Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095744.1| BRCA1-A complex subunit BRE [Bos taurus]. 763 0.0
>ref|NP_001095744.1| BRCA1-A complex subunit BRE [Bos taurus].
Length = 383
Score = 763 bits (1971), Expect = 0.0
Identities = 368/375 (98%), Positives = 371/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,700,896
Number of extensions: 1527042
Number of successful extensions: 4417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4415
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,207,134
Effective search space: 4574697148
Effective search space used: 4574697148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532918.2| PREDICTED: similar to brain and reproductive or... 762 0.0
Alignment gi|XP_850681.1| PREDICTED: similar to brain and reproductive or... 762 0.0
Alignment gi|XP_862092.1| PREDICTED: similar to brain and reproductive or... 346 2e-95
>ref|XP_532918.2| PREDICTED: similar to brain and reproductive organ-expressed protein
isoform 1 [Canis familiaris].
Length = 383
Score = 762 bits (1968), Expect = 0.0
Identities = 367/375 (97%), Positives = 371/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQ+QCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQYQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
>ref|XP_850681.1| PREDICTED: similar to brain and reproductive organ-expressed protein
isoform 2 [Canis familiaris].
Length = 383
Score = 762 bits (1968), Expect = 0.0
Identities = 367/375 (97%), Positives = 371/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQ+QCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQYQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
>ref|XP_862092.1| PREDICTED: similar to brain and reproductive organ-expressed
protein isoform 3 [Canis familiaris].
Length = 179
Score = 346 bits (888), Expect = 2e-95
Identities = 165/169 (97%), Positives = 166/169 (98%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEF 638
VQQYHQ+QCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNW F
Sbjct: 121 VQQYHQYQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWVRFF 169
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,981,233
Number of extensions: 1572810
Number of successful extensions: 4495
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4492
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 321
Effective length of database: 15,340,888
Effective search space: 4924425048
Effective search space used: 4924425048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_954664.1| BRCA1-A complex subunit BRE isoform 2 [Homo sap... 760 0.0
Alignment gi|NP_954661.1| BRCA1-A complex subunit BRE isoform 2 [Homo sap... 760 0.0
Alignment gi|NP_954663.1| BRCA1-A complex subunit BRE isoform 3 [Homo sap... 746 0.0
Alignment gi|NP_954662.1| BRCA1-A complex subunit BRE isoform 3 [Homo sap... 746 0.0
Alignment gi|NP_004890.2| BRCA1-A complex subunit BRE isoform 1 [Homo sap... 746 0.0
>ref|NP_954664.1| BRCA1-A complex subunit BRE isoform 2 [Homo sapiens].
Length = 383
Score = 760 bits (1963), Expect = 0.0
Identities = 367/375 (97%), Positives = 370/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSAL NLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
>ref|NP_954661.1| BRCA1-A complex subunit BRE isoform 2 [Homo sapiens].
Length = 383
Score = 760 bits (1963), Expect = 0.0
Identities = 367/375 (97%), Positives = 370/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSAL NLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
>ref|NP_954663.1| BRCA1-A complex subunit BRE isoform 3 [Homo sapiens].
Length = 376
Score = 746 bits (1926), Expect = 0.0
Identities = 358/363 (98%), Positives = 360/363 (99%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSAL NLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR 1220
+
Sbjct: 361 RAK 363
>ref|NP_954662.1| BRCA1-A complex subunit BRE isoform 3 [Homo sapiens].
Length = 376
Score = 746 bits (1926), Expect = 0.0
Identities = 358/363 (98%), Positives = 360/363 (99%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSAL NLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR 1220
+
Sbjct: 361 RAK 363
>ref|NP_004890.2| BRCA1-A complex subunit BRE isoform 1 [Homo sapiens].
Length = 415
Score = 746 bits (1926), Expect = 0.0
Identities = 358/363 (98%), Positives = 360/363 (99%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSAL NLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR 1220
+
Sbjct: 361 RAK 363
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,085,617
Number of extensions: 1561003
Number of successful extensions: 4427
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4425
Number of HSP's successfully gapped: 5
Length of query: 427
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,835,944
Effective search space: 4777173968
Effective search space used: 4777173968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653124.1| BRCA1-A complex subunit BRE isoform V [Mus musc... 761 0.0
Alignment gi|NP_851796.1| BRCA1-A complex subunit BRE isoform I [Mus musc... 709 0.0
Alignment gi|NP_851797.1| BRCA1-A complex subunit BRE isoform IV [Mus mus... 679 0.0
Alignment gi|NP_851798.1| BRCA1-A complex subunit BRE isoform III [Mus mu... 620 e-178
Alignment gi|NP_851799.1| BRCA1-A complex subunit BRE isoform II [Mus mus... 479 e-135
>ref|NP_653124.1| BRCA1-A complex subunit BRE isoform V [Mus musculus].
Length = 383
Score = 761 bits (1966), Expect = 0.0
Identities = 366/375 (97%), Positives = 370/375 (98%), Gaps = 1/375 (0%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 311
MSPE+ALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEIALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 312 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 491
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKEL 120
Query: 492 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 671
VQQYHQFQC RLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCGRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 672 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 851
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 852 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 1031
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 1032 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAK 1211
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 1212 EQR-LFQTFVPQFQE 1253
+ F+TFVPQFQE
Sbjct: 361 RAKAYFKTFVPQFQE 375
>ref|NP_851796.1| BRCA1-A complex subunit BRE isoform I [Mus musculus].
Length = 420
Score = 709 bits (1831), Expect = 0.0
Identities = 353/412 (85%), Positives = 361/412 (87%), Gaps = 38/412 (9%)
Frame = +3
Query: 132 MSPEVALNRISPMLSPFISSVVRNGKVG-------LDATNC------------LRITDLK 254
MSPE+ALNRISPMLSPFISSVVRNGK+ L +C + DL+
Sbjct: 1 MSPEIALNRISPMLSPFISSVVRNGKIHEKGPSQKLSFKSCSYHLPMCACNEWYGVPDLE 60
Query: 255 SG------------------CTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPD 380
CTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPD
Sbjct: 61 KASYLWRKKENHLPLEKGQNCTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPD 120
Query: 381 FIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQ 560
FIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQC RLRESSRLMFEYQ
Sbjct: 121 FIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRESSRLMFEYQ 180
Query: 561 TLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALL 740
TLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALL
Sbjct: 181 TLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALL 240
Query: 741 SVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQY 920
SVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQY
Sbjct: 241 SVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQY 300
Query: 921 VIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQP 1100
VIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQP
Sbjct: 301 VIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQP 360
Query: 1101 TLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAKEQR-LFQTFVPQFQE 1253
TLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK + F+TFVPQFQE
Sbjct: 361 TLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKAYFKTFVPQFQE 412
>ref|NP_851797.1| BRCA1-A complex subunit BRE isoform IV [Mus musculus].
Length = 374
Score = 679 bits (1753), Expect = 0.0
Identities = 324/332 (97%), Positives = 327/332 (98%), Gaps = 1/332 (0%)
Frame = +3
Query: 261 CTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLA 440
CTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLA
Sbjct: 35 CTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLA 94
Query: 441 SWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKN 620
SWNPSNPECLLLVVKELVQQYHQFQC RLRESSRLMFEYQTLLEEPQYGENMEIYAGKKN
Sbjct: 95 SWNPSNPECLLLVVKELVQQYHQFQCGRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKN 154
Query: 621 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSP 800
NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSP
Sbjct: 155 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSP 214
Query: 801 RIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG 980
RIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG
Sbjct: 215 RIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG 274
Query: 981 TGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQA 1160
TGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQA
Sbjct: 275 TGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQA 334
Query: 1161 QENYPYSPRWDGNEMAKEQR-LFQTFVPQFQE 1253
Q+NYPYSPRWDGNEMAK + F+TFVPQFQE
Sbjct: 335 QKNYPYSPRWDGNEMAKRAKAYFKTFVPQFQE 366
>ref|NP_851798.1| BRCA1-A complex subunit BRE isoform III [Mus musculus].
Length = 319
Score = 620 bits (1599), Expect = e-178
Identities = 298/306 (97%), Positives = 301/306 (98%), Gaps = 1/306 (0%)
Frame = +3
Query: 339 DIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQC 518
DIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQC
Sbjct: 6 DIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQC 65
Query: 519 SRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLL 698
RLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLL
Sbjct: 66 GRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLL 125
Query: 699 KDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDY 878
KDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDY
Sbjct: 126 KDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDY 185
Query: 879 VPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFL 1058
VPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFL
Sbjct: 186 VPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFL 245
Query: 1059 VHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAKEQR-LFQTF 1235
VHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK + F+TF
Sbjct: 246 VHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKAYFKTF 305
Query: 1236 VPQFQE 1253
VPQFQE
Sbjct: 306 VPQFQE 311
>ref|NP_851799.1| BRCA1-A complex subunit BRE isoform II [Mus musculus].
Length = 245
Score = 479 bits (1232), Expect = e-135
Identities = 230/237 (97%), Positives = 233/237 (98%), Gaps = 1/237 (0%)
Frame = +3
Query: 546 MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGE 725
MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGE
Sbjct: 1 MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGE 60
Query: 726 DVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLT 905
DVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLT
Sbjct: 61 DVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLT 120
Query: 906 NKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFF 1085
NKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFF
Sbjct: 121 NKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFF 180
Query: 1086 PRDQPTLTFQSVYHFTNSGQLYSQAQENYPYSPRWDGNEMAKEQR-LFQTFVPQFQE 1253
PRDQPTLTFQSVYHFTNSGQLYSQAQ+NYPYSPRWDGNEMAK + F+TFVPQFQE
Sbjct: 181 PRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKAYFKTFVPQFQE 237
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,925,237
Number of extensions: 1321667
Number of successful extensions: 3919
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3909
Number of HSP's successfully gapped: 6
Length of query: 427
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 323
Effective length of database: 12,493,815
Effective search space: 4035502245
Effective search space used: 4035502245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125328.2| PREDICTED: BRCA1-A complex subunit BRE-like ... 298 4e-81
Alignment gi|XP_003354932.1| PREDICTED: BRCA1-A complex subunit BRE-like ... 111 8e-25
>ref|XP_003125328.2| PREDICTED: BRCA1-A complex subunit BRE-like [Sus scrofa].
Length = 180
Score = 298 bits (763), Expect = 4e-81
Identities = 141/148 (95%), Positives = 144/148 (97%), Gaps = 1/148 (0%)
Frame = +3
Query: 813 ALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVV 992
ALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVV
Sbjct: 25 ALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVV 84
Query: 993 EYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQENY 1172
EYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ+NY
Sbjct: 85 EYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNY 144
Query: 1173 PYSPRWDGNEMAKEQR-LFQTFVPQFQE 1253
PYSPRWDGNEMAK + F+TFVPQFQE
Sbjct: 145 PYSPRWDGNEMAKRAKAYFKTFVPQFQE 172
>ref|XP_003354932.1| PREDICTED: BRCA1-A complex subunit BRE-like [Sus scrofa].
Length = 63
Score = 111 bits (278), Expect = 8e-25
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +3
Query: 546 MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLK 701
MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLK
Sbjct: 1 MFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLK 52
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,544,100
Number of extensions: 977610
Number of successful extensions: 3024
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3023
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 325
Effective length of database: 8,804,438
Effective search space: 2861442350
Effective search space used: 2861442350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002563
(1282 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 387 e-104
>Sscrofa_Chr03
|| Length = 144787322
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 432 aaccttgcctcctggaatccatcaaatcctgaatgtctcttacttgtggtgaaggaactt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118060942 aaccttgcctcctggaatccatcaaatcctgaatgtctcttacttgtggtgaaggaactt 118060883
Query: 492 gtgcaacagtatcaccaatttcaatgcagccgtctccgtgagagctcccgcctcatgttt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118060882 gtgcaacagtatcaccaatttcaatgcagccgtctccgtgagagctcccgcctcatgttt 118060823
Query: 552 gaataccagacattactggaagagccgcagtatggagagaacatggaaatttatgctggg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118060822 gaataccagacattactggaagagccgcagtatggagagaacatggaaatttatgctggg 118060763
Query: 612 aaaaagaacaactgg 626
|||||||||||||||
Sbjct: 118060762 aaaaagaacaactgg 118060748
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 110 cagtggtgatttgcaagtcagaatgtccccagaagtggccttgaaccgaatttctccaat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118308406 cagtggtgatttgcaagtcagaatgtccccagaagtggccttgaaccgaatttctccaat 118308465
Query: 170 gctctccccgttcatatctagcgtggtccgtaatggaaaagtgggactagatgctaccaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118308466 gctctccccgttcatatctagcgtggtccgtaatggaaaagtgggactagatgctaccaa 118308525
Query: 230 ctgtttgaggataacggacttgaagtctgg 259
||||||||||||||||||||||||||||||
Sbjct: 118308526 ctgtttgaggataacggacttgaagtctgg 118308555
Score = 276 bits (139), Expect = 3e-71
Identities = 152/155 (98%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 1066 ttgacctgcccctgtttttccctcgagaccagccaactctcacattccagtccgtctatc 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117737155 ttgacctgcccctgtttttccctcgagaccagccaactctcacattccagtccgtctatc 117737096
Query: 1126 acttcaccaacagtggacagctttattcccaggcccaagaaaattatccatacagcccca 1185
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 117737095 acttcaccaacagtggacagctttattcccaggcccagaaaaattatccatacagcccca 117737036
Query: 1186 gatgggatggaaatgaaatggcc-aaagagcaaag 1219
||||||||||||||||||||||| |||||||||||
Sbjct: 117737035 gatgggatggaaatgaaatggccaaaagagcaaag 117737001
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 699 aaggatgtgaatgaagacccgggagaagatgtggccctcctttctgtcagcttcgaggac 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118160658 aaggatgtgaatgaagacccgggagaagatgtggccctcctttctgtcagcttcgaggac 118160599
Query: 759 actgaagccactcaggtgtaccccaagttgtacttgtcaccccgaattgaaca 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118160598 actgaagccactcaggtgtaccccaagttgtacttgtcaccccgaattgaaca 118160546
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 812 tgcacttggaggctcctcagctcttcacatcccagcttttccaggaggaggatgtctcat 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117786132 tgcacttggaggctcctcagctcttcacatcccagcttttccaggaggaggatgtctcat 117786191
Query: 872 tgattatgttcctcaagtgtgccacctgctcaccaacaaggt 913
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117786192 tgattatgttcctcaagtgtgccacctgctcaccaacaaggt 117786233
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 812 tgcacttggaggctcctcagctcttcacatcccagcttttccaggaggaggatgtctcat 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117902722 tgcacttggaggctcctcagctcttcacatcccagcttttccaggaggaggatgtctcat 117902781
Query: 872 tgattatgttcctcaagtgtgccacctgctcaccaacaaggt 913
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117902782 tgattatgttcctcaagtgtgccacctgctcaccaacaaggt 117902823
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 337 gggatatcattttcaatgcccaatatccagagctgcctcccgattttatcttcggagaag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118103463 gggatatcattttcaatgcccaatatccagagctgcctcccgattttatcttcggagaag 118103404
Query: 397 atgctgagttcctgccagacccctcggctctgcat 431
|||||||||||||||||||||||||||||||||||
Sbjct: 118103403 atgctgagttcctgccagacccctcggctctgcat 118103369
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 983 gggtgtcgtggaatacgatgcagaaggctttacaaaactcactctgttgctgatgtggaa 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117792594 gggtgtcgtggaatacgatgcagaaggctttacaaaactcactctgttgctgatgtggaa 117792653
Query: 1043 agatttttgttttcttgtacaca 1065
|||||||||||||||||||||||
Sbjct: 117792654 agatttttgttttcttgtacaca 117792676
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 983 gggtgtcgtggaatacgatgcagaaggctttacaaaactcactctgttgctgatgtggaa 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117909184 gggtgtcgtggaatacgatgcagaaggctttacaaaactcactctgttgctgatgtggaa 117909243
Query: 1043 agatttttgttttcttgtacaca 1065
|||||||||||||||||||||||
Sbjct: 117909244 agatttttgttttcttgtacaca 117909266
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 259 gctgcacgtccttgactcctggacccaactgtgaccgatttaaattgcacataccatacg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118371608 gctgcacgtccttgactcctggacccaactgtgaccgatttaaattgcacataccatacg 118371549
Query: 319 ctggagagaccttaaaatg 337
|||||||||||||||||||
Sbjct: 118371548 ctggagagaccttaaaatg 118371530
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 626 gacgggtgaattttcagctcgtttccttttgaagctgccagtggatttcagcaatattcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118042502 gacgggtgaattttcagctcgtttccttttgaagctgccagtggatttcagcaatattcc 118042443
Query: 686 cacatacctgctcaagg 702
|||||||||||||||||
Sbjct: 118042442 cacatacctgctcaagg 118042426
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 910 aggtgcagtatgtgattcaaggctatcacaaaagacgagagtacattgccgctttcctca 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117789374 aggtgcagtatgtgattcaaggctatcacaaaagacgagagtacattgccgctttcctca 117789433
Query: 970 gtcactttggcacg 983
||||||||||||||
Sbjct: 117789434 gtcactttggcacg 117789447
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 910 aggtgcagtatgtgattcaaggctatcacaaaagacgagagtacattgccgctttcctca 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117905964 aggtgcagtatgtgattcaaggctatcacaaaagacgagagtacattgccgctttcctca 117906023
Query: 970 gtcactttggcacg 983
||||||||||||||
Sbjct: 117906024 gtcactttggcacg 117906037
Score = 65.9 bits (33), Expect = 5e-08
Identities = 50/53 (94%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 1228 aaacctttgtccctcagttccagga-gcagcgtttgcc-atgggaagctctag 1278
||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 117700518 aaacctttgtccctcagttccaggaggcagcgtttgccaatggaaagctctag 117700466
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,894,044
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 14
Length of query: 1282
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1261
Effective length of database: 2,808,413,156
Effective search space: 3541408989716
Effective search space used: 3541408989716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)