Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029920.1| trans-2,3-enoyl-CoA reductase [Bos taurus]. 629 e-180
Alignment gi|NP_001073793.1| trans-2,3-enoyl-CoA reductase-like [Bos taur... 346 2e-95
Alignment gi|NP_001192866.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Bos... 56 6e-08
Alignment gi|XP_002691270.1| PREDICTED: steroid 5-alpha-reductase 2-like ... 56 6e-08
Alignment gi|NP_001092607.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Bos... 50 5e-06
>ref|NP_001029920.1| trans-2,3-enoyl-CoA reductase [Bos taurus].
Length = 308
Score = 629 bits (1623), Expect = e-180
Identities = 297/301 (98%), Positives = 300/301 (99%)
Frame = +2
Query: 125 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLK 304
MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTK+HPQWYPARQSLRLDPKGKSLK
Sbjct: 1 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK 60
Query: 305 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 484
DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG KYDFT
Sbjct: 61 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFT 120
Query: 485 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 664
SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
Sbjct: 121 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 180
Query: 665 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 844
HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPT+NPFTWLF
Sbjct: 181 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTRNPFTWLF 240
Query: 845 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKG+HRSYLKEFRDYPPLR
Sbjct: 241 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR 300
Query: 1025 M 1027
M
Sbjct: 301 M 301
>ref|NP_001073793.1| trans-2,3-enoyl-CoA reductase-like [Bos taurus].
Length = 363
Score = 346 bits (887), Expect = 2e-95
Identities = 156/294 (53%), Positives = 206/294 (70%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EILDA+T++++C +DKV ++TI ++K F K+ PQWYP+R L+L+ G LKD
Sbjct: 59 HFEIEILDAQTKKQICIVDKVTQKSTIHDVKQKFHKACPQWYPSRVGLQLERGGPFLKDN 118
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLYF DLG Q+SW TVFL EY GPL IYLLFY R+P+IY K
Sbjct: 119 LTIQSVAASSIVTLYFTDLGQQVSWTTVFLAEYTGPLLIYLLFYLRIPYIYNMKESSRRL 178
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
H VVHLAC CH HYI+ LLETLFVH+ S G L+N+ K+C +YWGF +W+AYYINHP
Sbjct: 179 CHPVVHLACFCHCIHYIRYLLETLFVHKVSSGHTSLKNLLKSCAFYWGFTSWIAYYINHP 238
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLL 850
YTPP++G +QV ++ F+IC+ GN I++ L G+ P P NPFTW+F L
Sbjct: 239 RYTPPSFGYRQVAISAINFLICEAGNHFINVVLSHPSHTGNNA-CFPSPNYNPFTWMFFL 297
Query: 851 VSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDY 1012
VSCPNYTYE+GSWI F IMTQ LPV +F+L+ QM++WAK +H+ YLK+F Y
Sbjct: 298 VSCPNYTYEIGSWISFTIMTQTLPVGIFTLLMSIQMSLWAKKKHKIYLKKFSSY 351
>ref|NP_001192866.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Bos taurus].
Length = 254
Score = 55.8 bits (133), Expect = 6e-08
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +2
Query: 593 PLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHM--A 766
P+ +F+ + G YY+ + P + ++ +L IF+ +IH
Sbjct: 108 PVVFLFRGFVFCMGNGLLQGYYLVYCAEYPAEWYTD-IRFSLGIFLFILGMGINIHSDYI 166
Query: 767 LRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVG 946
LR LR G +IP LF VS N+ E+ WIG+A+ + LP F+
Sbjct: 167 LRQLRKPGEIIYRIPQGG------LFTYVSGANFLGEIIEWIGYALASWSLPALAFAFFS 220
Query: 947 FTQMTIWAKGQHRSYLKEFRDYPPLR 1024
+ + A HR YLK F DYP R
Sbjct: 221 LCFLGLRAFHHHRFYLKMFDDYPKSR 246
>ref|XP_002691270.1| PREDICTED: steroid 5-alpha-reductase 2-like [Bos taurus].
Length = 254
Score = 55.8 bits (133), Expect = 6e-08
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +2
Query: 593 PLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHM--A 766
P+ +F+ + G YY+ + P + ++ +L IF+ +IH
Sbjct: 108 PVVFLFRGFVFCMGNGLLQGYYLVYCAEYPAEWYTD-IRFSLGIFLFILGMGINIHSDYI 166
Query: 767 LRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVG 946
LR LR G +IP LF VS N+ E+ WIG+A+ + LP F+
Sbjct: 167 LRQLRKPGEIIYRIPQGG------LFTYVSGANFLGEIIEWIGYALASWSLPALAFAFFS 220
Query: 947 FTQMTIWAKGQHRSYLKEFRDYPPLR 1024
+ + A HR YLK F DYP R
Sbjct: 221 LCFLGLRAFHHHRFYLKMFDDYPKSR 246
>ref|NP_001092607.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Bos taurus].
Length = 257
Score = 49.7 bits (117), Expect = 5e-06
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Frame = +2
Query: 533 HYIKRLLETLFVHRFSHGTMPLRNI---FKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQ 703
HY +R L F+ R MPL F CTY + Y + +Y +
Sbjct: 92 HYAQRSLVFPFLIRGGK-PMPLYAFLLAFIFCTYNGYLQS--RYLSQYAVYADDWLSDPR 148
Query: 704 VKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVG 883
A+++I L N LR+LR G KIP LF +S NY EV
Sbjct: 149 FLTGSALWLIGMLINIHSDHVLRNLRKPGETGYKIPRGG------LFEYISAANYFGEVV 202
Query: 884 SWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
W G+A+ + + F++ F + A+ H+ Y ++F DYP R
Sbjct: 203 EWCGYALASWSIQGWAFAVFTFCVLFTRAQQHHKWYHEKFEDYPKFR 249
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,624,546
Number of extensions: 1280296
Number of successful extensions: 6376
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6350
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852850.1| PREDICTED: similar to Synaptic glycoprotein SC2... 630 0.0
Alignment gi|XP_532387.1| PREDICTED: similar to steroid 5 alpha-reductase... 342 5e-94
Alignment gi|XP_533893.1| PREDICTED: similar to Synaptic glycoprotein SC2... 315 6e-86
Alignment gi|XP_861244.1| PREDICTED: similar to steroid 5 alpha-reductase... 291 1e-78
Alignment gi|XP_861275.1| PREDICTED: similar to steroid 5 alpha-reductase... 256 3e-68
Alignment gi|XP_532922.2| PREDICTED: similar to 3-oxo-5 alpha-steroid 4-d... 56 7e-08
Alignment gi|XP_535799.2| PREDICTED: similar to 3-oxo-5-alpha-steroid 4-d... 52 1e-06
>ref|XP_852850.1| PREDICTED: similar to Synaptic glycoprotein SC2 isoform 2 [Canis
familiaris].
Length = 308
Score = 630 bits (1624), Expect = 0.0
Identities = 296/301 (98%), Positives = 300/301 (99%)
Frame = +2
Query: 125 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLK 304
MKHYEVEILDAKTREKLCFLDKVEP ATIAEIKNLFTK+HPQWYPARQSLRLDPKGKSLK
Sbjct: 1 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK 60
Query: 305 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 484
DED+LQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT
Sbjct: 61 DEDILQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 120
Query: 485 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 664
SSRH+VVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
Sbjct: 121 SSRHSVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 180
Query: 665 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 844
HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
Sbjct: 181 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 240
Query: 845 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKG+HRSYLKEFRDYPPLR
Sbjct: 241 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR 300
Query: 1025 M 1027
M
Sbjct: 301 M 301
>ref|XP_532387.1| PREDICTED: similar to steroid 5 alpha-reductase 2-like 2 isoform 2
[Canis familiaris].
Length = 363
Score = 342 bits (876), Expect = 5e-94
Identities = 154/294 (52%), Positives = 202/294 (68%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EILDA TR+++C +DKV +TI ++K F K+ P WYP+R L+L+ G LKD
Sbjct: 59 HFEIEILDAHTRKQICIVDKVVQTSTIHDVKQKFHKACPNWYPSRVGLQLEQGGPFLKDY 118
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLYF DLG Q+SW+T+FL EY GPL IYLLFY R+P+IY K
Sbjct: 119 ITVQSIAASSIVTLYFTDLGRQVSWITIFLAEYTGPLLIYLLFYLRIPYIYDMKESSRRL 178
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
RH VVHLAC CH HYI+ LLETLFVH+ S G PL+N+ K C +YWGF +W+AYYINHP
Sbjct: 179 RHPVVHLACFCHCIHYIRYLLETLFVHKVSAGHTPLKNLIKGCAFYWGFTSWIAYYINHP 238
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLL 850
YTPP++G +QV ++ F+IC+ GN I++ L G P P NPFTW F
Sbjct: 239 RYTPPSFGNRQVTVSAINFLICEAGNHFINVILAHPNHTGINA-CCPSPNYNPFTWTFFQ 297
Query: 851 VSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDY 1012
VSCPNYTYE+GSWI F +MTQ LPV +F+L+ QM++WA+ +H+ YLK+F Y
Sbjct: 298 VSCPNYTYEIGSWISFTVMTQTLPVGVFTLLMSIQMSLWAQKKHKVYLKKFNSY 351
>ref|XP_533893.1| PREDICTED: similar to Synaptic glycoprotein SC2 isoform 1 [Canis
familiaris].
Length = 153
Score = 315 bits (806), Expect = 6e-86
Identities = 145/146 (99%), Positives = 146/146 (100%)
Frame = +2
Query: 590 MPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMAL 769
MPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMAL
Sbjct: 1 MPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMAL 60
Query: 770 RDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGF 949
RDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGF
Sbjct: 61 RDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGF 120
Query: 950 TQMTIWAKGQHRSYLKEFRDYPPLRM 1027
TQMTIWAKG+HRSYLKEFRDYPPLRM
Sbjct: 121 TQMTIWAKGKHRSYLKEFRDYPPLRM 146
>ref|XP_861244.1| PREDICTED: similar to steroid 5 alpha-reductase 2-like 2 isoform 3
[Canis familiaris].
Length = 312
Score = 291 bits (744), Expect = 1e-78
Identities = 132/251 (52%), Positives = 170/251 (67%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EILDA TR+++C +DKV +TI ++K F K+ P WYP+R L+L+ G LKD
Sbjct: 59 HFEIEILDAHTRKQICIVDKVVQTSTIHDVKQKFHKACPNWYPSRVGLQLEQGGPFLKDY 118
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLYF DLG Q+SW+T+FL EY GPL IYLLFY R+P+IY K
Sbjct: 119 ITVQSIAASSIVTLYFTDLGRQVSWITIFLAEYTGPLLIYLLFYLRIPYIYDMKESSRRL 178
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
RH VVHLAC CH HYI+ LLETLFVH+ S G PL+N+ K C +YWGF +W+AYYINHP
Sbjct: 179 RHPVVHLACFCHCIHYIRYLLETLFVHKVSAGHTPLKNLIKGCAFYWGFTSWIAYYINHP 238
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLL 850
YTPP++G +QV ++ F+IC+ GN I++ L G P P NPFTW F
Sbjct: 239 RYTPPSFGNRQVTVSAINFLICEAGNHFINVILAHPNHTGINA-CCPSPNYNPFTWTFFQ 297
Query: 851 VSCPNYTYEVG 883
VSCPNYTYE+G
Sbjct: 298 VSCPNYTYELG 308
>ref|XP_861275.1| PREDICTED: similar to steroid 5 alpha-reductase 2-like 2 isoform 4
[Canis familiaris].
Length = 282
Score = 256 bits (654), Expect = 3e-68
Identities = 113/213 (53%), Positives = 150/213 (70%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EILDA TR+++C +DKV +TI ++K F K+ P WYP+R L+L+ G LKD
Sbjct: 59 HFEIEILDAHTRKQICIVDKVVQTSTIHDVKQKFHKACPNWYPSRVGLQLEQGGPFLKDY 118
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLYF DLG Q+SW+T+FL EY GPL IYLLFY R+P+IY K
Sbjct: 119 ITVQSIAASSIVTLYFTDLGRQVSWITIFLAEYTGPLLIYLLFYLRIPYIYDMKESSRRL 178
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
RH VVHLAC CH HYI+ LLETLFVH+ S G PL+N+ K C +YWGF +W+AYYINHP
Sbjct: 179 RHPVVHLACFCHCIHYIRYLLETLFVHKVSAGHTPLKNLIKGCAFYWGFTSWIAYYINHP 238
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMAL 769
YTPP++G +QV ++ F+IC+ GN I++ L
Sbjct: 239 RYTPPSFGNRQVTVSAINFLICEAGNHFINVIL 271
>ref|XP_532922.2| PREDICTED: similar to 3-oxo-5 alpha-steroid 4-dehydrogenase 2 [Canis
familiaris].
Length = 254
Score = 55.8 bits (133), Expect = 7e-08
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 683 PTYGAQQVKLALAIFVICQLGNFSIHM--ALRDLRPAGSKTRKIPYPTKNPFTWLFLLVS 856
P V+ +L IF+ +IH LR LR G +IP LF VS
Sbjct: 137 PAEWYMDVRFSLGIFLFILGMGINIHSDYILRQLRKPGEVIYRIPQGG------LFTYVS 190
Query: 857 CPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
N+ E+ WIG+A+ T LP F+ + + A HR YLK F DYP R
Sbjct: 191 GANFLGEIIEWIGYALATWSLPALAFAFFSLCFLGLRAFHHHRFYLKMFEDYPKSR 246
>ref|XP_535799.2| PREDICTED: similar to 3-oxo-5-alpha-steroid 4-dehydrogenase 1
(Steroid 5-alpha-reductase 1) (SR type 1) (S5AR) [Canis
familiaris].
Length = 255
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Frame = +2
Query: 533 HYIKRLLETLFVHRFSHGTMPLRNIFKNCTY--YWGFAAWMAYYINHPLYTPPTYGAQQV 706
HY +R L F+ R MPL T+ Y G+ Y + +Y +
Sbjct: 90 HYAQRSLIFPFLIRGGK-PMPLYTCVLAFTFCVYNGYLQ-SRYLSQYAVYADDWVTDPRF 147
Query: 707 KLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGS 886
+ +++I L N LR+LR G KIP LF V+ NY EV
Sbjct: 148 LVGFCLWLIGMLINIHSDHILRNLRKPGETGYKIPRGG------LFEYVTAANYFGEVVE 201
Query: 887 WIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
W G+ + + + F+L F + A+ HR YL++F DYP R
Sbjct: 202 WCGYGLASWSIQGGAFALFTFCILLTRAQQHHRWYLEKFEDYPKFR 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,613,415
Number of extensions: 1328782
Number of successful extensions: 6232
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6205
Number of HSP's successfully gapped: 7
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612510.1| trans-2,3-enoyl-CoA reductase [Homo sapiens]. 632 0.0
Alignment gi|NP_001010874.2| trans-2,3-enoyl-CoA reductase-like [Homo sap... 341 6e-94
Alignment gi|NP_000339.2| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Homo s... 56 5e-08
>ref|NP_612510.1| trans-2,3-enoyl-CoA reductase [Homo sapiens].
Length = 308
Score = 632 bits (1629), Expect = 0.0
Identities = 298/301 (99%), Positives = 300/301 (99%)
Frame = +2
Query: 125 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLK 304
MKHYEVEILDAKTREKLCFLDKVEP ATIAEIKNLFTK+HPQWYPARQSLRLDPKGKSLK
Sbjct: 1 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK 60
Query: 305 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 484
DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT
Sbjct: 61 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 120
Query: 485 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 664
SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
Sbjct: 121 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 180
Query: 665 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 844
HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
Sbjct: 181 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 240
Query: 845 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKG+HRSYLKEFRDYPPLR
Sbjct: 241 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR 300
Query: 1025 M 1027
M
Sbjct: 301 M 301
>ref|NP_001010874.2| trans-2,3-enoyl-CoA reductase-like [Homo sapiens].
Length = 363
Score = 341 bits (875), Expect = 6e-94
Identities = 153/294 (52%), Positives = 204/294 (69%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EI DA+TR+++C LDKV +TI ++K F K+ P+WYP+R L+L+ G LKD
Sbjct: 59 HFEIEIFDAQTRKQICILDKVTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDY 118
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLY DLG Q+SW TVFL EY GPL IYLLFY R+P IY K
Sbjct: 119 ITIQSIAASSIVTLYATDLGQQVSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARRL 178
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
RH VVHLAC CH HYI+ LLETLFVH+ S G PL+N+ +C +YWGF +W+AYYINHP
Sbjct: 179 RHPVVHLACFCHCIHYIRYLLETLFVHKVSAGHTPLKNLIMSCAFYWGFTSWIAYYINHP 238
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLL 850
LYTPP++G +Q+ ++ F+IC+ GN I++ L G+ P P NPFTW+F L
Sbjct: 239 LYTPPSFGNRQITVSAINFLICEAGNHFINVMLSHPNHTGNNA-CFPSPNYNPFTWMFFL 297
Query: 851 VSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDY 1012
VSCPNYTYE+GSWI F +MTQ LPV +F+L+ QM++WA+ +H+ YL++F Y
Sbjct: 298 VSCPNYTYEIGSWISFTVMTQTLPVGIFTLLMSIQMSLWAQKKHKIYLRKFNSY 351
>ref|NP_000339.2| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Homo sapiens].
Length = 254
Score = 56.2 bits (134), Expect = 5e-08
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +2
Query: 605 IFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHM--ALRDL 778
I + + G YY+ + P + ++ +L +F+ +IH LR L
Sbjct: 112 ILRGTAFCTGNGVLQGYYLIYCAEYPDGWYTD-IRFSLGVFLFILGMGINIHSDYILRQL 170
Query: 779 RPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQM 958
R G + +IP LF VS N+ E+ WIG+A+ T LP F+ +
Sbjct: 171 RKPGEISYRIPQGG------LFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFSLCFL 224
Query: 959 TIWAKGQHRSYLKEFRDYPPLR 1024
+ A HR YLK F DYP R
Sbjct: 225 GLRAFHHHRFYLKMFEDYPKSR 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,515,127
Number of extensions: 1283565
Number of successful extensions: 6025
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6000
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598879.1| trans-2,3-enoyl-CoA reductase isoform 1 [Mus mu... 619 e-177
Alignment gi|NP_081455.1| trans-2,3-enoyl-CoA reductase isoform 2 [Mus mu... 573 e-164
Alignment gi|NP_722496.2| trans-2,3-enoyl-CoA reductase-like [Mus musculu... 330 1e-90
Alignment gi|NP_780492.2| 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Mus mu... 54 3e-07
Alignment gi|NP_444418.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Mus mu... 53 4e-07
>ref|NP_598879.1| trans-2,3-enoyl-CoA reductase isoform 1 [Mus musculus].
Length = 308
Score = 619 bits (1597), Expect = e-177
Identities = 290/301 (96%), Positives = 297/301 (98%)
Frame = +2
Query: 125 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLK 304
MKHYEVEI DAKTREKLCFLDKVEPQATI+EIK LFTK+HPQWYPARQSLRLDPKGKSLK
Sbjct: 1 MKHYEVEIRDAKTREKLCFLDKVEPQATISEIKTLFTKTHPQWYPARQSLRLDPKGKSLK 60
Query: 305 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 484
DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG KYDFT
Sbjct: 61 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFT 120
Query: 485 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 664
SSRHTVVHLAC+CHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
Sbjct: 121 SSRHTVVHLACMCHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 180
Query: 665 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 844
HPLYTPPTYG QQVKLALA+FVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
Sbjct: 181 HPLYTPPTYGVQQVKLALAVFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 240
Query: 845 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
LLVSCPNYTYEVGSWIGFAI+TQC+PVALFSLVGFTQMTIWAKG+HRSYLKEFRDYPPLR
Sbjct: 241 LLVSCPNYTYEVGSWIGFAILTQCVPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR 300
Query: 1025 M 1027
M
Sbjct: 301 M 301
>ref|NP_081455.1| trans-2,3-enoyl-CoA reductase isoform 2 [Mus musculus].
Length = 293
Score = 573 bits (1478), Expect = e-164
Identities = 274/301 (91%), Positives = 282/301 (93%)
Frame = +2
Query: 125 MKHYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLK 304
MKHYEVEI DAKTREKLCFLDKVEPQATI+EIK LFTK+ +GKSLK
Sbjct: 1 MKHYEVEIRDAKTREKLCFLDKVEPQATISEIKTLFTKT---------------QGKSLK 45
Query: 305 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFT 484
DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG KYDFT
Sbjct: 46 DEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFT 105
Query: 485 SSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 664
SSRHTVVHLAC+CHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN
Sbjct: 106 SSRHTVVHLACMCHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYIN 165
Query: 665 HPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 844
HPLYTPPTYG QQVKLALA+FVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF
Sbjct: 166 HPLYTPPTYGVQQVKLALAVFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLF 225
Query: 845 LLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
LLVSCPNYTYEVGSWIGFAI+TQC+PVALFSLVGFTQMTIWAKG+HRSYLKEFRDYPPLR
Sbjct: 226 LLVSCPNYTYEVGSWIGFAILTQCVPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLR 285
Query: 1025 M 1027
M
Sbjct: 286 M 286
>ref|NP_722496.2| trans-2,3-enoyl-CoA reductase-like [Mus musculus].
Length = 361
Score = 330 bits (846), Expect = 1e-90
Identities = 151/294 (51%), Positives = 199/294 (67%)
Frame = +2
Query: 131 HYEVEILDAKTREKLCFLDKVEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDE 310
H+E+EILDA TR+++C +DKV +TI ++K F K+ P+WYP+R L+L+ G L+D
Sbjct: 57 HFEIEILDAHTRKQICIVDKVTQTSTIHDVKQKFHKACPKWYPSRIGLQLEYGGPYLRDY 116
Query: 311 DVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSS 490
+Q + + TLYF DLG Q+ W TVFL EY+GPL IYLLFY R +IY K
Sbjct: 117 ITVQSVAASSIITLYFTDLGQQVGWTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESTRWP 176
Query: 491 RHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHP 670
RH VVHLA CH HYI+ LLETLFVH+ S G P++N+ K C +YWGF +WMAYYINHP
Sbjct: 177 RHPVVHLAFFCHCIHYIRLLLETLFVHKVSTGHSPMKNLIKGCAFYWGFTSWMAYYINHP 236
Query: 671 LYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLL 850
YTPP++G +QV ++ F+ C+ GN I+ L GS P P NPFTWLF L
Sbjct: 237 RYTPPSFGNRQVIVSAINFLFCEAGNHFINTVLAHPNHTGSNA-CFPSPNYNPFTWLFFL 295
Query: 851 VSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDY 1012
VSCPNYTYE+GSWI F +MTQ LPV +F+++ QM++WA+ +H+ Y K+F Y
Sbjct: 296 VSCPNYTYEIGSWISFTVMTQTLPVGIFTILMTIQMSLWARKKHKIYRKKFNSY 349
>ref|NP_780492.2| 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Mus musculus].
Length = 255
Score = 53.5 bits (127), Expect = 3e-07
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Frame = +2
Query: 533 HYIKRLLETLFVHRFSHGTMPLRNI--FKNCT--------YYWGFAAWMAYYINHPLYTP 682
HY++R L + R T+ + F CT Y FA + ++ HP +
Sbjct: 90 HYVQRTLVFPVLIRGGKPTLLFTFVLAFLFCTLNGYLQSRYLSQFAVYAEDWVTHPCFLT 149
Query: 683 PTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCP 862
A++++ + N LR+LR G KIP LF VS
Sbjct: 150 ----------GFALWLVGMVINIHSDHILRNLRKPGETGYKIPRGG------LFEYVSSA 193
Query: 863 NYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
NY E+ W GFA+ + L +F+L + A+ H+ YL++F DYP R
Sbjct: 194 NYFGELVEWCGFALASWSLQGVVFALFTLCALFTRARQHHQWYLEKFEDYPKTR 247
>ref|NP_444418.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Mus musculus].
Length = 254
Score = 53.1 bits (126), Expect = 4e-07
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 3/169 (1%)
Frame = +2
Query: 527 SFHYIKRLLETLFVHRFSHGTMPLRNIF--KNCTYYWGFAAWMAYYINHPL-YTPPTYGA 697
S HY R F++ PL + K + G AYY+ + Y Y
Sbjct: 88 SAHYFHRT----FIYSLLTRGRPLSAVIFLKATAFCIGNGLLQAYYLVYCAEYPEEWYTD 143
Query: 698 QQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYE 877
+ + + F++ N LR LR G +IP LF VS N+ E
Sbjct: 144 MRFSVGVFFFILGMGINIHSDCMLRQLRKPGEVIYRIPQGG------LFTYVSGANFLGE 197
Query: 878 VGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDYPPLR 1024
+ W+G+A+ T +P F+ + + A HR YLK F+DYP R
Sbjct: 198 IIEWMGYALATWSVPAFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSR 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,404,113
Number of extensions: 1057330
Number of successful extensions: 4833
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4814
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123420.2| PREDICTED: trans-2,3-enoyl-CoA reductase-lik... 556 e-159
Alignment gi|XP_003356997.1| PREDICTED: trans-2,3-enoyl-CoA reductase-lik... 321 4e-88
Alignment gi|NP_999153.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Sus sc... 58 8e-09
>ref|XP_003123420.2| PREDICTED: trans-2,3-enoyl-CoA reductase-like [Sus scrofa].
Length = 284
Score = 556 bits (1434), Expect = e-159
Identities = 260/264 (98%), Positives = 263/264 (99%)
Frame = +2
Query: 236 KSHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAG 415
+ +PQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAG
Sbjct: 14 EDYPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAG 73
Query: 416 PLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMP 595
PLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMP
Sbjct: 74 PLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMP 133
Query: 596 LRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRD 775
LRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRD
Sbjct: 134 LRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRD 193
Query: 776 LRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQ 955
LRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQ
Sbjct: 194 LRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQ 253
Query: 956 MTIWAKGQHRSYLKEFRDYPPLRM 1027
MTIWAKG+HRSYLKEFRDYPPLRM
Sbjct: 254 MTIWAKGKHRSYLKEFRDYPPLRM 277
>ref|XP_003356997.1| PREDICTED: trans-2,3-enoyl-CoA reductase-like, partial [Sus scrofa].
Length = 285
Score = 321 bits (823), Expect = 4e-88
Identities = 144/274 (52%), Positives = 191/274 (69%)
Frame = +2
Query: 191 VEPQATIAEIKNLFTKSHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLG 370
V ++TI ++K F K+ P+WYP+R L+L+ G LKD +Q + V + TLYF DLG
Sbjct: 1 VTQKSTIQDVKQKFHKACPKWYPSRVGLQLERGGPFLKDYRTIQSIAVSSIITLYFTDLG 60
Query: 371 AQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRL 550
Q+SW TVFL EY GPL IYLLFY R+P+IY K RH VVHLAC CH HY++ L
Sbjct: 61 QQVSWTTVFLAEYTGPLLIYLLFYLRIPYIYDIKESSRRLRHPVVHLACFCHCIHYLRYL 120
Query: 551 LETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFV 730
LETLFVH+ S G PL+N+ K+C +YWGF +W+AYYINHP YTPP++G +Q+ ++ F+
Sbjct: 121 LETLFVHKVSAGHTPLKNLIKSCAFYWGFTSWIAYYINHPRYTPPSFGNKQITVSAINFL 180
Query: 731 ICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMT 910
IC+ GN I++ L GS P P NPFTW+F LVSCPNYTYE+GSWI F +MT
Sbjct: 181 ICEAGNHFINVMLAHPNHTGSNA-CFPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTVMT 239
Query: 911 QCLPVALFSLVGFTQMTIWAKGQHRSYLKEFRDY 1012
Q LPV +F+L+ QM++WA+ +H++YLK+F Y
Sbjct: 240 QTLPVGIFTLLISIQMSLWAQKKHKNYLKKFNSY 273
>ref|NP_999153.1| 3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Sus scrofa].
Length = 254
Score = 58.2 bits (139), Expect = 8e-09
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +2
Query: 593 PLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHM--A 766
P+ +F+ + G YY+ + P + ++ +L +F+ +IH
Sbjct: 108 PVVFLFRGFVFCMGNGLLQGYYLVYCAEYPAEWYTD-IRFSLGVFLFILGMGINIHSDYI 166
Query: 767 LRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVG 946
LR LR G KIP LF VS N+ E+ WIG+A+ T LP F+
Sbjct: 167 LRQLRKPGEVIYKIPQGG------LFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFS 220
Query: 947 FTQMTIWAKGQHRSYLKEFRDYPPLR 1024
+ + A HR Y+K F DYP R
Sbjct: 221 LCFLGLRAFHHHRFYVKMFEDYPKSR 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,223,592
Number of extensions: 830955
Number of successful extensions: 4048
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4029
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002581
(1107 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 301 4e-79
>Sscrofa_Chr02
|| Length = 162569375
Score = 301 bits (152), Expect = 4e-79
Identities = 172/176 (97%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 921 cagtggccctcttctccctggtgggcttcacccaaatgaccatctgggccaagggccagc 980
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 65190940 cagtggccctcttctccctggtgggcttcacccagatgaccatctgggccaagggcaagc 65190999
Query: 981 accgcagctacctgaaggagttccgagactacccgcccctacgcatgcccatcatcccct 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65191000 accgcagctacctgaaggagttccgagactacccgcccctacgcatgcccatcatcccct 65191059
Query: 1041 tcctgctctgagcggctccccccactcaggcctca-gcaagctgggctctgtcccc 1095
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 65191060 tcctgctctgagcggctccccccactcagg-ctcaggcaagctgggctctgtcccc 65191114
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1 ggggccgtcgcggagccacggttagtctcgcgcggcggtcgtgagcgcgtgagttatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65165884 ggggccgtcgcggagccacggttagtctcgcgcggcggtcgtgagcgcgtgagttatcca 65165825
Query: 61 gtgcggtcccgcgcgcaggtaggcggcagcagcagcagaaatagtagcgccgcctgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65165824 gtgcggtcccgcgcgcaggtaggcggcagcagcagcagaaatagtagcgccgcctgagag 65165765
Query: 121 aaccatgaagcattacgaggt 141
|||||||||||||||||||||
Sbjct: 65165764 aaccatgaagcattacgaggt 65165744
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 391 ggtcttcctgacagagtacgcgggtccccttttcatctatttgctcttctacttccgggt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189520 ggtcttcctgacagagtacgcgggtccccttttcatctatttgctcttctacttccgggt 65189579
Query: 451 gcccttcatttatggccacaaatatgacttcacgtccagtcggcatacggtggtgca 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189580 gcccttcatttatggccacaaatatgacttcacgtccagtcggcatacggtggtgca 65189636
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 288 agggcaagtccctgaaggatgaggacgttctgcagaagctgcctgtgggcaccacggcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189339 agggcaagtccctgaaggatgaggacgttctgcagaagctgcctgtgggcaccacggcca 65189398
Query: 348 cactctacttccgggacctgggggcccagatcagctgggtaacggt 393
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189399 cactctacttccgggacctgggggcccagatcagctgggtaacggt 65189444
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 508 cctcgcctgcatctgccactcattccactacatcaagcgcctgttggagacgctcttcgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189721 cctcgcctgcatctgccactcattccactacatcaagcgcctgttggagacgctcttcgt 65189780
Query: 568 gcatcgcttctcccatggcactatgcccttgcgcaacatcttcaag 613
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189781 gcatcgcttctcccatggcactatgcccttgcgcaacatcttcaag 65189826
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 786 cagggtccaagaccaggaagatcccataccccaccaagaaccccttcacatggcttttcc 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65190364 cagggtccaagaccaggaagatcccataccccaccaagaaccccttcacatggcttttcc 65190423
Query: 846 tgctggtgtcctgccccaactacacatacgaggtg 880
|||||||||||||||||||||||||||||||||||
Sbjct: 65190424 tgctggtgtcctgccccaactacacatacgaggtg 65190458
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 612 agaactgcacctactactggggctttgctgcatggatggcctattacatcaaccaccctc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189931 agaactgcacctactactggggctttgctgcatggatggcctattacatcaaccaccctc 65189990
Query: 672 tctacacacccccaa 686
|||||||||||||||
Sbjct: 65189991 tctacacacccccaa 65190005
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 730 gatctgccagcttggcaacttctccatccacatggccctgcgggacctgcggccagcagg 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65190220 gatctgccagcttggcaacttctccatccacatggccctgcgggacctgcggccagcagg 65190279
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 876 aggtggggtcctggattggctttgccatcatgacacagtgtctcccag 923
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65190810 aggtggggtcctggattggctttgccatcatgacacagtgtctcccag 65190857
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 243 atccgcagtggtaccctgcccgccagtccctccgcctggacccca 287
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65189199 atccgcagtggtaccctgcccgccagtccctccgcctggacccca 65189243
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 687 cctatggagctcagcaggttaaattggcactcgccatctttgtg 730
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65190099 cctatggagctcagcaggttaaattggcactcgccatctttgtg 65190142
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,110,868
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 11
Length of query: 1107
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1086
Effective length of database: 2,808,413,156
Effective search space: 3049936687416
Effective search space used: 3049936687416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)