Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus]. 314 1e-85
Alignment gi|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus]. 278 8e-75
Alignment gi|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus]. 231 1e-60
Alignment gi|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus]. 144 1e-34
Alignment gi|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus]. 114 1e-25
Alignment gi|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus]. 111 1e-24
Alignment gi|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus]. 108 9e-24
Alignment gi|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin as... 100 2e-21
>ref|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus].
Length = 157
Score = 314 bits (804), Expect = 1e-85
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 605
DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
Sbjct: 121 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 157
>ref|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus].
Length = 160
Score = 278 bits (710), Expect = 8e-75
Identities = 137/159 (86%), Positives = 150/159 (94%), Gaps = 3/159 (1%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 495 DVQDTSKKSVLKAIEQADLLQE---EDESPRSVLEEMGL 602
+VQ+TSKK+VLKAIEQADLLQE E E+PRSVLEE+GL
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKEAETPRSVLEEIGL 159
>ref|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus].
Length = 154
Score = 231 bits (588), Expect = 1e-60
Identities = 104/146 (71%), Positives = 131/146 (89%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+ F+LLFSRQGKLRLQKWY DKERKK+ RE++Q++L+R + SF++W++LK+VYK
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKELKLVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCA+E QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF++G
Sbjct: 61 RYASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDE 569
G++Q+TSKKS +KAIE +D+LQE E
Sbjct: 121 GEIQETSKKSAVKAIEDSDMLQETME 146
>ref|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus].
Length = 142
Score = 144 bits (364), Expect = 1e-34
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>ref|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus].
Length = 144
Score = 114 bits (286), Expect = 1e-25
Identities = 50/143 (34%), Positives = 91/143 (63%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + +
Sbjct: 121 GCIVETNRARILAPLLILDKMSD 143
>ref|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus].
Length = 193
Score = 111 bits (278), Expect = 1e-24
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSE 151
>ref|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus].
Length = 193
Score = 108 bits (270), Expect = 9e-24
Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 151
>ref|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin associated complex)
family member (aps-2)-like [Bos taurus].
Length = 109
Score = 100 bits (249), Expect = 2e-21
Identities = 40/85 (47%), Positives = 64/85 (75%)
Frame = +3
Query: 282 EWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKA 461
++R+ K++Y+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K
Sbjct: 18 QFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKV 77
Query: 462 YFILDEFLMGGDVQDTSKKSVLKAI 536
Y ++DE + G++++TS+ VLK +
Sbjct: 78 YTVVDEMFLAGEIRETSQTKVLKQL 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,449,380
Number of extensions: 1361979
Number of successful extensions: 6694
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6621
Number of HSP's successfully gapped: 8
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854230.1| PREDICTED: similar to Adapter-related protein c... 278 9e-75
Alignment gi|XP_536088.2| PREDICTED: similar to adaptor-related protein c... 229 4e-60
Alignment gi|XP_533634.1| PREDICTED: similar to Clathrin coat assembly pr... 144 1e-34
Alignment gi|XP_861120.1| PREDICTED: similar to Adapter-related protein c... 116 4e-26
Alignment gi|XP_850275.1| PREDICTED: similar to Adapter-related protein c... 116 4e-26
Alignment gi|XP_536191.2| PREDICTED: similar to Adapter-related protein c... 111 1e-24
Alignment gi|XP_858735.1| PREDICTED: similar to Adapter-related protein c... 109 4e-24
Alignment gi|XP_537405.1| PREDICTED: similar to Adapter-related protein c... 105 8e-23
Alignment gi|XP_865231.1| PREDICTED: similar to adaptor-related protein c... 83 6e-16
Alignment gi|XP_849444.1| PREDICTED: similar to Adapter-related protein c... 67 2e-11
>ref|XP_854230.1| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B
subunit (Sigma-adaptin 1B) (Adaptor protein complex AP-1
sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin
sigma-1B subunit) (Clathrin assembly protein complex 1
sigma-1B small chain) (Sigma 1B s... [Canis familiaris].
Length = 349
Score = 278 bits (710), Expect = 9e-75
Identities = 137/159 (86%), Positives = 150/159 (94%), Gaps = 3/159 (1%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 190 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 249
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 250 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 309
Query: 495 DVQDTSKKSVLKAIEQADLLQE---EDESPRSVLEEMGL 602
+VQ+TSKK+VLKAIEQADLLQE E E+PRSVLEE+GL
Sbjct: 310 EVQETSKKNVLKAIEQADLLQEDAKEAETPRSVLEEIGL 348
>ref|XP_536088.2| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3
[Canis familiaris].
Length = 157
Score = 229 bits (584), Expect = 4e-60
Identities = 104/145 (71%), Positives = 129/145 (88%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
+ F+LLFSRQGKLRLQKWY DKERKK+ RE++Q++L+R + SF++W++LK+VYKR
Sbjct: 5 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKELKLVYKR 64
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCA+E QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF+MGG
Sbjct: 65 YASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIMGG 124
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDE 569
++Q+TSKKS +KAIE +D LQE E
Sbjct: 125 EIQETSKKSAVKAIEDSDTLQETME 149
>ref|XP_533634.1| PREDICTED: similar to Clathrin coat assembly protein AP17 (Clathrin
coat associated protein AP17) (Plasma membrane adaptor
AP-2 17 kDa protein) (Clathrin assembly protein 2 small
chain) isoform 1 [Canis familiaris].
Length = 142
Score = 144 bits (364), Expect = 1e-34
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>ref|XP_861120.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 3 [Canis familiaris].
Length = 144
Score = 116 bits (291), Expect = 4e-26
Identities = 51/143 (35%), Positives = 92/143 (64%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>ref|XP_850275.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 2 [Canis familiaris].
Length = 144
Score = 116 bits (291), Expect = 4e-26
Identities = 51/143 (35%), Positives = 92/143 (64%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>ref|XP_536191.2| PREDICTED: similar to Adapter-related protein complex 3 sigma 2
subunit (Sigma-adaptin 3b) (AP-3 complex sigma-3B
subunit) (Sigma-3B-adaptin) [Canis familiaris].
Length = 193
Score = 111 bits (278), Expect = 1e-24
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSE 151
>ref|XP_858735.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 3 [Canis
familiaris].
Length = 162
Score = 109 bits (273), Expect = 4e-24
Identities = 58/159 (36%), Positives = 99/159 (62%), Gaps = 10/159 (6%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED----ESPR 578
E +MGG V +T+ ++ I+ + L++ + +SPR
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSETFIFQSPR 159
>ref|XP_537405.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 1 [Canis familiaris].
Length = 140
Score = 105 bits (262), Expect = 8e-23
Identities = 48/143 (33%), Positives = 89/143 (62%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD+YF V I+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRV----IMFNLDKVHIILDEMVLN 116
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + E
Sbjct: 117 GCIVETNRARILAPLLILDKMSE 139
>ref|XP_865231.1| PREDICTED: similar to adaptor-related protein complex 2, sigma 1
subunit isoform AP17delta isoform 2 [Canis familiaris].
Length = 104
Score = 82.8 bits (203), Expect = 6e-16
Identities = 44/135 (32%), Positives = 70/135 (51%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 83 GEIRETSQTKVLKQL 97
>ref|XP_849444.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 2 [Canis
familiaris].
Length = 169
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLE------WRD 293
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI + + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLI------------------------QVHNIL 96
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 97 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,608,855
Number of extensions: 1414511
Number of successful extensions: 7040
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6925
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens]. 316 3e-86
Alignment gi|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens]. 283 2e-76
Alignment gi|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens]. 229 3e-60
Alignment gi|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo s... 144 1e-34
Alignment gi|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo... 116 3e-26
Alignment gi|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens]. 111 1e-24
Alignment gi|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens]. 108 9e-24
Alignment gi|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens]. 97 2e-20
Alignment gi|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sa... 92 9e-19
Alignment gi|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [H... 83 5e-16
>ref|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens].
Length = 158
Score = 316 bits (809), Expect = 3e-86
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 605
GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158
>ref|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens].
Length = 157
Score = 283 bits (724), Expect = 2e-76
Identities = 137/156 (87%), Positives = 150/156 (96%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGL 602
+VQ+TSKK+VLKAIEQADLLQEE E+PRSVLEE+GL
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEEAETPRSVLEEIGL 156
>ref|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens].
Length = 154
Score = 229 bits (585), Expect = 3e-60
Identities = 104/146 (71%), Positives = 131/146 (89%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+ F+LLFSRQGKLRLQKWY+ DKERKK+ RE++Q++L+R + SF++W++LK+VYK
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIE QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF++G
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDE 569
G++Q+TSKK +KAIE +D+LQE E
Sbjct: 121 GEIQETSKKIAVKAIEDSDMLQETME 146
>ref|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo sapiens].
Length = 142
Score = 144 bits (364), Expect = 1e-34
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>ref|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo sapiens].
Length = 144
Score = 116 bits (291), Expect = 3e-26
Identities = 51/143 (35%), Positives = 92/143 (64%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>ref|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens].
Length = 193
Score = 111 bits (278), Expect = 1e-24
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSE 151
>ref|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens].
Length = 193
Score = 108 bits (270), Expect = 9e-24
Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 151
>ref|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens].
Length = 394
Score = 97.4 bits (241), Expect = 2e-20
Identities = 48/124 (38%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
Frame = +3
Query: 213 RKKMVRELMQVVLARKPKMCSFLEW------RDLKVVYKRYASLYFCCAIEGQDNELITL 374
++++VRE +VL R +C+FLE D K++Y+ YA+LYF ++ ++EL L
Sbjct: 229 QQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGIL 288
Query: 375 ELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 554
+LI +VE LDK F +VCELD+IF+ +K ++IL E +MGG V +T+ ++ IE + L
Sbjct: 289 DLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRL 348
Query: 555 QEED 566
++ +
Sbjct: 349 EKSE 352
>ref|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sapiens].
Length = 159
Score = 92.0 bits (227), Expect = 9e-19
Identities = 39/105 (37%), Positives = 69/105 (65%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIF 446
+YA+L+ + +NE+ E IH +VE+LD+YF V ELD+ F
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF 105
>ref|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [Homo sapiens].
Length = 104
Score = 82.8 bits (203), Expect = 5e-16
Identities = 44/135 (32%), Positives = 70/135 (51%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 83 GEIRETSQTKVLKQL 97
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,375,489
Number of extensions: 1364238
Number of successful extensions: 6501
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6440
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus]. 316 2e-86
Alignment gi|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus]. 265 7e-71
Alignment gi|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus]. 228 7e-60
Alignment gi|NP_941015.2| AP-2 complex subunit sigma [Mus musculus]. 144 1e-34
Alignment gi|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus]. 115 6e-26
Alignment gi|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus]. 111 9e-25
Alignment gi|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus]. 108 8e-24
>ref|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus].
Length = 158
Score = 316 bits (809), Expect = 2e-86
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 605
GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158
>ref|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus].
Length = 160
Score = 265 bits (676), Expect = 7e-71
Identities = 127/146 (86%), Positives = 140/146 (95%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDES 572
+VQ+TSKK+VLKAIEQADLLQE+ E+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEKTET 146
>ref|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus].
Length = 154
Score = 228 bits (581), Expect = 7e-60
Identities = 104/146 (71%), Positives = 130/146 (89%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+ F+LLFSRQGKLRLQKWY DKERKK+ R+++Q VL+R + SF++W++LK+VYK
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIE QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF++G
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDE 569
G++Q+TSKK+ +KAIE +D+LQE E
Sbjct: 121 GEIQETSKKTAVKAIEDSDMLQETME 146
>ref|NP_941015.2| AP-2 complex subunit sigma [Mus musculus].
Length = 142
Score = 144 bits (364), Expect = 1e-34
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>ref|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus].
Length = 144
Score = 115 bits (288), Expect = 6e-26
Identities = 52/143 (36%), Positives = 90/143 (62%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+ + L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D L E
Sbjct: 121 GCIVETNRARILAPLLILDKLSE 143
>ref|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus].
Length = 193
Score = 111 bits (278), Expect = 9e-25
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSE 151
>ref|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus].
Length = 193
Score = 108 bits (270), Expect = 8e-24
Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,074,852
Number of extensions: 1123876
Number of successful extensions: 5135
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5077
Number of HSP's successfully gapped: 7
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-lik... 316 2e-86
Alignment gi|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like... 283 1e-76
Alignment gi|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432... 231 7e-61
Alignment gi|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like... 167 1e-41
Alignment gi|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like... 167 1e-41
Alignment gi|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [... 144 7e-35
Alignment gi|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa]. 117 2e-26
Alignment gi|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 111 7e-25
Alignment gi|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like... 99 6e-21
Alignment gi|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 97 1e-20
>ref|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-like [Sus scrofa].
Length = 158
Score = 316 bits (809), Expect = 2e-86
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 605
GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158
>ref|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 157
Score = 283 bits (724), Expect = 1e-76
Identities = 137/156 (87%), Positives = 150/156 (96%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGL 602
+VQ+TSKK+VLKAIEQADLLQEE E+PRSVLEE+GL
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEEAETPRSVLEEIGL 156
>ref|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432 [Sus scrofa].
Length = 349
Score = 231 bits (588), Expect = 7e-61
Identities = 104/145 (71%), Positives = 130/145 (89%)
Frame = +3
Query: 135 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 314
+ F+LLFSRQGKLRLQKWY DKERKK+ RE++Q++L+R + SF++W++LK+VYKR
Sbjct: 197 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFIDWKELKLVYKR 256
Query: 315 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 494
YASLYFCCA+E QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF+MGG
Sbjct: 257 YASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIMGG 316
Query: 495 DVQDTSKKSVLKAIEQADLLQEEDE 569
++Q+TSKKS +KAIE +D+LQE E
Sbjct: 317 EIQETSKKSAVKAIEDSDMLQETME 341
>ref|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 119
Score = 167 bits (422), Expect = 1e-41
Identities = 82/97 (84%), Positives = 89/97 (91%)
Frame = +3
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIE QDNELITLE+IH YVELLDKYF VCELDIIFNFEK YFILDEFL+G
Sbjct: 22 RYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLG 81
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGL 602
+VQ+TSKK+VLKA EQADLLQEE E+PRSVLEE+GL
Sbjct: 82 EEVQETSKKNVLKATEQADLLQEEVETPRSVLEEIGL 118
>ref|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 146
Score = 167 bits (422), Expect = 1e-41
Identities = 82/97 (84%), Positives = 89/97 (91%)
Frame = +3
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYASLYFCCAIE QDNELITLE+IH YVELLDKYF VCELDIIFNFEK YFILDEFL+G
Sbjct: 49 RYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLG 108
Query: 492 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGL 602
+VQ+TSKK+VLKA EQADLLQEE E+PRSVLEE+GL
Sbjct: 109 EEVQETSKKNVLKATEQADLLQEEVETPRSVLEEIGL 145
>ref|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [Sus scrofa].
Length = 142
Score = 144 bits (364), Expect = 7e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GDVQDTSKKSVLKAI 536
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>ref|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa].
Length = 144
Score = 117 bits (292), Expect = 2e-26
Identities = 51/143 (35%), Positives = 92/143 (64%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 311
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 312 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 491
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 492 GDVQDTSKKSVLKAIEQADLLQE 560
G + +T++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>ref|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 1 [Sus scrofa].
Length = 193
Score = 111 bits (278), Expect = 7e-25
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 566
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNKLEKSE 151
>ref|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like, partial [Sus scrofa].
Length = 189
Score = 98.6 bits (244), Expect = 6e-21
Identities = 50/149 (33%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Frame = +3
Query: 132 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 293
M++ +L+F+ QG+ +L K+Y S +++++RE +V R +C+FLE D
Sbjct: 1 MIKVILIFNNQGRQQLPKFYQPYSRDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 294 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
K++Y+ YA+LYF ++ EL L+LI +VE L+K F ++CELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFHVDSSQTELGILDLIQVFVETLEKCFENICELDLIFHVDKLHNIL 120
Query: 474 DEFLMGGDVQDTSKKSVLKAIEQADLLQE 560
+ +MGG V + + ++ I+ + L++
Sbjct: 121 ADMVMGGKVLEANXXXIVTQIDAQNKLEK 149
>ref|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 2 [Sus scrofa].
Length = 394
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/124 (38%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
Frame = +3
Query: 213 RKKMVRELMQVVLARKPKMCSFLEW------RDLKVVYKRYASLYFCCAIEGQDNELITL 374
++++VRE +VL R +C+FLE D K++Y+ YA+LYF ++ ++EL L
Sbjct: 229 QQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGIL 288
Query: 375 ELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 554
+LI +VE LDK F +VCELD+IF+ +K ++IL E +MGG V +T+ ++ IE + L
Sbjct: 289 DLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNKL 348
Query: 555 QEED 566
++ +
Sbjct: 349 EKSE 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,777,412
Number of extensions: 885507
Number of successful extensions: 4632
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4525
Number of HSP's successfully gapped: 10
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002590
(1152 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 759 0.0
>gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3225
Length = 83014
Score = 759 bits (383), Expect = 0.0
Identities = 415/423 (98%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 690 gcctccccttcttgggccttgagctgtgggctcaggaccctcaaacattccctccctccc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36303 gcctccccttcttgggccttgagctgtgggctcaggaccctcaaacattccctccctccc 36362
Query: 750 attttcccttttcccactgaaggttttaggagctaggaggcaggaaaatgtgaccaagac 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36363 attttcccttttcccactgaaggttttaggagctaggaggcaggaaaatgtgaccaagac 36422
Query: 810 gggggtgctatttggctttcactccctgcctttgaagaactaacgtcaccccaagctccc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36423 gggggtgctatttggctttcactccctgcctttgaagaactaacgtcaccccaagctccc 36482
Query: 870 tccctcccccggcccataactgtaaatatataaatatgtcaggttaaagggaaaaggttt 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36483 tccctcccccggcccataactgtaaatatataaatatgtcaggttaaagggaaaaggttt 36542
Query: 930 tcagggctcttctcttctccctgccccataaacctacctccacccctccctgcagccagc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36543 tcagggctcttctcttctccctgccccataaacctacctccacccctccctgcagccagc 36602
Query: 990 cagggcagcctctctgccttgggagggggacttctgtgtaatgagagggaagtcctgttc 1049
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 36603 cagggcagcctctctgcc-tgggagggggacttctgtgtagtgagagggaagtcctgttc 36661
Query: 1050 cctcagctgccccctcccctttcctttttggctgcagtagggcctccgctcccttccagg 1109
||||||||||||||||||| |||||| ||||||||||||||||||| | | ||||||||
Sbjct: 36662 cctcagctgccccctcccc-ttccttcttggctgcagtagggcctctgtccacttccagg 36720
Query: 1110 gga 1112
|||
Sbjct: 36721 gga 36723
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 134 gatgcgattcatgctgctgttcagccggcagggaaagctgcggctgcaaaaatggtacct 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31980 gatgcgattcatgctgctgttcagccggcagggaaagctgcggctgcaaaaatggtacct 32039
Query: 194 ggccacatcagacaaggagcgaaagaagatggttcgggagctcatgcaggttgttctggc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32040 ggccacatcagacaaggagcgaaagaagatggttcgggagctcatgcaggttgttctggc 32099
Query: 254 tcgcaagcccaagatgtgcagcttcctcgagtggagggacctcaaagtcgtctataagag 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32100 tcgcaagcccaagatgtgcagcttcctcgagtggagggacctcaaagtcgtctataagag 32159
Score = 226 bits (114), Expect = 2e-56
Identities = 130/138 (94%)
Strand = Plus / Plus
Query: 424 tttgtgagctggacatcatcttcaactttgagaaggcctacttcatcttggatgagtttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34548 tttgtgagctggacatcatcttcaactttgagaaggcctacttcatcttggatgagtttc 34607
Query: 484 tcatnnnnnnnnatgtccaggacacgtccaagaagagtgtgctgaaggccattgagcagg 543
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34608 tcatggggggggatgtccaggacacgtccaagaagagtgtgctgaaggccattgagcagg 34667
Query: 544 cggacctgctgcaggagg 561
||||||||||||||||||
Sbjct: 34668 cggacctgctgcaggagg 34685
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 312 agatacgccagcctctacttctgctgtgccatcgagggccaagacaatgagctcatcaca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32745 agatacgccagcctctacttctgctgtgccatcgagggccaagacaatgagctcatcaca 32804
Query: 372 ctggagctgatccatcgatacgtggagctcctggacaaatacttcggcagtgt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32805 ctggagctgatccatcgatacgtggagctcctggacaaatacttcggcagtgt 32857
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 76 gtggagctggcgcctacggtggctgaagagggacgcgcagggccggaggctgcaggatg 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30300 gtggagctggcgcctacggtggctgaagagggacgcgcagggccggaggctgcaggatg 30358
Score = 109 bits (55), Expect = 3e-21
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 23 gggcggggcttcaagcgtgagggagggaaggaggcgaagggatctgaaagggagtggag 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 30141 gggcggggcttcaagcgtgagggagggaaggaggcgaagggatctgaaagggaggggag 30199
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 559 aggaagatgagtcgccgcgcagcgtgctggaggagatgggcctggcatag 608
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36135 aggaagatgagtcgccgcgcagcgtgctggaggagatgggcctggcatag 36184
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,231,983
Number of extensions: 634
Number of successful extensions: 634
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 8
Length of query: 1152
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1131
Effective length of database: 2,808,413,156
Effective search space: 3176315279436
Effective search space used: 3176315279436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)