Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029885.1| actin-related protein 2/3 complex subunit 2 ... 587 e-168
Alignment gi|XP_001253197.1| PREDICTED: actin related protein 2/3 complex... 145 7e-35
>ref|NP_001029885.1| actin-related protein 2/3 complex subunit 2 [Bos taurus].
Length = 300
Score = 587 bits (1513), Expect = e-168
Identities = 292/297 (98%), Positives = 294/297 (98%)
Frame = +2
Query: 134 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 313
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 314 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 493
LKFYKELQAHGADELLKRVYGS+LV PESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
Sbjct: 61 LKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 120
Query: 494 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 673
FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
Sbjct: 121 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 180
Query: 674 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 853
FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
Sbjct: 181 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 240
Query: 854 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 241 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 297
>ref|XP_001253197.1| PREDICTED: actin related protein 2/3 complex subunit 2-like [Bos
taurus].
Length = 103
Score = 145 bits (366), Expect = 7e-35
Identities = 69/72 (95%), Positives = 70/72 (97%)
Frame = +2
Query: 809 VLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE 988
VLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE
Sbjct: 29 VLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE 88
Query: 989 KKEMKTIRGRRF 1024
KKEMKTI G+ F
Sbjct: 89 KKEMKTITGKTF 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,879,374
Number of extensions: 1209715
Number of successful extensions: 3732
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3726
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536066.2| PREDICTED: similar to actin related protein 2/3... 544 e-155
>ref|XP_536066.2| PREDICTED: similar to actin related protein 2/3 complex subunit 2
[Canis familiaris].
Length = 295
Score = 544 bits (1401), Expect = e-155
Identities = 270/276 (97%), Positives = 271/276 (98%)
Frame = +2
Query: 197 AAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYG 376
AA NKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYG
Sbjct: 17 AAFFNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYG 76
Query: 377 SFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENR 556
SFLV PESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENR
Sbjct: 77 SFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENR 136
Query: 557 AVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFS 736
AVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFS
Sbjct: 137 AVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFS 196
Query: 737 HREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAY 916
HREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAY
Sbjct: 197 HREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAY 256
Query: 917 IHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
IHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 257 IHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,948,249
Number of extensions: 1231760
Number of successful extensions: 3935
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3934
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005722.1| actin-related protein 2/3 complex subunit 2 [Ho... 588 e-168
Alignment gi|NP_690601.1| actin-related protein 2/3 complex subunit 2 [Ho... 588 e-168
>ref|NP_005722.1| actin-related protein 2/3 complex subunit 2 [Homo sapiens].
Length = 300
Score = 588 bits (1516), Expect = e-168
Identities = 293/297 (98%), Positives = 294/297 (98%)
Frame = +2
Query: 134 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 313
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 314 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 493
LKFYKELQAHGADELLKRVYGSFLV PESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
Sbjct: 61 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 120
Query: 494 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 673
FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
Sbjct: 121 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 180
Query: 674 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 853
FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
Sbjct: 181 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 240
Query: 854 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 241 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 297
>ref|NP_690601.1| actin-related protein 2/3 complex subunit 2 [Homo sapiens].
Length = 300
Score = 588 bits (1516), Expect = e-168
Identities = 293/297 (98%), Positives = 294/297 (98%)
Frame = +2
Query: 134 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 313
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 314 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 493
LKFYKELQAHGADELLKRVYGSFLV PESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
Sbjct: 61 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 120
Query: 494 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 673
FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
Sbjct: 121 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 180
Query: 674 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 853
FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
Sbjct: 181 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 240
Query: 854 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 241 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 297
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,960,507
Number of extensions: 1200165
Number of successful extensions: 3990
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3988
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083987.1| actin-related protein 2/3 complex subunit 2 [Mu... 585 e-167
>ref|NP_083987.1| actin-related protein 2/3 complex subunit 2 [Mus musculus].
Length = 300
Score = 585 bits (1508), Expect = e-167
Identities = 291/297 (97%), Positives = 293/297 (98%)
Frame = +2
Query: 134 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 313
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 314 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 493
LKFYKELQAHGADELLKRVYGSFLV PE GYNVSLLYDLENLPASKDSIVHQAGMLKRNC
Sbjct: 61 LKFYKELQAHGADELLKRVYGSFLVNPEPGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 120
Query: 494 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 673
FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
Sbjct: 121 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 180
Query: 674 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 853
FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNA+ARDNT
Sbjct: 181 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNATARDNT 240
Query: 854 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 241 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,928,803
Number of extensions: 1006010
Number of successful extensions: 3119
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3118
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177168.1| actin-related protein 2/3 complex subunit 2 ... 590 e-169
>ref|NP_001177168.1| actin-related protein 2/3 complex subunit 2 [Sus scrofa].
Length = 300
Score = 590 bits (1521), Expect = e-169
Identities = 294/297 (98%), Positives = 295/297 (99%)
Frame = +2
Query: 134 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 313
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 314 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 493
LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
Sbjct: 61 LKFYKELQAHGADELLKRVYGSFLVTPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC 120
Query: 494 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 673
FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
Sbjct: 121 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV 180
Query: 674 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 853
FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
Sbjct: 181 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT 240
Query: 854 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIRGRRF 1024
INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTI G+ F
Sbjct: 241 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTF 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,201,145
Number of extensions: 822243
Number of successful extensions: 2323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2321
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002617
(1252 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 381 e-103
>Sscrofa_Chr15
|| Length = 157681621
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 399 caggctataatgtctctttgctctacgaccttgaaaatcttcctgcgtccaaggattcca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133389905 caggctataatgtctctttgctctacgaccttgaaaatcttcctgcgtccaaggattcca 133389846
Query: 459 tcgtgcatcaggctggcatgttgaaacgaaactgttttgcctctgtcttcgagaaatact 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133389845 tcgtgcatcaggctggcatgttgaaacgaaactgttttgcctctgtcttcgagaaatact 133389786
Query: 519 tccaattccaagaagagggcaaggaaggagagaacagagcagttatccattatagggatg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133389785 tccaattccaagaagagggcaaggaaggagagaacagagcagttatccattatagggatg 133389726
Query: 579 atgagaccatgt 590
||||||||||||
Sbjct: 133389725 atgagaccatgt 133389714
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 679 gcaggagttcaaagaaggccgcagagccagccacacagccccacaggtcctttttagcca 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133382705 gcaggagttcaaagaaggccgcagagccagccacacagccccacaggtcctttttagcca 133382646
Query: 739 cagggaaccgcctctggagctaaaagacactgatgccgccgtgggcgacaacatcggcta 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133382645 cagggaaccgcctctggagctaaaagacactgatgccgccgtgggcgacaacatcggcta 133382586
Query: 799 cattaccttcg 809
|||||||||||
Sbjct: 133382585 cattaccttcg 133382575
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 239 gcagattttgatggagtcctctatcatatttcaaatcctaatggagacaaaacgaaagta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133366267 gcagattttgatggagtcctctatcatatttcaaatcctaatggagacaaaacgaaagta 133366326
Query: 299 atggtcagtatttctttgaaattctacaaggaacttcaggcacatggtgctgatgag 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133366327 atggtcagtatttctttgaaattctacaaggaacttcaggcacatggtgctgatgag 133366383
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 239 gcagattttgatggagtcctctatcatatttcaaatcctaatggagacaaaacgaaagta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133422806 gcagattttgatggagtcctctatcatatttcaaatcctaatggagacaaaacgaaagta 133422865
Query: 299 atggtcagtatttctttgaaattctacaaggaacttcaggcacatggtgctgatgag 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133422866 atggtcagtatttctttgaaattctacaaggaacttcaggcacatggtgctgatgag 133422922
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 909 aggcctatattcacacacgtatgcgggcaaaaacatctgacttcctcaaggtgctgaacc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133380363 aggcctatattcacacacgtatgcgggcaaaaacatctgacttcctcaaggtgctgaacc 133380304
Query: 969 gtgcacgcccagatgccgagaaaaaagaaatgaaaacaatc 1009
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 133380303 gtgcacgcccagatgccgagaaaaaagaaatgaaaacaatc 133380263
Score = 196 bits (99), Expect = 2e-47
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 809 gtgctgttccctcgccacaccaatgccagtgctcgggacaataccatcaacctgatccac 868
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133381044 gtgctcttccctcgccacaccaatgccagtgctcgggacaataccatcaacctgatccac 133380985
Query: 869 acgttccgggactacctgcactaccacatcaagtgctcgaagg 911
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133380984 acgttccgggactacctgcactaccacatcaagtgctcgaagg 133380942
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 589 gtatgttgagtctaaaaaggacagagtcacagtagtcttcagcacagtgtttaaggatga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133388711 gtatgttgagtctaaaaaggacagagtcacagtagtcttcagcacagtgtttaaggatga 133388652
Query: 649 cgacgatgtggtcattggaaaggtgttcatgcagg 683
|||||||||||||||||||||||||||||||||||
Sbjct: 133388651 cgacgatgtggtcattggaaaggtgttcatgcagg 133388617
Score = 178 bits (90), Expect = 5e-42
Identities = 194/222 (87%), Gaps = 5/222 (2%)
Strand = Plus / Minus
Query: 1011 ggggaagacgttttcatcccgctaactcttgggaacgggaagaagaaagcgaccgccggc 1070
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct: 133377462 ggggaagacgttttcatcccgctaactcttgggaacgggaag-aggaagcgaccggcggc 133377404
Query: 1071 tgaaggcttggagaactgctactggataatcgtaacttttaaggtt-cacctccttccgg 1129
|||||||| | ||| |||||||||||||||||| ||||||| ||| ||||| |||| ||
Sbjct: 133377403 tgaaggctggaagacttgctactggataatcgtagcttttaatgttgcacct-cttcagg 133377345
Query: 1130 ttcttaagggaatccccgttttggttcccttttgaaaccctttggaaaa-aatcgtcaaa 1188
||||||||||| || ||||||||||||| ||||| | | ||||||||| |||| | ||
Sbjct: 133377344 ttcttaagggattctccgttttggttccattttgtacacgtttggaaaataatc-tgcaa 133377286
Query: 1189 aaacaacctgggcttgcaaggatttcagggttcccaagaatt 1230
|||| | ||| ||||||||||| |||| ||||||||||||||
Sbjct: 133377285 aaacgagctgtgcttgcaaggacttcatggttcccaagaatt 133377244
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 123 cagccgccgccatgatcctgctggaggtgaacaaccgcatcatcgaggagacgctcgcgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133356138 cagccgccgccatgatcctgctggaggtgaacaaccgcatcatcgaggagacgctcgcgc 133356197
Query: 183 tcaagttcgagaacgcggccgccgg 207
|||||||||||||||||||||||||
Sbjct: 133356198 tcaagttcgagaacgcggccgccgg 133356222
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 gagagcggaagtggccggctggagccgggggctgggcggggaccgagcttgtcggtga 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133355806 gagagcggaagtggccggctggagccgggggctgggcggggaccgagcttgtcggtga 133355863
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 207 gaaataaaccagaagctgtagaagtaacatttgcag 242
||||||||||||||||||||||||||||||||||||
Sbjct: 133364131 gaaataaaccagaagctgtagaagtaacatttgcag 133364166
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 207 gaaataaaccagaagctgtagaagtaacatttgcag 242
||||||||||||||||||||||||||||||||||||
Sbjct: 133420670 gaaataaaccagaagctgtagaagtaacatttgcag 133420705
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,233,559
Number of extensions: 335
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 12
Length of query: 1252
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1231
Effective length of database: 2,808,413,156
Effective search space: 3457156595036
Effective search space used: 3457156595036
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)