Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076965.1| lactoylglutathione lyase [Bos taurus]. 367 e-101
Alignment gi|XP_002688552.1| PREDICTED: glyoxalase I-like [Bos taurus]. 358 3e-99
Alignment gi|XP_001250503.1| PREDICTED: glyoxalase I-like [Bos taurus]. 358 3e-99
>ref|NP_001076965.1| lactoylglutathione lyase [Bos taurus].
Length = 184
Score = 367 bits (942), Expect = e-101
Identities = 174/184 (94%), Positives = 177/184 (96%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ AS GLTDEAAL+CCSDPDPSTKDFL QQTMLRIKDPKKSLDFYTRILGMTLLQK
Sbjct: 1 MAEPQPASGGLTDEAALSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRILGMTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFPTMKFSLYFLAYEDKNDIPKDK EK AW FSRKATLELTHNWGTEDDE+QSYHSGNS
Sbjct: 61 LDFPTMKFSLYFLAYEDKNDIPKDKDEKVAWVFSRKATLELTHNWGTEDDETQSYHSGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDVHGACKRFEELG+KFVKKPDDGKMKGLAFIQDPDGYWIEILNPN M
Sbjct: 121 DPRGFGHIGIAVPDVHGACKRFEELGIKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNTM 180
Query: 614 ITII 625
ITII
Sbjct: 181 ITII 184
>ref|XP_002688552.1| PREDICTED: glyoxalase I-like [Bos taurus].
Length = 184
Score = 358 bits (920), Expect = 3e-99
Identities = 171/184 (92%), Positives = 175/184 (95%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ S GLT++AAL+CCSDPDPSTKDFL QQTMLRIKDPKKSLDFYTRILGMTLLQK
Sbjct: 1 MAEPQPKSGGLTNKAALSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRILGMTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFPTMKFSLYFLAYEDKNDIPKDK EK AW FSRKATLELTHNWGTEDDE+QSYHSGNS
Sbjct: 61 LDFPTMKFSLYFLAYEDKNDIPKDKDEKVAWVFSRKATLELTHNWGTEDDETQSYHSGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPD YWIEILNPN M
Sbjct: 121 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDVYWIEILNPNTM 180
Query: 614 ITII 625
ITII
Sbjct: 181 ITII 184
>ref|XP_001250503.1| PREDICTED: glyoxalase I-like [Bos taurus].
Length = 184
Score = 358 bits (920), Expect = 3e-99
Identities = 171/184 (92%), Positives = 175/184 (95%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ S GLT++AAL+CCSDPDPSTKDFL QQTMLRIKDPKKSLDFYTRILGMTLLQK
Sbjct: 1 MAEPQPKSGGLTNKAALSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRILGMTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFPTMKFSLYFLAYEDKNDIPKDK EK AW FSRKATLELTHNWGTEDDE+QSYHSGNS
Sbjct: 61 LDFPTMKFSLYFLAYEDKNDIPKDKDEKVAWVFSRKATLELTHNWGTEDDETQSYHSGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPD YWIEILNPN M
Sbjct: 121 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDVYWIEILNPNTM 180
Query: 614 ITII 625
ITII
Sbjct: 181 ITII 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,725,942
Number of extensions: 836871
Number of successful extensions: 2442
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2441
Number of HSP's successfully gapped: 3
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532129.2| PREDICTED: similar to glyoxylase 1 [Canis famil... 364 e-101
>ref|XP_532129.2| PREDICTED: similar to glyoxylase 1 [Canis familiaris].
Length = 300
Score = 364 bits (935), Expect = e-101
Identities = 174/185 (94%), Positives = 178/185 (96%)
Frame = +2
Query: 71 AMAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQ 250
AMAEPQ ASSGLT+EAALACCS+PDPSTKDFL QQTMLRIKDPKKSLDFYTRILGMTLLQ
Sbjct: 116 AMAEPQPASSGLTEEAALACCSEPDPSTKDFLLQQTMLRIKDPKKSLDFYTRILGMTLLQ 175
Query: 251 KLDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGN 430
KLDFPTMKFSLYFLAYE+KNDIPKDK EK AWAFSRKATLELTHNWGTEDDE+QSYHSGN
Sbjct: 176 KLDFPTMKFSLYFLAYEEKNDIPKDKDEKVAWAFSRKATLELTHNWGTEDDETQSYHSGN 235
Query: 431 SDPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNN 610
SDPRGFGHIGIAVPDVH ACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN
Sbjct: 236 SDPRGFGHIGIAVPDVHSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNK 295
Query: 611 MITII 625
M TII
Sbjct: 296 MTTII 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,386,017
Number of extensions: 867496
Number of successful extensions: 2327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2325
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006699.2| lactoylglutathione lyase [Homo sapiens]. 344 7e-95
>ref|NP_006699.2| lactoylglutathione lyase [Homo sapiens].
Length = 184
Score = 344 bits (883), Expect = 7e-95
Identities = 161/184 (87%), Positives = 171/184 (92%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ S GLTDEAAL+CCSD DPSTKDFL QQTMLR+KDPKKSLDFYTR+LGMTL+QK
Sbjct: 1 MAEPQPPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
DFP MKFSLYFLAYEDKNDIPK+K EK AWA SRKATLELTHNWGTEDDE+QSYH+GNS
Sbjct: 61 CDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDV+ ACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN M
Sbjct: 121 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKM 180
Query: 614 ITII 625
T++
Sbjct: 181 ATLM 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,750,660
Number of extensions: 852994
Number of successful extensions: 2365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107032.1| lactoylglutathione lyase [Mus musculus]. 355 4e-98
Alignment gi|NP_079650.3| lactoylglutathione lyase [Mus musculus]. 355 4e-98
>ref|NP_001107032.1| lactoylglutathione lyase [Mus musculus].
Length = 184
Score = 355 bits (910), Expect = 4e-98
Identities = 167/184 (90%), Positives = 174/184 (94%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ ASSGLTDE A +CCSDPDPSTKDFL QQTMLRIKDPKKSLDFYTR+LG+TLLQK
Sbjct: 1 MAEPQPASSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFP MKFSLYFLAYEDKNDIPKDKSEK AW FSRKATLELTHNWGTEDDE+QSYH+GNS
Sbjct: 61 LDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDV+ ACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN +
Sbjct: 121 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKI 180
Query: 614 ITII 625
TII
Sbjct: 181 ATII 184
>ref|NP_079650.3| lactoylglutathione lyase [Mus musculus].
Length = 184
Score = 355 bits (910), Expect = 4e-98
Identities = 167/184 (90%), Positives = 174/184 (94%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQ ASSGLTDE A +CCSDPDPSTKDFL QQTMLRIKDPKKSLDFYTR+LG+TLLQK
Sbjct: 1 MAEPQPASSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFP MKFSLYFLAYEDKNDIPKDKSEK AW FSRKATLELTHNWGTEDDE+QSYH+GNS
Sbjct: 61 LDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDV+ ACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPN +
Sbjct: 121 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKI 180
Query: 614 ITII 625
TII
Sbjct: 181 ATII 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,477,752
Number of extensions: 735883
Number of successful extensions: 2069
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927992.1| PREDICTED: lactoylglutathione lyase isoform ... 383 e-107
>ref|XP_001927992.1| PREDICTED: lactoylglutathione lyase isoform 1 [Sus scrofa].
Length = 184
Score = 383 bits (984), Expect = e-107
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +2
Query: 74 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 253
MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK
Sbjct: 1 MAEPQLASSGLTDEAALACCSDPDPSTKDFLFQQTMLRIKDPKKSLDFYTRILGMTLLQK 60
Query: 254 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 433
LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS
Sbjct: 61 LDFPTMKFSLYFLAYEDKNDIPKDKSEKAAWAFSRKATLELTHNWGTEDDESQSYHSGNS 120
Query: 434 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 613
DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM
Sbjct: 121 DPRGFGHIGIAVPDVHGACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNNM 180
Query: 614 ITII 625
ITII
Sbjct: 181 ITII 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,918,229
Number of extensions: 533088
Number of successful extensions: 1543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1540
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002574
(1065 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 906 0.0
Sscrofa_Chr07 805 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 906 bits (457), Expect = 0.0
Identities = 760/855 (88%), Gaps = 8/855 (0%)
Strand = Plus / Plus
Query: 127 ctgctgctccgacccggaccccagcaccaaggatttt-ctttttcagcagaccatgcttc 185
||||||||| ||||| | |||||||||||||||||| || || |||||| ||| ||| |
Sbjct: 143517421 ctgctgctctgacccacatcccagcaccaaggatttttctcttgcagcaggccacgctgc 143517480
Query: 186 gaattaaggatcctaagaagtcattggatttttatactagaattcttggaatgacgctac 245
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 143517481 gaattaaggatcctaagaagtcgctggatttttatactagaattcttagaatgacgctac 143517540
Query: 246 tccaaaaattagattttcccactatgaaattttcactctatttcttggcttatgaggata 305
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 143517541 tccaaaaattagattttcccactatgacattttcactctatctcttggcttatgaggata 143517600
Query: 306 aaaatgacatcccaaaagataaaagtgaaaaagcagcatgggcattctccagaaaagcta 365
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 143517601 aaaatgacatcccaaaagataaagacgaaaaagtagcgtgggcattctccagaaaagcta 143517660
Query: 366 cgcttgaactgacacacaattggggcactgaagacgatgagagccagagttaccacagtg 425
||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct: 143517661 tgcttggactgacacacaactggggcactgaagatgatgccagccagagttaccacagtg 143517720
Query: 426 gcaattcagatcctcggggatttggtcacattggaattgctgttcctgatgttcacggtg 485
|||||||||| ||| ||| |||||||| |||||||| |||| ||||||| ||||| ||||
Sbjct: 143517721 gcaattcagacccttgggaatttggtcccattggaactgctcttcctgacgttcatggtg 143517780
Query: 486 cttgtaaaagatttgaagaactaggagtcaaatttgtgaagaaacctgatgatggtaaaa 545
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 143517781 cttgtagaagatgtgaagaactaggagccaaatttgtgaagaaacctgatgatggt-aaa 143517839
Query: 546 tgaaaggcttggcatttattcaagatcctgatggctactggatcgaaattttgaatccta 605
|||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 143517840 tgaaagccttggcatttattccagatcctgatggctactggattgaaattttgaatccta 143517899
Query: 606 acaatatgataactattatttagttctatgagaatactgctttgagatttcagtggagac 665
||| |||| ||||||||||||||||| || | ||| |||||||||||||||||||||
Sbjct: 143517900 gcaaaatgacaactattatttagttctgtg-ggatatgactttgagatttcagtggagac 143517958
Query: 666 attgtggaaggt-aaaaaggaaacagtgtgattcaagatattgagataacagaagcattt 724
| |||||||||| ||||||||||| ||||| ||||||| | ||| |||| ||||||||
Sbjct: 143517959 actgtggaaggtaaaaaaggaaactctgtgagccaagatagtcagacaacaaaagcattt 143518018
Query: 725 aagactagatggatcgtggtcccaattcaaattattcttaagcccatttccctttcccat 784
||| ||||||||||| |||||||||| ||||| ||||||| |||||||||||||| ||
Sbjct: 143518019 aaggctagatggatcacggtcccaattgcaattactcttaag-ccatttccctttcctat 143518077
Query: 785 tttagctatgtttttcacctaactgttcagtcattctggttttatagcagtgctttgtct 844
|| ||| |||||||| |||||||||||||||| || |||||| |||||||||||||||
Sbjct: 143518078 ttcagc--tgtttttccactaactgttcagtcatcctagttttaaagcagtgctttgtct 143518135
Query: 845 tatgtccttgaatatagttgtataactttactttttaaggcaataattagaacaattccc 904
|| ||||| || | || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 143518136 taggtcctggactgtacttgtataactttactttttaaggcaataattagaacaatcccc 143518195
Query: 905 ttcagaggctgcatttgctttctttctcct-nnnnnnnnncaagtctacaaatctgcctt 963
|||||| |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 143518196 ttcagaagctgcatttgctttctatctcctaaaaaagatacaagtctacaaatctgccct 143518255
Query: 964 tgaatcatcattttc 978
|||||||||||||||
Sbjct: 143518256 tgaatcatcattttc 143518270
>Sscrofa_Chr07
|| Length = 134764511
Score = 805 bits (406), Expect = 0.0
Identities = 431/441 (97%), Gaps = 1/441 (0%)
Strand = Plus / Minus
Query: 539 ggtaaaatgaaaggcttggcatttattcaagatcctgatggctactggatcgaaattttg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245619 ggtaaaatgaaaggcttggcatttattcaagatcctgatggctactggatcgaaattttg 39245560
Query: 599 aatcctaacaatatgataactattatttagttctatgagaatactgctttgagatttcag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245559 aatcctaacaatatgataactattatttagttctatgagaatactgctttgagatttcag 39245500
Query: 659 tggagacattgtggaaggtaaaaaggaaacagtgtgattcaagatattgagataacagaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245499 tggagacattgtggaaggtaaaaaggaaacagtgtgattcaagatattgagataacagaa 39245440
Query: 719 gcatttaagactagatggatcgtggtcccaattcaaattattcttaagcccatttccctt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245439 gcatttaagactagatggatcgtggtcccaattcaaattattcttaagcccatttccctt 39245380
Query: 779 tcccattttagctatgtttttcacctaactgttcagtcattctggttttatagcagtgct 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245379 tcccattttagctatgtttttcacctaactgttcagtcattctggttttatagcagtgct 39245320
Query: 839 ttgtcttatgtccttgaatatagttgtataactttactttttaaggcaataattagaaca 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39245319 ttgtcttatgtccttgaatatagttgtataactttactttttaaggcaataattagaaca 39245260
Query: 899 attcccttcagaggctgcatttgctttctttctcct-nnnnnnnnncaagtctacaaatc 957
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 39245259 attcccttcagaggctgcatttgctttctttctcctaaaaaagatacaagtctacaaatc 39245200
Query: 958 tgcctttgaatcatcattttc 978
|||||||||||||||||||||
Sbjct: 39245199 tgcctttgaatcatcattttc 39245179
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 2 agagggagcttggggcggctgtgggaggctgccgcattctcggggaccgtcttcggtgat 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 39271496 agagggagcttggggcggctgtgggaggctgctgcattctcggggaccgtcttcggtgat 39271437
Query: 62 acgcaattagccatggcagaaccgcagctcgcgtccagcggcctcaccgacgaggctgcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39271436 acgcaattagccatggcagaaccgcagctcgcgtccagcggcctcaccgacgaggctgcc 39271377
Query: 122 ctcgcctgctgctccgacccggaccccagcaccaagg 158
|||||||||||||||||||||||||||||||||||||
Sbjct: 39271376 ctcgcctgctgctccgacccggaccccagcaccaagg 39271340
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 241 gctactccaaaaattagattttcccactatgaaattttcactctatttcttggcttatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39250939 gctactccaaaaattagattttcccactatgaaattttcactctatttcttggcttatga 39250880
Query: 301 ggataaaaatgacatcccaaaagataaaagtgaaaaagcagcatgggcattctccagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39250879 ggataaaaatgacatcccaaaagataaaagtgaaaaagcagcatgggcattctccagaaa 39250820
Query: 361 agctacgcttgaactgacaca 381
|||||||||||||||||||||
Sbjct: 39250819 agctacgcttgaactgacaca 39250799
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 449 ggtcacattggaattgctgttcctgatgttcacggtgcttgtaaaagatttgaagaacta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39248745 ggtcacattggaattgctgttcctgatgttcacggtgcttgtaaaagatttgaagaacta 39248686
Query: 509 ggagtcaaatttgtgaagaaacctgatgatggt 541
|||||||||||||||||||||||||||||||||
Sbjct: 39248685 ggagtcaaatttgtgaagaaacctgatgatggt 39248653
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 156 aggattttctttttcagcagaccatgcttcgaattaaggatcctaagaagtcattggatt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39254917 aggattttctttttcagcagaccatgcttcgaattaaggatcctaagaagtcattggatt 39254858
Query: 216 tttatactagaattcttggaatgacg 241
||||||||||||||||||||||||||
Sbjct: 39254857 tttatactagaattcttggaatgacg 39254832
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 382 caattggggcactgaagacgatgagagccagagttaccacagtggcaattcagatcctcg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39249796 caattggggcactgaagacgatgagagccagagttaccacagtggcaattcagatcctcg 39249737
Query: 442 gggatttggt 451
||||||||||
Sbjct: 39249736 gggatttggt 39249727
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,017,039
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 10
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)