Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069516.1| chromosome 9 open reading frame 78 [Bos taur... 486 e-137
>ref|NP_001069516.1| chromosome 9 open reading frame 78 [Bos taurus].
Length = 265
Score = 486 bits (1252), Expect = e-137
Identities = 251/289 (86%), Positives = 252/289 (87%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPVTGKTFRRRRA VRLKLEETREVQNLRKRPNG
Sbjct: 1 MPVTGKTFRRRRADSESEEDEQDSEEVRLKLEETREVQNLRKRPNG-------------- 46
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
MKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 47 ----------MKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 96
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAK+TEEMLSNQMLSGIPEVDLGI
Sbjct: 97 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGI 156
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK
Sbjct: 157 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 216
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 217 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,001,099
Number of extensions: 985464
Number of successful extensions: 4972
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4946
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537817.1| PREDICTED: similar to chromosome 9 open reading... 541 e-154
Alignment gi|XP_854305.1| PREDICTED: similar to chromosome 9 open reading... 530 e-151
Alignment gi|XP_860700.1| PREDICTED: similar to cDNA sequence BC005624 is... 157 2e-38
>ref|XP_537817.1| PREDICTED: similar to chromosome 9 open reading frame 78 isoform 2
isoform 1 [Canis familiaris].
Length = 289
Score = 541 bits (1394), Expect = e-154
Identities = 272/289 (94%), Positives = 276/289 (95%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPVTGK+FRRRRA VRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE
Sbjct: 1 MPVTGKSFRRRRADSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAK+TEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAP+RRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPVRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
+EPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 241 DEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 289
>ref|XP_854305.1| PREDICTED: similar to chromosome 9 open reading frame 78 isoform 2
[Canis familiaris].
Length = 289
Score = 530 bits (1366), Expect = e-151
Identities = 265/289 (91%), Positives = 274/289 (94%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPVTGK+FR+RRA VRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE
Sbjct: 1 MPVTGKSFRQRRADSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLY+LPENIRVSSAK+TEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEHEEQKVKPKNAEDCLYKLPENIRVSSAKKTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTN+A+NYVQHNRFYH+ELN P+RRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNIAMNYVQHNRFYHKELNVPVRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
+EPKARPLRVGDTEKPEPERSPPNRK PANEKATDDYHYEKFKKMNRRY
Sbjct: 241 DEPKARPLRVGDTEKPEPERSPPNRKHPANEKATDDYHYEKFKKMNRRY 289
>ref|XP_860700.1| PREDICTED: similar to cDNA sequence BC005624 isoform 2 [Canis
familiaris].
Length = 73
Score = 157 bits (397), Expect = 2e-38
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = +2
Query: 704 MAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD 883
MAVNYVQHNRFYHEELNAP+RRNK+EPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD
Sbjct: 1 MAVNYVQHNRFYHEELNAPVRRNKDEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD 60
Query: 884 YHYEKFKKMNRRY 922
YHYEKFKKMNRRY
Sbjct: 61 YHYEKFKKMNRRY 73
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,945,063
Number of extensions: 1028067
Number of successful extensions: 5112
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5084
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057604.1| chromosome 9 open reading frame 78 [Homo sapien... 535 e-152
>ref|NP_057604.1| chromosome 9 open reading frame 78 [Homo sapiens].
Length = 289
Score = 535 bits (1379), Expect = e-152
Identities = 271/289 (93%), Positives = 272/289 (94%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPV K FRRRR VRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE
Sbjct: 1 MPVVRKIFRRRRGDSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAK+TEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 241 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,908,753
Number of extensions: 991873
Number of successful extensions: 4465
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4448
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659134.1| hypothetical protein LOC227707 [Mus musculus]. 531 e-151
>ref|NP_659134.1| hypothetical protein LOC227707 [Mus musculus].
Length = 289
Score = 531 bits (1369), Expect = e-151
Identities = 268/289 (92%), Positives = 271/289 (93%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
M +TGKTFRRRRA VRLKLEETREVQNLRKRPNGVSA ALLVGEKVQE
Sbjct: 1 MRITGKTFRRRRADSESEEDEQESEEVRLKLEETREVQNLRKRPNGVSAAALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQM TGGMVDMKKLKERGKDK+SEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMATGGMVDMKKLKERGKDKVSEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVE EEQK KPKNAEDCLYELPENIRVSSAK+TEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEQEEQKAKPKNAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 241 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,843,423
Number of extensions: 830132
Number of successful extensions: 3806
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3784
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122268.1| PREDICTED: uncharacterized protein C9orf78-l... 545 e-155
Alignment gi|XP_003122263.1| PREDICTED: uncharacterized protein C9orf78-l... 545 e-155
>ref|XP_003122268.1| PREDICTED: uncharacterized protein C9orf78-like [Sus scrofa].
Length = 289
Score = 545 bits (1405), Expect = e-155
Identities = 276/289 (95%), Positives = 276/289 (95%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPVTGKTFRRRRA VRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE
Sbjct: 1 MPVTGKTFRRRRADSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 241 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 289
>ref|XP_003122263.1| PREDICTED: uncharacterized protein C9orf78-like [Sus scrofa].
Length = 289
Score = 545 bits (1405), Expect = e-155
Identities = 276/289 (95%), Positives = 276/289 (95%)
Frame = +2
Query: 56 MPVTGKTFRRRRAXXXXXXXXXXXXXVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 235
MPVTGKTFRRRRA VRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE
Sbjct: 1 MPVTGKTFRRRRADSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQE 60
Query: 236 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 415
ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE
Sbjct: 61 ETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIE 120
Query: 416 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 595
TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI
Sbjct: 121 TELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKRTEEMLSNQMLSGIPEVDLGI 180
Query: 596 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 775
DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK
Sbjct: 181 DAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNK 240
Query: 776 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 922
EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY
Sbjct: 241 EEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYEKFKKMNRRY 289
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,540,903
Number of extensions: 637250
Number of successful extensions: 3164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3149
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002607
(1061 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 452 e-124
>Sscrofa_Chr01
|| Length = 315321322
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Minus
Query: 834 ggtcccctcccaaccgcaagcgtcctgctaatgagaaggccaccgatgactatcactacg 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303884365 ggtcccctcccaaccgcaagcgtcctgctaatgagaaggccaccgatgactatcactacg 303884306
Query: 894 agaagttcaagaagatgaaccggcggtactgagggaggcagaaggggagcagtgcacagc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303884305 agaagttcaagaagatgaaccggcggtactgagggaggcagaaggggagcagtgcacagc 303884246
Query: 954 ggggtgttaaatagtgtcctccactccctctatccccatgataacaggctgcctggacag 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303884245 ggggtgttaaatagtgtcctccactccctctatccccatgataacaggctgcctggacag 303884186
Query: 1014 aagcctgtgcactgatagcagacggttcccaaaacagatgctgctaac 1061
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303884185 aagcctgtgcactgatagcagacggttcccaaaacagatgctgctaac 303884138
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 400 gatgaagtacatcgagacagagctaaagaagaggaaagggatcgtggaacacgaggaaca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303887962 gatgaagtacatcgagacagagctaaagaagaggaaagggatcgtggaacacgaggaaca 303887903
Query: 460 gaaagtcaagccgaagaacgcggaggactgcctttacgagctgccggagaacatccgggt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303887902 gaaagtcaagccgaagaacgcggaggactgcctttacgagctgccggagaacatccgggt 303887843
Query: 520 ctcctcagcgaagaggacggaggagatgctgtccaaccagatgctgagcggcatccccga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303887842 ctcctcagcgaagaggacggaggagatgctgtccaaccagatgctgagcggcatccccga 303887783
Query: 580 ggtggacctcggcatcga 597
||||||||||||||||||
Sbjct: 303887782 ggtggacctcggcatcga 303887765
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 598 cgctaaaatcaaaaatatcatttccacggaggatgccaaggcccgcctgctggcagagca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303887044 cgctaaaatcaaaaatatcatttccacggaggatgccaaggcccgcctgctggcagagca 303886985
Query: 658 gcagaacaagaagaaggacagcgagacatccttcgtgcccaccaacatggcagtgaatta 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303886984 gcagaacaagaagaaggacagcgagacatccttcgtgcccaccaacatggcagtgaatta 303886925
Query: 718 cgtgcagcacaaccgat 734
|||||||||||||||||
Sbjct: 303886924 cgtgcagcacaaccgat 303886908
Score = 258 bits (130), Expect = 5e-66
Identities = 136/138 (98%)
Strand = Plus / Minus
Query: 1 gtactcagatccaggcgcagcgacgcaggggctagtacgcgggtccggccagactatgcc 60
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 303892736 gtactcagatccaggcgcagcgacgcagaggctagtacgtgggtccggccagactatgcc 303892677
Query: 61 ggtcaccgggaagactttccggcggcgccgggctgactcggagtccgaagaagatgagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303892676 ggtcaccgggaagactttccggcggcgccgggctgactcggagtccgaagaagatgagca 303892617
Query: 121 ggactcagaggaggttcg 138
||||||||||||||||||
Sbjct: 303892616 ggactcagaggaggttcg 303892599
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 735 tttaccacgaggagctcaatgctcccatacggagaaacaaagaagagcccaaagcccgac 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303886806 tttaccacgaggagctcaatgctcccatacggagaaacaaagaagagcccaaagcccgac 303886747
Query: 795 ccttgagagtgggcgacacagagaagccagagcccgagcg 834
||||||||||||||||||||||||||||||||||||||||
Sbjct: 303886746 ccttgagagtgggcgacacagagaagccagagcccgagcg 303886707
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 322 gatcagcgaagaggaggatctccatctggggacgtcgttttccgctgaaaccaaccgaag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303888858 gatcagcgaagaggaggatctccatctggggacgtcgttttccgctgaaaccaaccgaag 303888799
Query: 382 ggatgaggacgccgacatg 400
|||||||||||||||||||
Sbjct: 303888798 ggatgaggacgccgacatg 303888780
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 250 ggatgatccctttcagatgaagacaggtgggatggtggacatgaagaaactaaaagaaag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303889599 ggatgatccctttcagatgaagacaggtgggatggtggacatgaagaaactaaaagaaag 303889540
Query: 310 aggcaaagataag 322
|||||||||||||
Sbjct: 303889539 aggcaaagataag 303889527
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 138 gattaaaactggaggagactcgagaggtacagaacttgagaaagaggcccaacggggtga 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303892246 gattaaaactggaggagactcgagaggtacagaacttgagaaagaggcccaacggggtga 303892187
Query: 198 g 198
|
Sbjct: 303892186 g 303892186
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 197 agtgctgtagccctgctggtgggagagaaggtacaagaagagaccactctagtgg 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303890526 agtgctgtagccctgctggtgggagagaaggtacaagaagagaccactctagtgg 303890472
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,286,647
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 9
Length of query: 1061
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 2,808,413,156
Effective search space: 2920749682240
Effective search space used: 2920749682240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)