Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029633.1| transmembrane protein 106C [Bos taurus]. 411 e-115
Alignment gi|NP_001029509.1| transmembrane protein 106B [Bos taurus]. 197 1e-50
Alignment gi|NP_001014870.1| transmembrane protein 106A [Bos taurus]. 113 4e-25
>ref|NP_001029633.1| transmembrane protein 106C [Bos taurus].
Length = 249
Score = 411 bits (1056), Expect = e-115
Identities = 208/250 (83%), Positives = 221/250 (88%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGS+HS +AH P KRRKADD E+ LAEREQ+EAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSRHSTYAHRPFSKRRKADDTEDSLAEREQQEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
P EQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 P-EQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTF++Q SLVILAITATLKIRNSNFY VAVTSLSS+VQYMNTVVGSY T+N+SLIPPR
Sbjct: 120 VKVTFDEQRSLVILAITATLKIRNSNFYSVAVTSLSSEVQYMNTVVGSYTTTNISLIPPR 179
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SEHLVNFTAKAEMGGP+SYVYFFCTLP I VHN+VVF+RTSVKISYIGH+TQSSLETHHY
Sbjct: 180 SEHLVNFTAKAEMGGPYSYVYFFCTLPYIGVHNVVVFVRTSVKISYIGHVTQSSLETHHY 239
Query: 801 VDCGANSTAV 830
VDCG NSTAV
Sbjct: 240 VDCGVNSTAV 249
>ref|NP_001029509.1| transmembrane protein 106B [Bos taurus].
Length = 275
Score = 197 bits (502), Expect = 1e-50
Identities = 100/214 (46%), Positives = 135/214 (63%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ Q + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
+++QVQ+ TV+G +N++ I P +++T + SY++ FCTL I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITSIGPLDMKQIDYTVPTVIAEEMSYMFDFCTLLTIKVHNI 225
Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
V+ M+ +V +Y GH Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259
>ref|NP_001014870.1| transmembrane protein 106A [Bos taurus].
Length = 261
Score = 113 bits (282), Expect = 4e-25
Identities = 66/210 (31%), Positives = 107/210 (50%)
Frame = +3
Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
P G +TC TCQG+G IP E +LVALIP+ DQRL+P+ TK
Sbjct: 46 PCERAAGAGFVTCPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVSICLVT 105
Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
FFLFP ++ V G+ T ++ V L IT+ L I N+N+ P+ VT L+ +
Sbjct: 106 SSLIIFFLFPRTIAVQPVGLN--SSTVATDEANVYLNITSILNISNNNYCPITVTQLTIE 163
Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
V +++ VVG S + I P + + + + Y CT +I VH++++++
Sbjct: 164 VLHLSLVVGQVSHSLLLHIGPLASEQMFYAVTNRIND--ENTYKICTWLEIKVHHVLLYI 221
Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
+ ++ SY+ Q +++ YVDC N++
Sbjct: 222 QGTLTYSYLSRSEQLVFQSYEYVDCRGNTS 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,203,479
Number of extensions: 1416286
Number of successful extensions: 4654
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4637
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534825.2| PREDICTED: hypothetical protein XP_534825 isofo... 427 e-120
Alignment gi|XP_863768.1| PREDICTED: hypothetical protein XP_858675 isofo... 427 e-120
Alignment gi|XP_851445.1| PREDICTED: hypothetical protein XP_846352 isofo... 427 e-120
Alignment gi|XP_863835.1| PREDICTED: hypothetical protein XP_858742 isofo... 385 e-107
Alignment gi|XP_863815.1| PREDICTED: hypothetical protein XP_858722 isofo... 385 e-107
Alignment gi|XP_863790.1| PREDICTED: hypothetical protein XP_858697 isofo... 369 e-102
Alignment gi|XP_539439.2| PREDICTED: hypothetical protein XP_539439 isofo... 199 3e-51
Alignment gi|XP_542765.2| PREDICTED: hypothetical protein XP_542765 [Cani... 190 3e-48
Alignment gi|XP_862091.1| PREDICTED: hypothetical protein XP_856998 isofo... 146 3e-35
Alignment gi|XP_862060.1| PREDICTED: hypothetical protein XP_856967 isofo... 146 3e-35
>ref|XP_534825.2| PREDICTED: hypothetical protein XP_534825 isoform 1 [Canis
familiaris].
Length = 249
Score = 427 bits (1099), Expect = e-120
Identities = 216/250 (86%), Positives = 225/250 (90%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249
>ref|XP_863768.1| PREDICTED: hypothetical protein XP_858675 isoform 3 [Canis
familiaris].
Length = 249
Score = 427 bits (1099), Expect = e-120
Identities = 216/250 (86%), Positives = 225/250 (90%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249
>ref|XP_851445.1| PREDICTED: hypothetical protein XP_846352 isoform 2 [Canis
familiaris].
Length = 249
Score = 427 bits (1099), Expect = e-120
Identities = 216/250 (86%), Positives = 225/250 (90%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249
>ref|XP_863835.1| PREDICTED: hypothetical protein XP_858742 isoform 6 [Canis
familiaris].
Length = 230
Score = 385 bits (990), Expect = e-107
Identities = 201/250 (80%), Positives = 207/250 (82%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 221 VDCGANSTAV 230
>ref|XP_863815.1| PREDICTED: hypothetical protein XP_858722 isoform 5 [Canis
familiaris].
Length = 230
Score = 385 bits (990), Expect = e-107
Identities = 201/250 (80%), Positives = 207/250 (82%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 221 VDCGANSTAV 230
>ref|XP_863790.1| PREDICTED: hypothetical protein XP_858697 isoform 4 [Canis
familiaris].
Length = 222
Score = 369 bits (948), Expect = e-102
Identities = 193/242 (79%), Positives = 199/242 (82%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS A P CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 60 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220
Query: 801 VD 806
VD
Sbjct: 221 VD 222
>ref|XP_539439.2| PREDICTED: hypothetical protein XP_539439 isoform 1 [Canis
familiaris].
Length = 275
Score = 199 bits (507), Expect = 3e-51
Identities = 102/214 (47%), Positives = 135/214 (63%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ Q V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
+++QVQ+ TV+G +N++ I P +++T + SY+Y FCTL I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYMYDFCTLMSIKVHNI 225
Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
V+ M+ +V +Y GH Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259
>ref|XP_542765.2| PREDICTED: hypothetical protein XP_542765 [Canis familiaris].
Length = 346
Score = 190 bits (482), Expect = 3e-48
Identities = 102/219 (46%), Positives = 133/219 (60%), Gaps = 5/219 (2%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 99 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 158
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSL-----VILAITATLKIRNSNFYP 527
FFLFP S+ G+K V +K S+ V L IT TL I N+N+Y
Sbjct: 159 CLLLSGLAVFFLFPRSIDAKYIGVKSAYVICSKAYSIKKKHMVYLNITNTLNITNNNYYS 218
Query: 528 VAVTSLSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDI 707
V V ++++QVQ TV+G +N++ I P +++T + SY+Y FCTL I
Sbjct: 219 VEVENITAQVQLSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYMYDFCTLISI 278
Query: 708 LVHNIVVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
VHNIV+ M+ +V +Y GH Q S E + YVDCG N+T
Sbjct: 279 KVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 317
>ref|XP_862091.1| PREDICTED: hypothetical protein XP_856998 isoform 4 [Canis
familiaris].
Length = 211
Score = 146 bits (369), Expect = 3e-35
Identities = 76/166 (45%), Positives = 103/166 (62%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ Q V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYV 680
+++QVQ+ TV+G +N++ I P +++T + SY+
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYM 211
>ref|XP_862060.1| PREDICTED: hypothetical protein XP_856967 isoform 3 [Canis
familiaris].
Length = 211
Score = 146 bits (369), Expect = 3e-35
Identities = 76/166 (45%), Positives = 103/166 (62%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ Q V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYV 680
+++QVQ+ TV+G +N++ I P +++T + SY+
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYM 211
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,224,915
Number of extensions: 1454464
Number of successful extensions: 4600
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4572
Number of HSP's successfully gapped: 11
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137314.1| transmembrane protein 106C isoform a [Homo s... 419 e-117
Alignment gi|NP_076961.1| transmembrane protein 106C isoform a [Homo sapi... 419 e-117
Alignment gi|NP_001137315.1| transmembrane protein 106C isoform b [Homo s... 379 e-105
Alignment gi|NP_001137313.1| transmembrane protein 106C isoform b [Homo s... 379 e-105
Alignment gi|NP_001127704.1| transmembrane protein 106B [Homo sapiens]. 204 1e-52
Alignment gi|NP_060844.2| transmembrane protein 106B [Homo sapiens]. 204 1e-52
Alignment gi|NP_659478.1| transmembrane protein 106A [Homo sapiens]. 124 1e-28
>ref|NP_001137314.1| transmembrane protein 106C isoform a [Homo sapiens].
Length = 250
Score = 419 bits (1077), Expect = e-117
Identities = 208/250 (83%), Positives = 220/250 (88%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSA A P SC+R++ DDR+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTVV +Y+T+NVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SE LVNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240
Query: 801 VDCGANSTAV 830
VDCG NSTA+
Sbjct: 241 VDCGGNSTAI 250
>ref|NP_076961.1| transmembrane protein 106C isoform a [Homo sapiens].
Length = 250
Score = 419 bits (1077), Expect = e-117
Identities = 208/250 (83%), Positives = 220/250 (88%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSA A P SC+R++ DDR+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTVV +Y+T+NVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SE LVNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240
Query: 801 VDCGANSTAV 830
VDCG NSTA+
Sbjct: 241 VDCGGNSTAI 250
>ref|NP_001137315.1| transmembrane protein 106C isoform b [Homo sapiens].
Length = 231
Score = 379 bits (974), Expect = e-105
Identities = 194/250 (77%), Positives = 203/250 (81%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSA A P SC+R++ DDR+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTV
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
VNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221
Query: 801 VDCGANSTAV 830
VDCG NSTA+
Sbjct: 222 VDCGGNSTAI 231
>ref|NP_001137313.1| transmembrane protein 106C isoform b [Homo sapiens].
Length = 231
Score = 379 bits (974), Expect = e-105
Identities = 194/250 (77%), Positives = 203/250 (81%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSA A P SC+R++ DDR+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTV
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
VNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221
Query: 801 VDCGANSTAV 830
VDCG NSTA+
Sbjct: 222 VDCGGNSTAI 231
>ref|NP_001127704.1| transmembrane protein 106B [Homo sapiens].
Length = 274
Score = 204 bits (519), Expect = 1e-52
Identities = 108/252 (42%), Positives = 147/252 (58%)
Frame = +3
Query: 69 HIPAMGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQG 248
H+P S+ A+ S R E + ++QFPYVEFTGRDS+TC TCQG
Sbjct: 7 HLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQG 66
Query: 249 TGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDD 428
TG IP Q N+LVALIP+SDQRLRP+RTK Y FFLFP S+ V
Sbjct: 67 TGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYI 126
Query: 429 GIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSL 608
G+K V+++ Q + L IT TL I N+N+Y V V ++++QVQ+ TV+G +N+++
Sbjct: 127 GVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITI 186
Query: 609 IPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLE 788
I P +++T + SY+Y FCTL I VHNIV+ M+ +V +Y GH Q S E
Sbjct: 187 IGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQE 246
Query: 789 THHYVDCGANST 824
+ YVDCG N+T
Sbjct: 247 RYQYVDCGRNTT 258
>ref|NP_060844.2| transmembrane protein 106B [Homo sapiens].
Length = 274
Score = 204 bits (519), Expect = 1e-52
Identities = 108/252 (42%), Positives = 147/252 (58%)
Frame = +3
Query: 69 HIPAMGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQG 248
H+P S+ A+ S R E + ++QFPYVEFTGRDS+TC TCQG
Sbjct: 7 HLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQG 66
Query: 249 TGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDD 428
TG IP Q N+LVALIP+SDQRLRP+RTK Y FFLFP S+ V
Sbjct: 67 TGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYI 126
Query: 429 GIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSL 608
G+K V+++ Q + L IT TL I N+N+Y V V ++++QVQ+ TV+G +N+++
Sbjct: 127 GVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITI 186
Query: 609 IPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLE 788
I P +++T + SY+Y FCTL I VHNIV+ M+ +V +Y GH Q S E
Sbjct: 187 IGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQE 246
Query: 789 THHYVDCGANST 824
+ YVDCG N+T
Sbjct: 247 RYQYVDCGRNTT 258
>ref|NP_659478.1| transmembrane protein 106A [Homo sapiens].
Length = 262
Score = 124 bits (312), Expect = 1e-28
Identities = 68/200 (34%), Positives = 109/200 (54%)
Frame = +3
Query: 225 ITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFP 404
+TC TCQG+G IP E +LVALIP+ DQRL+P+ TK + FFLFP
Sbjct: 57 VTCPTCQGSGKIPQELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFP 116
Query: 405 HSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGS 584
SV+V G+ V F++ D + L IT L I N N+YP+ VT L+ +V +++ VVG
Sbjct: 117 RSVIVQPAGLNSSTVAFDEAD--IYLNITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQ 174
Query: 585 YLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIG 764
+ + I P + + + ++ Y CT +I VH++++ ++ ++ SY+
Sbjct: 175 VSNNLLLHIGPLASEQMFYAVATKIRD--ENTYKICTWLEIKVHHVLLHIQGTLTCSYLS 232
Query: 765 HMTQSSLETHHYVDCGANST 824
H Q +++ YVDC N++
Sbjct: 233 HSEQLVFQSYEYVDCRGNAS 252
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,409,966
Number of extensions: 1444557
Number of successful extensions: 4609
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4596
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958747.1| transmembrane protein 106C [Mus musculus]. 374 e-104
Alignment gi|NP_082268.2| transmembrane protein 106B [Mus musculus]. 199 5e-51
Alignment gi|NP_659079.1| transmembrane protein 106A [Mus musculus]. 132 7e-31
>ref|NP_958747.1| transmembrane protein 106C [Mus musculus].
Length = 260
Score = 374 bits (961), Expect = e-104
Identities = 188/249 (75%), Positives = 208/249 (83%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHS+ C+R+K D+ E+ LA+R+QEEAIAQFPYVEFTGR+SITC TCQG GYI
Sbjct: 1 MGSQHSSAL--TFCQRKKDDNPEDLLADRDQEEAIAQFPYVEFTGRNSITCHTCQGAGYI 58
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
P EQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDD+GIKV
Sbjct: 59 PAEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVFFFLFPHSVLVDDNGIKV 118
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
KVTFN+QDSLV+L +TATLKIRNSNFYPVAVT+L SQVQYM VVGSY T+NVSLI PR
Sbjct: 119 TKVTFNEQDSLVVLDVTATLKIRNSNFYPVAVTNLFSQVQYMKAVVGSYTTTNVSLIAPR 178
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SEHLVNFT KAE+GGP SYVYF+CTLP I VHNIV+FMRTSVKISYIGH++QS+LET HY
Sbjct: 179 SEHLVNFTVKAEVGGPSSYVYFYCTLPAIRVHNIVIFMRTSVKISYIGHISQSTLETQHY 238
Query: 801 VDCGANSTA 827
VDCG NSTA
Sbjct: 239 VDCGVNSTA 247
>ref|NP_082268.2| transmembrane protein 106B [Mus musculus].
Length = 275
Score = 199 bits (505), Expect = 5e-51
Identities = 100/214 (46%), Positives = 135/214 (63%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ + + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIEVKYIGVKSAYVSYDAEKRTIYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
+++QVQ+ TV+G +N++ I P +++T + SY+Y FCTL I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLLSIKVHNI 225
Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
V+ M+ +V +Y GH Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTAYFGHSEQISQERYQYVDCGRNTT 259
>ref|NP_659079.1| transmembrane protein 106A [Mus musculus].
Length = 261
Score = 132 bits (331), Expect = 7e-31
Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 1/229 (0%)
Frame = +3
Query: 135 ADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQR 314
A N+ + + A + PY + +TC TCQG G IP EQ +LVALIP+ DQR
Sbjct: 26 ASQAANYFSTGSSKPAHSCMPYEKAASSSFVTCPTCQGNGEIPQEQEKQLVALIPYGDQR 85
Query: 315 LRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITA 494
L+P+RTK + FFL+P + V G+ VTF +D+ V L T
Sbjct: 86 LKPRRTKLFVFLSVAICLLIFSLTIFFLYPRPIAVRPVGLNSSTVTF--EDAHVQLNTTN 143
Query: 495 TLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTS-NVSLIPPRSEHLVNFTAKAEMGGPF 671
L I NSNFYP+ VT L+++V + +VVG +S + + P SE + A +
Sbjct: 144 VLNIFNSNFYPITVTQLTAEVLHQASVVGQVTSSLRLHIGPLASEQMPYEVASRILD--- 200
Query: 672 SYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHYVDCGAN 818
Y CT P I VH+I++ ++ S+ S++ H Q E+ YVDC N
Sbjct: 201 ENTYKICTWPKIRVHHILLNIQGSLTCSFLSHPQQLPFESFEYVDCREN 249
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,871,887
Number of extensions: 1219771
Number of successful extensions: 3884
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3863
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355686.1| PREDICTED: transmembrane protein 106C isofor... 460 e-130
Alignment gi|XP_003355685.1| PREDICTED: transmembrane protein 106C isofor... 412 e-115
Alignment gi|XP_003355684.1| PREDICTED: transmembrane protein 106C isofor... 412 e-115
Alignment gi|XP_001925965.2| PREDICTED: transmembrane protein 106C isofor... 412 e-115
Alignment gi|XP_003355683.1| PREDICTED: transmembrane protein 106C isofor... 412 e-115
Alignment gi|XP_003355682.1| PREDICTED: transmembrane protein 106C isofor... 412 e-115
Alignment gi|XP_003130224.1| PREDICTED: transmembrane protein 106B-like [... 198 4e-51
Alignment gi|XP_003358075.1| PREDICTED: transmembrane protein 106A-like i... 119 3e-27
Alignment gi|XP_003358074.1| PREDICTED: transmembrane protein 106A-like i... 119 3e-27
>ref|XP_003355686.1| PREDICTED: transmembrane protein 106C isoform 6 [Sus scrofa].
Length = 250
Score = 460 bits (1183), Expect = e-130
Identities = 231/250 (92%), Positives = 232/250 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMR SV+ SYIGHMTQSSLETHHY
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRHSVEDSYIGHMTQSSLETHHY 240
Query: 801 VDCGANSTAV 830
VDCGANSTAV
Sbjct: 241 VDCGANSTAV 250
>ref|XP_003355685.1| PREDICTED: transmembrane protein 106C isoform 5 [Sus scrofa].
Length = 229
Score = 412 bits (1060), Expect = e-115
Identities = 208/224 (92%), Positives = 208/224 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224
>ref|XP_003355684.1| PREDICTED: transmembrane protein 106C isoform 4 [Sus scrofa].
Length = 229
Score = 412 bits (1060), Expect = e-115
Identities = 208/224 (92%), Positives = 208/224 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224
>ref|XP_001925965.2| PREDICTED: transmembrane protein 106C isoform 1 [Sus scrofa].
Length = 229
Score = 412 bits (1060), Expect = e-115
Identities = 208/224 (92%), Positives = 208/224 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224
>ref|XP_003355683.1| PREDICTED: transmembrane protein 106C isoform 3 [Sus scrofa].
Length = 229
Score = 412 bits (1060), Expect = e-115
Identities = 208/224 (92%), Positives = 208/224 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224
>ref|XP_003355682.1| PREDICTED: transmembrane protein 106C isoform 2 [Sus scrofa].
Length = 229
Score = 412 bits (1060), Expect = e-115
Identities = 208/224 (92%), Positives = 208/224 (92%)
Frame = +3
Query: 81 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
PTEQVNELVALIPHSDQRLRPQRTKQY FFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180
Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224
>ref|XP_003130224.1| PREDICTED: transmembrane protein 106B-like [Sus scrofa].
Length = 275
Score = 198 bits (504), Expect = 4e-51
Identities = 101/214 (47%), Positives = 134/214 (62%)
Frame = +3
Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP+SDQRLRP+RTK Y
Sbjct: 46 VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105
Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
FFLFP S+ V G+K V+++ Q + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVEN 165
Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
+ +QVQ+ TV+G +N++ I P +++T + SY+Y FCTL I VHNI
Sbjct: 166 IIAQVQFSKTVIGKARLNNITKIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNI 225
Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
V+ M+ +V +Y GH Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259
>ref|XP_003358075.1| PREDICTED: transmembrane protein 106A-like isoform 2 [Sus scrofa].
Length = 261
Score = 119 bits (298), Expect = 3e-27
Identities = 69/210 (32%), Positives = 106/210 (50%)
Frame = +3
Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
P TG + C TCQG+G IP E +LVALIP+ DQRL+P+ TK
Sbjct: 46 PCERATGASFVICPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVFICLVT 105
Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
FFLFP ++ + G+ V F + D + L IT L I N+N+YP+ VT L+ +
Sbjct: 106 SSLIAFFLFPRTIAMQPAGLNSSTVAFEETD--ICLNITNILNISNNNYYPITVTQLTVE 163
Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
V +++ VVG S + I P + V + + Y CT I VH++++ +
Sbjct: 164 VLHLSLVVGQVSDSLLLHIGPLASEQVFYAVANRI--QEENTYKICTWLKIKVHHVLLHI 221
Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
+ ++ SY+ H Q + + YVDC N++
Sbjct: 222 QGTLTYSYLSHSEQLVFQNYEYVDCRGNTS 251
>ref|XP_003358074.1| PREDICTED: transmembrane protein 106A-like isoform 1 [Sus scrofa].
Length = 261
Score = 119 bits (298), Expect = 3e-27
Identities = 69/210 (32%), Positives = 106/210 (50%)
Frame = +3
Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
P TG + C TCQG+G IP E +LVALIP+ DQRL+P+ TK
Sbjct: 46 PCERATGASFVICPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVFICLVT 105
Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
FFLFP ++ + G+ V F + D + L IT L I N+N+YP+ VT L+ +
Sbjct: 106 SSLIAFFLFPRTIAMQPAGLNSSTVAFEETD--ICLNITNILNISNNNYYPITVTQLTVE 163
Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
V +++ VVG S + I P + V + + Y CT I VH++++ +
Sbjct: 164 VLHLSLVVGQVSDSLLLHIGPLASEQVFYAVANRI--QEENTYKICTWLKIKVHHVLLHI 221
Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
+ ++ SY+ H Q + + YVDC N++
Sbjct: 222 QGTLTYSYLSHSEQLVFQNYEYVDCRGNTS 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,682,108
Number of extensions: 907057
Number of successful extensions: 2935
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2910
Number of HSP's successfully gapped: 9
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002620
(1172 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1586 0.0
Sscrofa_Chr05 779 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1586 bits (800), Expect = 0.0
Identities = 1066/1148 (92%), Gaps = 5/1148 (0%)
Strand = Plus / Plus
Query: 30 ggctcggaagacctaagaggcaggacatgacacaagtgacacatcccggccatggggtcc 89
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 124684658 ggctctgaagacctaagaggcaggacatgacacaagtggcacatcccggccatgggatcc 124684717
Query: 90 cagcattctgcctttgctcaccccccttcctgcaagagaagaaaagcagatgacagagag 149
||||||||||| | ||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct: 124684718 cagcattctgcttctgctcaccccccttccttcaagcaaaggaaagcagatgacagagag 124684777
Query: 150 aacttcctggccgaacgggagcaggaagaagccattgctcagttcccatatgtggagttc 209
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124684778 gacttgctggccgaaggggagcaggaagaagccattgctcagttcccatatgtggagttc 124684837
Query: 210 actgggcgagatag-catcacctgtctcacttgccaggggacaggctacattccaacaga 268
|| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 124684838 accgggagagataggcatcaactgtctcacttgccaggggacaggctacattccaacaga 124684897
Query: 269 gcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctcagag 328
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 124684898 gcaagtaaatgcgttggtggctttgagcccacacagtgatcagagattgcgtcctcagag 124684957
Query: 329 aactaagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggt 388
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 124684958 aactaagcaatatgtcctcttgtctgtcccgctctgtctcctagcatctggtttggtagt 124685017
Query: 389 tttcttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagt 448
||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 124685018 tttcttcatatttccacattcggtcctcatggatgatgatggcatcagagtggtgaaagt 124685077
Query: 449 cacatttaataagcaggactcccttgtaatcctcgccatcacggccaccctgaaaatcag 508
| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 124685078 aatgtttaataagcaggaatcccttgtaatcctctccatcctggccaccctgaaaatcag 124685137
Query: 509 aaactccaacttctacccagtggcggtgaccagcctgtccagccaggttcagtacatgaa 568
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 124685138 aaactccaacttctatccagtggcggtgaccagcctatcctgccaggttcagtacatgaa 124685197
Query: 569 caccgtggtcgggtcgtacttgacctccaacgtctccctcattccaccgcggagcgagca 628
||| |||||| ||| ||| ||||| | |||||||||||||||||||| | ||| | ||
Sbjct: 124685198 cactgtggtcaagtcatacatgaccactaacgtctccctcattccaccacagagtgcaca 124685257
Query: 629 cctggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgtatttctt 688
||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 124685258 cctggtgaattttaccacaaaggctgaaatgggaggaccattttcctatatgtatttctt 124685317
Query: 689 ctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcggacttcagtgaa 748
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124685318 ctgcacattacccgacatcctggtgcacaatatagtggtcttcatgcggacttcagtgaa 124685377
Query: 749 gatttcctacattggccacatgacccagagctccttggagacacatcactatgtggattg 808
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 124685378 gatttcctacattggccacatgatccagagctccttggagacacatcactatgtggattg 124685437
Query: 809 tggagccaattccacggctgtttagaaactggcctgggtttttccatggcagtacctgtc 868
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 124685438 tggagccaattccacggctatttagaaactggccttggtttttccatggcagcacctgtc 124685497
Query: 869 agaagagacagcagcgcctgggcctgagctctatacctaccccagggggtggaactgggg 928
|||||||||||||| ||| |||||||||||| |||||||||||||| | |||| ||||||
Sbjct: 124685498 agaagagacagcagtgcccgggcctgagctccatacctaccccaggtgatggagctgggg 124685557
Query: 929 gag-aaatggttctctcaatccccagaaaacaccctcctgccacttgggaggaaaactcc 987
||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124685558 gagaaaatggttttctcagtccccagaaaacactctcctgccacttgggaggaaaactcc 124685617
Query: 988 tttctgtagcacagtatacgcttctcagaaacagcaggatcactgcctagtgcctagcat 1047
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124685618 tttctgtagcacagtgtacgcttctcagaaccagcaggatcactgcctagtgcctagcat 124685677
Query: 1048 gtgcccagc-aatagtaggcactcggaagtttgaagag-ttaattgagatcttttcagct 1105
||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct: 124685678 gtgcccagcaaatagtaggcactcaaaggtttgaagagtttaattgagatcttttcagct 124685737
Query: 1106 gttctcggggca-tataaattcagatcataccgtgattctcggttatcagtgacatggaa 1164
|||||||||||| |||||||||| |||||| | ||||||| |||||| ||||||||||||
Sbjct: 124685738 gttctcggggcattataaattcaaatcatatcatgattctaggttattagtgacatggaa 124685797
Query: 1165 ataggact 1172
||||||||
Sbjct: 124685798 ataggact 124685805
>Sscrofa_Chr05
|| Length = 111506441
Score = 779 bits (393), Expect = 0.0
Identities = 434/441 (98%), Gaps = 5/441 (1%)
Strand = Plus / Plus
Query: 736 ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 795
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403840 ggacttcagtgaagatt-cctacattggccacatgacccagagctccttggagacacatc 81403898
Query: 796 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403899 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 81403958
Query: 856 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403959 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 81404018
Query: 916 ggtggaactgggggagaaa-tggttctctcaatccccagaaaacaccctcctgccacttg 974
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81404019 ggtggaactgggggagaaattggttctctcaatccccagaaaacaccctcctgccacttg 81404078
Query: 975 ggaggaaaactcctttctgtagcacagtatacgcttctcagaaacagcaggatcactgcc 1034
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 81404079 ggaggaaaactcctttctgtagcacagtatacgcttctcagaaccagcaggatcactgcc 81404138
Query: 1035 tagtgcctagcatgtgcccagc-aatagtaggcactcggaagtttgaaga-gttaattga 1092
|||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct: 81404139 tagtgcctagcatgtgcccagcaaatagtaggcactcggaggtttgaagaggttaattga 81404198
Query: 1093 gatcttttcagctgttctcggggca-tataaattcagatcataccgtgattctcggttat 1151
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 81404199 gatcttttcagctgttctcggggcattataaattcagatcataccgtgattctcggttat 81404258
Query: 1152 cagtgacatggaaataggact 1172
|||||||||||||||||||||
Sbjct: 81404259 cagtgacatggaaataggact 81404279
Score = 771 bits (389), Expect = 0.0
Identities = 432/441 (97%), Gaps = 4/441 (0%)
Strand = Plus / Minus
Query: 736 ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514675 ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 81514616
Query: 796 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514615 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 81514556
Query: 856 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514555 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 81514496
Query: 916 ggtggaactgggggagaaa-tggttctctcaatccccagaaaacaccctcctgccacttg 974
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514495 ggtggaactgggggagaaattggttctctcaatccccagaaaacaccctcctgccacttg 81514436
Query: 975 ggaggaaaactcctttctgtagcacagtatacgcttctcagaaacagcaggatcactgcc 1034
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 81514435 ggaggaaaactcctttctgtagcacagtgtacgcttctcagaaccagcaggatcactgcc 81514376
Query: 1035 tagtgcctagcatgtgcccagc-aatagtaggcactcggaagtttgaag-agttaattga 1092
||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 81514375 tagtgcctagcgtgtgcccagcaaatagtaggcactcggaggtttgaagaagttaattga 81514316
Query: 1093 gatcttttcagctgttctcggggca-tataaattcagatcataccgtgattctcggttat 1151
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 81514315 gatcttttcagctgttctcggggcattataaattcagatcataccgtgattctcagttat 81514256
Query: 1152 cagtgacatggaaataggact 1172
|||||||||||||||||||||
Sbjct: 81514255 cagtgacatggaaataggact 81514235
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 51 aggacatgacacaagtgacacatcccggccatggggtcccagcattctgcctttgctcac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399206 aggacatgacacaagtgacacatcccggccatggggtcccagcattctgcctttgctcac 81399265
Query: 111 cccccttcctgcaagagaagaaaagcagatgacagagagaacttcctggccgaacgggag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399266 cccccttcctgcaagagaagaaaagcagatgacagagagaacttcctggccgaacgggag 81399325
Query: 171 caggaagaagccattgctcagttcccatatgtggagttcactgggcgagatagcatcacc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399326 caggaagaagccattgctcagttcccatatgtggagttcactgggcgagatagcatcacc 81399385
Query: 231 tgtctcacttgccaggggacaggctacattccaacag 267
|||||||||||||||||||||||||||||||||||||
Sbjct: 81399386 tgtctcacttgccaggggacaggctacattccaacag 81399422
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 332 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401234 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 81401293
Query: 392 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401294 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 81401353
Query: 452 atttaataagcaggactcccttgtaatcctcgccatcacgg 492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401354 atttaataagcaggactcccttgtaatcctcgccatcacgg 81401394
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 332 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517282 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 81517223
Query: 392 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517222 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 81517163
Query: 452 atttaataagcaggactcccttgtaatcctcgccatcacgg 492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517162 atttaataagcaggactcccttgtaatcctcgccatcacgg 81517122
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 491 ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401483 ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 81401542
Query: 551 ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401543 ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 81401602
Query: 611 tccaccgcggagcgagcacctggt 634
||||||||||||||||||||||||
Sbjct: 81401603 tccaccgcggagcgagcacctggt 81401626
Score = 270 bits (136), Expect = 2e-69
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 491 ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 550
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517033 ggccactctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 81516974
Query: 551 ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 610
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 81516973 ccaggttcagtacatgaacactgtggtcgggtcgtacttgacctccaacgtctccctcat 81516914
Query: 611 tccaccgcggagcgagcacctggt 634
||||||||||||||||||||||||
Sbjct: 81516913 tccaccgcggagcgagcacctggt 81516890
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 266 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81400674 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 81400733
Query: 326 gagaac 331
||||||
Sbjct: 81400734 gagaac 81400739
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 266 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517851 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 81517792
Query: 326 gagaac 331
||||||
Sbjct: 81517791 gagaac 81517786
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 683 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81402913 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 81402967
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 683 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81515602 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 81515548
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 2 attcggagcatgcgcaccgactgcgggcggctcggaagacctaagaggcagg 53
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81398611 attcggagcatgcgcaccgactgcgggcggctcggaagacctaagaggcagg 81398662
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 632 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 682
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81402075 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 81402125
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 632 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 682
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81516441 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 81516391
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,122,970
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 15
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)