Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692276.1| PREDICTED: superoxide dismutase-like [Bos ta... 275 3e-74
Alignment gi|XP_584414.4| PREDICTED: superoxide dismutase-like [Bos tauru... 275 3e-74
Alignment gi|NP_777040.1| superoxide dismutase [Cu-Zn] [Bos taurus]. 271 5e-73
Alignment gi|NP_001039652.1| copper chaperone for superoxide dismutase [B... 114 2e-25
Alignment gi|NP_001076079.1| extracellular superoxide dismutase [Bos taur... 108 5e-24
>ref|XP_002692276.1| PREDICTED: superoxide dismutase-like [Bos taurus].
Length = 191
Score = 275 bits (704), Expect = 3e-74
Identities = 141/179 (78%), Positives = 151/179 (84%), Gaps = 5/179 (2%)
Frame = +3
Query: 42 CGLSRSFWYPPSPD---RSAPP--RVMATKAVCVLKGDGPVQGTIYFELKGEKTVVVTGT 206
C L R F Y R+ P RVMATKAVCVLKGDGPVQGTI+FE KG TVVVTG+
Sbjct: 14 CVLRRHFLYLVGASLAVRAGEPFSRVMATKAVCVLKGDGPVQGTIHFEAKGN-TVVVTGS 72
Query: 207 IKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGV 386
I GL EGDHGFHVHQFGDNTQGCTSAGPHFNP SKKH GPKD+ERHVGDLGNVTA K+GV
Sbjct: 73 ITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHSGPKDEERHVGDLGNVTADKNGV 132
Query: 387 ATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
A V I DS+I+LSG++SIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI +
Sbjct: 133 AVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGIAK 191
>ref|XP_584414.4| PREDICTED: superoxide dismutase-like [Bos taurus].
Length = 191
Score = 275 bits (704), Expect = 3e-74
Identities = 141/179 (78%), Positives = 151/179 (84%), Gaps = 5/179 (2%)
Frame = +3
Query: 42 CGLSRSFWYPPSPD---RSAPP--RVMATKAVCVLKGDGPVQGTIYFELKGEKTVVVTGT 206
C L R F Y R+ P RVMATKAVCVLKGDGPVQGTI+FE KG TVVVTG+
Sbjct: 14 CVLRRHFLYLVGASLAVRAGEPFSRVMATKAVCVLKGDGPVQGTIHFEAKGN-TVVVTGS 72
Query: 207 IKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGV 386
I GL EGDHGFHVHQFGDNTQGCTSAGPHFNP SKKH GPKD+ERHVGDLGNVTA K+GV
Sbjct: 73 ITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHSGPKDEERHVGDLGNVTADKNGV 132
Query: 387 ATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
A V I DS+I+LSG++SIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI +
Sbjct: 133 AVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGIAK 191
>ref|NP_777040.1| superoxide dismutase [Cu-Zn] [Bos taurus].
Length = 152
Score = 271 bits (694), Expect = 5e-73
Identities = 132/153 (86%), Positives = 142/153 (92%)
Frame = +3
Query: 105 MATKAVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSA 284
MATKAVCVLKGDGPVQGTI+FE KG+ TVVVTG+I GL EGDHGFHVHQFGDNTQGCTSA
Sbjct: 1 MATKAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSA 59
Query: 285 GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVH 464
GPHFNP SKKHGGPKD+ERHVGDLGNVTA K+GVA V I D +I+LSG++SIIGRTMVVH
Sbjct: 60 GPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVH 119
Query: 465 EKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
EKPDDLGRGGNEESTKTGNAGSRLACGVIGI +
Sbjct: 120 EKPDDLGRGGNEESTKTGNAGSRLACGVIGIAK 152
>ref|NP_001039652.1| copper chaperone for superoxide dismutase [Bos taurus].
Length = 216
Score = 114 bits (284), Expect = 2e-25
Identities = 54/97 (55%), Positives = 63/97 (64%)
Frame = +3
Query: 117 AVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF 296
AV +L G GPVQG + F + ++ GTI GL G HG HVHQFGD T+ C S G HF
Sbjct: 89 AVAILGGPGPVQGVVRFLQLTPERCLIEGTIDGLQPGLHGLHVHQFGDLTRNCNSCGDHF 148
Query: 297 NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIED 407
NP+ HGGP+D ERH GDLGNV A +DG A IED
Sbjct: 149 NPDGMSHGGPQDSERHRGDLGNVRADEDGRAVFRIED 185
>ref|NP_001076079.1| extracellular superoxide dismutase [Bos taurus].
Length = 241
Score = 108 bits (271), Expect = 5e-24
Identities = 55/110 (50%), Positives = 68/110 (61%)
Frame = +3
Query: 228 DHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIED 407
+ HVHQFGD +QGC S GPH+NP S H +H GD GN A +DG Y
Sbjct: 111 NRAIHVHQFGDLSQGCDSTGPHYNPMSVPH------PQHPGDFGNF-AVRDGQVWKYRSG 163
Query: 408 SVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 557
+L+G HSI GR +VVH DD+GRGGN+ S + GNAG RLAC V+G+
Sbjct: 164 LAASLTGPHSIAGRAVVVHAGEDDMGRGGNQASLENGNAGRRLACCVVGL 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,128,004
Number of extensions: 895974
Number of successful extensions: 3036
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3026
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003035.1| superoxide dismutase [Cu-Zn] [Canis lupus fa... 260 1e-69
Alignment gi|NP_001181899.1| copper chaperone for superoxide dismutase [C... 154 9e-38
Alignment gi|XP_545973.2| PREDICTED: similar to Extracellular superoxide ... 100 3e-21
>ref|NP_001003035.1| superoxide dismutase [Cu-Zn] [Canis lupus familiaris].
Length = 153
Score = 260 bits (665), Expect = 1e-69
Identities = 127/153 (83%), Positives = 135/153 (88%)
Frame = +3
Query: 105 MATKAVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSA 284
M KAVCVLKG GPV+GTI+F KG VVV+GTI GL EG+HGFHVHQF D TQGCTSA
Sbjct: 1 MEMKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSA 60
Query: 285 GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVH 464
GPHFNP SKKHGGPKDQERHVGDLGNVTAGKDGVA V IEDS+IALSGD+SIIGRTMVVH
Sbjct: 61 GPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVH 120
Query: 465 EKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
EK DDLG+G NEEST+TGNAGSRLACGVIGI Q
Sbjct: 121 EKRDDLGKGDNEESTQTGNAGSRLACGVIGIAQ 153
>ref|NP_001181899.1| copper chaperone for superoxide dismutase [Canis lupus familiaris].
Length = 274
Score = 154 bits (390), Expect = 9e-38
Identities = 77/145 (53%), Positives = 94/145 (64%)
Frame = +3
Query: 117 AVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF 296
AV +L+G GPVQG + F + ++ GTI GL G HG HVHQFGD T C S G HF
Sbjct: 89 AVAILEGPGPVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQFGDLTGNCNSCGDHF 148
Query: 297 NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPD 476
NP+ HGGPKD +RH GDLGNV AG DG A IED + + +IGR++V+ E D
Sbjct: 149 NPDGASHGGPKDSDRHRGDLGNVHAGTDGRAIFRIEDEQLKV---WDVIGRSLVIDEGED 205
Query: 477 DLGRGGNEESTKTGNAGSRLACGVI 551
DLG GG+ S TGN+G RLACG+I
Sbjct: 206 DLGLGGHPLSKVTGNSGERLACGII 230
>ref|XP_545973.2| PREDICTED: similar to Extracellular superoxide dismutase [Cu-Zn]
precursor (EC-SOD) [Canis familiaris].
Length = 257
Score = 100 bits (248), Expect = 3e-21
Identities = 51/106 (48%), Positives = 65/106 (61%)
Frame = +3
Query: 240 HVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIA 419
HVH+FGD + GC +AGPH+NP + H H GD GN A +DG + +
Sbjct: 131 HVHRFGDLSPGCEAAGPHYNPRAAPH------PHHPGDFGNF-AVRDGRVRKHRGGLAAS 183
Query: 420 LSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 557
L+G HSI+GR +VVH DDLGRGG+ S GNAG RLAC V+G+
Sbjct: 184 LAGPHSIVGRAVVVHAGEDDLGRGGDPASLDHGNAGRRLACCVVGV 229
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,498,224
Number of extensions: 908475
Number of successful extensions: 3214
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3208
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000445.1| superoxide dismutase [Cu-Zn] [Homo sapiens]. 256 2e-68
Alignment gi|NP_005116.1| copper chaperone for superoxide dismutase [Homo... 146 2e-35
Alignment gi|NP_003093.2| extracellular superoxide dismutase [Cu-Zn] prec... 108 5e-24
>ref|NP_000445.1| superoxide dismutase [Cu-Zn] [Homo sapiens].
Length = 154
Score = 256 bits (654), Expect = 2e-68
Identities = 127/154 (82%), Positives = 134/154 (87%), Gaps = 1/154 (0%)
Frame = +3
Query: 105 MATKAVCVLKGDGPVQGTIYFELKGEK-TVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTS 281
MATKAVCVLKGDGPVQG I FE K V V G+IKGL EG HGFHVH+FGDNT GCTS
Sbjct: 1 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTS 60
Query: 282 AGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVV 461
AGPHFNP S+KHGGPKD+ERHVGDLGNVTA KDGVA V IEDSVI+LSGDH IIGRT+VV
Sbjct: 61 AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV 120
Query: 462 HEKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
HEK DDLG+GGNEESTKTGNAGSRLACGVIGI Q
Sbjct: 121 HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>ref|NP_005116.1| copper chaperone for superoxide dismutase [Homo sapiens].
Length = 274
Score = 146 bits (369), Expect = 2e-35
Identities = 72/145 (49%), Positives = 92/145 (63%)
Frame = +3
Query: 117 AVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF 296
AV +L G G VQG + F + ++ GTI GL G HG HVHQ+GD T C S G HF
Sbjct: 89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHF 148
Query: 297 NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPD 476
NP+ HGGP+D +RH GDLGNV A DG A +ED + + +IGR++++ E D
Sbjct: 149 NPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEGED 205
Query: 477 DLGRGGNEESTKTGNAGSRLACGVI 551
DLGRGG+ S TGN+G RLACG+I
Sbjct: 206 DLGRGGHPLSKITGNSGERLACGII 230
>ref|NP_003093.2| extracellular superoxide dismutase [Cu-Zn] precursor [Homo
sapiens].
Length = 240
Score = 108 bits (271), Expect = 5e-24
Identities = 55/106 (51%), Positives = 68/106 (64%)
Frame = +3
Query: 240 HVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIA 419
HVHQFGD +QGC S GPH+NP + H +H GD GN A +DG Y +
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNF-AVRDGSLWRYRAGLAAS 166
Query: 420 LSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 557
L+G HSI+GR +VVH DDLGRGGN+ S + GNAG RLAC V+G+
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGV 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,943,837
Number of extensions: 896434
Number of successful extensions: 3045
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3027
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035564.1| superoxide dismutase [Cu-Zn] [Mus musculus]. 265 5e-71
Alignment gi|NP_058588.1| copper chaperone for superoxide dismutase [Mus ... 148 5e-36
Alignment gi|NP_035565.1| extracellular superoxide dismutase [Cu-Zn] prec... 100 3e-21
>ref|NP_035564.1| superoxide dismutase [Cu-Zn] [Mus musculus].
Length = 154
Score = 265 bits (676), Expect = 5e-71
Identities = 128/154 (83%), Positives = 137/154 (88%), Gaps = 1/154 (0%)
Frame = +3
Query: 105 MATKAVCVLKGDGPVQGTIYFELKGE-KTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTS 281
MA KAVCVLKGDGPVQGTI+FE K + VV++G I GL EG HGFHVHQ+GDNTQGCTS
Sbjct: 1 MAMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTS 60
Query: 282 AGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVV 461
AGPHFNP SKKHGGP D+ERHVGDLGNVTAGKDGVA V IED VI+LSG+HSIIGRTMVV
Sbjct: 61 AGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVV 120
Query: 462 HEKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
HEK DDLG+GGNEESTKTGNAGSRLACGVIGI Q
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>ref|NP_058588.1| copper chaperone for superoxide dismutase [Mus musculus].
Length = 274
Score = 148 bits (374), Expect = 5e-36
Identities = 73/145 (50%), Positives = 94/145 (64%)
Frame = +3
Query: 117 AVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF 296
AV +L+G G +QG + F + ++ GTI GL G HG HVHQ+GD T+ C S G HF
Sbjct: 89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHF 148
Query: 297 NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPD 476
NP+ HGGP+D +RH GDLGNV A G AT IED + + +IGR++V+ E D
Sbjct: 149 NPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV---WDVIGRSLVIDEGED 205
Query: 477 DLGRGGNEESTKTGNAGSRLACGVI 551
DLGRGG+ S TGN+G RLACG+I
Sbjct: 206 DLGRGGHPLSKITGNSGKRLACGII 230
>ref|NP_035565.1| extracellular superoxide dismutase [Cu-Zn] precursor [Mus
musculus].
Length = 251
Score = 99.8 bits (247), Expect = 3e-21
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 228 DHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIED 407
+ HVH+FGD +QGC S GPH+NP H +H GD GN ++G +
Sbjct: 124 NRAIHVHEFGDLSQGCDSTGPHYNPMEVPH------PQHPGDFGNFVV-RNGQLWRHRVG 176
Query: 408 SVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 554
+L+G H+I+GR++VVH DDLG+GGN+ S + GNAG RLAC V+G
Sbjct: 177 LTASLAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,984,041
Number of extensions: 763303
Number of successful extensions: 2425
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2419
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177351.1| superoxide dismutase [Cu-Zn] [Sus scrofa]. 317 8e-87
Alignment gi|NP_001001866.1| copper chaperone for superoxide dismutase [S... 154 9e-38
Alignment gi|NP_001072156.1| extracellular superoxide dismutase [Sus scro... 102 2e-22
>ref|NP_001177351.1| superoxide dismutase [Cu-Zn] [Sus scrofa].
Length = 153
Score = 317 bits (811), Expect = 8e-87
Identities = 152/153 (99%), Positives = 153/153 (100%)
Frame = +3
Query: 105 MATKAVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSA 284
MATKAVCVLKGDGPVQGTIYFELKGEKTV+VTGTIKGLAEGDHGFHVHQFGDNTQGCTSA
Sbjct: 1 MATKAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSA 60
Query: 285 GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVH 464
GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVH
Sbjct: 61 GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVH 120
Query: 465 EKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 563
EKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ
Sbjct: 121 EKPDDLGRGGNEESTKTGNAGSRLACGVIGITQ 153
>ref|NP_001001866.1| copper chaperone for superoxide dismutase [Sus scrofa].
Length = 274
Score = 154 bits (388), Expect = 9e-38
Identities = 75/145 (51%), Positives = 95/145 (65%)
Frame = +3
Query: 117 AVCVLKGDGPVQGTIYFELKGEKTVVVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF 296
AV +L G GPVQG + F + ++ GTI GL G HG HVHQFGD T+ C S G HF
Sbjct: 89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHF 148
Query: 297 NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPD 476
NP+ HGGP+D +RH GDLGNV A DG A +ED ++ + +IGR++V+ E D
Sbjct: 149 NPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKV---WDVIGRSLVIDEGED 205
Query: 477 DLGRGGNEESTKTGNAGSRLACGVI 551
DLGRGG+ S TGN+G RLACG+I
Sbjct: 206 DLGRGGHPLSKITGNSGERLACGII 230
>ref|NP_001072156.1| extracellular superoxide dismutase [Sus scrofa].
Length = 244
Score = 102 bits (255), Expect = 2e-22
Identities = 54/106 (50%), Positives = 64/106 (60%)
Frame = +3
Query: 240 HVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIA 419
HVHQFGD +QGC S GPH+NP H +H GD GN A +DG Y +
Sbjct: 118 HVHQFGDLSQGCDSTGPHYNPLEVPH------PQHPGDFGNF-AVRDGQIWRYRSSPGAS 170
Query: 420 LSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 557
L G HSI GR +VVH DDLGRGGN+ S + GNAG RLAC V+ +
Sbjct: 171 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,419,939
Number of extensions: 591207
Number of successful extensions: 1935
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1932
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002546
(936 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 844 0.0
Sscrofa_Chr01 123 2e-25
Sscrofa_Chr02 62 6e-07
>Sscrofa_Chr13
|| Length = 218635234
Score = 844 bits (426), Expect = 0.0
Identities = 449/458 (98%), Gaps = 9/458 (1%)
Strand = Plus / Plus
Query: 458 ggtccatgaaaaaccagatgacttgggcagaggtggaaatgaagaaagtacaaagacggg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629494 ggtccatgaaaaaccagatgacttgggcagaggtggaaatgaagaaagtacaaagacggg 205629553
Query: 518 aaatgctggaagtcgtttggcctgtggtgtaattgggatcacccagtaaacattccctca 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629554 aaatgctggaagtcgtttggcctgtggtgtaattgggatcacccagtaaacattccctca 205629613
Query: 578 tgccatggtctgaatgccagtaactcatctgttatcttgctagttgtagttgtagaaatt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629614 tgccatggtctgaatgccagtaactcatctgttatcttgctagttgtagttgtagaaatt 205629673
Query: 638 taacttgataaacattaaacactgtaaccttagaagtgttaatttgtgtgacttttaaaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629674 taacttgataaacattaaacactgtaaccttagaagtgttaatttgtgtgacttttaaaa 205629733
Query: 698 attgctttaagtacctataatgagaactgatttacgaacacttggaagatgtgtataatt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629734 attgctttaagtacctataatgagaactgatttacgaacacttggaagatgtgtataatt 205629793
Query: 758 ttataaaactcagacgtaattaaaatgtctatttcagtgatctctgtaccttgccagact 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205629794 ttataaaactcagacgtaattaaaatgtctatttcagtgatctctgtaccttgccagact 205629853
Query: 818 taatcacatatgaatattaaactgaatattattagttgtctgaatttctccagttctcac 877
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205629854 taatcacatatgaatattaaac---------ttagttgtctgaatttctccagttctcac 205629904
Query: 878 tcaagcctgcaataaacaaatactctctatggcactgt 915
||||||||||||||||||||||||||||||||||||||
Sbjct: 205629905 tcaagcctgcaataaacaaatactctctatggcactgt 205629942
Score = 317 bits (160), Expect = 6e-84
Identities = 169/172 (98%)
Strand = Plus / Plus
Query: 6 cacggcgccgccggctcggtttgcgtcggcgtgtactgcggcctctcccgcagcttctgg 65
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205620971 cacggtgccgccggctcggtttgcgtcggcgtgtactgcggcctctcccgctgcttctgg 205621030
Query: 66 taccctcccagcccggaccggagcgcgcccccgcgagtcatggcgacgaaggccgtgtgt 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205621031 aaccctcccagcccggaccggagcgcgcccccgcgagtcatggcgacgaaggccgtgtgt 205621090
Query: 126 gtgctgaagggcgacggcccggtgcagggcaccatctacttcgagctgaagg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205621091 gtgctgaagggcgacggcccggtgcagggcaccatctacttcgagctgaagg 205621142
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 339 aggcacgttggagacctgggcaatgtgactgctggcaaagatggtgtggccactgtgtac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205628271 aggcacgttggagacctgggcaatgtgactgctggcaaagatggtgtggccactgtgtac 205628330
Query: 399 atcgaagattctgtgatcgccctctcgggagaccattccatcattggccgcacaatggtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205628331 atcgaagattctgtgatcgccctctcgggagaccattccatcattggccgcacaatggtg 205628390
Query: 459 gt 460
||
Sbjct: 205628391 gt 205628392
Score = 163 bits (82), Expect = 2e-37
Identities = 94/98 (95%)
Strand = Plus / Plus
Query: 174 aagggagagaagacagtcgtagtaacgggaaccattaaaggactggctgaaggtgatcat 233
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205626022 aagggagagaagacagtgttagtaacgggaaccattaaaggactggctgaaggtgatcat 205626081
Query: 234 ggattccatgtccatcaatttggggataatacacaagg 271
||||||||||||||||| ||||| ||||||||||||||
Sbjct: 205626082 ggattccatgtccatcagtttggagataatacacaagg 205626119
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 269 aggctgtaccagtgcaggtcctcacttcaatcctgaatccaaaaaacatggtgggccaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205627447 aggctgtaccagtgcaggtcctcacttcaatcctgaatccaaaaaacatggtgggccaaa 205627506
Query: 329 ggatcaagagagg 341
|||||||||||||
Sbjct: 205627507 ggatcaagagagg 205627519
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 2e-25
Identities = 177/213 (83%), Gaps = 8/213 (3%)
Strand = Plus / Minus
Query: 486 agaggtggaaatgaagaaagtacaaagacgggaaatgctggaagtcgtttggcctgtggt 545
||||||||||||||||||| ||||||||| ||||||| ||||| || || ||||||||||
Sbjct: 269783721 agaggtggaaatgaagaaaatacaaagacaggaaatggtggaaatcattaggcctgtggt 269783662
Query: 546 gtaattgggatcacccagtaaacattccctcatgccatggtctgaatgccagtaactcat 605
||||||| ||| ||| |||||||| || | | |||||||| | |||||||||
Sbjct: 269783661 gtaattgagattgcccccaaaacattctct-aggatgtggtctgagccctagtaactcac 269783603
Query: 606 ctgttatcttgctagttgtagttgtagaaatttaacttgataaacattaaacactgtaac 665
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 269783602 ctgttatcttgctagttgtag------aaatttaacttgataaacattaatcactgtaac 269783549
Query: 666 cttagaagtgttaatttgtgtgacttttaaaaa 698
||| |||| |||||||| |||||||| ||||
Sbjct: 269783548 cttgaaagt-ataatttgtatgactttttaaaa 269783517
>Sscrofa_Chr02
|| Length = 162569375
Score = 61.9 bits (31), Expect = 6e-07
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 642 ttgataaacattaaacactgtaaccttagaagtgt 676
|||||||||||||||||||||||||||| ||||||
Sbjct: 39674928 ttgataaacattaaacactgtaaccttaaaagtgt 39674894
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,719,232
Number of extensions: 202
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 9
Length of query: 936
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 915
Effective length of database: 2,808,413,156
Effective search space: 2569698037740
Effective search space used: 2569698037740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)