Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029679.1| transmembrane protein 9B [Bos taurus]. 296 2e-80
Alignment gi|NP_001098961.1| transmembrane protein 9 [Bos taurus]. 174 2e-43
>ref|NP_001029679.1| transmembrane protein 9B [Bos taurus].
Length = 198
Score = 296 bits (759), Expect = 2e-80
Identities = 144/167 (86%), Positives = 147/167 (88%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
DAAKNSEDVRCKCICPPYK+NSG+IYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC
Sbjct: 32 DAAKNSEDVRCKCICPPYKDNSGHIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGHSQL+QSDDDVGDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLIQSDDDVGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|NP_001098961.1| transmembrane protein 9 [Bos taurus].
Length = 181
Score = 174 bits (440), Expect = 2e-43
Identities = 91/167 (54%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CECK
Sbjct: 20 ANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECK 79
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERS+ TIKV V+P++ R+ +++ + ++++ D +
Sbjct: 80 YEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTERLHNEEESEDARSA 138
Query: 560 ANAHDVLARSRSRAN-VLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A A SRAN VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 139 AAA----AAFGSRANTVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 181
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,268,158
Number of extensions: 1373265
Number of successful extensions: 5487
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5475
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863436.1| PREDICTED: similar to R12C12.6 isoform 2 [Canis... 294 1e-79
Alignment gi|XP_534047.2| PREDICTED: similar to R12C12.6 isoform 1 [Canis... 294 1e-79
Alignment gi|XP_849742.1| PREDICTED: similar to Transmembrane protein 9 p... 169 6e-42
>ref|XP_863436.1| PREDICTED: similar to R12C12.6 isoform 2 [Canis familiaris].
Length = 198
Score = 294 bits (753), Expect = 1e-79
Identities = 143/167 (85%), Positives = 146/167 (87%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
DAAKN EDVRCKCICPPYK+NSG+IYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC
Sbjct: 32 DAAKNFEDVRCKCICPPYKDNSGHIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGHSQL+QSDDDVGDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLIQSDDDVGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|XP_534047.2| PREDICTED: similar to R12C12.6 isoform 1 [Canis familiaris].
Length = 198
Score = 294 bits (753), Expect = 1e-79
Identities = 143/167 (85%), Positives = 146/167 (87%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
DAAKN EDVRCKCICPPYK+NSG+IYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC
Sbjct: 32 DAAKNFEDVRCKCICPPYKDNSGHIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGHSQL+QSDDDVGDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLIQSDDDVGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|XP_849742.1| PREDICTED: similar to Transmembrane protein 9 precursor (Dermal
papilla derived protein 4) [Canis familiaris].
Length = 185
Score = 169 bits (428), Expect = 6e-42
Identities = 87/165 (52%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Frame = +2
Query: 206 KNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECKYE 385
++SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CECKYE
Sbjct: 25 QSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECKYE 84
Query: 386 ERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPFAN 565
ERS+ TIKV V+P++ R+ +++ ++++++ D + A
Sbjct: 85 ERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLRNEEENEDARSMAA 143
Query: 566 AHDVLARSRSRAN-VLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A + RAN VL +VE AQQRWKLQVQEQRK VFDRH +LS
Sbjct: 144 AASL---GGPRANTVLERVEGAQQRWKLQVQEQRKPVFDRHKMLS 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,477,225
Number of extensions: 1411775
Number of successful extensions: 5539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5529
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065695.1| transmembrane protein 9B precursor [Homo sapien... 292 4e-79
Alignment gi|NP_057540.1| transmembrane protein 9 precursor [Homo sapiens]. 173 4e-43
>ref|NP_065695.1| transmembrane protein 9B precursor [Homo sapiens].
Length = 198
Score = 292 bits (748), Expect = 4e-79
Identities = 141/167 (84%), Positives = 146/167 (87%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
DAAKN EDVRCKCICPPYKENSG+IYNKNISQKDCDCLHVV+PMPVRGPDVEAYCLRCEC
Sbjct: 32 DAAKNFEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGH+QL+QSDDD+GDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHAQLIQSDDDIGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|NP_057540.1| transmembrane protein 9 precursor [Homo sapiens].
Length = 183
Score = 173 bits (438), Expect = 4e-43
Identities = 87/167 (52%), Positives = 115/167 (68%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
+A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CEC
Sbjct: 19 EANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCEC 78
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
+YEERS+ TIKV V+P++ R+ +++ + ++++ D +
Sbjct: 79 RYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLHNEEENEDARS 137
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A L R+ VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 138 MAAAAASLGGPRAN-TVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,490,869
Number of extensions: 1391492
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5415
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064434.1| transmembrane protein 9B precursor [Mus musculu... 290 2e-78
Alignment gi|NP_001153618.1| transmembrane protein 9 precursor [Mus muscu... 172 6e-43
Alignment gi|NP_001153617.1| transmembrane protein 9 precursor [Mus muscu... 172 6e-43
Alignment gi|NP_079715.1| transmembrane protein 9 precursor [Mus musculus]. 172 6e-43
>ref|NP_064434.1| transmembrane protein 9B precursor [Mus musculus].
Length = 199
Score = 290 bits (742), Expect = 2e-78
Identities = 141/166 (84%), Positives = 144/166 (86%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
AAKN EDVRCKCICPPYKEN G+IYNKNISQKDCDCLHVV+PMPVRGPDVEAYCLRCECK
Sbjct: 34 AAKNFEDVRCKCICPPYKENPGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECK 93
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERSSVTIKVT VEPILKRRLFGHSQL+QSDDDVGDHQPF
Sbjct: 94 YEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLLQSDDDVGDHQPF 153
Query: 560 ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 154 ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 199
>ref|NP_001153618.1| transmembrane protein 9 precursor [Mus musculus].
Length = 183
Score = 172 bits (436), Expect = 6e-43
Identities = 86/166 (51%), Positives = 114/166 (68%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CEC+
Sbjct: 20 ANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECR 79
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERS+ TIKV V+P++ R+ +++ + ++++ D +
Sbjct: 80 YEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLHNEEENEDARTM 138
Query: 560 ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A + R+ VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 139 ATAAASIGGPRAN-TVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 183
>ref|NP_001153617.1| transmembrane protein 9 precursor [Mus musculus].
Length = 183
Score = 172 bits (436), Expect = 6e-43
Identities = 86/166 (51%), Positives = 114/166 (68%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CEC+
Sbjct: 20 ANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECR 79
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERS+ TIKV V+P++ R+ +++ + ++++ D +
Sbjct: 80 YEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLHNEEENEDARTM 138
Query: 560 ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A + R+ VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 139 ATAAASIGGPRAN-TVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 183
>ref|NP_079715.1| transmembrane protein 9 precursor [Mus musculus].
Length = 183
Score = 172 bits (436), Expect = 6e-43
Identities = 86/166 (51%), Positives = 114/166 (68%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CEC+
Sbjct: 20 ANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECR 79
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERS+ TIKV V+P++ R+ +++ + ++++ D +
Sbjct: 80 YEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLHNEEENEDARTM 138
Query: 560 ANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A + R+ VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 139 ATAAASIGGPRAN-TVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,686,561
Number of extensions: 1172011
Number of successful extensions: 4368
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4361
Number of HSP's successfully gapped: 4
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357160.1| PREDICTED: transmembrane protein 9B-like iso... 299 2e-81
Alignment gi|XP_003129430.1| PREDICTED: transmembrane protein 9B-like iso... 299 2e-81
Alignment gi|XP_003357714.1| PREDICTED: transmembrane protein 9-like [Sus... 171 7e-43
>ref|XP_003357160.1| PREDICTED: transmembrane protein 9B-like isoform 2 [Sus scrofa].
Length = 198
Score = 299 bits (766), Expect = 2e-81
Identities = 146/167 (87%), Positives = 147/167 (88%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
+AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC
Sbjct: 32 NAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGHSQLMQSDDDVGDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLMQSDDDVGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|XP_003129430.1| PREDICTED: transmembrane protein 9B-like isoform 1 [Sus scrofa].
Length = 198
Score = 299 bits (766), Expect = 2e-81
Identities = 146/167 (87%), Positives = 147/167 (88%)
Frame = +2
Query: 197 DAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 376
+AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC
Sbjct: 32 NAAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCEC 91
Query: 377 KYEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQP 556
KYEERSSVTIKVT VEPILKRRLFGHSQLMQSDDDVGDHQP
Sbjct: 92 KYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLMQSDDDVGDHQP 151
Query: 557 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
Sbjct: 152 FANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>ref|XP_003357714.1| PREDICTED: transmembrane protein 9-like [Sus scrofa].
Length = 181
Score = 171 bits (434), Expect = 7e-43
Identities = 89/167 (53%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Frame = +2
Query: 200 AAKNSEDVRCKCICPPYKENSGYIYNKNISQKDCDCLHVVDPMPVRGPDVEAYCLRCECK 379
A K+SED+RCKCICPPY+ SG+IYN+N+SQKDC+CLHVV+PMPV G DVEAYCL CECK
Sbjct: 20 ANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECK 79
Query: 380 YEERSSVTIKVTXXXXXXXXXXXXXXXXXXXXVEPILKRRLFGHSQLMQSDDDVGDHQPF 559
YEERS+ TIK+ V+P++ R+ +++ + ++++ D +
Sbjct: 80 YEERSTTTIKIIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTERLHNEEENEDARSV 138
Query: 560 ANAHDVLARSRSRAN-VLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 697
A A A RAN VL +VE AQQRWKLQVQEQRK+VFDRH +LS
Sbjct: 139 AAA----ASFGPRANTVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,401,827
Number of extensions: 885174
Number of successful extensions: 3549
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3538
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002586
(1389 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1653 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1653 bits (834), Expect = 0.0
Identities = 843/846 (99%)
Strand = Plus / Plus
Query: 544 ggatcaccagccttttgcaaatgcccacgacgtgctggcccgctcccgcagccgagccaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578427 ggatcaccagccttttgcaaatgcccacgacgtgctggcccgctcccgcagccgagccaa 578486
Query: 604 cgtgctgaacaaggtggagtacgcccagcagcgctggaagcttcaggttcaagagcagcg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578487 cgtgctgaacaaggtggagtacgcccagcagcgctggaagcttcaggttcaagagcagcg 578546
Query: 664 aaaatccgtctttgaccgtcacgttgtcctcagctaagtgggaaccgcgttcaaggcgac 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578547 aaaatccgtctttgaccgtcacgttgtcctcagctaagtgggaaccgcgttcaaggcgac 578606
Query: 724 tggaagaaatgaggcagacggtggggaaagctgactgtttcccgggctttggttttcata 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578607 tggaagaaatgaggcagacggtggggaaagctgactgtttcccgggctttggttttcata 578666
Query: 784 ccctgttgatttcaccagctcttgctggaaaattcaaaactggaaacaaaaccgtgcgtg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578667 ccctgttgatttcaccagctcttgctggaaaattcaaaactggaaacaaaaccgtgcgtg 578726
Query: 844 gtcgtttcttttctcgttcatgtatcactggagacatctgaaaagcacacacctcagaca 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578727 gtcgtttcttttctcgttcatgtatcactggagacatctgaaaagcacacacctcagaca 578786
Query: 904 gagtcggccaccaggcctttcccatccgcgactctttctgataagtctgcctgcagatca 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578787 gagtcggccaccaggcctttcccatccgcgactctttctgataagtctgcctgcagatca 578846
Query: 964 tcttgacgtccttcacctggagaaagcaccctctttgaccacaaagttttaacttggttt 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578847 tcttgacgtccttcacctggagaaagcaccctctttgaccacaaagttttaacttggttt 578906
Query: 1024 tcaagataattttcaggcggagtttctgcgcggtgtcttttggtttggtttttggcaggg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578907 tcaagataattttcaggcggagtttctgcgcggtgtcttttggtttggtttttggcaggg 578966
Query: 1084 gagggaggggtgcgtgggacatgctgaccgtaacttttctcaagtcgctttactgaacaa 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578967 gagggaggggtgcgtgggacatgctgaccgtaacttttctcaagtcgctttactgaacaa 579026
Query: 1144 acttttgtacgtagacgttgcctttgtttccaagtttcgcctgcatctcgcggcggagcg 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579027 acttttgtacgtagacgttgcctttgtttccaagtttcgcctgcatctcgcggcggagcg 579086
Query: 1204 agcctgctccgagccccgactcacccgtcggagttgtgcgctgtgttagctggacatctg 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579087 agcctgctccgagccccgactcacccgtcggagttgtgcgctgtgttagctggacatctg 579146
Query: 1264 gttggctggggctgcacctcatgctgaactggatctgaaatgcctgggtgcttttcccaa 1323
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 579147 gttggctggggctgcacctcatgctgaactggatctgaaatgcctggtggcttttcgcaa 579206
Query: 1324 gatgcagattttctttatactgcggtgtctgatgcaatgcatcctggaacaaactggcca 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579207 gatgcagattttctttatactgcggtgtctgatgcaatgcatcctggaacaaactggcca 579266
Query: 1384 tctgct 1389
||||||
Sbjct: 579267 tctgct 579272
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 408 aggtcaccattataatttacctctccattctgggccttctgctcctgtacatggtgtatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573336 aggtcaccattataatttacctctccattctgggccttctgctcctgtacatggtgtatc 573395
Query: 468 ttactctggtggagcccatactgaagaggcgtctgtttggccactctcagctgatgcaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573396 ttactctggtggagcccatactgaagaggcgtctgtttggccactctcagctgatgcaga 573455
Query: 528 gcgacgacgacgttgggg 545
||||||||||||||||||
Sbjct: 573456 gcgacgacgacgttgggg 573473
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 300 gtgactgccttcatgttgtggatcccatgcctgtgcgggggccagacgtggaagcatact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571371 gtgactgccttcatgttgtggatcccatgcctgtgcgggggccagacgtggaagcatact 571430
Query: 360 gtctacgctgcgagtgcaagtacgaggaaagaagctccgttaccatcaaggt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571431 gtctacgctgcgagtgcaagtacgaggaaagaagctccgttaccatcaaggt 571482
Score = 178 bits (90), Expect = 5e-42
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 207 agaactctgaagatgtccgatgcaaatgtatctgtcctccctataaagagaattctggtt 266
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567503 agaactccgaagatgtccgatgcaaatgtatctgtcctccctataaagagaattctggtt 567562
Query: 267 atatttataataagaacatatcccagaaggactg 300
||||||||||||||||||||||||||||||||||
Sbjct: 567563 atatttataataagaacatatcccagaaggactg 567596
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,400,378
Number of extensions: 343
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 4
Length of query: 1389
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1368
Effective length of database: 2,808,413,156
Effective search space: 3841909197408
Effective search space used: 3841909197408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)