Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071562.1| ubiquitin-conjugating enzyme E2 L3 [Bos taur... 283 4e-76
Alignment gi|NP_001092387.1| ubiquitin/ISG15-conjugating enzyme E2 L6 [Bo... 139 2e-32
Alignment gi|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taur... 85 3e-16
Alignment gi|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taur... 83 1e-15
Alignment gi|XP_002692269.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
Alignment gi|XP_002692264.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
Alignment gi|XP_002692263.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
Alignment gi|XP_002692262.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
Alignment gi|XP_002692261.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
Alignment gi|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 80 1e-14
>ref|NP_001071562.1| ubiquitin-conjugating enzyme E2 L3 [Bos taurus].
Length = 154
Score = 283 bits (725), Expect = 4e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|NP_001092387.1| ubiquitin/ISG15-conjugating enzyme E2 L6 [Bos taurus].
Length = 153
Score = 139 bits (349), Expect = 2e-32
Identities = 66/152 (43%), Positives = 100/152 (65%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS+R+ KELE+++K K RN+ +E N+L W L++P+ PPY+ AFR+ I+FP E
Sbjct: 1 MTASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLLPERPPYNLKAFRLCISFPRE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPN+D G+VCLP+IS +NWK +T+T QV+++L LVN P+P P
Sbjct: 61 YPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 495
+R +LAE+ ++D + F + A+EFT ++G RP
Sbjct: 121 VRLELAEQLTQDPELFDQMAQEFTLQFGVDRP 152
>ref|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taurus].
Length = 147
Score = 85.1 bits (209), Expect = 3e-16
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ + V + +L WQ I+ P + Y G F + ++FP +
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
D+A+ Y D++K+ ++A E+T+KY
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKY 145
>ref|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taurus].
Length = 147
Score = 83.2 bits (204), Expect = 1e-15
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKY 145
>ref|XP_002692269.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like, partial [Bos
taurus].
Length = 151
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP + HPNI+ G +CL +
Sbjct: 33 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDI 92
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 93 LRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 149
>ref|XP_002692264.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP + HPNI+ G +CL +
Sbjct: 45 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDI 104
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 105 LRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 161
>ref|XP_002692263.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP + HPNI+ G +CL +
Sbjct: 45 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDI 104
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 105 LRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 161
>ref|XP_002692262.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP + HPNI+ G +CL +
Sbjct: 45 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDI 104
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 105 LRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 161
>ref|XP_002692261.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP + HPNI+ G +CL +
Sbjct: 45 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDI 104
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 105 LRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 161
>ref|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 147
Score = 79.7 bits (195), Expect = 1e-14
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCL 300
E ++ W+ I+ P++ PY G F + I+FP + HPNI+ G +CL
Sbjct: 27 EDDMFHWEATIMGPNDSPYQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICL 86
Query: 301 PVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
++ ++ W PA +V+ S+ +L+ DP P+ PL ++A Y DR K+ + + E+T+KY
Sbjct: 87 DILRSQ-WSPALIISKVLLSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKY 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 102,323,824
Number of extensions: 2915321
Number of successful extensions: 11840
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 11773
Number of HSP's successfully gapped: 67
Length of query: 865
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 754
Effective length of database: 14,008,606
Effective search space: 10562488924
Effective search space used: 10562488924
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534767.2| PREDICTED: similar to Ubiquitin-conjugating enz... 283 4e-76
Alignment gi|XP_850377.1| PREDICTED: similar to Ubiquitin-conjugating enz... 217 5e-56
Alignment gi|XP_860387.1| PREDICTED: similar to Ubiquitin-conjugating enz... 203 6e-52
Alignment gi|XP_533174.1| PREDICTED: similar to ubiquitin-conjugating enz... 123 8e-28
Alignment gi|XP_851924.1| PREDICTED: similar to Ubiquitin-conjugating enz... 105 3e-23
Alignment gi|XP_859715.1| PREDICTED: similar to ubiquitin-conjugating enz... 85 3e-16
Alignment gi|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enz... 85 3e-16
Alignment gi|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enz... 83 1e-15
Alignment gi|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enz... 83 1e-15
Alignment gi|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enz... 83 1e-15
>ref|XP_534767.2| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) isoform 1 [Canis familiaris].
Length = 154
Score = 283 bits (725), Expect = 4e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_850377.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) [Canis familiaris].
Length = 137
Score = 217 bits (552), Expect = 5e-56
Identities = 111/137 (81%), Positives = 113/137 (82%), Gaps = 7/137 (5%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRI+INFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIKINFPAE 60
Query: 220 -------XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN 378
H NIDEKGQVCLPVISAENWKPATKTDQVIQ LIALVN
Sbjct: 61 YPFKPLKIIQGSLKIIFKTEIYHRNIDEKGQVCLPVISAENWKPATKTDQVIQFLIALVN 120
Query: 379 DPQPEHPLRADLAEEYS 429
DPQP+HPLRADLAEEYS
Sbjct: 121 DPQPKHPLRADLAEEYS 137
>ref|XP_860387.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) isoform 2 [Canis familiaris].
Length = 122
Score = 203 bits (517), Expect = 6e-52
Identities = 98/116 (84%), Positives = 100/116 (86%)
Frame = +1
Query: 154 IVPDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPA 333
++ DNPPYDKGAFRIEINFPAE HPNIDEKGQVCLPVISAENWKPA
Sbjct: 7 LMKDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 66
Query: 334 TKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
TKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 67 TKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 122
>ref|XP_533174.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2L 6 isoform 1
[Canis familiaris].
Length = 153
Score = 123 bits (309), Expect = 8e-28
Identities = 60/152 (39%), Positives = 90/152 (59%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS+R+ KELE ++ R++ D+A++L W L++P+ PPY+ AF + I+FP +
Sbjct: 1 MTASKRVAKELESLQAKLPPYLRDLFSDDADVLVWHVLLLPEKPPYNLKAFHLRISFPED 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPN+ G VCLP+IS ENW P TK QV+++L LVN P P
Sbjct: 61 YPFKPPTVTFTTRIYHPNVGHDGDVCLPIISKENWNPHTKACQVLEALSVLVNRPDLGQP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 495
+R +LA+ ++D + F + A+EFT +YG RP
Sbjct: 121 VRVELADLLTRDPELFNRKAQEFTLQYGVDRP 152
>ref|XP_851924.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) [Canis familiaris].
Length = 86
Score = 105 bits (261), Expect(2) = 3e-23
Identities = 54/60 (90%), Positives = 55/60 (91%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRL KELEEIRK G KNF NIQVDEANLLTWQGLIVPDNPP DKGAFRI+INFPAE
Sbjct: 1 MAASRRL-KELEEIRKYGRKNFCNIQVDEANLLTWQGLIVPDNPPCDKGAFRIKINFPAE 59
Score = 23.9 bits (50), Expect(2) = 3e-23
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 254 RRSITPTSMKRGRSACR 304
+ IT TSMKR RS C+
Sbjct: 70 KTKITRTSMKRDRSVCQ 86
>ref|XP_859715.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2L 6 isoform 1
isoform 3 [Canis familiaris].
Length = 134
Score = 85.1 bits (209), Expect = 3e-16
Identities = 40/103 (38%), Positives = 58/103 (56%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS+R+ KELE ++ R++ D+A++L W L++P+ PPY+ AF + I+FP +
Sbjct: 1 MTASKRVAKELESLQAKLPPYLRDLFSDDADVLVWHVLLLPEKPPYNLKAFHLRISFPED 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQ 348
HPN+ G VCLP+IS ENW P TK Q
Sbjct: 61 YPFKPPTVTFTTRIYHPNVGHDGDVCLPIISKENWNPHTKACQ 103
>ref|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 1, UBC4/5
homolog [Canis familiaris].
Length = 147
Score = 85.1 bits (209), Expect = 3e-16
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ + V + +L WQ I+ P + Y G F + ++FP +
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
D+A+ Y D++K+ ++A E+T+KY
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKY 145
>ref|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 5 [Canis familiaris].
Length = 147
Score = 83.2 bits (204), Expect = 1e-15
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKY 145
>ref|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 4 [Canis familiaris].
Length = 147
Score = 83.2 bits (204), Expect = 1e-15
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKY 145
>ref|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 3 [Canis familiaris].
Length = 147
Score = 83.2 bits (204), Expect = 1e-15
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKY 145
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 106,767,136
Number of extensions: 3006828
Number of successful extensions: 11910
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 11834
Number of HSP's successfully gapped: 43
Length of query: 865
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 753
Effective length of database: 15,140,872
Effective search space: 11401076616
Effective search space used: 11401076616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003338.1| ubiquitin-conjugating enzyme E2 L3 [Homo sapien... 283 4e-76
Alignment gi|NP_004214.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isofor... 150 6e-36
Alignment gi|NP_937826.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isofor... 98 4e-20
Alignment gi|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapien... 86 1e-16
Alignment gi|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [H... 85 3e-16
Alignment gi|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [H... 83 1e-15
Alignment gi|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [H... 82 2e-15
Alignment gi|NP_862821.1| ubiquitin-conjugating enzyme E2 D2 isoform 2 [H... 82 3e-15
Alignment gi|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 81 4e-15
Alignment gi|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 81 4e-15
>ref|NP_003338.1| ubiquitin-conjugating enzyme E2 L3 [Homo sapiens].
Length = 154
Score = 283 bits (725), Expect = 4e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|NP_004214.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 1 [Homo sapiens].
Length = 153
Score = 150 bits (379), Expect = 6e-36
Identities = 72/152 (47%), Positives = 98/152 (64%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS R++KELE+++K RN+ D+AN+L W L++PD PPY AF + I+FP E
Sbjct: 1 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPN+DE GQ+CLP+IS+ENWKP TKT QV+++L LVN P P
Sbjct: 61 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 495
LR DLA+ +++ + F KNAEEFT ++G RP
Sbjct: 121 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRP 152
>ref|NP_937826.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 2 [Homo sapiens].
Length = 87
Score = 97.8 bits (242), Expect = 4e-20
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 265 HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKK 444
HPN+DE GQ+CLP+IS+ENWKP TKT QV+++L LVN P PLR DLA+ +++ +
Sbjct: 10 HPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPEL 69
Query: 445 FCKNAEEFTKKYGEKRP 495
F KNAEEFT ++G RP
Sbjct: 70 FRKNAEEFTLRFGVDRP 86
>ref|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapiens].
Length = 147
Score = 86.3 bits (212), Expect = 1e-16
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ V + +L WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIAHTYKADREKYNRLAREWTQKY 145
>ref|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [Homo sapiens].
Length = 147
Score = 85.1 bits (209), Expect = 3e-16
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ + V + +L WQ I+ P + Y G F + ++FP +
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
D+A+ Y D++K+ ++A E+T+KY
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKY 145
>ref|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [Homo sapiens].
Length = 147
Score = 83.2 bits (204), Expect = 1e-15
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKY 145
>ref|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [Homo sapiens].
Length = 148
Score = 82.4 bits (202), Expect = 2e-15
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + A E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRLAREWTEKY 145
>ref|NP_862821.1| ubiquitin-conjugating enzyme E2 D2 isoform 2 [Homo sapiens].
Length = 118
Score = 81.6 bits (200), Expect = 3e-15
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = +1
Query: 142 WQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAE 318
WQ I+ P++ PY G F + I+FP + HPNI+ G +CL ++ ++
Sbjct: 4 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 63
Query: 319 NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
W PA +V+ S+ +L+ DP P+ PL ++A Y DR+K+ + A E+T+KY
Sbjct: 64 -WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 116
>ref|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 81.3 bits (199), Expect = 4e-15
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + + E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKY 145
>ref|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 81.3 bits (199), Expect = 4e-15
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + + E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKY 145
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 104,715,038
Number of extensions: 2946037
Number of successful extensions: 11362
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 11299
Number of HSP's successfully gapped: 43
Length of query: 865
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 754
Effective length of database: 14,638,160
Effective search space: 11037172640
Effective search space used: 11037172640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086351.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 283 4e-76
Alignment gi|NP_033482.1| ubiquitin-conjugating enzyme E2 L3 [Mus musculu... 283 4e-76
Alignment gi|XP_001475020.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 280 5e-75
Alignment gi|XP_001477949.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 278 2e-74
Alignment gi|XP_001475499.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 275 1e-73
Alignment gi|XP_003085723.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 275 1e-73
Alignment gi|XP_619973.2| PREDICTED: ubiquitin-conjugating enzyme E2 L3-l... 269 7e-72
Alignment gi|XP_922588.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-l... 269 7e-72
Alignment gi|XP_003086739.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 260 4e-69
Alignment gi|XP_003084814.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 258 2e-68
>ref|XP_003086351.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 283 bits (725), Expect = 4e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|NP_033482.1| ubiquitin-conjugating enzyme E2 L3 [Mus musculus].
Length = 154
Score = 283 bits (725), Expect = 4e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_001475020.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 280 bits (715), Expect = 5e-75
Identities = 137/154 (88%), Positives = 137/154 (88%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQ IALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQFFIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_001477949.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 2 [Mus
musculus].
Length = 154
Score = 278 bits (710), Expect = 2e-74
Identities = 136/154 (88%), Positives = 137/154 (88%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQ IALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQFFIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPV+
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVN 154
>ref|XP_001475499.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 275 bits (703), Expect = 1e-73
Identities = 137/154 (88%), Positives = 137/154 (88%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRK GMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWK ATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKLATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_003085723.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 275 bits (703), Expect = 1e-73
Identities = 137/154 (88%), Positives = 137/154 (88%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRK GMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWK ATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKLATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_619973.2| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 1 [Mus
musculus].
Length = 154
Score = 269 bits (688), Expect = 7e-72
Identities = 133/154 (86%), Positives = 133/154 (86%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVD ANLLTWQGLIVPDNPPYDKGAFRIEINF AE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDGANLLTWQGLIVPDNPPYDKGAFRIEINFAAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENW PATKTDQVIQSL AL NDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWMPATKTDQVIQSLTALANDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYG KRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGGKRPVD 154
>ref|XP_922588.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 3 [Mus
musculus].
Length = 154
Score = 269 bits (688), Expect = 7e-72
Identities = 133/154 (86%), Positives = 133/154 (86%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVD ANLLTWQGLIVPDNPPYDKGAFRIEINF AE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDGANLLTWQGLIVPDNPPYDKGAFRIEINFAAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENW PATKTDQVIQSL AL NDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWMPATKTDQVIQSLTALANDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYG KRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGGKRPVD 154
>ref|XP_003086739.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 260 bits (664), Expect = 4e-69
Identities = 131/154 (85%), Positives = 132/154 (85%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRK GMKNF NIQVDEAN T QGLIVPD PPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKYGMKNFCNIQVDEANSWTSQGLIVPDKPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSL ALV+DPQPEHP
Sbjct: 61 YPFKPPKITLKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLTALVSDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_003084814.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 258 bits (658), Expect = 2e-68
Identities = 130/154 (84%), Positives = 131/154 (85%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRK GMKNF NIQVDE N T QGLIVPD PPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKYGMKNFCNIQVDEDNSWTSQGLIVPDKPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSL ALV+DPQPEHP
Sbjct: 61 YPFKPPKITLKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLTALVSDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 88,533,321
Number of extensions: 2454404
Number of successful extensions: 9256
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 9206
Number of HSP's successfully gapped: 48
Length of query: 865
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 755
Effective length of database: 12,313,599
Effective search space: 9296767245
Effective search space used: 9296767245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172062.1| ubiquitin-conjugating enzyme E2 L3 [Sus scro... 283 3e-76
Alignment gi|XP_003353899.1| PREDICTED: ubiquitin/ISG15-conjugating enzym... 144 2e-34
Alignment gi|XP_003122809.2| PREDICTED: ubiquitin/ISG15-conjugating enzym... 144 2e-34
Alignment gi|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 86 8e-17
Alignment gi|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 86 8e-17
Alignment gi|NP_001072142.1| UB2D1 [Sus scrofa]. 85 2e-16
Alignment gi|XP_003124043.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 82 2e-15
Alignment gi|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 81 3e-15
Alignment gi|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 81 3e-15
Alignment gi|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scro... 81 3e-15
>ref|NP_001172062.1| ubiquitin-conjugating enzyme E2 L3 [Sus scrofa].
Length = 154
Score = 283 bits (725), Expect = 3e-76
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 501
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD 154
>ref|XP_003353899.1| PREDICTED: ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 2 [Sus
scrofa].
Length = 153
Score = 144 bits (364), Expect = 2e-34
Identities = 68/152 (44%), Positives = 99/152 (65%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 495
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 152
>ref|XP_003122809.2| PREDICTED: ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 1 [Sus
scrofa].
Length = 153
Score = 144 bits (364), Expect = 2e-34
Identities = 68/152 (44%), Positives = 99/152 (65%)
Frame = +1
Query: 40 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 219
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 60
Query: 220 XXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 399
HPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 120
Query: 400 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 495
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 152
>ref|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2-like [Sus scrofa].
Length = 147
Score = 86.3 bits (212), Expect = 8e-17
Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Frame = +1
Query: 130 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPV 306
++ WQ I+ P++ PY G F + I+FP++ HPNI+ G +CL +
Sbjct: 29 DMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFKPPKIAFTTQIYHPNINRNGNICLDI 88
Query: 307 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
+ +E W PA +V+ S+ +++ DP P+ PL ++A+ Y+KDR+K+ + A E+T+KY
Sbjct: 89 LRSE-WSPALTISKVLLSICSMLCDPNPDDPLVPEIAKIYTKDRRKYDRIAREWTEKY 145
>ref|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D4-like [Sus scrofa].
Length = 147
Score = 86.3 bits (212), Expect = 8e-17
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ V + +L WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR+K+ + A E+T+KY
Sbjct: 120 VPEIAHTYKADREKYNRLAREWTQKY 145
>ref|NP_001072142.1| UB2D1 [Sus scrofa].
Length = 147
Score = 85.1 bits (209), Expect = 2e-16
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++++ + V + +L WQ I+ P + Y G F + ++FP +
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
D+A+ Y D++K+ ++A E+T+KY
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKY 145
>ref|XP_003124043.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 199
Score = 81.6 bits (200), Expect = 2e-15
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = +1
Query: 142 WQGLIV-PDNPPYDKGAFRIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPVISAE 318
WQ I+ P++ PY G F + I+FP + HPNI+ G +CL ++ ++
Sbjct: 85 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 144
Query: 319 NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 480
W PA +V+ S+ +L+ DP P+ PL ++A Y DR+K+ + A E+T+KY
Sbjct: 145 -WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 197
>ref|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 2 [Sus
scrofa].
Length = 147
Score = 81.3 bits (199), Expect = 3e-15
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + + E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKY 145
>ref|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 1 [Sus
scrofa].
Length = 147
Score = 81.3 bits (199), Expect = 3e-15
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + + E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKY 145
>ref|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 147
Score = 81.3 bits (199), Expect = 3e-15
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 46 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEX 222
A +R+ KEL ++ + V + ++ WQ I+ P++ PY G F + I+FP +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 223 XXXXXXXXXXXXXXHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 402
HPNI+ G +CL ++ ++ W PA +V+ S+ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 403 RADLAEEYSKDRKKFCKNAEEFTKKY 480
++A Y DR K+ + + E+T+KY
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKY 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 66,020,313
Number of extensions: 1883255
Number of successful extensions: 7508
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 7471
Number of HSP's successfully gapped: 30
Length of query: 865
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 757
Effective length of database: 8,655,056
Effective search space: 6551877392
Effective search space used: 6551877392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002599
(2597 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 4141 0.0
gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012 281 9e-73
Sscrofa_Chr13 281 9e-73
>Sscrofa_Chr14
|| Length = 153851969
Score = 4141 bits (2089), Expect = 0.0
Identities = 2183/2227 (98%)
Strand = Plus / Minus
Query: 348 agtcatccagtcccttatagcgctggtgaacgacccccagcccgagcacccgctccgggc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53718074 agtcatccagtcccttatagcgctggtgaacgacccccagcccgagcacccgctccgggc 53718015
Query: 408 tgacctagctgaagaatactctaaggaccgtaaaaaattctgtaagaatgctgaagagtt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53718014 tgacctagctgaagaatactctaaggaccgtaaaaaattctgtaagaatgctgaagagtt 53717955
Query: 468 tacaaagaaatatggggaaaagcgacctgtggactaaaatctgccgtgattgattccagc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717954 tacaaagaaatatggggaaaagcgacctgtggactaaaatctgccgtgattgattccagc 53717895
Query: 528 gagtgtgagcagagaccccgagcagtgcattcagacaccccgcaaagcaggactctgtgg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717894 gagtgtgagcagagaccccgagcagtgcattcagacaccccgcaaagcaggactctgtgg 53717835
Query: 588 aaaattgacatgtgccaccgcctggcgtctgcttgtggcagttactaactttctacagtt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717834 aaaattgacatgtgccaccgcctggcgtctgcttgtggcagttactaactttctacagtt 53717775
Query: 648 ttcttaatcagaagtggtctaggtaacctgtaaagaaaggattaaaaatttaagatgttc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717774 ttcttaatcagaagtggtctaggtaacctgtaaagaaaggattaaaaatttaagatgttc 53717715
Query: 708 tagttctgttttctttgttttaaaaatcactgcttcaatctactttaaaagaatggtgtt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717714 tagttctgttttctttgttttaaaaatcactgcttcaatctactttaaaagaatggtgtt 53717655
Query: 768 tcttttcctgtctaaatttatcccaaatcttcaatttatatttagccctaaggtttnnnn 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717654 tcttttcctgtctaaatttatcccaaatcttcaatttatatttagccctaaggtttaaaa 53717595
Query: 828 nnnnnnnnnnnnnnnnnnnggttgtggttcccctcttcccttgccactcccaccttcttg 887
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717594 gaaaaaaaaggaaaaaaaaggttgtggttcccctcttcccttgccactcccaccttcttg 53717535
Query: 888 catttagtttgttttccactcactggctccccaagcccaggcaccgcctcctgcaggaga 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717534 catttagtttgttttccactcactggctccccaagcccaggcaccgcctcctgcaggaga 53717475
Query: 948 tgggacagtgctggcatgtctgctcctctcctccgtgctgcacagcctggtgtgggagtc 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717474 tgggacagtgctggcatgtctgctcctctcctccgtgctgcacagcctggtgtgggagtc 53717415
Query: 1008 agttcagatcttgactctgacttataacatccttttaagaagtttaaaaaacaagcaacc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717414 agttcagatcttgactctgacttataacatccttttaagaagtttaaaaaacaagcaacc 53717355
Query: 1068 acctccacccacccacccctctcccnnnnnnncgccgtggaaagggaggcccagctcttc 1127
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 53717354 acctccacccacccacccctctcccaaaaaaacgccgtggaaagggaggcccagctcttc 53717295
Query: 1128 tgtaaaactctgatcagatgggcagcctctgaagtctgtgttgtgatggaactgtaaccc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717294 tgtaaaactctgatcagatgggcagcctctgaagtctgtgttgtgatggaactgtaaccc 53717235
Query: 1188 agccggcctcctctagggaaaccccccaacaccaggcctgtgatggtcccaggggggccc 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717234 agccggcctcctctagggaaaccccccaacaccaggcctgtgatggtcccaggggggccc 53717175
Query: 1248 gccagccaaaggatgggggactcgtgggaggaatttctcaccagaggctcccgaggccac 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717174 gccagccaaaggatgggggactcgtgggaggaatttctcaccagaggctcccgaggccac 53717115
Query: 1308 aggttggcgcttctccctgcagctattctagaagatgtccgggtcattgcagactaaaac 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717114 aggttggcgcttctccctgcagctattctagaagatgtccgggtcattgcagactaaaac 53717055
Query: 1368 cagagtgtccatttgaaatttgatgctctcctgtcaccgcgctccacccgaccagccaac 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53717054 cagagtgtccatttgaaatttgatgctctcctgtcaccgcgctccacccgaccagccaac 53716995
Query: 1428 gtggctctgggctccctcttgccacctcggtgcagcaggccttcatcagcacggtctgac 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716994 gtggctctgggctccctcttgccacctcggtgcagcaggccttcatcagcacggtctgac 53716935
Query: 1488 cctctggcattctccactgtaccggtacaagcctggggttgctggcacctagctggccct 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716934 cctctggcattctccactgtaccggtacaagcctggggttgctggcacctagctggccct 53716875
Query: 1548 gccttcggagcgtccggccggcccaaccaaggaacaggatggccttctcctccctctgga 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716874 gccttcggagcgtccggccggcccaaccaaggaacaggatggccttctcctccctctgga 53716815
Query: 1608 ctcacggccttcgcagagtcaggatctactcgaagctcgctcagtaatatcctttacatg 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716814 ctcacggccttcgcagagtcaggatctactcgaagctcgctcagtaatatcctttacatg 53716755
Query: 1668 ttttatattgttttgactgccnnnnnnngtagaaataaaaattgaccgtagaatttatca 1727
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 53716754 ttttatattgttttgactgcctttttttgtagaaataaaaattgaccgtagaatttatca 53716695
Query: 1728 tcagatgaacttgtaaagatttgaatgttaatgtcttctcaaagcaagtggcactgtccc 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716694 tcagatgaacttgtaaagatttgaatgttaatgtcttctcaaagcaagtggcactgtccc 53716635
Query: 1788 tgaaatagtagtgagtccttgtcactgacacccagagggagccagtggtccaagcactgg 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716634 tgaaatagtagtgagtccttgtcactgacacccagagggagccagtggtccaagcactgg 53716575
Query: 1848 gtgtcaccaactccacttctgccacggggacttcccctctgggttctcagggggctagat 1907
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 53716574 gtgtcaccaactccacttctgccacggggacttcccttctgggttctcagggggctagat 53716515
Query: 1908 cctgtggagataacttaaactctgctttctgttttagttttccttctataacttgaggtc 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716514 cctgtggagataacttaaactctgctttctgttttagttttccttctataacttgaggtc 53716455
Query: 1968 tttctggggcttgcagacctgtgaggcagcttggcttcatctgtgcagaagtgggtgtgg 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716454 tttctggggcttgcagacctgtgaggcagcttggcttcatctgtgcagaagtgggtgtgg 53716395
Query: 2028 tggtggttaggccttatgaccttgtgtagttgtgcaggcgtggggcctacggtgtgtcat 2087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716394 tggtggttaggccttatgaccttgtgtagttgtgcaggcgtggggcctacggtgtgtcat 53716335
Query: 2088 gaactcagcttccttagtcctaggtacgtgagaggcaggttctggagactcctatgcccc 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716334 gaactcagcttccttagtcctaggtacgtgagaggcaggttctggagactcctatgcccc 53716275
Query: 2148 tgggatggcaggggcgctgggccagcagtccacacctgtctcttcattagcagaaaggtg 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716274 tgggatggcaggggcgctgggccagcagtccacacctgtctcttcattagcagaaaggtg 53716215
Query: 2208 atgatggactttatttcacccacacgcagatttgtaataaaatgccaaattctgtcagat 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716214 atgatggactttatttcacccacacgcagatttgtaataaaatgccaaattctgtcagat 53716155
Query: 2268 gctatccagacaagccaccatctgttctcgttgcttctctgaatccagaaatgttgccat 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716154 gctatccagacaagccaccatctgttctcgttgcttctctgaatccagaaatgttgccat 53716095
Query: 2328 ccttggaaactgtccattgcttcgtatttccaccagcgtaaatctgcccgcctgtcgcac 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716094 ccttggaaactgtccattgcttcgtatttccaccagcgtaaatctgcccgcctgtcgcac 53716035
Query: 2388 cctcccttctccgctcgccactgggaggtcgtccaccctggtcaaagctggcagcccctc 2447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53716034 cctcccttctccgctcgccactgggaggtcgtccaccctggtcaaagctggcagcccctc 53715975
Query: 2448 ggggactcataccctgggcttatcagggcagtgggtggtccccgcntcccactggtgcct 2507
||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct: 53715974 ggggactcataccctggccttatcagggcagtgggtggtccccgctcccacctggtgcct 53715915
Query: 2508 gctccggcagcaggctgaggccgaggagctcttgtgggcagtcacccagccctcgggcag 2567
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 53715914 gctccggcagcaggctgaggccgaggagctcttgtgggcagtcaccaagccctcgggcag 53715855
Query: 2568 gcatgga 2574
|||||||
Sbjct: 53715854 gcatgga 53715848
Score = 371 bits (187), Expect = 1e-99
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 163 gacaaccctccatatgataagggggccttcagaattgaaatcaactttccagcagagtac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53724688 gacaaccctccatatgataagggggccttcagaattgaaatcaactttccagcagagtac 53724629
Query: 223 ccattcaaaccaccgaagatcacgtttaaaacgaagatctatcaccccaacatcgatgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53724628 ccattcaaaccaccgaagatcacgtttaaaacgaagatctatcaccccaacatcgatgaa 53724569
Query: 283 aaggggcaggtctgcctgccggtaattagtgctgaaaactggaagccagcaaccaaaacc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53724568 aaggggcaggtctgcctgccggtaattagtgctgaaaactggaagccagcaaccaaaacc 53724509
Query: 343 gaccaag 349
|||||||
Sbjct: 53724508 gaccaag 53724502
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 65 aggagcttgaagaaatccgcaaatgtgggatgaaaaacttccgtaacatccaggttgatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53751233 aggagcttgaagaaatccgcaaatgtgggatgaaaaacttccgtaacatccaggttgatg 53751174
Query: 125 aagctaatttattgacttggcaagggcttattgttcctg 163
|||||||||||||||||||||||||||||||||||||||
Sbjct: 53751173 aagctaatttattgacttggcaagggcttattgttcctg 53751135
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 2 gcgctgcattctgggccggcagcagcaccagagccaagatggcggccagcaggaggctga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53765933 gcgctgcattctgggccggcagcagcaccagagccaagatggcggccagcaggaggctga 53765874
Query: 62 tgaagg 67
||||||
Sbjct: 53765873 tgaagg 53765868
>gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012
Length = 139712
Score = 281 bits (142), Expect = 9e-73
Identities = 232/262 (88%)
Strand = Plus / Plus
Query: 35 ccaagatggcggccagcaggaggctgatgaaggagcttgaagaaatccgcaaatgtggga 94
||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 24223 ccaagatagcagccagcaggaggctgatgagggagcttgaagaaatcctcaaatgtggga 24282
Query: 95 tgaaaaacttccgtaacatccaggttgatgaagctaatttattgacttggcaagggctta 154
||||||| |||| | |||| |||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 24283 tgaaaaaattcctttacattcaggctgatgaagctaatttattgacttgacaaggactta 24342
Query: 155 ttgttcctgacaaccctccatatgataagggggccttcagaattgaaatcaactttccag 214
|||||||||||| ||||||||||||||||| | ||| || ||||||||| ||||||
Sbjct: 24343 ttgttcctgacacccctccatatgataaggagatctttggagttgaaatcagtgttccag 24402
Query: 215 cagagtacccattcaaaccaccgaagatcacgtttaaaacgaagatctatcaccccaaca 274
|||||||| ||||||||||||| |||||||| |||||||||||| ||| ||||| ||||
Sbjct: 24403 cagagtacgcattcaaaccacccaagatcacatttaaaacgaaggtctctcacctgaaca 24462
Query: 275 tcgatgaaaaggggcaggtctg 296
|| |||||||||||||| ||||
Sbjct: 24463 tcaatgaaaaggggcagatctg 24484
Score = 240 bits (121), Expect = 3e-60
Identities = 340/407 (83%), Gaps = 12/407 (2%)
Strand = Plus / Plus
Query: 303 ggtaattagtgctgaaaactggaagccagcaaccaaaaccgaccaagtcatccagtccct 362
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 24771 ggtaattagtgctgaaaattggaagcccacaaccaaaacccaccaagtcatccagtccct 24830
Query: 363 tatagcgctggtgaacgacccccagcccgagcacccgctccgggctgacctagctgaaga 422
||||| |||||| | ||||||||| | |||| ||| || ||||||||| ||| |||||
Sbjct: 24831 catagcactggtggatgacccccagtctgagcgccc-ctttgggctgacccagcagaaga 24889
Query: 423 atactct-aaggaccgtaaaaaattctgtaagaatgctgaagagtttacaaagaaatatg 481
|| ||| |||||| |||||||||||||| |||| ||||||||||||| ||||||| |
Sbjct: 24890 ttattctaaaggactgtaaaaaattctgtgagaacgctgaagagtttataaagaaagaat 24949
Query: 482 gggaaaag-cgacctgtggactaaaatctgccgtgattgattccagcgagtgtgagcaga 540
|||| ||| |||||||||| |||||| ||||| |||||||||| || |||||||| |
Sbjct: 24950 gggagaagttgacctgtggattaaaatttgccgcgattgattcctgc--atgtgagcata 25007
Query: 541 gaccccgagcagtgcattcagaca----ccccgcaaagcaggactctgtggaaaattgac 596
| | |||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 25008 atctctcagca---cattcagacaacctgcccacaaaacaggactctgtggaaaattgat 25064
Query: 597 atgtgccaccgcctggcgtctgcttgtggcagttactaactttctacagttttcttaatc 656
||| |||| ||||||| || ||| |||||||| |||| |||||||||||||||||| |
Sbjct: 25065 ctgtaccacggcctggcatccacttatggcagttgctaattttctacagttttcttaaac 25124
Query: 657 agaagtggtctaggtaacctgtaaagaaaggattaaaaatttaagat 703
| |||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 25125 aaaagtggtctaggtaacctataaagaaagggttaaaaagttaagat 25171
>Sscrofa_Chr13
|| Length = 218635234
Score = 281 bits (142), Expect = 9e-73
Identities = 232/262 (88%)
Strand = Plus / Minus
Query: 35 ccaagatggcggccagcaggaggctgatgaaggagcttgaagaaatccgcaaatgtggga 94
||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 142104496 ccaagatagcagccagcaggaggctgatgagggagcttgaagaaatcctcaaatgtggga 142104437
Query: 95 tgaaaaacttccgtaacatccaggttgatgaagctaatttattgacttggcaagggctta 154
||||||| |||| | |||| |||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 142104436 tgaaaaaattcctttacattcaggctgatgaagctaatttattgacttgacaaggactta 142104377
Query: 155 ttgttcctgacaaccctccatatgataagggggccttcagaattgaaatcaactttccag 214
|||||||||||| ||||||||||||||||| | ||| || ||||||||| ||||||
Sbjct: 142104376 ttgttcctgacacccctccatatgataaggagatctttggagttgaaatcagtgttccag 142104317
Query: 215 cagagtacccattcaaaccaccgaagatcacgtttaaaacgaagatctatcaccccaaca 274
|||||||| ||||||||||||| |||||||| |||||||||||| ||| ||||| ||||
Sbjct: 142104316 cagagtacgcattcaaaccacccaagatcacatttaaaacgaaggtctctcacctgaaca 142104257
Query: 275 tcgatgaaaaggggcaggtctg 296
|| |||||||||||||| ||||
Sbjct: 142104256 tcaatgaaaaggggcagatctg 142104235
Score = 240 bits (121), Expect = 3e-60
Identities = 340/407 (83%), Gaps = 12/407 (2%)
Strand = Plus / Minus
Query: 303 ggtaattagtgctgaaaactggaagccagcaaccaaaaccgaccaagtcatccagtccct 362
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 142103948 ggtaattagtgctgaaaattggaagcccacaaccaaaacccaccaagtcatccagtccct 142103889
Query: 363 tatagcgctggtgaacgacccccagcccgagcacccgctccgggctgacctagctgaaga 422
||||| |||||| | ||||||||| | |||| ||| || ||||||||| ||| |||||
Sbjct: 142103888 catagcactggtggatgacccccagtctgagcgccc-ctttgggctgacccagcagaaga 142103830
Query: 423 atactct-aaggaccgtaaaaaattctgtaagaatgctgaagagtttacaaagaaatatg 481
|| ||| |||||| |||||||||||||| |||| ||||||||||||| ||||||| |
Sbjct: 142103829 ttattctaaaggactgtaaaaaattctgtgagaacgctgaagagtttataaagaaagaat 142103770
Query: 482 gggaaaag-cgacctgtggactaaaatctgccgtgattgattccagcgagtgtgagcaga 540
|||| ||| |||||||||| |||||| ||||| |||||||||| || |||||||| |
Sbjct: 142103769 gggagaagttgacctgtggattaaaatttgccgcgattgattcctgc--atgtgagcata 142103712
Query: 541 gaccccgagcagtgcattcagaca----ccccgcaaagcaggactctgtggaaaattgac 596
| | |||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 142103711 atctctcagca---cattcagacaacctgcccacaaaacaggactctgtggaaaattgat 142103655
Query: 597 atgtgccaccgcctggcgtctgcttgtggcagttactaactttctacagttttcttaatc 656
||| |||| ||||||| || ||| |||||||| |||| |||||||||||||||||| |
Sbjct: 142103654 ctgtaccacggcctggcatccacttatggcagttgctaattttctacagttttcttaaac 142103595
Query: 657 agaagtggtctaggtaacctgtaaagaaaggattaaaaatttaagat 703
| |||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 142103594 aaaagtggtctaggtaacctataaagaaagggttaaaaagttaagat 142103548
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 80,971,842
Number of extensions: 659
Number of successful extensions: 659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 11
Length of query: 2597
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2575
Effective length of database: 2,808,408,574
Effective search space: 7231652078050
Effective search space used: 7231652078050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)