKVAAKMAPNI 174
Query: 631 ---QETNGRALDHSQLPSGLVIDKESEVYKMLQ--------EKQELNEP----------- 744
E G + H+Q + + + + + + LQ E ++EP
Sbjct: 175 PLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPSMSEPTTASVPPQSDV 234
Query: 745 -------------PKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQK 885
P+QS SF VLQE++ G ++P+G RSV+APVTK+ G QK
Sbjct: 235 YRMLHDNRNEPTQPRQSGSFRVLQELVND---GPDDRPAGTRSVRAPVTKIHGGAGGTQK 291
Query: 886 LPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
+P+CDKCG+GIVG VK RD++RHP +VC DC NLKQK
Sbjct: 292 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 331
Score = 53.5 bits (127), Expect(2) = 1e-71
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +3
Query: 1002 EGHFFVEDQIYCEKHARERVIPPEGYDVVTVFSK 1103
+G+FFVE ++YCE HAR R+ PPEGYD VT++ K
Sbjct: 331 KGYFFVEGELYCETHARARMRPPEGYDTVTLYPK 364
>ref|XP_003123959.1| PREDICTED: PDZ and LIM domain protein 4-like isoform 1 [Sus scrofa].
Length = 331
Score = 205 bits (522), Expect(2) = 5e-62
Identities = 125/296 (42%), Positives = 174/296 (58%), Gaps = 5/296 (1%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA A LC GD+I AI+GE+T MTHLE
Sbjct: 5 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGS-AHNRXX 489
AQN+IKGC D++TL+V+R E + W P EE K +++++ E Q+ GS A +R
Sbjct: 65 AQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQD----GSPATSRRP 119
Query: 490 XXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHS-- 663
+ + Y L + N SS + + ++ + + ++D +
Sbjct: 120 SAAGTGPEDGRSG--LGSPYGQSPRLPAPHNGSSSEAPMLAQMSTL-HVSPPHSIDPARG 176
Query: 664 -QLPSGLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSV 837
Q +D SEVY+MLQE E + PKQS SF LQ +LE+ E G+ P+G R++
Sbjct: 177 LQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNL 236
Query: 838 KAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPGGYVCTDCGTNLKQK 1005
K P +K+ A + Q LP C +CG GIVG VK RD+ HP ++C+DCG NLKQ+
Sbjct: 237 KPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQR 292
Score = 51.2 bits (121), Expect(2) = 5e-62
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 1005 GHFFVEDQIYCEKHARERVIPPEGYDVVTVF 1097
G+FF+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 293 GYFFLDERLYCESHAKARVKPPEGYDVVAVY 323
>ref|XP_003354321.1| PREDICTED: PDZ and LIM domain protein 4-like isoform 2 [Sus
scrofa].
Length = 247
Score = 141 bits (356), Expect = 6e-34
Identities = 95/231 (41%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA A LC GD+I AI+GE+T MTHLE
Sbjct: 5 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGS-AHNRXX 489
AQN+IKGC D++TL+V+R E + W P EE K +++++ E Q+ GS A +R
Sbjct: 65 AQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQD----GSPATSRRP 119
Query: 490 XXXXXXXXXXXXXRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHS-- 663
+ + Y L + N SS + + ++ + + ++D +
Sbjct: 120 SAAGTGPEDGRSG--LGSPYGQSPRLPAPHNGSSSEAPMLAQMSTL-HVSPPHSIDPARG 176
Query: 664 -QLPSGLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDP 810
Q +D SEVY+MLQE E + PKQS SF LQ +LE+ E G P
Sbjct: 177 LQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGGP 227
>ref|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883 [Sus scrofa].
Length = 715
Score = 112 bits (279), Expect = 5e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +1
Query: 133 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLE 312
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 313 AQNKIKGCTDNMTLTVARSEQKI 381
AQNKIK + N++LT+ +S++ I
Sbjct: 65 AQNKIKSASYNLSLTLQKSKRPI 87
>ref|XP_003357126.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 4 [Sus
scrofa].
Length = 486
Score = 98.2 bits (243), Expect = 7e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M+ + L GP PWGFRL GGKDF PL IS + G KA+ AN+ IGDV+ +IDG +
Sbjct: 1 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARS 369
MTHLEAQNKIKG T ++ +T+ R+
Sbjct: 61 MTHLEAQNKIKGSTGSLNMTLQRA 84
>ref|XP_003357125.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 3 [Sus
scrofa].
Length = 595
Score = 98.2 bits (243), Expect = 7e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M+ + L GP PWGFRL GGKDF PL IS + G KA+ AN+ IGDV+ +IDG +
Sbjct: 1 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARS 369
MTHLEAQNKIKG T ++ +T+ R+
Sbjct: 61 MTHLEAQNKIKGSTGSLNMTLQRA 84
>ref|XP_003357124.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 2 [Sus
scrofa].
Length = 234
Score = 98.2 bits (243), Expect = 7e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M+ + L GP PWGFRL GGKDF PL IS + G KA+ AN+ IGDV+ +IDG +
Sbjct: 1 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARS 369
MTHLEAQNKIKG T ++ +T+ R+
Sbjct: 61 MTHLEAQNKIKGSTGSLNMTLQRA 84
>ref|XP_003357123.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 1 [Sus
scrofa].
Length = 214
Score = 98.2 bits (243), Expect = 7e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +1
Query: 118 MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSN 297
M+ + L GP PWGFRL GGKDF PL IS + G KA+ AN+ IGDV+ +IDG +
Sbjct: 1 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQG 60
Query: 298 MTHLEAQNKIKGCTDNMTLTVARS 369
MTHLEAQNKIKG T ++ +T+ R+
Sbjct: 61 MTHLEAQNKIKGSTGSLNMTLQRA 84
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,084,298
Number of extensions: 898573
Number of successful extensions: 3827
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3798
Number of HSP's successfully gapped: 20
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002544
(1120 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 418 e-114
gb|JH118666.1| Sus scrofa unplaced genomic scaffold ChrUScaf1552 396 e-107
>Sscrofa_Chr14
|| Length = 153851969
Score = 418 bits (211), Expect = e-114
Identities = 214/215 (99%)
Strand = Plus / Minus
Query: 1 aggctcccagggcccaagccgcgcgctctttttccgacagctgccggggagcccagcgcg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116426077 aggctcccggggcccaagccgcgcgctctttttccgacagctgccggggagcccagcgcg 116426018
Query: 61 ccgttctgcctcctgccaggtctgtccgctcgggtcgccgcccgccgtcaccgcgccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116426017 ccgttctgcctcctgccaggtctgtccgctcgggtcgccgcccgccgtcaccgcgccatg 116425958
Query: 121 accacccagcaaattgttctccagggcccggggccgtggggcttccgtctcgtggggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116425957 accacccagcaaattgttctccagggcccggggccgtggggcttccgtctcgtggggggc 116425898
Query: 181 aaggacttcgagcagcctctcgccatctctcgggt 215
|||||||||||||||||||||||||||||||||||
Sbjct: 116425897 aaggacttcgagcagcctctcgccatctctcgggt 116425863
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 451 gaggtcttacatataggaagcgcccacaaccggagtgccatgccctttaccgcctcacct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116401266 gaggtcttacatataggaagcgcccacaaccggagtgccatgccctttaccgcctcacct 116401207
Query: 511 gcctccagcgcttcccccaggatcatcacaaaccagtacaacaacccagctggcctctac 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116401206 gcctccagcgcttcccccaggatcatcacaaaccagtacaacaacccagctggcctctac 116401147
Query: 571 tcttctgaaaacatctccagcttcaacagtgccttggagtcaaagacggcagccagtggg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116401146 tcttctgaaaacatctccagcttcaacagtgccttggagtcaaagacggcagccagtggg 116401087
Query: 631 caagagacgaatggcagagc 650
||||||||||||||||||||
Sbjct: 116401086 caagagacgaatggcagagc 116401067
Score = 351 bits (177), Expect = 5e-94
Identities = 196/201 (97%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 921 tggcgtgtttgtgaaactgcgggaccgtcaccgccaccctggaggttacgtgtgcaccga 980
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 116377591 tggcgtgtttgtgaaactgcgggaccgtcaccgccaccctgagtgttacgtgtgcaccga 116377532
Query: 981 ctgtggcaccaacctgaaacagaagg-ccatttctttgtggaggatcagatctactgtga 1039
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 116377531 ctgtggcaccaacctgaaacagaagggccatttctttgtggaggatcagatctactgtga 116377472
Query: 1040 aaagcacgcccgggagcgggtcattccacccgagggctacgacgtggtcactgtgttttc 1099
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 116377471 aaagcacgcccgggagcgggtcattccacccgagggctacgacgtggtcactgtgtttcc 116377412
Query: 1100 caagtgagccggcagcttggc 1120
|||||||||||||||||||||
Sbjct: 116377411 caagtgagccggcagcttggc 116377391
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 651 cttagaccattctcagcttccaagcgggctcgtcatcgacaaagaatctgaagtttacaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116387734 cttagaccattctcagcttccaagcgggctcgtcatcgacaaagaatctgaagtttacaa 116387675
Query: 711 gatgcttcaggagaaacaggagttaaatgagcctccgaaacagtccacttcgttcctggt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116387674 gatgcttcaggagaaacaggagttaaatgagcctccgaaacagtccacttcgttcctggt 116387615
Query: 771 tttgcaggaaatcctggagtctgaggaaaaagg 803
|||||||||||||||||||||||||||||||||
Sbjct: 116387614 tttgcaggaaatcctggagtctgaggaaaaagg 116387582
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 801 aggggatcccaacaagccctcaggattcagaagtgttaaggctccagtcaccaaagtggc 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116378165 aggggatcccaacaagccctcaggattcagaagtgttaaggctccagtcaccaaagtggc 116378106
Query: 861 tgcatcgattggcaatgcccagaagttgcccatgtgtgacaaatgtggcactggcattgt 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116378105 tgcatcgattggcaatgcccagaagttgcccatgtgtgacaaatgtggcactggcattgt 116378046
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 363 cagatctgaacagaaaatctggtctcctctggtgacagaggaagggaaacgtcacccata 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116406486 cagatctgaacagaaaatctggtctcctctggtgacagaggaagggaaacgtcacccata 116406427
Query: 423 caagatgaatttagcctctgaaccccaag 451
|||||||||||||||||||||||||||||
Sbjct: 116406426 caagatgaatttagcctctgaaccccaag 116406398
>gb|JH118666.1| Sus scrofa unplaced genomic scaffold ChrUScaf1552
Length = 55440
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 451 gaggtcttacatataggaagcgcccacaaccggagtgccatgccctttaccgcctcacct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25717 gaggtcttacatataggaagcgcccacaaccggagtgccatgccctttaccgcctcacct 25658
Query: 511 gcctccagcgcttcccccaggatcatcacaaaccagtacaacaacccagctggcctctac 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25657 gcctccagcgcttcccccaggatcatcacaaaccagtacaacaacccagctggcctctac 25598
Query: 571 tcttctgaaaacatctccagcttcaacagtgccttggagtcaaagacggcagccagtggg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25597 tcttctgaaaacatctccagcttcaacagtgccttggagtcaaagacggcagccagtggg 25538
Query: 631 caagagacgaatggcagagc 650
||||||||||||||||||||
Sbjct: 25537 caagagacgaatggcagagc 25518
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 651 cttagaccattctcagcttccaagcgggctcgtcatcgacaaagaatctgaagtttacaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13782 cttagaccattctcagcttccaagcgggctcgtcatcgacaaagaatctgaagtttacaa 13723
Query: 711 gatgcttcaggagaaacaggagttaaatgagcctccgaaacagtccacttcgttcctggt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13722 gatgcttcaggagaaacaggagttaaatgagcctccgaaacagtccacttcgttcctggt 13663
Query: 771 tttgcaggaaatcctggagtctgaggaaaaagg 803
|||||||||||||||||||||||||||||||||
Sbjct: 13662 tttgcaggaaatcctggagtctgaggaaaaagg 13630
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 213 ggtcactcccgggagcaaggctgcgatagctaacttatgtattggagatgtaatcacagc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29727 ggtcactcccgggagcaaggctgcgatagctaacttatgtattggagatgtaatcacagc 29668
Query: 273 cattgacggggaaaatactagcaacatgacccacttggaagctcagaacaaaatcaaggg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29667 cattgacggggaaaatactagcaacatgacccacttggaagctcagaacaaaatcaaggg 29608
Query: 333 ctgcacagacaacatgactctcacggtagccag 365
|||||||||||||||||||||||||||||||||
Sbjct: 29607 ctgcacagacaacatgactctcacggtagccag 29575
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,787,151
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 9
Length of query: 1120
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1099
Effective length of database: 2,808,413,156
Effective search space: 3086446058444
Effective search space used: 3086446058444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)