Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069119.1| pyridoxal kinase [Bos taurus]. 518 e-147
>ref|NP_001069119.1| pyridoxal kinase [Bos taurus].
Length = 312
Score = 518 bits (1334), Expect = e-147
Identities = 252/283 (89%), Positives = 274/283 (96%)
Frame = +3
Query: 168 MEQECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNSD 347
ME+ECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGY+HWKGQVLNSD
Sbjct: 1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSD 60
Query: 348 ELHALYEGLKLNNVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDKW 527
EL LY+GLKLN+VN+YDYVLTGYTRDKSFLAMVVDIV+ELKQQNPRLVYVCDPVMGD+
Sbjct: 61 ELQELYDGLKLNSVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQR 120
Query: 528 DGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMGP 707
DGEG+MYVP+DLLPVYREKVVPVADIITPNQFEAELLTGR+IH++EEAL VMDMLH+MGP
Sbjct: 121 DGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHTQEEALEVMDMLHSMGP 180
Query: 708 DTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAAM 887
DTVVITSSDL SPRG DYL+ALGSQRTR+PDGS+ TQRIRME+ KVDAVFVGTGDLFAAM
Sbjct: 181 DTVVITSSDLLSPRGSDYLMALGSQRTRAPDGSMVTQRIRMEMHKVDAVFVGTGDLFAAM 240
Query: 888 LLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAKTKAGKGLK 1016
LLAWTHKHPNNLKVACEKTVSAMHHVL+RTI+CAK K+G+G+K
Sbjct: 241 LLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVK 283
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,738,257
Number of extensions: 1101849
Number of successful extensions: 4075
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4072
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544913.2| PREDICTED: similar to pyridoxal (pyridoxine, vi... 469 e-132
>ref|XP_544913.2| PREDICTED: similar to pyridoxal (pyridoxine, vitamin B6) kinase
[Canis familiaris].
Length = 345
Score = 469 bits (1207), Expect = e-132
Identities = 228/255 (89%), Positives = 244/255 (95%)
Frame = +3
Query: 252 QVLGFEVDAVNSVQFSNHTGYAHWKGQVLNSDELHALYEGLKLNNVNKYDYVLTGYTRDK 431
+VLGFE+DA+NSVQFSNHTGYAHWKGQVLNSDELH LYEGLKLN+VNKYDYVLTGYTRDK
Sbjct: 62 EVLGFEIDALNSVQFSNHTGYAHWKGQVLNSDELHELYEGLKLNDVNKYDYVLTGYTRDK 121
Query: 432 SFLAMVVDIVRELKQQNPRLVYVCDPVMGDKWDGEGSMYVPEDLLPVYREKVVPVADIIT 611
SFLA VVDIVRELKQQN +LVYVCDPVMGDKW+GEGSMYVPEDLLPVY+EKVVPVADIIT
Sbjct: 122 SFLASVVDIVRELKQQNSKLVYVCDPVMGDKWNGEGSMYVPEDLLPVYKEKVVPVADIIT 181
Query: 612 PNQFEAELLTGRRIHSEEEALAVMDMLHAMGPDTVVITSSDLPSPRGKDYLIALGSQRTR 791
PNQFEAELL+GR+IHSEEEAL VMD+LHAMGPDTVVITSSDLPS RG DYLIALGSQRTR
Sbjct: 182 PNQFEAELLSGRKIHSEEEALVVMDVLHAMGPDTVVITSSDLPSSRGSDYLIALGSQRTR 241
Query: 792 SPDGSVATQRIRMEICKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLR 971
+PDGSV T+RIRME+ KVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVL+
Sbjct: 242 NPDGSVVTERIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQ 301
Query: 972 RTIQCAKTKAGKGLK 1016
RTI+CAK +A GLK
Sbjct: 302 RTIKCAKAQAAGGLK 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,942,037
Number of extensions: 1045673
Number of successful extensions: 4289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4282
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003672.1| pyridoxal kinase [Homo sapiens]. 516 e-146
>ref|NP_003672.1| pyridoxal kinase [Homo sapiens].
Length = 312
Score = 516 bits (1328), Expect = e-146
Identities = 247/283 (87%), Positives = 271/283 (95%)
Frame = +3
Query: 168 MEQECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNSD 347
ME+ECRVLSIQSHV+RGYVGNRAATFPLQVLGFE+DAVNSVQFSNHTGYAHWKGQVLNSD
Sbjct: 1 MEEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSD 60
Query: 348 ELHALYEGLKLNNVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDKW 527
EL LYEGL+LNN+NKYDYVLTGYTRDKSFLAMVVDIV+ELKQQNPRLVYVCDPV+GDKW
Sbjct: 61 ELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKW 120
Query: 528 DGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMGP 707
DGEGSMYVPEDLLPVY+EKVVP+ADIITPNQFEAELL+GR+IHS+EEAL VMDMLH+MGP
Sbjct: 121 DGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGP 180
Query: 708 DTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAAM 887
DTVVITSSDLPSP+G +YLI LGSQR R+P GSV +RIRM+I KVDAVFVGTGDLFAAM
Sbjct: 181 DTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAM 240
Query: 888 LLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAKTKAGKGLK 1016
LLAWTHKHPNNLKVACEKTVS +HHVL+RTIQCAK +AG+G++
Sbjct: 241 LLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVR 283
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,016,227
Number of extensions: 1002694
Number of successful extensions: 3916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3906
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_742146.1| pyridoxal kinase [Mus musculus]. 506 e-143
>ref|NP_742146.1| pyridoxal kinase [Mus musculus].
Length = 312
Score = 506 bits (1302), Expect = e-143
Identities = 248/283 (87%), Positives = 264/283 (93%)
Frame = +3
Query: 168 MEQECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNSD 347
ME ECRVLSIQSHVVRGYVGNRAA FPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVL S
Sbjct: 1 MEGECRVLSIQSHVVRGYVGNRAAMFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLKSQ 60
Query: 348 ELHALYEGLKLNNVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDKW 527
ELH LYEGLK+N+VNKYDYVLTGYTRDKSFLAMVVDIVRELKQQN RLVYVCDPVMGDKW
Sbjct: 61 ELHELYEGLKVNDVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNSRLVYVCDPVMGDKW 120
Query: 528 DGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMGP 707
+GEGSMYVP+DLLPVYR+KVVPVADIITPNQFEAELL+GR+IHS+EEA VMDMLH MGP
Sbjct: 121 NGEGSMYVPQDLLPVYRDKVVPVADIITPNQFEAELLSGRKIHSQEEAFEVMDMLHCMGP 180
Query: 708 DTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAAM 887
DTVVITSSDLPS +G DYLIALGSQR R PDGS TQRIRME+ KV+AVFVGTGDLFAAM
Sbjct: 181 DTVVITSSDLPSSQGSDYLIALGSQRMRKPDGSTVTQRIRMEMRKVEAVFVGTGDLFAAM 240
Query: 888 LLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAKTKAGKGLK 1016
LLAWTHKHP+NLKVACEKTVSAM HVL+RTI+CAK +AG+G K
Sbjct: 241 LLAWTHKHPDNLKVACEKTVSAMQHVLQRTIRCAKAEAGEGQK 283
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,247,183
Number of extensions: 841282
Number of successful extensions: 3294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3292
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999108.1| pyridoxal kinase [Sus scrofa]. 559 e-159
>ref|NP_999108.1| pyridoxal kinase [Sus scrofa].
Length = 322
Score = 559 bits (1440), Expect = e-159
Identities = 276/284 (97%), Positives = 280/284 (98%)
Frame = +3
Query: 165 GMEQECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNS 344
G + + RVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNS
Sbjct: 10 GGDSDSRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLNS 69
Query: 345 DELHALYEGLKLNNVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDK 524
DELHALYEGLKLNNVN+YDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDK
Sbjct: 70 DELHALYEGLKLNNVNQYDYVLTGYTRDKSFLAMVVDIVRELKQQNPRLVYVCDPVMGDK 129
Query: 525 WDGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMG 704
WDGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMG
Sbjct: 130 WDGEGSMYVPEDLLPVYREKVVPVADIITPNQFEAELLTGRRIHSEEEALAVMDMLHAMG 189
Query: 705 PDTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAA 884
PDTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAA
Sbjct: 190 PDTVVITSSDLPSPRGKDYLIALGSQRTRSPDGSVATQRIRMEICKVDAVFVGTGDLFAA 249
Query: 885 MLLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAKTKAGKGLK 1016
MLLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAK KAG+GLK
Sbjct: 250 MLLAWTHKHPNNLKVACEKTVSAMHHVLRRTIQCAKAKAGEGLK 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,630,847
Number of extensions: 852703
Number of successful extensions: 2711
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2708
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002554
(1018 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896280.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 218 5e-54
Sscrofa_Chr13 194 7e-47
>gb|GL896280.1| Sus scrofa unplaced genomic scaffold chrU_scaffold636
Length = 19201
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 307 caggctacgcgcactggaagggccaggtgctgaactcggacgagctgcacgcgctgtacg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14622 caggctacgcgcactggaagggccaggtgctgaactcggacgagctgcacgcgctgtacg 14563
Query: 367 aggggctgaagctgaacaacgtgaacaagtatgactacgtgctcacgggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14562 aggggctgaagctgaacaacgtgaacaagtatgactacgtgctcacgggt 14513
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 677 ggtgatggacatgctgcacgcaatgggcccggacacggtggtcatcacgagctcggacct 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8450 ggtgatggacatgctgcacgcaatgggcccggacacggtggtcatcacgagctcggacct 8391
Query: 737 cccgtccccgaggggcaaagactacctgatcgcgct 772
||||||||||||||||||||||||||||||||||||
Sbjct: 8390 cccgtccccgaggggcaaagactacctgatcgcgct 8355
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 545 gtacgtccccgaggacctccttccagtttacagagagaaggtcgtgcccgtggcagacat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409 gtacgtccccgaggacctccttccagtttacagagagaaggtcgtgcccgtggcagacat 12350
Query: 605 cataacccccaaccagtttgaggcggagt 633
|||||||||||||||||||||||||||||
Sbjct: 12349 cataacccccaaccagtttgaggcggagt 12321
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 414 ggttacacgagagacaagtccttcctggccatggtggtggacatcgtgcgggagctgaag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13951 ggttacacgagagacaagtccttcctggccatggtggtggacatcgtgcgggagctgaag 13892
Query: 474 cagcagaacccgaggctggtgtacg 498
|||||||||||||||||||||||||
Sbjct: 13891 cagcagaacccgaggctggtgtacg 13867
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 798 gacggctccgtggcgacgcagcgtatccgcatggagatatgcaaggtggacgcggtcttc 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7757 gacggctccgtggcgacgcagcgtatccgcatggagatatgcaaggtggacgcggtcttc 7698
Query: 858 gtgggcactggggacctctttgcc 881
||||||||||||||||||||||||
Sbjct: 7697 gtgggcactggggacctctttgcc 7674
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 251 gcaggttctggggttcgaggtcgatgcagtgaattctgtccagttttcaaaccacacagg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16250 gcaggttctggggttcgaggtcgatgcagtgaattctgtccagttttcaaaccacacagg 16191
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 632 gttgctgaccggcaggaggatccacagtgaggaagaagccttggcggt 679
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11275 gttgctgaccggcaggaggatccacagtgaggaagaagccttggcggt 11228
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 498 gtgtgcgacccggtgatgggagacaagtgggatggagaaggctccatg 545
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13431 gtgtgcgacccggtgatgggagacaagtgggatggagaaggctccatg 13384
Score = 75.8 bits (38), Expect = 4e-11
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 887 gctgctggcgtggacacacaagcaccccaacaacctcaaggt 928
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7573 gctgctggcgtgcacacacaagcaccccaacaacctcaaggt 7532
>Sscrofa_Chr13
|| Length = 218635234
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 159 aggccaggcatggagcaggagtgccgggtgctctccatccagagccacgtcgtccgcggc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216735900 aggccaggcatggagcaggagtgccgggtgctctccatccagagccacgtcgtccgcggc 216735841
Query: 219 tacgtgggcaaccgagcggcaacgttcccgctgcaggt 256
||||||||||||||||||||||||||||||||||||||
Sbjct: 216735840 tacgtgggcaaccgagcggcaacgttcccgctgcaggt 216735803
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,493,481
Number of extensions: 100
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 1018
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 997
Effective length of database: 2,808,413,156
Effective search space: 2799987916532
Effective search space used: 2799987916532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)