Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106792.1| acyl-CoA-binding protein [Bos taurus]. 167 1e-41
Alignment gi|NP_001106768.1| acyl-CoA-binding domain-containing protein 7... 113 1e-25
Alignment gi|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus]. 98 6e-21
Alignment gi|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bo... 91 1e-18
Alignment gi|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [B... 76 3e-14
Alignment gi|NP_001077252.1| acyl-CoA-binding domain-containing protein 6... 74 1e-13
Alignment gi|NP_001039679.1| acyl-CoA-binding domain-containing protein 4... 72 6e-13
Alignment gi|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [B... 66 3e-11
>ref|NP_001106792.1| acyl-CoA-binding protein [Bos taurus].
Length = 87
Score = 167 bits (422), Expect = 1e-41
Identities = 80/87 (91%), Positives = 85/87 (97%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQAEF+KAAEEVK+LKTKPAD+EMLFIYSHYKQATVGDINTERPG+LD KGKAKWDAWN
Sbjct: 1 MSQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKKYGI 403
LKGTSKEDAMKAYI+KVEELKKKYGI
Sbjct: 61 ELKGTSKEDAMKAYIDKVEELKKKYGI 87
>ref|NP_001106768.1| acyl-CoA-binding domain-containing protein 7 [Bos taurus].
Length = 88
Score = 113 bits (283), Expect = 1e-25
Identities = 52/85 (61%), Positives = 69/85 (81%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
QA+F+KAA++V+ LKT+P D+E+ +Y YKQ+ +GDI+ E P +LDLKGKAKW+AWN
Sbjct: 4 QADFDKAAKDVRKLKTRPDDEELKELYGLYKQSVIGDIDIECPALLDLKGKAKWEAWNLQ 63
Query: 329 KGTSKEDAMKAYINKVEELKKKYGI 403
KG SKEDAM AYI+K +EL +KYGI
Sbjct: 64 KGLSKEDAMNAYISKAKELIEKYGI 88
>ref|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus].
Length = 87
Score = 98.2 bits (243), Expect = 6e-21
Identities = 49/83 (59%), Positives = 55/83 (66%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
M Q EFE A +K LK +D E L +YS+YKQAT GD N P DLK KAKW+AWN
Sbjct: 1 MCQVEFEMACAAIKQLKGPVSDQEKLLVYSYYKQATQGDCNIPAPPATDLKAKAKWEAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKK 391
KG SK DAM+ YI KVEELKK
Sbjct: 61 ENKGMSKMDAMRIYIAKVEELKK 83
>ref|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bos taurus].
Length = 84
Score = 90.9 bits (224), Expect = 1e-18
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
Q FE A KNL +P + +L IY+ YKQAT GD+ ERPG D G+AKWDAWNGL
Sbjct: 5 QTRFETAVANSKNLSERPDNPTLLKIYAFYKQATTGDVEGERPGFSDFVGRAKWDAWNGL 64
Query: 329 KGTSKEDAMKAYINKVEEL 385
KG + ++AM+ YI+ +E L
Sbjct: 65 KGKTADEAMQLYIDLIESL 83
>ref|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [Bos taurus].
Length = 393
Score = 76.3 bits (186), Expect = 3e-14
Identities = 37/80 (46%), Positives = 48/80 (60%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +F A +VK LK P ++ L +Y+ YKQAT G N +PG+LD K KWDAWN
Sbjct: 38 SQKDFNNAVSQVKLLKEDPGNEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDAWNA 97
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L SKE A + Y++ V L
Sbjct: 98 LGSLSKEAARQNYVDLVSRL 117
>ref|NP_001077252.1| acyl-CoA-binding domain-containing protein 6 [Bos taurus].
Length = 282
Score = 73.9 bits (180), Expect = 1e-13
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Frame = +2
Query: 158 FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLKGT 337
FEKAAE ++ L + +++L++Y+ YKQ VG+ NT +P D +GK KW+AW L +
Sbjct: 46 FEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDS 105
Query: 338 SKEDAMKAYINKVEEL---------KKKYGI*GTGFACQLCSS-----------PDIMP- 454
S AM+ YI V++L +KK TGF + SS DI
Sbjct: 106 SPSQAMQEYIAVVKKLDPSWNPQSPEKKGKEANTGFGGPVVSSLYHEEIIREEDKDIFDY 165
Query: 455 CFSNTVDEVNK 487
C N +D + K
Sbjct: 166 CRENNIDHITK 176
>ref|NP_001039679.1| acyl-CoA-binding domain-containing protein 4 [Bos taurus].
Length = 303
Score = 71.6 bits (174), Expect = 6e-13
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
SP Q +F+ A ++NL +P+ +EML YS+YKQAT+G +PG D G
Sbjct: 7 SPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLIPQPGFWDPIG 66
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
+ KW+AWN L S+E+AM AYI +++ + +K
Sbjct: 67 RYKWEAWNSLGQMSREEAMSAYITEMKLVAQK 98
>ref|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [Bos taurus].
Length = 533
Score = 66.2 bits (160), Expect = 3e-11
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 149 QAEFEKAAEEV----KNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
+ FE A + + KN +P ++ ML YS YKQAT G +PG D G+ KWDA
Sbjct: 43 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSKPGFWDPVGRYKWDA 102
Query: 317 WNGLKGTSKEDAMKAYINKVEELKK 391
W+ L +KE+AM AY VEE+KK
Sbjct: 103 WSSLGDMTKEEAMIAY---VEEMKK 124
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,757,894
Number of extensions: 557408
Number of successful extensions: 1555
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 8
Length of query: 246
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 146
Effective length of database: 14,372,574
Effective search space: 2098395804
Effective search space used: 2098395804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183976.1| acyl-CoA-binding protein [Canis lupus famili... 167 9e-42
Alignment gi|XP_850165.1| PREDICTED: similar to diazepam binding inhibito... 162 4e-40
Alignment gi|XP_848899.1| PREDICTED: similar to Acyl-CoA-binding protein ... 113 2e-25
Alignment gi|XP_537760.2| PREDICTED: similar to endozepine-like peptide [... 98 9e-21
Alignment gi|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-C... 83 3e-16
Alignment gi|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding d... 75 8e-14
Alignment gi|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding d... 75 8e-14
Alignment gi|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding d... 70 2e-12
Alignment gi|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding d... 67 2e-11
Alignment gi|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding d... 67 2e-11
>ref|NP_001183976.1| acyl-CoA-binding protein [Canis lupus familiaris].
Length = 87
Score = 167 bits (423), Expect = 9e-42
Identities = 78/87 (89%), Positives = 86/87 (98%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQAEF+KAAE+VK+LKTKPADDEML+IYSHYKQATVGDINTERPG+LDL+GKAKWDAWN
Sbjct: 1 MSQAEFDKAAEDVKHLKTKPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKKYGI 403
LKGTSKEDAMKAY+NKVE+LKKKYGI
Sbjct: 61 QLKGTSKEDAMKAYVNKVEDLKKKYGI 87
>ref|XP_850165.1| PREDICTED: similar to diazepam binding inhibitor [Canis
familiaris].
Length = 127
Score = 162 bits (409), Expect = 4e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Frame = +2
Query: 125 PCSPAGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKA 304
P +PA MSQAEF+KA E+VK+L+TKPADDEMLFIYSHYKQAT+GD+NTE PG+LDL+GKA
Sbjct: 35 PHNPASMSQAEFDKATEDVKHLETKPADDEMLFIYSHYKQATIGDVNTEWPGLLDLRGKA 94
Query: 305 KWDAWNGLKGTSKEDAMKAYINKVEELKKKYGI 403
KWDAWN LK TSKE+AMKAYINKVE+LKKKYG+
Sbjct: 95 KWDAWNHLKRTSKENAMKAYINKVEDLKKKYGM 127
>ref|XP_848899.1| PREDICTED: similar to Acyl-CoA-binding protein (ACBP) (Diazepam
binding inhibitor) (DBI) (Endozepine) (EP) [Canis
familiaris].
Length = 298
Score = 113 bits (283), Expect = 2e-25
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
QA+F K AE+V+ LK +P D+E+ +Y YKQ+ VGDIN E PG+LDLKGKAKW+AWN
Sbjct: 214 QADFNKIAEDVRKLKARPDDEELKELYGLYKQSVVGDINIECPGMLDLKGKAKWEAWNLQ 273
Query: 329 KGTSKEDAMKAYINKVEELKKKYGI 403
KG SKEDAM AYI K +EL +KYGI
Sbjct: 274 KGLSKEDAMSAYIPKAKELIEKYGI 298
>ref|XP_537760.2| PREDICTED: similar to endozepine-like peptide [Canis familiaris].
Length = 207
Score = 97.8 bits (242), Expect = 9e-21
Identities = 50/92 (54%), Positives = 57/92 (61%)
Frame = +2
Query: 119 WNPCSPAGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
W P M Q EFE A +K LK +D E L +YS YKQAT GD N P D+K
Sbjct: 115 WASAPP--MCQVEFEMACAAIKQLKGPVSDQEKLLVYSFYKQATQGDCNIPAPPATDVKA 172
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
KAKW+AWN KG SK DAM+ Y+ KVEELKKK
Sbjct: 173 KAKWEAWNQNKGMSKMDAMRIYVAKVEELKKK 204
>ref|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform
1 [Canis familiaris].
Length = 659
Score = 82.8 bits (203), Expect = 3e-16
Identities = 40/82 (48%), Positives = 51/82 (62%)
Frame = +2
Query: 140 GMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAW 319
G SQ +FE A +VK LK P ++ L +Y+ YKQ T G NT RPG+ DL KAKWDAW
Sbjct: 303 GASQKDFESAMNQVKLLKKDPGNEVKLKLYALYKQTTEGPCNTPRPGVFDLINKAKWDAW 362
Query: 320 NGLKGTSKEDAMKAYINKVEEL 385
N L KE A + Y++ V +L
Sbjct: 363 NALGNLPKETARQNYVDLVSDL 384
>ref|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
isoform 2 [Canis familiaris].
Length = 269
Score = 74.7 bits (182), Expect = 8e-14
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
SP Q +F+ A ++NL +P+ +EML YS+YKQAT+G RPG D G
Sbjct: 7 SPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG 66
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 67 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98
>ref|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
isoform 1 [Canis familiaris].
Length = 300
Score = 74.7 bits (182), Expect = 8e-14
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
SP Q +F+ A ++NL +P+ +EML YS+YKQAT+G RPG D G
Sbjct: 7 SPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG 66
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 67 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98
>ref|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 6
[Canis familiaris].
Length = 282
Score = 70.5 bits (171), Expect = 2e-12
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +2
Query: 122 NPCSPAGMSQAE-FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
+P + A S AE FE+AA ++ L + +++L++Y+ YKQ VG+ NT +P D +G
Sbjct: 33 SPETEASGSLAELFEQAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEG 92
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEEL 385
K KW+AW L +S AM+ YI V++L
Sbjct: 93 KQKWEAWKALGDSSPSQAMQEYIAVVKKL 121
>ref|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 1 [Canis familiaris].
Length = 515
Score = 66.6 bits (161), Expect = 2e-11
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 149 QAEFEKAAEEV----KNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
+ FE A + + KN +P ++ ML YS YKQAT G RPG D G+ KWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 104
Query: 317 WNGLKGTSKEDAMKAYINKVEELKK 391
W+ L +KE+AM AY VEE+KK
Sbjct: 105 WSSLGDMTKEEAMIAY---VEEMKK 126
>ref|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 4 [Canis familiaris].
Length = 517
Score = 66.6 bits (161), Expect = 2e-11
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 149 QAEFEKAAEEV----KNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
+ FE A + + KN +P ++ ML YS YKQAT G RPG D G+ KWDA
Sbjct: 47 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 106
Query: 317 WNGLKGTSKEDAMKAYINKVEELKK 391
W+ L +KE+AM AY VEE+KK
Sbjct: 107 WSSLGDMTKEEAMIAY---VEEMKK 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,371,050
Number of extensions: 515123
Number of successful extensions: 1506
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 11
Length of query: 246
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 146
Effective length of database: 15,540,904
Effective search space: 2268971984
Effective search space used: 2268971984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073331.1| acyl-CoA-binding protein isoform 3 [Homo sap... 164 1e-40
Alignment gi|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapien... 160 8e-40
Alignment gi|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sap... 160 8e-40
Alignment gi|NP_001171512.1| acyl-CoA-binding protein isoform 5 [Homo sap... 160 1e-39
Alignment gi|NP_001171488.1| acyl-CoA-binding protein isoform 4 [Homo sap... 160 1e-39
Alignment gi|NP_001171514.1| acyl-CoA-binding protein isoform 6 [Homo sap... 159 2e-39
Alignment gi|NP_001073332.1| acyl-CoA-binding protein isoform 2 [Homo sap... 158 4e-39
Alignment gi|NP_001034933.1| acyl-CoA-binding domain-containing protein 7... 108 4e-24
Alignment gi|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 77 2e-14
Alignment gi|NP_001159482.1| enoyl-CoA delta isomerase 2, mitochondrial i... 77 2e-14
>ref|NP_001073331.1| acyl-CoA-binding protein isoform 3 [Homo sapiens].
Length = 87
Score = 164 bits (414), Expect = 1e-40
Identities = 78/87 (89%), Positives = 83/87 (95%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQAEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKWDAWN
Sbjct: 1 MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKKYGI 403
LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 61 ELKGTSKEDAMKAYINKVEELKKKYGI 87
>ref|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
Length = 104
Score = 160 bits (406), Expect = 8e-40
Identities = 76/91 (83%), Positives = 84/91 (92%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKW 310
+P ++AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKW
Sbjct: 14 NPGTGTEAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 73
Query: 311 DAWNGLKGTSKEDAMKAYINKVEELKKKYGI 403
DAWN LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 74 DAWNELKGTSKEDAMKAYINKVEELKKKYGI 104
>ref|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
Length = 104
Score = 160 bits (406), Expect = 8e-40
Identities = 76/91 (83%), Positives = 84/91 (92%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKW 310
+P ++AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKW
Sbjct: 14 NPGTGTEAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 73
Query: 311 DAWNGLKGTSKEDAMKAYINKVEELKKKYGI 403
DAWN LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 74 DAWNELKGTSKEDAMKAYINKVEELKKKYGI 104
>ref|NP_001171512.1| acyl-CoA-binding protein isoform 5 [Homo sapiens].
Length = 129
Score = 160 bits (405), Expect = 1e-39
Identities = 76/89 (85%), Positives = 82/89 (92%)
Frame = +2
Query: 137 AGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
A +AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKWDA
Sbjct: 41 AARGEAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA 100
Query: 317 WNGLKGTSKEDAMKAYINKVEELKKKYGI 403
WN LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 101 WNELKGTSKEDAMKAYINKVEELKKKYGI 129
>ref|NP_001171488.1| acyl-CoA-binding protein isoform 4 [Homo sapiens].
Length = 148
Score = 160 bits (405), Expect = 1e-39
Identities = 76/89 (85%), Positives = 82/89 (92%)
Frame = +2
Query: 137 AGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
A +AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKWDA
Sbjct: 60 AARGEAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA 119
Query: 317 WNGLKGTSKEDAMKAYINKVEELKKKYGI 403
WN LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 120 WNELKGTSKEDAMKAYINKVEELKKKYGI 148
>ref|NP_001171514.1| acyl-CoA-binding protein isoform 6 [Homo sapiens].
Length = 97
Score = 159 bits (402), Expect = 2e-39
Identities = 75/86 (87%), Positives = 82/86 (95%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
++AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKWDAWN
Sbjct: 12 AKAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 71
Query: 326 LKGTSKEDAMKAYINKVEELKKKYGI 403
LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 72 LKGTSKEDAMKAYINKVEELKKKYGI 97
>ref|NP_001073332.1| acyl-CoA-binding protein isoform 2 [Homo sapiens].
Length = 88
Score = 158 bits (400), Expect = 4e-39
Identities = 75/84 (89%), Positives = 80/84 (95%)
Frame = +2
Query: 152 AEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLK 331
AEFEKAAEEV++LKTKP+D+EMLFIY HYKQATVGDINTERPG+LD GKAKWDAWN LK
Sbjct: 5 AEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELK 64
Query: 332 GTSKEDAMKAYINKVEELKKKYGI 403
GTSKEDAMKAYINKVEELKKKYGI
Sbjct: 65 GTSKEDAMKAYINKVEELKKKYGI 88
>ref|NP_001034933.1| acyl-CoA-binding domain-containing protein 7 [Homo sapiens].
Length = 88
Score = 108 bits (271), Expect = 4e-24
Identities = 52/85 (61%), Positives = 65/85 (76%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
QA+F++AAE+V+ LK +P D E+ +Y YKQA VGDIN PG+LDLKGKAKW+AWN
Sbjct: 4 QADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLK 63
Query: 329 KGTSKEDAMKAYINKVEELKKKYGI 403
KG S EDA AYI+K +EL +KYGI
Sbjct: 64 KGLSTEDATSAYISKAKELIEKYGI 88
>ref|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo
sapiens].
Length = 364
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/80 (46%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +FE + +VK LK P ++ L +Y+ YKQAT G N +PG+ DL KAKWDAWN
Sbjct: 9 SQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNA 68
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 69 LGSLPKEAARQNYVDLVSSL 88
>ref|NP_001159482.1| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo
sapiens].
Length = 364
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/80 (46%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +FE + +VK LK P ++ L +Y+ YKQAT G N +PG+ DL KAKWDAWN
Sbjct: 9 SQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNA 68
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 69 LGSLPKEAARQNYVDLVSSL 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,948,263
Number of extensions: 506916
Number of successful extensions: 1499
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 19
Length of query: 246
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 146
Effective length of database: 15,000,764
Effective search space: 2190111544
Effective search space used: 2190111544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculu... 155 3e-38
Alignment gi|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musc... 150 1e-36
Alignment gi|NP_084339.1| acyl-CoA-binding domain-containing protein 7 [M... 108 3e-24
Alignment gi|NP_067269.1| diazepam-binding inhibitor-like 5 [Mus musculus]. 91 1e-18
Alignment gi|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial i... 78 8e-15
Alignment gi|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 78 8e-15
Alignment gi|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial i... 78 8e-15
Alignment gi|NP_080264.1| acyl-Coenzyme A binding domain containing 4 iso... 73 2e-13
Alignment gi|NP_080959.1| acyl-CoA-binding domain-containing protein 6 is... 70 1e-12
Alignment gi|NP_001139253.1| acyl-CoA-binding domain-containing protein 6... 70 1e-12
>ref|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculus].
Length = 87
Score = 155 bits (392), Expect = 3e-38
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQAEF+KAAEEVK LKT+P D+EMLFIYSH+KQATVGD+NT+RPG+LDLKGKAKWD+WN
Sbjct: 1 MSQAEFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKKYGI 403
LKGTSKE AMK Y+ KV+ELKKKYGI
Sbjct: 61 KLKGTSKESAMKTYVEKVDELKKKYGI 87
>ref|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musculus].
Length = 135
Score = 150 bits (378), Expect = 1e-36
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = +2
Query: 152 AEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLK 331
AEF+KAAEEVK LKT+P D+EMLFIYSH+KQATVGD+NT+RPG+LDLKGKAKWD+WN LK
Sbjct: 52 AEFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWNKLK 111
Query: 332 GTSKEDAMKAYINKVEELKKKYGI 403
GTSKE AMK Y+ KV+ELKKKYGI
Sbjct: 112 GTSKESAMKTYVEKVDELKKKYGI 135
>ref|NP_084339.1| acyl-CoA-binding domain-containing protein 7 [Mus musculus].
Length = 88
Score = 108 bits (271), Expect = 3e-24
Identities = 50/85 (58%), Positives = 67/85 (78%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
QA+F++AA++V+ LK++P D+E+ +Y YKQ+ +GDIN P +LDLKGKAKW+AWN
Sbjct: 4 QADFDQAAQDVRKLKSRPEDEELKELYGLYKQSVIGDINIACPAMLDLKGKAKWEAWNLQ 63
Query: 329 KGTSKEDAMKAYINKVEELKKKYGI 403
KG SKEDAM AYI+K EL +KYGI
Sbjct: 64 KGLSKEDAMCAYISKARELIEKYGI 88
>ref|NP_067269.1| diazepam-binding inhibitor-like 5 [Mus musculus].
Length = 87
Score = 90.5 bits (223), Expect = 1e-18
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQ EFE A +K LK +D E L +YS YKQAT GD N P D++ KAK++AW
Sbjct: 1 MSQVEFEMACASLKQLKGPVSDQEKLLVYSFYKQATQGDCNIPVPPATDVRAKAKYEAWM 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKK 394
KG SK DAM+ YI KVEELKKK
Sbjct: 61 VNKGMSKMDAMRIYIAKVEELKKK 84
>ref|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
musculus].
Length = 358
Score = 77.8 bits (190), Expect = 8e-15
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +FE A +VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 4 SQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNA 63
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 64 LGSLPKETARQNYVDLVSSL 83
>ref|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
musculus].
Length = 358
Score = 77.8 bits (190), Expect = 8e-15
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +FE A +VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 4 SQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNA 63
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 64 LGSLPKETARQNYVDLVSSL 83
>ref|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial isoform a [Mus
musculus].
Length = 391
Score = 77.8 bits (190), Expect = 8e-15
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +FE A +VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 37 SQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNA 96
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 97 LGSLPKETARQNYVDLVSSL 116
>ref|NP_080264.1| acyl-Coenzyme A binding domain containing 4 isoform 1 [Mus
musculus].
Length = 329
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
Q +F+ A ++NL +P+ +EML YS+YKQAT+G RPG D G+ KWDA
Sbjct: 11 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 70
Query: 317 WNGLKGTSKEDAMKAYINKVEELKKK 394
WN L S+E+AM AYI++++ + +K
Sbjct: 71 WNRLGKMSREEAMSAYISEMKLVAQK 96
>ref|NP_080959.1| acyl-CoA-binding domain-containing protein 6 isoform 3 [Mus
musculus].
Length = 137
Score = 70.5 bits (171), Expect = 1e-12
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +2
Query: 158 FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLKGT 337
FEKAA V+ L + +++L++Y+ +KQ VG+ NT +P D +GK KW+AW L +
Sbjct: 46 FEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDS 105
Query: 338 SKEDAMKAYINKVEEL 385
S AM+ YI V++L
Sbjct: 106 SPSQAMQEYIAAVKKL 121
>ref|NP_001139253.1| acyl-CoA-binding domain-containing protein 6 isoform 2 [Mus
musculus].
Length = 139
Score = 70.5 bits (171), Expect = 1e-12
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +2
Query: 158 FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLKGT 337
FEKAA V+ L + +++L++Y+ +KQ VG+ NT +P D +GK KW+AW L +
Sbjct: 46 FEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDS 105
Query: 338 SKEDAMKAYINKVEEL 385
S AM+ YI V++L
Sbjct: 106 SPSQAMQEYIAAVKKL 121
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,548,399
Number of extensions: 430723
Number of successful extensions: 1244
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 15
Length of query: 246
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 147
Effective length of database: 12,643,995
Effective search space: 1858667265
Effective search space used: 1858667265
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999284.1| acyl-CoA-binding protein [Sus scrofa]. 179 1e-45
Alignment gi|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Su... 174 6e-44
Alignment gi|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containin... 111 4e-25
Alignment gi|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5... 99 2e-21
Alignment gi|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containin... 76 2e-14
Alignment gi|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containin... 76 2e-14
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 76 2e-14
Alignment gi|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containin... 71 5e-13
Alignment gi|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containin... 71 5e-13
Alignment gi|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containin... 69 3e-12
>ref|NP_999284.1| acyl-CoA-binding protein [Sus scrofa].
Length = 87
Score = 179 bits (454), Expect = 1e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN
Sbjct: 1 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKKKYGI 403
GLKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 61 GLKGTSKEDAMKAYINKVEELKKKYGI 87
>ref|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Sus scrofa].
Length = 159
Score = 174 bits (440), Expect = 6e-44
Identities = 83/95 (87%), Positives = 87/95 (91%)
Frame = +2
Query: 119 WNPCSPAGMSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
WN C+PA MSQAEFEKAAEE KNLKTKPADDEMLFI HYKQATVGDINT++PGILDLKG
Sbjct: 65 WNRCNPASMSQAEFEKAAEEAKNLKTKPADDEMLFISGHYKQATVGDINTKQPGILDLKG 124
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKKYGI 403
KAKWDAWNGL TSKEDAMKA+ NKVEELKKKYGI
Sbjct: 125 KAKWDAWNGLTWTSKEDAMKAHSNKVEELKKKYGI 159
>ref|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containing protein 7-like [Sus
scrofa].
Length = 88
Score = 111 bits (278), Expect = 4e-25
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +2
Query: 149 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGL 328
QA+F+KA E+V+ LKT+P D E+ +Y YKQ+ +GDI+ E P ++DLKGKAKW+AWN
Sbjct: 4 QADFDKATEDVRKLKTRPDDQELKELYGLYKQSIIGDIDIECPAMIDLKGKAKWEAWNFQ 63
Query: 329 KGTSKEDAMKAYINKVEELKKKYGI 403
KG SKEDAM AYI+K +EL +KYGI
Sbjct: 64 KGLSKEDAMSAYISKAKELIEKYGI 88
>ref|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5-like [Sus scrofa].
Length = 87
Score = 99.0 bits (245), Expect = 2e-21
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2
Query: 143 MSQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWN 322
M Q EFE A +K LK +D E L +YS YKQAT GD N P D+K KAKW+AWN
Sbjct: 1 MCQVEFEMACAAIKQLKGPVSDKEKLLVYSFYKQATQGDCNIPAPSATDVKAKAKWEAWN 60
Query: 323 GLKGTSKEDAMKAYINKVEELKK 391
G KG SK DAM+ Y+ KVEELKK
Sbjct: 61 GNKGMSKMDAMRLYVAKVEELKK 83
>ref|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 2 [Sus scrofa].
Length = 304
Score = 76.3 bits (186), Expect = 2e-14
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
SP Q +F+ A ++NL +P+ +EML YS+YKQATVG RPG D G
Sbjct: 7 SPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIG 66
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 67 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98
>ref|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 1 [Sus scrofa].
Length = 269
Score = 76.3 bits (186), Expect = 2e-14
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 131 SPAGMSQAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
SP Q +F+ A ++NL +P+ +EML YS+YKQATVG RPG D G
Sbjct: 7 SPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIG 66
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEELKKK 394
+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 67 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 75.9 bits (185), Expect = 2e-14
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 146 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 325
SQ +F KA +VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 41 SQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNA 100
Query: 326 LKGTSKEDAMKAYINKVEEL 385
L KE A + Y++ V L
Sbjct: 101 LGNLPKETARQNYVDLVSSL 120
>ref|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
isoform 2 [Sus scrofa].
Length = 265
Score = 71.2 bits (173), Expect = 5e-13
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +2
Query: 122 NPCSPAGMSQAE-FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
+P + A S E FEKAA ++ L + +++L++Y+ YKQ VG+ NT +P D +G
Sbjct: 33 SPETEASRSLTELFEKAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEG 92
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEEL 385
K KW+AW L +S AM+ YI V++L
Sbjct: 93 KQKWEAWKALGDSSPSQAMQEYIAVVKKL 121
>ref|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
isoform 1 [Sus scrofa].
Length = 282
Score = 71.2 bits (173), Expect = 5e-13
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +2
Query: 122 NPCSPAGMSQAE-FEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKG 298
+P + A S E FEKAA ++ L + +++L++Y+ YKQ VG+ NT +P D +G
Sbjct: 33 SPETEASRSLTELFEKAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEG 92
Query: 299 KAKWDAWNGLKGTSKEDAMKAYINKVEEL 385
K KW+AW L +S AM+ YI V++L
Sbjct: 93 KQKWEAWKALGDSSPSQAMQEYIAVVKKL 121
>ref|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containing protein 5 [Sus
scrofa].
Length = 520
Score = 68.6 bits (166), Expect = 3e-12
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 149 QAEFEKAAEEV----KNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 316
+ FE A + + KN +P ++ ML YS YKQAT G RPG D G+ KWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 317 WNGLKGTSKEDAMKAYINKVEELKK 391
WN L +KE+AM AY VEE+KK
Sbjct: 105 WNSLGEMTKEEAMIAY---VEEMKK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,138,595
Number of extensions: 431195
Number of successful extensions: 933
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 933
Number of HSP's successfully gapped: 10
Length of query: 246
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,953,820
Effective search space: 1343073000
Effective search space used: 1343073000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002566
(739 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 622 e-176
Sscrofa_Chr15 555 e-155
Sscrofa_Chr01 246 1e-62
>Sscrofa_Chr13
|| Length = 218635234
Score = 622 bits (314), Expect = e-176
Identities = 476/529 (89%), Gaps = 12/529 (2%)
Strand = Plus / Minus
Query: 67 gtggagtcctgggctgcctgcttccggctcctcaccgcctccgcgagc----tccctgga 122
||||||||||| ||||| |||||| |||||||||| |||||| || ||||||||
Sbjct: 85853354 gtggagtcctgtgctgctggcttccagctcctcaccagctccgcaggcaggctccctgga 85853295
Query: 123 atccttgcagccctgccggcatgtctcaggcggagtttgagaaagctgctgaggaagtta 182
||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 85853294 atcgttgcaaccctgccagcatgtctcaggcagagtttgagaaagctgctgaggaagcca 85853235
Query: 183 agaaccttaagaccaaaccagcagatgatgagatgctgttcatctacagccactacaaac 242
|||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 85853234 agaatcttaagaccaaaccagcagatgatgagatgctgttcatctccggccactacaaac 85853175
Query: 243 aagcgaccgtgggtgacataaatacagaacggcctggaattttggacctcaaaggcaagg 302
||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 85853174 aagcgactgtgggtgacataaatacaaaacagcctggaattttggacctcaaaggtaagg 85853115
Query: 303 ccaagtgggatgcctggaatgggctgaaagggacttccaaggaagatgccatgaaagcgt 362
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 85853114 ccaagtgggatgcctggaatgggctgacatggacttccaaggaagatgccatgaaagcac 85853055
Query: 363 atatcaacaaagtagaagaactaaagaaaaaatatggaatataagggactggatttgcct 422
||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 85853054 atagcaacaaagtagaagagctaaagaaaaaatatggaatataaggaactggatttgcct 85852995
Query: 423 gccagctttgcagttcac-----ctga---cataatgccttgtttttctaatactgtgga 474
|||||| |||||||||| |||| || ||||||| ||||||||||||||||||
Sbjct: 85852994 gccagccatgcagttcacataaactgatatgatgatgccttatttttctaatactgtgga 85852935
Query: 475 tgaagttaataaataactagttaagccagttgctcaagacagcccaggatgtaacgccag 534
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 85852934 taaagttaataaataactagttaacccagttgctcaagacagcccaggatgtaatgccag 85852875
Query: 535 cagattaggggctgaaatggctactaaccctcgccgagtagtttttatc 583
|||||| ||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 85852874 cagatttggggctgaaatggctacagaccctcactgagtagtttttatc 85852826
>Sscrofa_Chr15
|| Length = 157681621
Score = 555 bits (280), Expect = e-155
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 331 agggacttccaaggaagatgccatgaaagcgtatatcaacaaagtagaagaactaaagaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28583028 agggacttccaaggaagatgccatgaaagcgtatatcaacaaagtagaagaactaaagaa 28583087
Query: 391 aaaatatggaatataagggactggatttgcctgccagctttgcagttcacctgacataat 450
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 28583088 aaaatatggaatataagggactggatttgcctgccacctttgcagttcacctgacataat 28583147
Query: 451 gccttgtttttctaatactgtggatgaagttaataaataactagttaagccagttgctca 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28583148 gccttgtttttctaatactgtggatgaagttaataaataactagttaagccagttgctca 28583207
Query: 511 agacagcccaggatgtaacgccagcagattaggggctgaaatggctactaaccctcgccg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28583208 agacagcccaggatgtaacgccagcagattaggggctgaaatggctactaaccctcgccg 28583267
Query: 571 agtagtttttatcataggtcaattaaaagtacatttgttacttt 614
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28583268 agtagtttttatcataggtcaattaaaagtacatttgttacttt 28583311
Score = 262 bits (132), Expect = 2e-67
Identities = 135/136 (99%)
Strand = Plus / Plus
Query: 17 cccgagagcagtggggaaggcctgcggctgggcttctaaaggcgctgcaggtggagtcct 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28578086 cccgagagcagtggggaaggcctgcggctgggcttctaaaggcgctgcaggtggagtcct 28578145
Query: 77 gggctgcctgcttccggctcctcaccgcctccgcgagctccctggaatccttgcagccct 136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28578146 gtgctgcctgcttccggctcctcaccgcctccgcgagctccctggaatccttgcagccct 28578205
Query: 137 gccggcatgtctcagg 152
||||||||||||||||
Sbjct: 28578206 gccggcatgtctcagg 28578221
Score = 238 bits (120), Expect = 4e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 150 aggcggagtttgagaaagctgctgaggaagttaagaaccttaagaccaaaccagcagatg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28579263 aggcggagtttgagaaagctgctgaggaagttaagaaccttaagaccaaaccagcagatg 28579322
Query: 210 atgagatgctgttcatctacagccactacaaacaagcgaccgtgggtgacataaatacag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28579323 atgagatgctgttcatctacagccactacaaacaagcgaccgtgggtgacataaatacag 28579382
Score = 131 bits (66), Expect = 6e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 268 agaacggcctggaattttggacctcaaaggcaaggccaagtgggatgcctggaatgggct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28581619 agaacggcctggaattttggacctcaaaggcaaggccaagtgggatgcctggaatgggct 28581678
Query: 328 gaaagg 333
||||||
Sbjct: 28581679 gaaagg 28581684
>Sscrofa_Chr01
|| Length = 315321322
Score = 246 bits (124), Expect = 1e-62
Identities = 424/517 (82%), Gaps = 29/517 (5%)
Strand = Plus / Minus
Query: 70 gagtcctgggctgcctgcttccggctcctcaccgcctccgcgagctccctggaatccttg 129
||||||| |||||||||||| ||||||||||| ||||| | | |||||||||| |||
Sbjct: 105953701 gagtcctatgctgcctgcttctggctcctcaccacctccttggga-ccctggaatcattg 105953643
Query: 130 cagccctgccggcatgtctcaggcggagtttgagaaa-gctgctgaggaagttaagaacc 188
|| ||||| | |||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 105953642 caaccctgacagcatgtctcaggtagagtctgagaaaagctgctgaggaagttaagaacc 105953583
Query: 189 ttaagaccaaaccagcagatgatgagatgctgttcatctacagccactacaaacaagcga 248
| |||||||| ||||||||||| ||||||||||||||| || ||||||||||||| |
Sbjct: 105953582 tcaagaccaagccagcagatga---gatgctgttcatctaaggctactacaaacaagcaa 105953526
Query: 249 ccgtgggtgacataaatacagaacggcctggaattttggacctcaaaggcaaggccaagt 308
||| |||||||||| || |||||| ||||| || ||||| ||||||||||||||||| |
Sbjct: 105953525 ccggaggtgacataagtatagaacgacctggtatgttggagctcaaaggcaaggccaaat 105953466
Query: 309 gggatgcctggaatgggctgaaagggacttccaaggaagatgccatgaaagcgtatatca 368
||| ||| ||||||| |||||| |||||||||||||||| || ||| |||
Sbjct: 105953465 ggg---------atgagctgaaacagacttcgaaggaagatgccatgacagtgtaagtca 105953415
Query: 369 acaaagtagaagaactaaagaaaaaatatggaatataagggactggatttgcctgccagc 428
|||||||||||| ||||||||| | |||||| ||| |||| |||||||||||||||
Sbjct: 105953414 acaaagtagaag---taaagaaaatacatggaacgtaacagactagatttgcctgccagc 105953358
Query: 429 tttgcagttcacc-----tgacataatgccttgtttttctaatactgtggatgaagttaa 483
||||||||| | ||| |||| ||| | |||||||||||| |||||||||||
Sbjct: 105953357 catgcagttcatctaaaatgatataaagccct-cttttctaatactatggatgaagtt-- 105953301
Query: 484 taaataactagttaagccagttgctcaagacagcccaggatgtaacgc-cagcagattag 542
||||| ||||||| |||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 105953300 --aataagtagttaacccag-tgctcaagacagcccaggacttaactcttaacagattag 105953244
Query: 543 gggctgaaatggctactaaccctcgccgagtagtttt 579
||||||||||||||| | |||||| | ||||||||||
Sbjct: 105953243 gggctgaaatggctaatgaccctcactgagtagtttt 105953207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,990,823
Number of extensions: 490
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 10
Length of query: 739
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 718
Effective length of database: 2,808,413,156
Effective search space: 2016440646008
Effective search space used: 2016440646008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)