Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179583.1| mitochondrial import inner membrane transloc... 711 0.0
Alignment gi|XP_002688909.1| PREDICTED: translocase of inner mitochondria... 711 0.0
>ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos
taurus].
Length = 454
Score = 711 bits (1835), Expect = 0.0
Identities = 364/425 (85%), Positives = 379/425 (89%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG 232
MAAAALR GWCRCPRRC SGVH LS HNLVPLP G+YQ+P PSG+ TLS+SYSSG+RKG
Sbjct: 1 MAAAALRAGWCRCPRRCVGSGVHLLSSHNLVPLPHGSYQLPRPSGELTLSKSYSSGSRKG 60
Query: 233 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI 412
FLSGLLDNIKQELAKNKEMKESIKKFRDEA+KLEESDALQEARRKYRTIESET+RT EVI
Sbjct: 61 FLSGLLDNIKQELAKNKEMKESIKKFRDEAKKLEESDALQEARRKYRTIESETLRTSEVI 120
Query: 413 RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA 592
+KKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGE+LGRTAAFKA
Sbjct: 121 KKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGERLGRTAAFKA 180
Query: 593 LSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHKD 772
LSQGVESVKKEIDESVLGQTGPYRRPERLR LGVVLHKD
Sbjct: 181 LSQGVESVKKEIDESVLGQTGPYRRPERLRKRKEFAGEKFKEEKVFEANEEALGVVLHKD 240
Query: 773 SKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE 952
SKWYQQWK EMKMKYDESDNA IRASRVLTDKVTDLLGGLFSKTEMSE
Sbjct: 241 SKWYQQWKDFRDNNVVFNRFFEMKMKYDESDNAFIRASRVLTDKVTDLLGGLFSKTEMSE 300
Query: 953 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 1132
VLTEILRVDPAFDK+RFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA
Sbjct: 301 VLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 360
Query: 1133 KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGLR 1312
KALGLQFHSRILDID+IDLAMGKMMEQGPVLIITFQAQ+VMVIKNPKG+VVEGDPD+ LR
Sbjct: 361 KALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDPDKVLR 420
Query: 1313 MLYLW 1327
MLY+W
Sbjct: 421 MLYVW 425
>ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog
(yeast) [Bos taurus].
Length = 454
Score = 711 bits (1835), Expect = 0.0
Identities = 364/425 (85%), Positives = 379/425 (89%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG 232
MAAAALR GWCRCPRRC SGVH LS HNLVPLP G+YQ+P PSG+ TLS+SYSSG+RKG
Sbjct: 1 MAAAALRAGWCRCPRRCVGSGVHLLSSHNLVPLPHGSYQLPRPSGELTLSKSYSSGSRKG 60
Query: 233 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI 412
FLSGLLDNIKQELAKNKEMKESIKKFRDEA+KLEESDALQEARRKYRTIESET+RT EVI
Sbjct: 61 FLSGLLDNIKQELAKNKEMKESIKKFRDEAKKLEESDALQEARRKYRTIESETLRTSEVI 120
Query: 413 RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA 592
+KKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGE+LGRTAAFKA
Sbjct: 121 KKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGERLGRTAAFKA 180
Query: 593 LSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHKD 772
LSQGVESVKKEIDESVLGQTGPYRRPERLR LGVVLHKD
Sbjct: 181 LSQGVESVKKEIDESVLGQTGPYRRPERLRKRKEFAGEKFKEEKVFEANEEALGVVLHKD 240
Query: 773 SKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE 952
SKWYQQWK EMKMKYDESDNA IRASRVLTDKVTDLLGGLFSKTEMSE
Sbjct: 241 SKWYQQWKDFRDNNVVFNRFFEMKMKYDESDNAFIRASRVLTDKVTDLLGGLFSKTEMSE 300
Query: 953 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 1132
VLTEILRVDPAFDK+RFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA
Sbjct: 301 VLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 360
Query: 1133 KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGLR 1312
KALGLQFHSRILDID+IDLAMGKMMEQGPVLIITFQAQ+VMVIKNPKG+VVEGDPD+ LR
Sbjct: 361 KALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDPDKVLR 420
Query: 1313 MLYLW 1327
MLY+W
Sbjct: 421 MLYVW 425
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,600,392
Number of extensions: 1021424
Number of successful extensions: 4190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 2
Length of query: 442
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 337
Effective length of database: 14,207,134
Effective search space: 4787804158
Effective search space used: 4787804158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542123.2| PREDICTED: similar to Import inner membrane tra... 701 0.0
>ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit
TIM44, mitochondrial precursor [Canis familiaris].
Length = 454
Score = 701 bits (1810), Expect = 0.0
Identities = 361/425 (84%), Positives = 374/425 (88%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG 232
MAAAAL GGWCRCPRRC SGV FLS HNLVPL GTYQ+ P G+ +SRSYSSGNRKG
Sbjct: 1 MAAAALWGGWCRCPRRCLGSGVQFLSSHNLVPLRHGTYQIRQPGGELPVSRSYSSGNRKG 60
Query: 233 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI 412
FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKY+TIESET+RT EVI
Sbjct: 61 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYKTIESETVRTSEVI 120
Query: 413 RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA 592
+KKLGEITGTVKESLDEVSKSDLGRKIKE VEEAAKTAKQSAESVSKGGEKLG+TAAF+A
Sbjct: 121 KKKLGEITGTVKESLDEVSKSDLGRKIKESVEEAAKTAKQSAESVSKGGEKLGKTAAFRA 180
Query: 593 LSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHKD 772
LSQGVESVKKE+DESVLGQTGPYRRPERLR LGVVLHKD
Sbjct: 181 LSQGVESVKKELDESVLGQTGPYRRPERLRKRKEFSGEKFKEEKVFEPNEEALGVVLHKD 240
Query: 773 SKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE 952
SKWYQQWK EMKMKYDESDNALIRASR LTDKVTDLLGGLFSKTEMSE
Sbjct: 241 SKWYQQWKDFKDNNVVFNRFFEMKMKYDESDNALIRASRALTDKVTDLLGGLFSKTEMSE 300
Query: 953 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 1132
VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA
Sbjct: 301 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 360
Query: 1133 KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGLR 1312
KALGLQFHSRILDIDN+DLAMGKMMEQGPVLIITFQAQLVMVIKNPKG+VVEGDPD+ LR
Sbjct: 361 KALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLR 420
Query: 1313 MLYLW 1327
MLY+W
Sbjct: 421 MLYVW 425
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,732,236
Number of extensions: 1060928
Number of successful extensions: 4469
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4463
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 336
Effective length of database: 15,340,888
Effective search space: 5154538368
Effective search space used: 5154538368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006342.2| mitochondrial import inner membrane translocase... 681 0.0
>ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44
precursor [Homo sapiens].
Length = 452
Score = 681 bits (1756), Expect = 0.0
Identities = 350/426 (82%), Positives = 370/426 (86%), Gaps = 1/426 (0%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLG-TYQMPWPSGQQTLSRSYSSGNRK 229
MAAAALR GWCRCPRRC SG+ FLS HNL P G TYQM P G+ LS+SYSSGNRK
Sbjct: 1 MAAAALRSGWCRCPRRCLGSGIQFLSSHNL---PHGSTYQMRRPGGELPLSKSYSSGNRK 57
Query: 230 GFLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEV 409
GFLSGLLDN+KQELAKNKEMKESIKKFRDEAR+LEESD LQEARRKY+TIESET+RT EV
Sbjct: 58 GFLSGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKTIESETVRTSEV 117
Query: 410 IRKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFK 589
+RKKLGE+TGTVKESL EVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAF+
Sbjct: 118 LRKKLGELTGTVKESLHEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFR 177
Query: 590 ALSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHK 769
ALSQGVESVKKEID+SVLGQTGPYRRP+RLR LGVVLHK
Sbjct: 178 ALSQGVESVKKEIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFEPNEEALGVVLHK 237
Query: 770 DSKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMS 949
DSKWYQQWK EMKMKYDESDNA IRASR LTDKVTDLLGGLFSKTEMS
Sbjct: 238 DSKWYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMS 297
Query: 950 EVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQ 1129
EVLTEILRVDPAFDK+RFL+QCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQ
Sbjct: 298 EVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQ 357
Query: 1130 AKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGL 1309
AKALGLQFHSRILDIDN+DLAMGKMMEQGPVLIITFQAQLVMV++NPKG+VVEGDPD+ L
Sbjct: 358 AKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVL 417
Query: 1310 RMLYLW 1327
RMLY+W
Sbjct: 418 RMLYVW 423
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,739,127
Number of extensions: 1038248
Number of successful extensions: 4261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4246
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 336
Effective length of database: 14,802,980
Effective search space: 4973801280
Effective search space used: 4973801280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035722.2| mitochondrial import inner membrane translocase... 656 0.0
>ref|NP_035722.2| mitochondrial import inner membrane translocase subunit TIM44
precursor [Mus musculus].
Length = 452
Score = 656 bits (1692), Expect = 0.0
Identities = 336/426 (78%), Positives = 362/426 (84%), Gaps = 1/426 (0%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGT-YQMPWPSGQQTLSRSYSSGNRK 229
MAAAALRGGWCRCPRRC SG+ FLS HNL P G+ YQ+ P + TL++SYSSG+RK
Sbjct: 1 MAAAALRGGWCRCPRRCLGSGIQFLSSHNL---PHGSSYQISRPGRELTLTKSYSSGSRK 57
Query: 230 GFLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEV 409
GFLSGLLDNIKQELAKNKEMKESIKKFRDEA+KLEESDALQEARRKY++IESET+RT E
Sbjct: 58 GFLSGLLDNIKQELAKNKEMKESIKKFRDEAKKLEESDALQEARRKYKSIESETVRTSEA 117
Query: 410 IRKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFK 589
I+KKLGE+TGTVKESLDEVSKSDLGRKIKEGVEEAA+TAKQSAESVSK GEKLG+TAAFK
Sbjct: 118 IKKKLGELTGTVKESLDEVSKSDLGRKIKEGVEEAARTAKQSAESVSKSGEKLGKTAAFK 177
Query: 590 ALSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHK 769
A+SQGVESVKKE+DESVLGQTGPYRRPERLR LGVVLHK
Sbjct: 178 AISQGVESVKKELDESVLGQTGPYRRPERLRKRTEFAGAKFKESKVFEANEEALGVVLHK 237
Query: 770 DSKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMS 949
DSKWYQQWK EMKMKYDESDN LIRASR LTDKVTDLLGGLFSKTEMS
Sbjct: 238 DSKWYQQWKDFKDNNVVFNRFFEMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMS 297
Query: 950 EVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQ 1129
EVLTEILRVDP FDK+ FL QCE DIIPN+LEAMISGELDILKDWCYEATYSQLAHPIQQ
Sbjct: 298 EVLTEILRVDPTFDKDHFLHQCETDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQ 357
Query: 1130 AKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGL 1309
AKALG QFHSRILDI N+DLAMGKMMEQGPVLI+TFQAQ+VMVIKN KG+V +GDPD+
Sbjct: 358 AKALGFQFHSRILDISNVDLAMGKMMEQGPVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQ 417
Query: 1310 RMLYLW 1327
RMLY+W
Sbjct: 418 RMLYVW 423
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,967,928
Number of extensions: 867224
Number of successful extensions: 3378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3375
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 338
Effective length of database: 12,493,815
Effective search space: 4222909470
Effective search space used: 4222909470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123248.1| PREDICTED: mitochondrial import inner membra... 752 0.0
>ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 [Sus scrofa].
Length = 454
Score = 752 bits (1942), Expect = 0.0
Identities = 386/425 (90%), Positives = 389/425 (91%)
Frame = +2
Query: 53 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG 232
MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG
Sbjct: 1 MAAAALRGGWCRCPRRCFSSGVHFLSRHNLVPLPLGTYQMPWPSGQQTLSRSYSSGNRKG 60
Query: 233 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI 412
FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI
Sbjct: 61 FLSGLLDNIKQELAKNKEMKESIKKFRDEARKLEESDALQEARRKYRTIESETMRTGEVI 120
Query: 413 RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA 592
RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA
Sbjct: 121 RKKLGEITGTVKESLDEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFKA 180
Query: 593 LSQGVESVKKEIDESVLGQTGPYRRPERLRXXXXXXXXXXXXXXXXXXXXXXLGVVLHKD 772
LSQGVESVKKEIDESVLGQTGPYRRPERLR LGVVLHKD
Sbjct: 181 LSQGVESVKKEIDESVLGQTGPYRRPERLRKRKEFAGEKFKEEKVFEANEEALGVVLHKD 240
Query: 773 SKWYQQWKXXXXXXXXXXXXXEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE 952
SKWYQQWK EMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE
Sbjct: 241 SKWYQQWKDFRDNNVVFNRFFEMKMKYDESDNALIRASRVLTDKVTDLLGGLFSKTEMSE 300
Query: 953 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 1132
VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA
Sbjct: 301 VLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQA 360
Query: 1133 KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGQVVEGDPDQGLR 1312
KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKG+VVEGDPD+ LR
Sbjct: 361 KALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLR 420
Query: 1313 MLYLW 1327
MLY+W
Sbjct: 421 MLYVW 425
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,488,204
Number of extensions: 656347
Number of successful extensions: 2633
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2623
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,804,438
Effective search space: 2993508920
Effective search space used: 2993508920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002611
(1328 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 303 1e-79
>Sscrofa_Chr02
|| Length = 162569375
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 450 agagtctcgacgaagtcagtaaaagtgaccttggccggaaaatcaaggagggtgtggaag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71680325 agagtctcgacgaagtcagtaaaagtgaccttggccggaaaatcaaggagggtgtggaag 71680384
Query: 510 aagcagccaagaccgccaagcagtcggctgagtcggtgtccaaaggtggggagaagcttg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71680385 aagcagccaagaccgccaagcagtcggctgagtcggtgtccaaaggtggggagaagcttg 71680444
Query: 570 gcaggactgccgccttcaaagccctctcgcagg 602
|||||||||||||||||||||||||||||||||
Sbjct: 71680445 gcaggactgccgccttcaaagccctctcgcagg 71680477
Score = 287 bits (145), Expect = 8e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 598 gcagggggtggagtctgtgaagaaggagatcgacgagagcgtcctggggcagaccgggcc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71681415 gcagggggtggagtctgtgaagaaggagatcgacgagagcgtcctggggcagaccgggcc 71681474
Query: 658 ctaccggcggcccgagcggctcaggaagaggaaagagttcgcgggagagaaattcaagga 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71681475 ctaccggcggcccgagcggctcaggaagaggaaagagttcgcgggagagaaattcaagga 71681534
Query: 718 agagaaagtgtttgaggccaacgag 742
|||||||||||||||||||||||||
Sbjct: 71681535 agagaaagtgtttgaggccaacgag 71681559
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 920 gggggcctgttctcgaagactgagatgtcagaggtgctcacggagatcctgcgagtggac 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71682845 gggggcctgttctcgaagactgagatgtcagaggtgctcacggagatcctgcgagtggac 71682904
Query: 980 cccgccttcgacaaggagcgcttcctgcagcagtgcgagaatgacatcatccccaatgtc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71682905 cccgccttcgacaaggagcgcttcctgcagcagtgcgagaatgacatcatccccaatgtc 71682964
Query: 1040 ctggagg 1046
|||||||
Sbjct: 71682965 ctggagg 71682971
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 97 gagatgcttcagcagcggagtccattttctatccagacacaacctagtgccactccccct 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71674446 gagatgcttcagcagcggagtccattttctatccagacacaacctagtgccactccccct 71674505
Query: 157 gggtacctatcagatgccctggccaagtggacagcagaccctg 199
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71674506 gggtacctatcagatgccctggccaagtggacagcagaccctg 71674548
Score = 202 bits (102), Expect = 4e-49
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1187 ctggccatgggcaagatgatggagcaggggcccgtgctgatcatcaccttccaggcccag 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71687121 ctggccatgggcaagatgatggagcaggggcccgtgctgatcatcaccttccaggcccag 71687180
Query: 1247 ctggtgatggtgatcaagaaccccaaaggccaagtggttgagggcgaccc 1296
|||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 71687181 ctggtgatggtgatcaagaaccccaaaggcgaggtggttgagggcgaccc 71687230
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 828 ggttctttgagatgaagatgaaatacgacgaaagtgacaatgccctcattcgggcgtccc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71682656 ggttctttgagatgaagatgaaatacgacgaaagtgacaatgccctcattcgggcgtccc 71682715
Query: 888 gcgtgctgaccgacaaggtcacagacttgctggg 921
||||||||||||||||||||||||||||||||||
Sbjct: 71682716 gcgtgctgaccgacaaggtcacagacttgctggg 71682749
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 2 gggtgacgccatcggatcgcgctgcgagaaggtgatacgggatcctccagcatggcggcg 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 71672214 gggtgacgccatcggatcgcgctgcgagaaggtcatacgggatcctccagcatggcggcg 71672273
Query: 62 gcggcgctgcggggaggctggtgccgctgcccgcgg 97
||||||||||||||||||||||||||||||||||||
Sbjct: 71672274 gcggcgctgcggggaggctggtgccgctgcccgcgg 71672309
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1097 acctacagccagctggcccacccaatccagcaggccaaggccctgggcctccagttccac 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71686520 acctacagccagctggcccacccaatccagcaggccaaggccctgggcctccagttccac 71686579
Query: 1157 tcccgcatcctggacatcgacaatatcgat 1186
||||||||||||||||||||||||||||||
Sbjct: 71686580 tcccgcatcctggacatcgacaatatcgat 71686609
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 742 ggaggcgctgggggtcgtgctgcacaaggactccaagtggtatcaacagtggaaggactt 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71681885 ggaggcgctgggggtcgtgctgcacaaggactccaagtggtatcaacagtggaaggactt 71681944
Query: 802 cagggacaacaatgtggtgttcaaccg 828
|||||||||||||||||||||||||||
Sbjct: 71681945 cagggacaacaatgtggtgttcaaccg 71681971
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 371 agaaccattgaatcagaaaccatgcggacgggcgaggtgatcaggaagaagctgggggag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71679620 agaaccattgaatcagaaaccatgcggacgggcgaggtgatcaggaagaagctgggggag 71679679
Query: 431 atcacaggcaccgtgaaggag 451
|||||||||||||||||||||
Sbjct: 71679680 atcacaggcaccgtgaaggag 71679700
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 199 gtccagatcctattcttctggaaataggaaaggctttctctccggcttgctagataacat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71678153 gtccagatcctattcttctggaaataggaaaggctttctctccggcttgctagataacat 71678212
Query: 259 caaacaagaattagcc 274
||||||||||||||||
Sbjct: 71678213 caaacaagaattagcc 71678228
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 308 ttccgagatgaggccagaaagctggaagagtctgatgcactccaggaagccaggaggaaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71678262 ttccgagatgaggccagaaagctggaagagtctgatgcactccaggaagccaggaggaaa 71678321
Query: 368 tac 370
|||
Sbjct: 71678322 tac 71678324
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1044 aggctatgatttctggagagctcgacattctcaaagactggtgctatgaagct 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71684354 aggctatgatttctggagagctcgacattctcaaagactggtgctatgaagct 71684406
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,833,799
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 13
Length of query: 1328
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1307
Effective length of database: 2,808,413,156
Effective search space: 3670595994892
Effective search space used: 3670595994892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)