Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos ... 815 0.0
Alignment gi|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos ta... 371 e-102
Alignment gi|NP_001033147.1| putative aspartate aminotransferase, cytopla... 226 5e-59
>ref|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos taurus].
Length = 430
Score = 815 bits (2105), Expect = 0.0
Identities = 398/426 (93%), Positives = 408/426 (95%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HSGR LSGVA+AFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSGRFLSGVAAAFHPGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPI GLAEFCKASAELALGENNEVLKSG
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSG 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
RYVTVQTISGTGALRIGA+FLQRFFKFSRDVFLPKP+WGNHTPIFRDAGMQL SYRYYDP
Sbjct: 125 RYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDFTGA+EDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMAT+VKKNNLFAFFDM
Sbjct: 185 KTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV
Sbjct: 245 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRPMYSNPP+NGARIASTILTSPDLR+QWL EVKGMADRIISMRTQLVSNLKK
Sbjct: 305 ESQLKILIRPMYSNPPINGARIASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLKK 364
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 1386
EGSSHNWQHI+DQIGMFC+TG+KPEQVERLTKEFSIYMTKDGRISVAGVTSGNV YLAHA
Sbjct: 365 EGSSHNWQHIIDQIGMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHA 424
Query: 1387 IHQVTK 1404
IHQVTK
Sbjct: 425 IHQVTK 430
>ref|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos taurus].
Length = 413
Score = 371 bits (953), Expect = e-102
Identities = 189/402 (47%), Positives = 266/402 (66%), Gaps = 7/402 (1%)
Frame = +1
Query: 220 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDK 396
V P + +T F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA +++
Sbjct: 10 VPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIANDSSINH 69
Query: 397 EYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD 576
EYLPI GLAEF ++ LALG+++ L+ R VQ + GTGALRIGA FL R++ + +
Sbjct: 70 EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNN 129
Query: 577 ----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 741
V++ P+W NH +F AG + + SY Y+D G D G L D+ K P S+ +L
Sbjct: 130 KDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVL 189
Query: 742 HACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGI 921
HACAHNPTG DP PEQWK++A+++K+ LF FFD AYQ FASG KDAWA+R+F+ +G
Sbjct: 190 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQAFASGSLEKDAWAIRYFVSEGF 249
Query: 922 NVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIAST 1101
+ QS++KN GLY ERVG TVV K+ + RV SQ++ ++R +SNPP GARI +
Sbjct: 250 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRITWSNPPAQGARIVAR 309
Query: 1102 ILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPE 1281
L+ P+L +W VK MADRI++MR++L + L+ + W HI +QIGMF FTG+ P+
Sbjct: 310 TLSDPELFNEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITEQIGMFSFTGLNPK 369
Query: 1282 QVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
QVE L E IY+ GRI++ G+T+ N+ Y+A +IH+ VTK
Sbjct: 370 QVEYLINEKHIYLLPSGRINMCGLTTKNLEYVATSIHEAVTK 411
>ref|NP_001033147.1| putative aspartate aminotransferase, cytoplasmic 2 [Bos taurus].
Length = 407
Score = 226 bits (577), Expect = 5e-59
Identities = 122/380 (32%), Positives = 206/380 (54%), Gaps = 1/380 (0%)
Frame = +1
Query: 259 EAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK-NLDKEYLPIGGLAEFCK 435
+ +K+D N KM L G+P+V VRK QIA +L+ EY P+ G+ F +
Sbjct: 22 KTYKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQ 81
Query: 436 ASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTP 615
AS L G+N++V+ R VQT+ +GA ++GA FL+ + + S+ V++ H
Sbjct: 82 ASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGL 141
Query: 616 IFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWK 795
IF+D G ++ + ++D D L+ + P V ++ + + P QW
Sbjct: 142 IFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGN----CQLTPSQWT 197
Query: 796 EMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGER 975
++ TL+K +F FFD+ YQG ++GD +DA + +F+ QG QS +KN G+Y E
Sbjct: 198 QLMTLMKSKEIFPFFDIPYQGLSTGDLEEDARFLHYFVSQGFEFFCSQSLSKNFGIYDEG 257
Query: 976 VGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGM 1155
VG VV D + RV SQL R ++ NPP GARI +++L +P ++ +W Q ++G+
Sbjct: 258 VGTLVVVTLDNQLLLRVLSQLMNFARALWLNPPTTGARIITSVLCNPAMQGEWRQSLEGV 317
Query: 1156 ADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGR 1335
+ ++ + ++ L+ G+ +W HI +Q G + G+ +QVE L E IY+ K+GR
Sbjct: 318 VENVMMTKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNSQQVEYLISEKHIYIPKNGR 377
Query: 1336 ISVAGVTSGNVGYLAHAIHQ 1395
I+ + S N+ Y+ +I++
Sbjct: 378 INFTCINSYNIDYITSSINE 397
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 96,255,523
Number of extensions: 2907039
Number of successful extensions: 8671
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8650
Number of HSP's successfully gapped: 3
Length of query: 790
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 680
Effective length of database: 14,041,694
Effective search space: 9548351920
Effective search space used: 9548351920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535278.2| PREDICTED: similar to Aspartate aminotransferas... 814 0.0
Alignment gi|XP_851273.1| PREDICTED: similar to Aspartate aminotransferas... 738 0.0
Alignment gi|XP_863389.1| PREDICTED: similar to Aspartate aminotransferas... 723 0.0
Alignment gi|XP_543963.1| PREDICTED: similar to aspartate aminotransferas... 378 e-104
Alignment gi|XP_861285.1| PREDICTED: similar to aspartate aminotransferas... 352 1e-96
Alignment gi|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Can... 196 1e-49
Alignment gi|XP_851350.1| PREDICTED: similar to Aspartate aminotransferas... 135 2e-31
>ref|XP_535278.2| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) [Canis familiaris].
Length = 570
Score = 814 bits (2103), Expect = 0.0
Identities = 400/445 (89%), Positives = 412/445 (92%)
Frame = +1
Query: 70 LRSVXXXXXXXXXXXXXXXHSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPIL 249
LRSV HSGRVLSGVA+AFHPGL HVEMGPPDPIL
Sbjct: 126 LRSVVPLPTAFSPPSMALLHSGRVLSGVAAAFHPGLAGAASARASSWWTHVEMGPPDPIL 185
Query: 250 GVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEF 429
GVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPI GLAEF
Sbjct: 186 GVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEF 245
Query: 430 CKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNH 609
CKASAELALGENNEVLKS RYVTVQTISGTGALRIGA+FLQRFFKFS+DVFLPKPSWGNH
Sbjct: 246 CKASAELALGENNEVLKSSRYVTVQTISGTGALRIGASFLQRFFKFSQDVFLPKPSWGNH 305
Query: 610 TPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQ 789
TPIFRDAGMQLH YRYYDPKTCGFDFTGA+EDISK+P QSV+LLHACAHNPTGVDPRPEQ
Sbjct: 306 TPIFRDAGMQLHGYRYYDPKTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQ 365
Query: 790 WKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYG 969
WKE+AT+VKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYG
Sbjct: 366 WKEIATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYG 425
Query: 970 ERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVK 1149
ERVGAFTVVCKDA+EAKRVESQLKILIRPMYSNPP+NGARIASTILTSPDLR+QWLQEVK
Sbjct: 426 ERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPINGARIASTILTSPDLRKQWLQEVK 485
Query: 1150 GMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKD 1329
GMADRIISMRTQLVSNLKKEGSSHNWQHI DQIGMFCFTG+KPEQVERLTKEFSIYMTKD
Sbjct: 486 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKD 545
Query: 1330 GRISVAGVTSGNVGYLAHAIHQVTK 1404
GRISVAGVTSGNVGYLAHAIHQVTK
Sbjct: 546 GRISVAGVTSGNVGYLAHAIHQVTK 570
>ref|XP_851273.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 2 [Canis familiaris].
Length = 393
Score = 738 bits (1904), Expect = 0.0
Identities = 357/387 (92%), Positives = 369/387 (95%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HSGRVLSGVA+AFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSGRVLSGVAAAFHPGLAGAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPI GLAEFCKASAELALGENNEVLKS
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSS 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
RYVTVQTISGTGALRIGA+FLQRFFKFS+DVFLPKPSWGNHTPIFRDAGMQLH YRYYDP
Sbjct: 125 RYVTVQTISGTGALRIGASFLQRFFKFSQDVFLPKPSWGNHTPIFRDAGMQLHGYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDFTGA+EDISK+P QSV+LLHACAHNPTGVDPRPEQWKE+AT+VKKNNLFAFFDM
Sbjct: 185 KTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDA+EAKRV
Sbjct: 245 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRPMYSNPP+NGARIASTILTSPDLR+QWLQEVKGMADRIISMRTQLVSNLKK
Sbjct: 305 ESQLKILIRPMYSNPPINGARIASTILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKK 364
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQV 1287
EGSSHNWQHI DQIGMFCFTG+KPEQV
Sbjct: 365 EGSSHNWQHITDQIGMFCFTGLKPEQV 391
>ref|XP_863389.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 3 [Canis familiaris].
Length = 394
Score = 723 bits (1865), Expect = 0.0
Identities = 362/426 (84%), Positives = 373/426 (87%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HSGRVLSGVA+AFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSGRVLSGVAAAFHPGLAGAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPI GLAEFCKASAELALGENNEVLKS
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSS 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
RYVTVQTISGTGALRIGA+FLQRFFKFS+DVFLPKPSWGNHTPIFRDAGMQLH YRYYDP
Sbjct: 125 RYVTVQTISGTGALRIGASFLQRFFKFSQDVFLPKPSWGNHTPIFRDAGMQLHGYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDFTGA+EDISK+P QSV+LLHACAHNPTGVDPRPEQWKE+AT+VKKNNLFAFFDM
Sbjct: 185 KTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDA+EAKRV
Sbjct: 245 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRPMYSNPP+NGARIASTILTSPDLR+QWLQEVKGMADRIISMR
Sbjct: 305 ESQLKILIRPMYSNPPINGARIASTILTSPDLRKQWLQEVKGMADRIISMR--------- 355
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 1386
ERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA
Sbjct: 356 ---------------------------ERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 388
Query: 1387 IHQVTK 1404
IHQVTK
Sbjct: 389 IHQVTK 394
>ref|XP_543963.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 1 [Canis
familiaris].
Length = 413
Score = 378 bits (971), Expect = e-104
Identities = 193/402 (48%), Positives = 270/402 (67%), Gaps = 7/402 (1%)
Frame = +1
Query: 220 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN-LDK 396
V P + +T F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA + L+
Sbjct: 10 VPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQKIANDHSLNH 69
Query: 397 EYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD 576
EYLPI GLAEF ++ L LG+++ L+ R VQ++ GTGALRIGA FL R++ + +
Sbjct: 70 EYLPILGLAEFRTCASRLVLGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNN 129
Query: 577 ----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 741
V++ P+W NH +F AG + + SY Y+D G D G L D+ P S+ +L
Sbjct: 130 KDTPVYVSSPTWENHNGVFSAAGFKDIRSYHYWDEAKRGLDLQGFLNDLENAPEFSIFVL 189
Query: 742 HACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGI 921
HACAHNPTG DP PEQWK++A+++K+ LF FFD AYQGFASGD KDAWAVR+F+ +G
Sbjct: 190 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGDLEKDAWAVRYFVSEGF 249
Query: 922 NVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIAST 1101
+ QS++KN GLY ERVG TVV KDA+ RV SQ++ ++R +SNPP GARI ++
Sbjct: 250 ELFCAQSFSKNFGLYNERVGNLTVVAKDADSILRVLSQMEKIVRITWSNPPAQGARIVAS 309
Query: 1102 ILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPE 1281
L++P+L ++W VK MADRI++MR++L L+ + W HI +QIGMF FTG+ P+
Sbjct: 310 TLSNPELFKEWTGNVKTMADRILTMRSKLRERLEALKTPGTWNHITEQIGMFSFTGLNPK 369
Query: 1282 QVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
QVE L E IY+ GRI++ G+T+ N+ Y+A +IH+ VTK
Sbjct: 370 QVEYLVNEKHIYLLPSGRINMCGLTTKNLEYVATSIHEAVTK 411
>ref|XP_861285.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 2 [Canis
familiaris].
Length = 394
Score = 352 bits (902), Expect = 1e-96
Identities = 184/402 (45%), Positives = 260/402 (64%), Gaps = 7/402 (1%)
Frame = +1
Query: 220 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN-LDK 396
V P + +T F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA + L+
Sbjct: 10 VPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQKIANDHSLNH 69
Query: 397 EYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD 576
EYLPI GLAEF ++ L LG+++ L+ R VQ++ GTGALRIGA FL R++ + +
Sbjct: 70 EYLPILGLAEFRTCASRLVLGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNN 129
Query: 577 ----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 741
V++ P+W NH +F AG + + SY Y+D G D G L D+ P S+ +L
Sbjct: 130 KDTPVYVSSPTWENHNGVFSAAGFKDIRSYHYWDEAKRGLDLQGFLNDLENAPEFSIFVL 189
Query: 742 HACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGI 921
HACAHNPTG DP PEQWK++A+++K+ LF FFD AYQGFASGD KDAWAVR+F+ +G
Sbjct: 190 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGDLEKDAWAVRYFVSEGF 249
Query: 922 NVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIAST 1101
+ QS++KN GLY ERVG TVV KDA+ RV SQ++ ++R +SNPP GARI ++
Sbjct: 250 ELFCAQSFSKNFGLYNERVGNLTVVAKDADSILRVLSQMEKIVRITWSNPPAQGARIVAS 309
Query: 1102 ILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPE 1281
L++P+L ++W +R+ +++T W HI +QIGMF FTG+ P+
Sbjct: 310 TLSNPELFKEW--------ERLEALKT-----------PGTWNHITEQIGMFSFTGLNPK 350
Query: 1282 QVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
QVE L E IY+ GRI++ G+T+ N+ Y+A +IH+ VTK
Sbjct: 351 QVEYLVNEKHIYLLPSGRINMCGLTTKNLEYVATSIHEAVTK 392
>ref|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Canis familiaris].
Length = 406
Score = 196 bits (497), Expect = 1e-49
Identities = 114/380 (30%), Positives = 198/380 (52%), Gaps = 1/380 (0%)
Frame = +1
Query: 259 EAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK-NLDKEYLPIGGLAEFCK 435
+ +K+D KK+ L G+P+V V K QI+ +L+ EY+P+ G+ F +
Sbjct: 22 KTYKQDDCPKKIFLAYRVCMTTEGQPWVSSVVPKIRLQISQDPSLNYEYMPMMGMKSFME 81
Query: 436 ASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTP 615
AS +L G+ N+V+ R V T+ GA ++GA FL+ + K SR V++ +H
Sbjct: 82 ASLKLLFGKYNQVIVENRVGGVHTVGDNGAFQLGAQFLKIWRKDSRIVYIISSKKESHGL 141
Query: 616 IFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWK 795
+F+D G + Y +D K D L+ + P + ++ N QW
Sbjct: 142 VFQDMGFTVCEYSLWDSKQLCMDPNVLLDVAEQAPHGCIFVIG----NIGDCKLTQSQWA 197
Query: 796 EMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGER 975
+ +K +F FFD+ YQG ++G+ +D +++F+ Q QS +K G+Y E
Sbjct: 198 RLIASMKSKQIFPFFDIPYQGLSTGNLEEDTGFLQYFVSQDFEFFCSQSLSKIFGIYDEG 257
Query: 976 VGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGM 1155
VG VV + + V SQL L + ++ NPP GARI ++IL +P L+ +W Q +K +
Sbjct: 258 VGVLVVVALNNQLLLCVLSQLMNLTQALWLNPPTRGARIITSILCNPALQGEWKQSLKEL 317
Query: 1156 ADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGR 1335
+ I+ ++ ++ L+ G+ +W HI DQ G + G+ ++VE L K+ IY+ K+GR
Sbjct: 318 VENIMLIKEKVKEKLRLLGTPGSWDHITDQNGPQSYLGLNSQKVEYLVKKKHIYIPKNGR 377
Query: 1336 ISVAGVTSGNVGYLAHAIHQ 1395
I+ + + N+ Y+ +I++
Sbjct: 378 INFTCINAWNIDYITQSINE 397
>ref|XP_851350.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) [Canis familiaris].
Length = 123
Score = 135 bits (339), Expect = 2e-31
Identities = 75/123 (60%), Positives = 89/123 (72%)
Frame = +1
Query: 844 MAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKR 1023
MA QGFA+ DGNKDAW V HF+EQGINV CQSYAK MGL GE +GAFTVV KDA+EA+
Sbjct: 1 MASQGFANSDGNKDAWTVCHFMEQGINVGPCQSYAKIMGLSGEHMGAFTVVSKDADEAR- 59
Query: 1024 VESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLK 1203
RP P++G +IA TI TSPDL++Q QEVKG+AD++ M TQLVS+LK
Sbjct: 60 ---------RPF----PISGGQIALTIQTSPDLQKQRWQEVKGLADQVPIMWTQLVSSLK 106
Query: 1204 KEG 1212
K G
Sbjct: 107 KGG 109
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 99,487,012
Number of extensions: 2863472
Number of successful extensions: 9192
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9157
Number of HSP's successfully gapped: 8
Length of query: 790
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 679
Effective length of database: 15,174,208
Effective search space: 10303287232
Effective search space used: 10303287232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002071.2| aspartate aminotransferase, mitochondrial precu... 787 0.0
Alignment gi|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo s... 382 e-105
Alignment gi|NP_689626.2| putative aspartate aminotransferase, cytoplasmi... 199 7e-51
>ref|NP_002071.2| aspartate aminotransferase, mitochondrial precursor [Homo sapiens].
Length = 430
Score = 787 bits (2033), Expect = 0.0
Identities = 382/426 (89%), Positives = 401/426 (94%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HSGRVL G+A+AFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSGRVLPGIAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGEN+EVLKSG
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSG 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
R+VTVQTISGTGALRIGA+FLQRFFKFSRDVFLPKP+WGNHTPIFRDAGMQL YRYYDP
Sbjct: 125 RFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDFTGA+EDISKIP QSV+LLHACAHNPTGVDPRPEQWKE+AT+VKK NLFAFFDM
Sbjct: 185 KTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDG+KDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFT+VCKDA+EAKRV
Sbjct: 245 AYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRPMYSNPP+NGARIA+ IL +PDLR+QWLQEVK MADRII MRTQLVSNLKK
Sbjct: 305 ESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQWLQEVKVMADRIIGMRTQLVSNLKK 364
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 1386
EGS+HNWQHI DQIGMFCFTG+KPEQVERL KEFSIYMTKDGRISVAGVTS NVGYLAHA
Sbjct: 365 EGSTHNWQHITDQIGMFCFTGLKPEQVERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHA 424
Query: 1387 IHQVTK 1404
IHQVTK
Sbjct: 425 IHQVTK 430
>ref|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo sapiens].
Length = 413
Score = 382 bits (980), Expect = e-105
Identities = 193/402 (48%), Positives = 274/402 (68%), Gaps = 7/402 (1%)
Frame = +1
Query: 220 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN-LDK 396
V P + +T F+ D + +K+NLGVGAYR D+ P+VLP V+K E +IA N L+
Sbjct: 10 VPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNH 69
Query: 397 EYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD 576
EYLPI GLAEF ++ LALG+++ LK R VQ++ GTGALRIGA+FL R++ + +
Sbjct: 70 EYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNN 129
Query: 577 ----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 741
V++ P+W NH +F AG + + SYRY+D + G D G L D+ P S+++L
Sbjct: 130 KNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVL 189
Query: 742 HACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGI 921
HACAHNPTG+DP PEQWK++A+++K LF FFD AYQGFASG+ +DAWA+R+F+ +G
Sbjct: 190 HACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGF 249
Query: 922 NVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIAST 1101
QS++KN GLY ERVG TVV K+ E +V SQ++ ++R +SNPP GARI ++
Sbjct: 250 EFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVAS 309
Query: 1102 ILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPE 1281
L++P+L ++W VK MADRI++MR++L + L+ + W HI DQIGMF FTG+ P+
Sbjct: 310 TLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPK 369
Query: 1282 QVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
QVE L E IY+ GRI+V+G+T+ N+ Y+A +IH+ VTK
Sbjct: 370 QVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTK 411
>ref|NP_689626.2| putative aspartate aminotransferase, cytoplasmic 2 [Homo sapiens].
Length = 421
Score = 199 bits (507), Expect = 7e-51
Identities = 113/383 (29%), Positives = 203/383 (53%), Gaps = 4/383 (1%)
Frame = +1
Query: 259 EAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK-NLDKEYLPIGGLAEFCK 435
+ +K+D K+ L + G P+V V+K QI+ +L+ EYLP GL F +
Sbjct: 22 KTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQ 81
Query: 436 ASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTP 615
AS L G++++ + R V T+ +GA ++G FL+ + K +R V++ H
Sbjct: 82 ASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGL 141
Query: 616 IFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHA---CAHNPTGVDPRPE 786
+F+D G ++ Y +DPK D L + +IP V+++ C P+G
Sbjct: 142 VFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNIIDCKLTPSG------ 195
Query: 787 QWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLY 966
W ++ +++K +F FFD+ QG + D +D +++F+ QG QS +KN G+Y
Sbjct: 196 -WAKLMSMIKSKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIY 254
Query: 967 GERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEV 1146
E VG VV + ++ V SQL+ L + ++ NPP GAR+ ++IL +P L +W Q +
Sbjct: 255 DEGVGMLVVVAVNNQQLLCVLSQLEGLAQALWLNPPNTGARVITSILCNPALLGEWKQSL 314
Query: 1147 KGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTK 1326
K + + I+ + ++ L+ G+ +W HI +Q G + G+ +QVE L ++ IY+ K
Sbjct: 315 KEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGTHGYLGLNSQQVEYLVRKKHIYIPK 374
Query: 1327 DGRISVAGVTSGNVGYLAHAIHQ 1395
+G+I+ + + + N+ Y+ I++
Sbjct: 375 NGQINFSCINANNINYITEGINE 397
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 97,960,181
Number of extensions: 2829585
Number of successful extensions: 8798
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8765
Number of HSP's successfully gapped: 3
Length of query: 790
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 679
Effective length of database: 14,638,160
Effective search space: 9939310640
Effective search space used: 9939310640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus ... 803 0.0
Alignment gi|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus mu... 376 e-104
Alignment gi|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytop... 294 2e-79
Alignment gi|NP_083950.1| putative aspartate aminotransferase, cytoplasmi... 193 6e-49
>ref|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus musculus].
Length = 430
Score = 803 bits (2074), Expect = 0.0
Identities = 389/426 (91%), Positives = 407/426 (95%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HS R+LSG+A+AFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSSRILSGMAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
R+VTVQTISGTGALR+GA+FLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQL YRYYDP
Sbjct: 125 RFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDF+GALEDISKIP QSV+LLHACAHNPTGVDPRPEQWKE+A++VKK NLFAFFDM
Sbjct: 185 KTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDG+KDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV
Sbjct: 245 AYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRP+YSNPP+NGARIA+TILTSPDLR+QWLQEVKGMADRIISMRTQLVSNLKK
Sbjct: 305 ESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKK 364
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 1386
EGSSHNWQHI DQIGMFCFTG+KPEQVERLTKEFS+YMTKDGRISVAGVTSGNVGYLAHA
Sbjct: 365 EGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHA 424
Query: 1387 IHQVTK 1404
IHQVTK
Sbjct: 425 IHQVTK 430
>ref|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus musculus].
Length = 413
Score = 376 bits (966), Expect = e-104
Identities = 189/402 (47%), Positives = 269/402 (66%), Gaps = 7/402 (1%)
Frame = +1
Query: 220 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN-LDK 396
V PP + +T F+ D + +K+NLGVGAYR D +P+VLP VRK E +IA N L+
Sbjct: 10 VPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQKIANDNSLNH 69
Query: 397 EYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD 576
EYLPI GLAEF ++ L LG+N+ ++ R VQ++ GTGALRIGA+FL R++ + +
Sbjct: 70 EYLPILGLAEFRSCASRLVLGDNSLAIRENRVGGVQSLGGTGALRIGADFLGRWYNGTDN 129
Query: 577 ----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 741
+++ P+W NH +F AG + + Y Y+D + G D G L D+ P S+ +L
Sbjct: 130 KNTPIYVSSPTWENHNAVFSAAGFKDIRPYCYWDAEKRGLDLQGFLNDLENAPEFSIFVL 189
Query: 742 HACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGI 921
HACAHNPTG DP PEQWK++A ++++ LF FFD AYQGFASGD KDAWA+R+F+ +G
Sbjct: 190 HACAHNPTGTDPTPEQWKQIAAVMQRRFLFPFFDSAYQGFASGDLEKDAWAIRYFVSEGF 249
Query: 922 NVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIAST 1101
+ QS++KN GLY ERVG TVV K+++ RV SQ++ ++R +SNPP GARI +
Sbjct: 250 ELFCAQSFSKNFGLYNERVGNLTVVGKESDSVLRVLSQMEKIVRITWSNPPAQGARIVAA 309
Query: 1102 ILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPE 1281
L+ P+L ++W VK MADRI++MR++L + L+ + W HI +QIGMF FTG+ P+
Sbjct: 310 TLSDPELFKEWKGNVKTMADRILTMRSELRARLEALKTPGTWSHITEQIGMFSFTGLNPK 369
Query: 1282 QVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
QVE L E IY+ GRI++ G+T+ N+ Y+A +IH+ VTK
Sbjct: 370 QVEYLVNEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK 411
>ref|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytoplasmic-like, partial [Mus
musculus].
Length = 318
Score = 294 bits (752), Expect = 2e-79
Identities = 148/313 (47%), Positives = 202/313 (64%), Gaps = 10/313 (3%)
Frame = +1
Query: 496 TVQTISGTGALRIGANFLQRFFKFSRD------VFLPKPSWGNHTPIFRDAGMQLHSYRY 657
++QTISGTGA +G FL RF+ D V+L P+W NH IF + G+ + Y Y
Sbjct: 3 SIQTISGTGACHLGGLFLSRFYNPYGDASKKPTVYLSNPTWANHNQIFSNVGLPIAQYPY 62
Query: 658 YDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAF 837
+D KT G D G + +S P +S+ILLHACAHNPTGVDP QW+E+A ++ F F
Sbjct: 63 FDQKTKGLDIDGMKKALSDAPERSIILLHACAHNPTGVDPTLAQWREIAEIMAAKGHFPF 122
Query: 838 FDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEA 1017
FD AYQGFASGD ++DA A+R F+E G + + QS+AKN GLYG+R G F + + +A
Sbjct: 123 FDTAYQGFASGDLDRDASAIRLFVELGFELVVAQSFAKNFGLYGQRAGCFHFISAPSPDA 182
Query: 1018 ----KRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQ 1185
RV SQL +L R SNPP+ GA++AS +L P L +W + ++ M+ RII MR
Sbjct: 183 ASITTRVASQLTLLQRSEISNPPIYGAKVASIVLNDPALFAEWKENLRTMSGRIIDMRKA 242
Query: 1186 LVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGN 1365
L + L++ G+ W HI DQIGMF FTG+ +QV +L +EF IYMTK+GRIS+AG+ N
Sbjct: 243 LRAKLEELGTPGPWNHITDQIGMFSFTGLNEKQVAKLREEFHIYMTKNGRISMAGLNKKN 302
Query: 1366 VGYLAHAIHQVTK 1404
V Y+A A+ +V +
Sbjct: 303 VDYVARAVDKVVR 315
>ref|NP_083950.1| putative aspartate aminotransferase, cytoplasmic 2 [Mus musculus].
Length = 404
Score = 193 bits (490), Expect = 6e-49
Identities = 112/378 (29%), Positives = 196/378 (51%), Gaps = 1/378 (0%)
Frame = +1
Query: 265 FKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK-NLDKEYLPIGGLAEFCKAS 441
+++D K+ L + G P+V V K QIA +LD EYLP+ GL F ++S
Sbjct: 24 YRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEYLPLVGLKSFIQSS 83
Query: 442 AELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIF 621
EL G+++E + R V + +GA ++GA FL+ + K + V + IF
Sbjct: 84 LELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCGLIF 143
Query: 622 RDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEM 801
+D G ++ Y ++ D + +E + IP S++++ N T QW ++
Sbjct: 144 QDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVIG----NITDCKFTQNQWTKL 199
Query: 802 ATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVG 981
+++K +F FFD+ QG ++GD +D +++F+ G+ QS +KN G+Y E VG
Sbjct: 200 MSIIKSKQIFPFFDIPCQGLSTGDLEEDTKILQYFVSLGLEFFCSQSLSKNFGIYDEGVG 259
Query: 982 AFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMAD 1161
V + V SQL ++ ++ NPP GARI ++IL +P L +W Q +KG+ +
Sbjct: 260 ILVVAALSNQHLLCVLSQLMDYVQALWGNPPATGARIITSILCNPALFGEWKQSLKGVVE 319
Query: 1162 RIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRIS 1341
++ ++ ++ L+ G+ +W HI Q G + G+ +QVE L K+ IY+ K RI+
Sbjct: 320 NMMLIKEKVKEKLRLLGTPGSWDHITRQSGTHGYLGLTYQQVEFLVKKKHIYLPKTSRIN 379
Query: 1342 VAGVTSGNVGYLAHAIHQ 1395
+ + N+ Y+ +IH+
Sbjct: 380 FTCINARNIDYITQSIHE 397
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 83,100,484
Number of extensions: 2379704
Number of successful extensions: 7329
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7294
Number of HSP's successfully gapped: 4
Length of query: 790
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 681
Effective length of database: 12,343,635
Effective search space: 8406015435
Effective search space used: 8406015435
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus ... 837 0.0
Alignment gi|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus sc... 377 e-104
>ref|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus scrofa].
Length = 430
Score = 837 bits (2162), Expect = 0.0
Identities = 413/426 (96%), Positives = 413/426 (96%)
Frame = +1
Query: 127 HSGRVLSGVASAFHPGLXXXXXXXXXXXXXHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 306
HSGRVLSGVASAFHPGL HVEMGPPDPILGVTEAFKRDTNSKKMNLGV
Sbjct: 5 HSGRVLSGVASAFHPGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGV 64
Query: 307 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 486
GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG
Sbjct: 65 GAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSG 124
Query: 487 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 666
RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP
Sbjct: 125 RYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDP 184
Query: 667 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 846
KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM
Sbjct: 185 KTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDM 244
Query: 847 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 1026
AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV
Sbjct: 245 AYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRV 304
Query: 1027 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 1206
ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK
Sbjct: 305 ESQLKILIRPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKK 364
Query: 1207 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 1386
EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA
Sbjct: 365 EGSSHNWQHIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHA 424
Query: 1387 IHQVTK 1404
IHQVTK
Sbjct: 425 IHQVTK 430
>ref|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus scrofa].
Length = 413
Score = 377 bits (969), Expect = e-104
Identities = 195/411 (47%), Positives = 271/411 (65%), Gaps = 18/411 (4%)
Frame = +1
Query: 226 MGPPDPILGVTEA-----------FKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQ 372
M PP V +A F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 60
Query: 373 IAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFL 549
IA +L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGALRIGA FL
Sbjct: 61 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 120
Query: 550 QRFFKFSRD----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFTGALEDISK 714
R++ + + V++ P+W NH +F AG + + SYRY+D + G D G L D+
Sbjct: 121 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 180
Query: 715 IPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWA 894
P S+ +LHACAHNPTG DP PEQWK++A+++K+ LF FFD AYQGFASG+ KDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 240
Query: 895 VRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPP 1074
+R+F+ +G + QS++KN GLY ERVG TVV K+ + RV SQ++ ++R +SNPP
Sbjct: 241 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 300
Query: 1075 VNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGM 1254
GARI + L+ P+L +W VK MADRI+SMR++L + L+ + W HI DQIGM
Sbjct: 301 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGM 360
Query: 1255 FCFTGIKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQ-VTK 1404
F FTG+ P+QVE L E IY+ GRI++ G+T+ N+ Y+A +IH+ VTK
Sbjct: 361 FSFTGLNPKQVEYLINEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK 411
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 63,046,181
Number of extensions: 2039030
Number of successful extensions: 5513
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5496
Number of HSP's successfully gapped: 2
Length of query: 790
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 683
Effective length of database: 8,679,953
Effective search space: 5928407899
Effective search space used: 5928407899
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002593
(2370 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 402 e-109
Sscrofa_Chr05 224 2e-55
>Sscrofa_Chr06
|| Length = 157765593
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 1 ctcgcccagggagttagctgtccttaccttcagcaggagccggcgcctccgtgtccgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527772 ctcgcccagggagttagctgtccttaccttcagcaggagccggcgcctccgtgtccgccc 18527713
Query: 61 gcctggcatctccgctccgtcctgcagctacccactgctctcttgccgcccaccatggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527712 gcctggcatctccgctccgtcctgcagctacccactgctctcttgccgcccaccatggcc 18527653
Query: 121 ctgctgcactccggccgcgtcctgtccggagtcgcctccgccttccacccaggcctcgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527652 ctgctgcactccggccgcgtcctgtccggagtcgcctccgccttccacccaggcctcgct 18527593
Query: 181 gctgcagcatctgccagagccag 203
|||||||||||||||||||||||
Sbjct: 18527592 gctgcagcatctgccagagccag 18527570
Score = 335 bits (169), Expect = 7e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 967 ggtgagcgtgtgggagccttcactgtggtctgcaaagatgctgaggaagccaaaagggtg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18502339 ggtgagcgtgtgggagccttcactgtggtctgcaaagatgctgaggaagccaaaagggtg 18502280
Query: 1027 gagtcacagttgaagatcttgatccgtcctatgtattccaaccctcctgtcaacggggcc 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18502279 gagtcacagttgaagatcttgatccgtcctatgtattccaaccctcctgtcaacggggcc 18502220
Query: 1087 cggattgcctcgaccatcctgaccagcccggatctgcggcaacaatggt 1135
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18502219 cggattgcctcgaccatcctgaccagcccggatctgcggcaacaatggt 18502171
Score = 323 bits (163), Expect = 3e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 549 gcaaagattttttaagttcagccgagatgtcttcctgccgaaaccatcctggggaaatca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18504671 gcaaagattttttaagttcagccgagatgtcttcctgccgaaaccatcctggggaaatca 18504612
Query: 609 cacccccatcttcagggacgctggcatgcagctgcatagttaccgatactatgaccccaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18504611 cacccccatcttcagggacgctggcatgcagctgcatagttaccgatactatgaccccaa 18504552
Query: 669 gacctgcggctttgacttcacaggtgctcttgaggacatttca 711
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18504551 gacctgcggctttgacttcacaggtgctcttgaggacatttca 18504509
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 815 agaaaaacaatctctttgcattctttgacatggcctaccaaggctttgccagtggcgatg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18503444 agaaaaacaatctctttgcattctttgacatggcctaccaaggctttgccagtggcgatg 18503385
Query: 875 gtaacaaggatgcttgggcagtgcgccacttcatcgaacagggcatcaatgtttgtctct 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18503384 gtaacaaggatgcttgggcagtgcgccacttcatcgaacagggcatcaatgtttgtctct 18503325
Query: 935 gccagtcctatgccaagaacatgggcttatacggt 969
|||||||||||||||||||||||||||||||||||
Sbjct: 18503324 gccagtcctatgccaagaacatgggcttatacggt 18503290
Score = 200 bits (101), Expect = 3e-48
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 712 aaaataccagctcagagtgtaattctcctgcacgcctgtgcccacaatcccacaggagtg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18504280 aaaataccagctcagagtgtaattctcctgcacgcctgtgcccacaatcccacaggagtg 18504221
Query: 772 gaccctcgtcctgagcagtggaaggagatggccacactggtgaag 816
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18504220 gaccctcgtcctgagcagtggaaggagatggccacactggcgaag 18504176
Score = 121 bits (61), Expect = 2e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 489 gtatgtcaccgtgcagaccatttctgggaccggggccctgcggatcggagccaattttct 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18505278 gtatgtcaccgtgcagaccatttctgggaccggggccctgcggatcggagccaattttct 18505219
Query: 549 g 549
|
Sbjct: 18505218 g 18505218
>Sscrofa_Chr05
|| Length = 111506441
Score = 224 bits (113), Expect = 2e-55
Identities = 524/661 (79%), Gaps = 15/661 (2%)
Strand = Plus / Plus
Query: 847 gcctaccaaggctttgccagtggcgatggtaacaaggatgcttgggcagtgcgccacttc 906
||||||||||||||||||| ||| |||||||||||| | ||||| ||| |||||||
Sbjct: 91916589 gcctaccaaggctttgccactggtgatggtaacaagaacatctgggctgtgtaccacttc 91916648
Query: 907 atcgaacagggcatcaatgtttgtctctgccagtcctatgccaagaacatgggcttatac 966
|| || ||||||| ||||||||||||||| | ||||||||| |||||||||||||| |
Sbjct: 91916649 attaaagagggcattaatgtttgtctctgctaatcctatgccgagaacatgggcttacat 91916708
Query: 967 ggtgagcgtgtgggagccttcactgtggt-ctgcaaagatgctgaggaagccaaaagggt 1025
||| ||| || |||||||||||||| ||| |||||||| |||||| |||||||||||||
Sbjct: 91916709 ggtaagcatgggggagccttcactgcggtcctgcaaagttgctgataaagccaaaagggt 91916768
Query: 1026 ggagtcacagttgaagatcttgatccgtcctatgtattccaaccctcctgtcaacggggc 1085
|||||| || |||||||||||||||| |||||| ||||| || ||| ||
Sbjct: 91916769 ggagtcgcatttgaagatcttgatccatcctatctattc-----------tctgcggagc 91916817
Query: 1086 ccggattgcctcgaccatcctgaccagcccggatctgcggcaacaatggttgcaggaagt 1145
|| |||||||| |||||| |||||||||| ||| || | ||||||||||| |||||
Sbjct: 91916818 cctgattgccttgaccattctgaccagcctagatttgtaaaagcaatggttgcaagaagt 91916877
Query: 1146 caagggcatggccgaccgcatcattagcatgaggacccagctggtctccaacctcaagaa 1205
|| | |||||| | | |||||||| ||| |||| | ||||||||||||||
Sbjct: 91916878 gaaagccatggc---ttgtgttattagcatttggattcagcctctttccaacctcaagaa 91916934
Query: 1206 ggagggctcctcccacaactggcagcacatcgttgaccagatcggcatgttttgtttcac 1265
||| | || |||||||| |||||||| || ||| || | | ||||| |||||| | |
Sbjct: 91916935 ggaagacttctcccacagtcggcagcacgtccctgatcaaaccagcatggtttgttcctc 91916994
Query: 1266 aggcataaagcctgaacaggtggagcggctgaccaaggagttctccatctacatgacaaa 1325
||| |||||||| |||||||||||| |||||||||||||| |||||||| |||||||| |
Sbjct: 91916995 agggataaagcccgaacaggtggagtggctgaccaaggaggtctccatccacatgacaca 91917054
Query: 1326 ggatggccgcatctctgtggcaggggtcacctctggcaatgtgggctaccttgcccatgc 1385
|| ||| |||||||| ||||| || || | ||| ||| |||||| | ||||
Sbjct: 91917055 ggtcagccccatctctgcagcaggacacatcttggacaactggggttaccttacgcatga 91917114
Query: 1386 cattcaccaggtcaccaagtaattcccctggtgagaaggaacagagacaaccttcctgtc 1445
||| ||||||||||||||| | | ||||| ||||| ||||||| ||||||| |||||||
Sbjct: 91917115 catctaccaggtcaccaagtgacttccctgatgagagggaacagggacaaccctcctgtc 91917174
Query: 1446 ttcaggctctgctgttgtgagattcgcagggaggaagagagagggtggatggtggtgagc 1505
||||| ||||| ||||||||| || || |||||| ||| ||||| |||||||||| |||
Sbjct: 91917175 ttcagtttctgcagttgtgagactcacatggaggatgagggagggaggatggtggtaagc 91917234
Query: 1506 g 1506
|
Sbjct: 91917235 g 91917235
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 68,726,820
Number of extensions: 460
Number of successful extensions: 460
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 9
Length of query: 2370
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2348
Effective length of database: 2,808,408,574
Effective search space: 6594143331752
Effective search space used: 6594143331752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)