Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786984.1| isocitrate dehydrogenase [NADP], mitochondrial ... 888 0.0
Alignment gi|NP_851355.2| isocitrate dehydrogenase [NADP] cytoplasmic [Bo... 594 e-170
>ref|NP_786984.1| isocitrate dehydrogenase [NADP], mitochondrial precursor [Bos
taurus].
Length = 452
Score = 888 bits (2294), Expect = 0.0
Identities = 431/452 (95%), Positives = 437/452 (96%)
Frame = +1
Query: 160 MAGYLRVVRSLCRXXXXXXXXXXXXLTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR 339
MAGYLRVVRSLCR LTAPNLQEQPRRHYAD+RIKVAKPVVEMDGDEMTR
Sbjct: 1 MAGYLRVVRSLCRASGSGSAWAPRALTAPNLQEQPRRHYADKRIKVAKPVVEMDGDEMTR 60
Query: 340 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 519
IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE
Sbjct: 61 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 120
Query: 520 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 699
ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK
Sbjct: 121 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 180
Query: 700 ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 879
ATDFVVDRAGTFK+VFTPKDGS K+WEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI
Sbjct: 181 ATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 240
Query: 880 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 1059
QKKWPLYMSTKNTILKAYDGRFKDIFQ IFEKHYKT+FDK+KIWYEHRLIDDMVAQVLKS
Sbjct: 241 QKKWPLYMSTKNTILKAYDGRFKDIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVAQVLKS 300
Query: 1060 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 1239
SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK
Sbjct: 301 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 360
Query: 1240 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 1419
GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH
Sbjct: 361 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 420
Query: 1420 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 1515
GLSNVKLNEHFLNTSDFLDTIKSNLDRALG+Q
Sbjct: 421 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGQQ 452
>ref|NP_851355.2| isocitrate dehydrogenase [NADP] cytoplasmic [Bos taurus].
Length = 414
Score = 594 bits (1532), Expect = e-170
Identities = 286/403 (70%), Positives = 334/403 (82%), Gaps = 1/403 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TP DGS + V+NF +GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK++F+ IWYEHR
Sbjct: 190 EDFAHSSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSEFEAQNIWYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA+ LE+VC+ET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL L +
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLQLKLAQ 411
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,836,638
Number of extensions: 2075976
Number of successful extensions: 8548
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8485
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 504
Effective length of database: 14,107,870
Effective search space: 7110366480
Effective search space used: 7110366480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536192.2| PREDICTED: similar to isocitrate dehydrogenase ... 833 0.0
Alignment gi|XP_536047.2| PREDICTED: similar to Isocitrate dehydrogenase ... 595 e-170
Alignment gi|XP_850187.1| PREDICTED: similar to Isocitrate dehydrogenase ... 595 e-170
Alignment gi|XP_860821.1| PREDICTED: similar to Isocitrate dehydrogenase ... 593 e-169
Alignment gi|XP_860853.1| PREDICTED: similar to Isocitrate dehydrogenase ... 589 e-168
Alignment gi|XP_860792.1| PREDICTED: similar to Isocitrate dehydrogenase ... 434 e-121
>ref|XP_536192.2| PREDICTED: similar to isocitrate dehydrogenase 2 (NADP+),
mitochondrial [Canis familiaris].
Length = 517
Score = 833 bits (2152), Expect = 0.0
Identities = 401/412 (97%), Positives = 409/412 (99%)
Frame = +1
Query: 277 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 456
AD+RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID
Sbjct: 106 ADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 165
Query: 457 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 636
SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR
Sbjct: 166 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 225
Query: 637 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGM 816
LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKI+F+PKDGS AK+WEVYNFP GGVGM
Sbjct: 226 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIIFSPKDGSGAKEWEVYNFPGGGVGM 285
Query: 817 GMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 996
GMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD
Sbjct: 286 GMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 345
Query: 997 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDG 1176
K KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDG
Sbjct: 346 KNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDG 405
Query: 1177 KTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLE 1356
KTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLE
Sbjct: 406 KTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLE 465
Query: 1357 KVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
KVCV+TVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIK+NLD+ALG+
Sbjct: 466 KVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKNNLDKALGQ 517
>ref|XP_536047.2| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 1 [Canis familiaris].
Length = 414
Score = 595 bits (1534), Expect = e-170
Identities = 287/403 (71%), Positives = 333/403 (82%), Gaps = 1/403 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TP DGS + V+NF GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ IWYEHR
Sbjct: 190 EDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA+ LE+VCVET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCVETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL+ L +
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLNIKLAQ 411
>ref|XP_850187.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 2 [Canis familiaris].
Length = 414
Score = 595 bits (1534), Expect = e-170
Identities = 287/403 (71%), Positives = 333/403 (82%), Gaps = 1/403 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TP DGS + V+NF GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ IWYEHR
Sbjct: 190 EDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA+ LE+VCVET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCVETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL+ L +
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLNIKLAQ 411
>ref|XP_860821.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 4 [Canis familiaris].
Length = 415
Score = 593 bits (1530), Expect = e-169
Identities = 286/404 (70%), Positives = 333/404 (82%), Gaps = 2/404 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQW--EVYNFPAGGVGMGMYNTDES 840
IGRHA+GDQY+ATDFVV G +I +TP DGS + +V +F GGV MGMYN D+S
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLIQVLSFKGGGVAMGMYNQDKS 189
Query: 841 ISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEH 1020
I FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ IWYEH
Sbjct: 190 IEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEH 249
Query: 1021 RLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAA 1200
RLIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAA
Sbjct: 250 RLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAA 309
Query: 1201 HGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVE 1380
HGTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA+ LE+VCVET+E
Sbjct: 310 HGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCVETIE 369
Query: 1381 SGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
+G MTKDLA CI GL NV+ ++ +LNT +F+D + NL+ L +
Sbjct: 370 AGFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLNIKLAQ 412
>ref|XP_860853.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 5 [Canis familiaris].
Length = 408
Score = 589 bits (1519), Expect = e-168
Identities = 285/402 (70%), Positives = 330/402 (82%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESIS 846
IGRHA+GDQY+ATDFVV G +I +TP DGS E + GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGS-----EKMTYLGGGVAMGMYNQDKSIE 184
Query: 847 GFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRL 1026
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ IWYEHRL
Sbjct: 185 DFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHRL 244
Query: 1027 IDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 1206
IDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHG
Sbjct: 245 IDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHG 304
Query: 1207 TVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG 1386
TVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA+ LE+VCVET+E+G
Sbjct: 305 TVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCVETIEAG 364
Query: 1387 AMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
MTKDLA CI GL NV+ ++ +LNT +F+D + NL+ L +
Sbjct: 365 FMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLNIKLAQ 405
>ref|XP_860792.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 3 [Canis familiaris].
Length = 299
Score = 434 bits (1117), Expect = e-121
Identities = 207/284 (72%), Positives = 235/284 (82%), Gaps = 1/284 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNF-PAGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TP DGS + V+NF GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ IWYEHR
Sbjct: 190 EDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTS 1155
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTS
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTS 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,467,561
Number of extensions: 2088101
Number of successful extensions: 8840
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8810
Number of HSP's successfully gapped: 6
Length of query: 612
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 503
Effective length of database: 15,240,880
Effective search space: 7666162640
Effective search space used: 7666162640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002159.2| isocitrate dehydrogenase [NADP], mitochondrial ... 878 0.0
Alignment gi|NP_005887.2| isocitrate dehydrogenase [NADP] cytoplasmic [Ho... 588 e-168
>ref|NP_002159.2| isocitrate dehydrogenase [NADP], mitochondrial precursor [Homo
sapiens].
Length = 452
Score = 878 bits (2269), Expect = 0.0
Identities = 426/452 (94%), Positives = 433/452 (95%)
Frame = +1
Query: 160 MAGYLRVVRSLCRXXXXXXXXXXXXLTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR 339
MAGYLRVVRSLCR LTAP QEQPRRHYAD+RIKVAKPVVEMDGDEMTR
Sbjct: 1 MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYADKRIKVAKPVVEMDGDEMTR 60
Query: 340 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 519
IIWQFIKEKLILPHVD+QLKYFDLGLPNRDQT+DQVTIDSALATQKYSVAVKCATITPDE
Sbjct: 61 IIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDE 120
Query: 520 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 699
ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK
Sbjct: 121 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 180
Query: 700 ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 879
ATDFV DRAGTFK+VFTPKDGS K+WEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI
Sbjct: 181 ATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 240
Query: 880 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 1059
QKKWPLYMSTKNTILKAYDGRFKDIFQEIF+KHYKTDFDK KIWYEHRLIDDMVAQVLKS
Sbjct: 241 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKS 300
Query: 1060 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 1239
SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK
Sbjct: 301 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 360
Query: 1240 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 1419
GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ LEKVCVETVESGAMTKDLAGCIH
Sbjct: 361 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIH 420
Query: 1420 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 1515
GLSNVKLNEHFLNT+DFLDTIKSNLDRALGRQ
Sbjct: 421 GLSNVKLNEHFLNTTDFLDTIKSNLDRALGRQ 452
>ref|NP_005887.2| isocitrate dehydrogenase [NADP] cytoplasmic [Homo sapiens].
Length = 414
Score = 588 bits (1515), Expect = e-168
Identities = 283/397 (71%), Positives = 329/397 (82%), Gaps = 1/397 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +K++V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TP DG+ + V+NF GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KIWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+V +ET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 1494
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENL 405
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,937,834
Number of extensions: 2026977
Number of successful extensions: 8569
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8519
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 504
Effective length of database: 14,737,052
Effective search space: 7427474208
Effective search space used: 7427474208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766599.2| isocitrate dehydrogenase [NADP], mitochondrial ... 872 0.0
Alignment gi|NP_001104790.1| isocitrate dehydrogenase [NADP] cytoplasmic ... 587 e-168
Alignment gi|NP_034627.3| isocitrate dehydrogenase [NADP] cytoplasmic [Mu... 587 e-168
>ref|NP_766599.2| isocitrate dehydrogenase [NADP], mitochondrial precursor [Mus
musculus].
Length = 452
Score = 872 bits (2254), Expect = 0.0
Identities = 422/452 (93%), Positives = 433/452 (95%)
Frame = +1
Query: 160 MAGYLRVVRSLCRXXXXXXXXXXXXLTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR 339
MAGYLR V SLCR LT P+ EQPRRHYA++RIKV KPVVEMDGDEMTR
Sbjct: 1 MAGYLRAVSSLCRASGSARTWAPAALTVPSWPEQPRRHYAEKRIKVEKPVVEMDGDEMTR 60
Query: 340 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 519
IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE
Sbjct: 61 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 120
Query: 520 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 699
ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK
Sbjct: 121 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 180
Query: 700 ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 879
ATDFVVDRAGTFK+VFTPKDGSSAK+WEVYNFPAGGVGMGMYNTDESISGFAHSCFQY+I
Sbjct: 181 ATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYSI 240
Query: 880 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 1059
QKKWPLY+STKNTILKAYDGRFKDIFQEIF+KHYKTDFDK KIWYEHRLIDDMVAQVLKS
Sbjct: 241 QKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKS 300
Query: 1060 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 1239
SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK
Sbjct: 301 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 360
Query: 1240 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 1419
GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCV+TVESGAMTKDLAGCIH
Sbjct: 361 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIH 420
Query: 1420 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 1515
GLSNVKLNEHFLNT+DFLDTIKSNLDRALG+Q
Sbjct: 421 GLSNVKLNEHFLNTTDFLDTIKSNLDRALGKQ 452
>ref|NP_001104790.1| isocitrate dehydrogenase [NADP] cytoplasmic [Mus musculus].
Length = 414
Score = 587 bits (1514), Expect = e-168
Identities = 284/403 (70%), Positives = 332/403 (82%), Gaps = 1/403 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLILP+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TPKDG+ + V++F GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KI YEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQKICYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAW+RGL HR KLD N +L FA+ LE VC+ET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL L +
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLKAKLAQ 411
>ref|NP_034627.3| isocitrate dehydrogenase [NADP] cytoplasmic [Mus musculus].
Length = 414
Score = 587 bits (1514), Expect = e-168
Identities = 284/403 (70%), Positives = 332/403 (82%), Gaps = 1/403 (0%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLILP+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 843
IGRHA+GDQY+ATDFVV G +I +TPKDG+ + V++F GGV MGMYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSI 189
Query: 844 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 1023
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KI YEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQKICYEHR 249
Query: 1024 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 1203
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 309
Query: 1204 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 1383
GTVTRHYR +QKG+ TSTNPIASIFAW+RGL HR KLD N +L FA+ LE VC+ET+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEA 369
Query: 1384 GAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 1512
G MTKDLA CI GL NV+ ++ +LNT +F+D + NL L +
Sbjct: 370 GFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENLKAKLAQ 411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,991,270
Number of extensions: 1683632
Number of successful extensions: 6779
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6742
Number of HSP's successfully gapped: 3
Length of query: 612
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 505
Effective length of database: 12,403,707
Effective search space: 6263872035
Effective search space used: 6263872035
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157479.1| isocitrate dehydrogenase [NADP], mitochondri... 899 0.0
Alignment gi|XP_003356713.1| PREDICTED: isocitrate dehydrogenase [NADP], ... 458 e-129
Alignment gi|XP_003359677.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 372 e-103
Alignment gi|XP_003356711.1| PREDICTED: isocitrate dehydrogenase [NADP], ... 253 3e-67
Alignment gi|XP_003133673.2| PREDICTED: isocitrate dehydrogenase [NADP] c... 243 2e-64
Alignment gi|XP_003359676.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 211 8e-55
Alignment gi|XP_003133666.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 169 5e-42
>ref|NP_001157479.1| isocitrate dehydrogenase [NADP], mitochondrial [Sus scrofa].
Length = 452
Score = 899 bits (2322), Expect = 0.0
Identities = 439/452 (97%), Positives = 439/452 (97%)
Frame = +1
Query: 160 MAGYLRVVRSLCRXXXXXXXXXXXXLTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR 339
MAGYLRVVRSLCR LTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR
Sbjct: 1 MAGYLRVVRSLCRASGSGPAWAPAALTAPNLQEQPRRHYADQRIKVAKPVVEMDGDEMTR 60
Query: 340 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 519
IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE
Sbjct: 61 IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE 120
Query: 520 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYK 699
ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNI RLVPGWTKPITIGRHAHGDQYK
Sbjct: 121 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNISRLVPGWTKPITIGRHAHGDQYK 180
Query: 700 ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 879
ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI
Sbjct: 181 ATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 240
Query: 880 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 1059
QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS
Sbjct: 241 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS 300
Query: 1060 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 1239
SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK
Sbjct: 301 SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 360
Query: 1240 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 1419
GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH
Sbjct: 361 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIH 420
Query: 1420 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 1515
GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ
Sbjct: 421 GLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 452
>ref|XP_003356713.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Sus
scrofa].
Length = 341
Score = 458 bits (1179), Expect = e-129
Identities = 237/320 (74%), Positives = 247/320 (77%), Gaps = 37/320 (11%)
Frame = +1
Query: 277 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 456
ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKL D L+ + + R +T +
Sbjct: 18 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKL--QRADFFLETYVV--ERRPETPHAICTG 73
Query: 457 SALATQKYSVAVKCATI--------TPDEARVE--------------------------- 531
+ V A++ +EA +
Sbjct: 74 QPRLVVFLPICVALASVGVTSHIEEEKEEADADLTPSGCVLAWGSHAAGRGLQWGCFISV 133
Query: 532 --EFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKAT 705
EFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKAT
Sbjct: 134 LLEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKAT 193
Query: 706 DFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK 885
DFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK
Sbjct: 194 DFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK 253
Query: 886 KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSG 1065
KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSG
Sbjct: 254 KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSG 313
Query: 1066 GFVWACKNYDGDVQSDILAQ 1125
GFVWACKNYDGDVQSDILAQ
Sbjct: 314 GFVWACKNYDGDVQSDILAQ 333
>ref|XP_003359677.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 402
Score = 372 bits (955), Expect = e-103
Identities = 175/248 (70%), Positives = 205/248 (82%), Gaps = 1/248 (0%)
Frame = +1
Query: 691 QYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESISGFAHSCF 867
+Y+ATDFVV G +I +TP+DGS + V++F GGV MGMYN D+SI FAHS F
Sbjct: 19 KYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSIEDFAHSSF 78
Query: 868 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 1047
Q A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KIWYEHRLIDDMVAQ
Sbjct: 79 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 138
Query: 1048 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 1227
+KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR
Sbjct: 139 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYR 198
Query: 1228 EHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLA 1407
+QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC+ET+E+G MTKDLA
Sbjct: 199 MYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEAGFMTKDLA 258
Query: 1408 GCIHGLSN 1431
CI GL N
Sbjct: 259 ACIKGLPN 266
>ref|XP_003356711.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Sus
scrofa].
Length = 123
Score = 253 bits (645), Expect = 3e-67
Identities = 123/123 (100%), Positives = 123/123 (100%)
Frame = +1
Query: 1147 MTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQ 1326
MTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQ
Sbjct: 1 MTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQ 60
Query: 1327 DLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 1506
DLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL
Sbjct: 61 DLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 120
Query: 1507 GRQ 1515
GRQ
Sbjct: 121 GRQ 123
>ref|XP_003133673.2| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic, partial
[Sus scrofa].
Length = 187
Score = 243 bits (621), Expect = 2e-64
Identities = 117/163 (71%), Positives = 135/163 (82%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNF 795
IGRHA+GDQY+ATDFVV G +I +TP+DGS + V++F
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDF 172
>ref|XP_003359676.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 150
Score = 211 bits (538), Expect = 8e-55
Identities = 101/129 (78%), Positives = 112/129 (86%)
Frame = +1
Query: 307 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 486
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 69
Query: 487 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 666
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 667 IGRHAHGDQ 693
IGRHA+GDQ
Sbjct: 130 IGRHAYGDQ 138
>ref|XP_003133666.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 125
Score = 169 bits (428), Expect = 5e-42
Identities = 80/117 (68%), Positives = 98/117 (83%)
Frame = +1
Query: 1144 LMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGN 1323
+MTSVL+CPDGKT+EAEAAHGTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N
Sbjct: 1 MMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSN 60
Query: 1324 QDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 1494
++L FA LE+VC+ET+E+G MTKDLA CI GL NV+ ++ +LNT +F+D + NL
Sbjct: 61 KELSIFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSD-YLNTFEFMDKLGENL 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,898,392
Number of extensions: 1408151
Number of successful extensions: 5609
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5584
Number of HSP's successfully gapped: 8
Length of query: 612
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 507
Effective length of database: 8,729,747
Effective search space: 4425981729
Effective search space used: 4425981729
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002585
(1838 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 733 0.0
Sscrofa_Chr15 86 8e-14
>Sscrofa_Chr07
|| Length = 134764511
Score = 733 bits (370), Expect = 0.0
Identities = 384/391 (98%)
Strand = Plus / Minus
Query: 1431 tgtgaagctgaacgagcacttcctgaacacctcggacttcctggacaccatcaaaagcaa 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60539726 tgtgaagctgaacgagcacttcctgaacacctcggacttcctggacaccatcaaaagcaa 60539667
Query: 1491 cctggacagagctctgggccggcagtagcggggtgggagcgctgtgggctgccctggtgg 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60539666 cctggacagagctctgggccggcagtagcggggtgggagcgctgtgggctgccctggtgg 60539607
Query: 1551 ccgggccggagcccagcgggtggccgcagttgcccacctccctccagcaccacttggcga 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60539606 ccgggccggagcccagcgggtggccgcagttgcccacctccctccagcaccacttggcga 60539547
Query: 1611 gggtgagcctctcagcccctcttaggaggcctctccaggggctannnnnnnataagcaag 1670
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 60539546 gggtgagcctctcagcccctcttaggaggcctctccaggggctatttttttataagcaag 60539487
Query: 1671 atgtttttaaagtatctgtgtgtttcccctcatggtgacatgaggcaggaacagagtgtt 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60539486 atgtttttaaagtatctgtgtgtttcccctcatggtgacatgaggcaggaacagagtgtt 60539427
Query: 1731 ttacctcagccagtgcgtggttctgcgtactgtaatttatattgtcctcggaacacatgg 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60539426 ttacctcagccagtgcgtggttctgcgtactgtaatttatattgtcctcggaacacatgg 60539367
Query: 1791 tgccatgtttagctactaaaaagctcttcac 1821
|||||||||||||||||||||||||||||||
Sbjct: 60539366 tgccatgtttagctactaaaaagctcttcac 60539336
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 365 agctcatcctgccccacgtggatgtccagctcaagtattttgacctggggctcccaaacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60546815 agctcatcctgccccacgtggatgtccagctcaagtattttgacctggggctcccaaacc 60546756
Query: 425 gggaccagaccaacgatcaggtcaccatcgactccgccttggccacccagaagtacagcg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60546755 gggaccagaccaacgatcaggtcaccatcgactccgccttggccacccagaagtacagcg 60546696
Query: 485 tggctgtcaagtgtgccaccatcacccccgatgaggcccgtgtggaag 532
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60546695 tggctgtcaagtgtgccaccatcacccccgatgaggcccgtgtggaag 60546648
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 531 agagttcaagctgaagaagatgtggaagagtcccaatggaaccatccggaacatcctcgg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60544950 agagttcaagctgaagaagatgtggaagagtcccaatggaaccatccggaacatcctcgg 60544891
Query: 591 ggggactgttttccgggagcccatcatctgcaagaacatcccacgccttgtgcctggctg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60544890 ggggactgttttccgggagcccatcatctgcaagaacatcccacgccttgtgcctggctg 60544831
Query: 651 gaccaagcccatcaccatcggcaggcacgctcacggcgaccag 693
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60544830 gaccaagcccatcaccatcggcaggcacgctcacggcgaccag 60544788
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 975 gcactataagaccgatttcgacaagtataagatctggtatgagcaccggctcattgatga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60542919 gcactataagaccgatttcgacaagtataagatctggtatgagcaccggctcattgatga 60542860
Query: 1035 catggtggctcaggtcctcaagtcttcgggcggcttcgtgtgggcctgcaagaactacga 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60542859 catggtggctcaggtcctcaagtcttcgggcggcttcgtgtgggcctgcaagaactacga 60542800
Query: 1095 tggagacgtgcagtcggacatcctggcccaggg 1127
|||||||||||||||||||||||||||||||||
Sbjct: 60542799 tggagacgtgcagtcggacatcctggcccaggg 60542767
Score = 291 bits (147), Expect = 7e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 691 cagtacaaggccacagactttgtggttgaccgggcgggcacgttcaagattgtcttcacc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60544707 cagtacaaggccacagactttgtggttgaccgggcgggcacgttcaagattgtcttcacc 60544648
Query: 751 ccaaaggacggcagcagtgccaagcagtgggaagtgtacaacttccccgcaggcggcgtg 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60544647 ccaaaggacggcagcagtgccaagcagtgggaagtgtacaacttccccgcaggcggcgtg 60544588
Query: 811 ggcatgggcatgtacaacacagatgag 837
|||||||||||||||||||||||||||
Sbjct: 60544587 ggcatgggcatgtacaacacagatgag 60544561
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 836 agtccatctcagggttcgcgcacagctgcttccagtacgccatccagaagaagtggccgc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60543230 agtccatctcagggttcgcgcacagctgcttccagtacgccatccagaagaagtggccgc 60543171
Query: 896 tctacatgagcaccaagaataccattctgaaagcctacgacgggcgcttcaaagacatct 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60543170 tctacatgagcaccaagaataccattctgaaagcctacgacgggcgcttcaaagacatct 60543111
Query: 956 tccaggagatctttgagaag 975
||||||||||||||||||||
Sbjct: 60543110 tccaggagatctttgagaag 60543091
Score = 228 bits (115), Expect = 9e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 1126 ggctttggctcccttggcctgatgacgtctgtgctggtctgcccggatggcaagaccatc 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60540987 ggctttggctcccttggcctgatgacgtctgtgctggtctgcccggatggcaagaccatc 60540928
Query: 1186 gaagctgaggctgctcatgggacagtcacccgccactatagggagcaccagaagg 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60540927 gaagctgaggctgctcatgggacagtcacccgccactatagggagcaccagaagg 60540873
Score = 228 bits (115), Expect = 9e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 160 atggctggttacctgcgagtcgtacgctcgctctgccgagcttccggctccgggccggcc 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60604772 atggctggttacctgcgagtcgtacgctcgctctgccgagcttccggctccgggccggcc 60604831
Query: 220 tgggcgccggcagccttgacagcccccaacttgcaagagcagccgcggcgccact 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60604832 tgggcgccggcagccttgacagcccccaacttgcaagagcagccgcggcgccact 60604886
Score = 202 bits (102), Expect = 5e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1238 agggccggcctaccagcaccaaccccatcgccagcatctttgcctggacgcgtggcctgg 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60540439 agggccggcctaccagcaccaaccccatcgccagcatctttgcctggacgcgtggcctgg 60540380
Query: 1298 agcaccgggggaagttggacggaaaccaagacctgatcaggt 1339
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60540379 agcaccgggggaagttggacggaaaccaagacctgatcaggt 60540338
Score = 202 bits (102), Expect = 5e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 cggcccgcgcgacccgcgcctggcaggcctcggcagcccgccaccagccagccgggagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60604613 cggcccgcgcgacccgcgcctggcaggcctcggcagcccgccaccagccagccgggagca 60604672
Query: 61 gcggccggcgctcggatctcgctcgcccctgttcgtccgtcc 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60604673 gcggccggcgctcggatctcgctcgcccctgttcgtccgtcc 60604714
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1335 caggtttgctcagactctggagaaggtgtgtgttgagacagtagagagcggagccatgac 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60540256 caggtttgctcagactctggagaaggtgtgtgttgagacagtagagagcggagccatgac 60540197
Query: 1395 caaggacctggcgggctgtatccatggcctcagcaa 1430
||||||||||||||||||||||||||||||||||||
Sbjct: 60540196 caaggacctggcgggctgtatccatggcctcagcaa 60540161
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 275 atgccgaccagaggatcaaggtggcgaagccggtggtggagatggacggtgatgagatga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60549480 atgccgaccagaggatcaaggtggcgaagccggtggtggagatggacggtgatgagatga 60549421
Query: 335 cccgaatcatctggcagttcatcaaggagaag 366
||||||||||||||||||||||||||||||||
Sbjct: 60549420 cccgaatcatctggcagttcatcaaggagaag 60549389
Score = 174 bits (88), Expect = 1e-40
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 275 atgccgaccagaggatcaaggtggcgaagccggtggtggagatggacggtgatgagatga 334
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 60584539 atgccgaccagaggatcaaggtggcgaatccggtggtggagatggacggtgatgagatga 60584480
Query: 335 cccgaatcatctggcagttcatcaaggagaag 366
||||||||||||||||||||||||||||||||
Sbjct: 60584479 cccgaatcatctggcagttcatcaaggagaag 60584448
>Sscrofa_Chr15
|| Length = 157681621
Score = 85.7 bits (43), Expect = 8e-14
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 1003 aagatctggtatgagcaccggctcattgatgacatggtggctcaggtcctcaagtcttcg 1062
|||||||||||||||||||||||||| |||||||||||||| || | | || || |
Sbjct: 122869285 aagatctggtatgagcaccggctcatcgatgacatggtggcccaagctatgaaatcggag 122869226
Query: 1063 ggcggcttcgtgtgggcctgcaagaactacgatggagacgtgcagtcggac 1113
||||||||| | |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 122869225 ggcggcttcatctgggcctgtaaaaactatgatggtgacgtgcagtcggac 122869175
Score = 61.9 bits (31), Expect = 1e-06
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 489 tgtcaagtgtgccaccatcacccccgatgag 519
|||||||||||||||||||||||||||||||
Sbjct: 122877122 tgtcaagtgtgccaccatcacccccgatgag 122877092
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,895,424
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 15
Length of query: 1838
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1816
Effective length of database: 2,808,408,574
Effective search space: 5100069970384
Effective search space used: 5100069970384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)