Animal-Genome cDNA 20110601C-002620


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029633.1| transmembrane protein 106C [Bos taurus].          411   e-115
Alignment   gi|NP_001029509.1| transmembrane protein 106B [Bos taurus].          197   1e-50
Alignment   gi|NP_001014870.1| transmembrane protein 106A [Bos taurus].          113   4e-25

>ref|NP_001029633.1| transmembrane protein 106C [Bos taurus].
          Length = 249

 Score =  411 bits (1056), Expect = e-115
 Identities = 208/250 (83%), Positives = 221/250 (88%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGS+HS +AH P  KRRKADD E+ LAEREQ+EAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSRHSTYAHRPFSKRRKADDTEDSLAEREQQEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           P EQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  P-EQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTF++Q SLVILAITATLKIRNSNFY VAVTSLSS+VQYMNTVVGSY T+N+SLIPPR
Sbjct: 120 VKVTFDEQRSLVILAITATLKIRNSNFYSVAVTSLSSEVQYMNTVVGSYTTTNISLIPPR 179

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SEHLVNFTAKAEMGGP+SYVYFFCTLP I VHN+VVF+RTSVKISYIGH+TQSSLETHHY
Sbjct: 180 SEHLVNFTAKAEMGGPYSYVYFFCTLPYIGVHNVVVFVRTSVKISYIGHVTQSSLETHHY 239

Query: 801 VDCGANSTAV 830
           VDCG NSTAV
Sbjct: 240 VDCGVNSTAV 249


>ref|NP_001029509.1| transmembrane protein 106B [Bos taurus].
          Length = 275

 Score =  197 bits (502), Expect = 1e-50
 Identities = 100/214 (46%), Positives = 135/214 (63%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ Q   + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
           +++QVQ+  TV+G    +N++ I P     +++T    +    SY++ FCTL  I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITSIGPLDMKQIDYTVPTVIAEEMSYMFDFCTLLTIKVHNI 225

Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
           V+ M+ +V  +Y GH  Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259


>ref|NP_001014870.1| transmembrane protein 106A [Bos taurus].
          Length = 261

 Score =  113 bits (282), Expect = 4e-25
 Identities = 66/210 (31%), Positives = 107/210 (50%)
 Frame = +3

Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
           P     G   +TC TCQG+G IP E   +LVALIP+ DQRL+P+ TK             
Sbjct: 46  PCERAAGAGFVTCPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVSICLVT 105

Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
                FFLFP ++ V   G+     T    ++ V L IT+ L I N+N+ P+ VT L+ +
Sbjct: 106 SSLIIFFLFPRTIAVQPVGLN--SSTVATDEANVYLNITSILNISNNNYCPITVTQLTIE 163

Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
           V +++ VVG    S +  I P +   + +     +       Y  CT  +I VH++++++
Sbjct: 164 VLHLSLVVGQVSHSLLLHIGPLASEQMFYAVTNRIND--ENTYKICTWLEIKVHHVLLYI 221

Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
           + ++  SY+    Q   +++ YVDC  N++
Sbjct: 222 QGTLTYSYLSRSEQLVFQSYEYVDCRGNTS 251


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,203,479
Number of extensions: 1416286
Number of successful extensions: 4654
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4637
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534825.2| PREDICTED: hypothetical protein XP_534825 isofo...   427   e-120
Alignment   gi|XP_863768.1| PREDICTED: hypothetical protein XP_858675 isofo...   427   e-120
Alignment   gi|XP_851445.1| PREDICTED: hypothetical protein XP_846352 isofo...   427   e-120
Alignment   gi|XP_863835.1| PREDICTED: hypothetical protein XP_858742 isofo...   385   e-107
Alignment   gi|XP_863815.1| PREDICTED: hypothetical protein XP_858722 isofo...   385   e-107
Alignment   gi|XP_863790.1| PREDICTED: hypothetical protein XP_858697 isofo...   369   e-102
Alignment   gi|XP_539439.2| PREDICTED: hypothetical protein XP_539439 isofo...   199   3e-51
Alignment   gi|XP_542765.2| PREDICTED: hypothetical protein XP_542765 [Cani...   190   3e-48
Alignment   gi|XP_862091.1| PREDICTED: hypothetical protein XP_856998 isofo...   146   3e-35
Alignment   gi|XP_862060.1| PREDICTED: hypothetical protein XP_856967 isofo...   146   3e-35

>ref|XP_534825.2| PREDICTED: hypothetical protein XP_534825 isoform 1 [Canis
           familiaris].
          Length = 249

 Score =  427 bits (1099), Expect = e-120
 Identities = 216/250 (86%), Positives = 225/250 (90%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249


>ref|XP_863768.1| PREDICTED: hypothetical protein XP_858675 isoform 3 [Canis
           familiaris].
          Length = 249

 Score =  427 bits (1099), Expect = e-120
 Identities = 216/250 (86%), Positives = 225/250 (90%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249


>ref|XP_851445.1| PREDICTED: hypothetical protein XP_846352 isoform 2 [Canis
           familiaris].
          Length = 249

 Score =  427 bits (1099), Expect = e-120
 Identities = 216/250 (86%), Positives = 225/250 (90%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTVVG+Y+T+NVSLIPPR
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTVVGTYVTTNVSLIPPR 179

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SE LVNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 180 SEQLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 239

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 240 VDCGANSTAV 249


>ref|XP_863835.1| PREDICTED: hypothetical protein XP_858742 isoform 6 [Canis
           familiaris].
          Length = 230

 Score =  385 bits (990), Expect = e-107
 Identities = 201/250 (80%), Positives = 207/250 (82%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV               
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
               VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 221 VDCGANSTAV 230


>ref|XP_863815.1| PREDICTED: hypothetical protein XP_858722 isoform 5 [Canis
           familiaris].
          Length = 230

 Score =  385 bits (990), Expect = e-107
 Identities = 201/250 (80%), Positives = 207/250 (82%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV               
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
               VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 221 VDCGANSTAV 230


>ref|XP_863790.1| PREDICTED: hypothetical protein XP_858697 isoform 4 [Canis
           familiaris].
          Length = 222

 Score =  369 bits (948), Expect = e-102
 Identities = 193/242 (79%), Positives = 199/242 (82%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS  A P  CKR+K ++RE+ LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSTSARPSYCKRKK-ENREDLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 59

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 60  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 119

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFY VAVTSLSSQVQYMNTV               
Sbjct: 120 VKVTFNKQDSLVILAITATLKIRNSNFYSVAVTSLSSQVQYMNTV--------------- 164

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
               VNFTAKAEMGGPFSYVYFFCTLPDILVHNIV+FMRTSVKI+YIGHMTQSSLETHHY
Sbjct: 165 ----VNFTAKAEMGGPFSYVYFFCTLPDILVHNIVIFMRTSVKIAYIGHMTQSSLETHHY 220

Query: 801 VD 806
           VD
Sbjct: 221 VD 222


>ref|XP_539439.2| PREDICTED: hypothetical protein XP_539439 isoform 1 [Canis
           familiaris].
          Length = 275

 Score =  199 bits (507), Expect = 3e-51
 Identities = 102/214 (47%), Positives = 135/214 (63%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ Q   V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
           +++QVQ+  TV+G    +N++ I P     +++T    +    SY+Y FCTL  I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYMYDFCTLMSIKVHNI 225

Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
           V+ M+ +V  +Y GH  Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259


>ref|XP_542765.2| PREDICTED: hypothetical protein XP_542765 [Canis familiaris].
          Length = 346

 Score =  190 bits (482), Expect = 3e-48
 Identities = 102/219 (46%), Positives = 133/219 (60%), Gaps = 5/219 (2%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 99  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 158

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSL-----VILAITATLKIRNSNFYP 527
                    FFLFP S+     G+K   V  +K  S+     V L IT TL I N+N+Y 
Sbjct: 159 CLLLSGLAVFFLFPRSIDAKYIGVKSAYVICSKAYSIKKKHMVYLNITNTLNITNNNYYS 218

Query: 528 VAVTSLSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDI 707
           V V ++++QVQ   TV+G    +N++ I P     +++T    +    SY+Y FCTL  I
Sbjct: 219 VEVENITAQVQLSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYMYDFCTLISI 278

Query: 708 LVHNIVVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
            VHNIV+ M+ +V  +Y GH  Q S E + YVDCG N+T
Sbjct: 279 KVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 317


>ref|XP_862091.1| PREDICTED: hypothetical protein XP_856998 isoform 4 [Canis
           familiaris].
          Length = 211

 Score =  146 bits (369), Expect = 3e-35
 Identities = 76/166 (45%), Positives = 103/166 (62%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ Q   V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYV 680
           +++QVQ+  TV+G    +N++ I P     +++T    +    SY+
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYM 211


>ref|XP_862060.1| PREDICTED: hypothetical protein XP_856967 isoform 3 [Canis
           familiaris].
          Length = 211

 Score =  146 bits (369), Expect = 3e-35
 Identities = 76/166 (45%), Positives = 103/166 (62%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ Q   V L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTVYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYV 680
           +++QVQ+  TV+G    +N++ I P     +++T    +    SY+
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTIIAEEMSYM 211


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,224,915
Number of extensions: 1454464
Number of successful extensions: 4600
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4572
Number of HSP's successfully gapped: 11
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001137314.1| transmembrane protein 106C isoform a [Homo s...   419   e-117
Alignment   gi|NP_076961.1| transmembrane protein 106C isoform a [Homo sapi...   419   e-117
Alignment   gi|NP_001137315.1| transmembrane protein 106C isoform b [Homo s...   379   e-105
Alignment   gi|NP_001137313.1| transmembrane protein 106C isoform b [Homo s...   379   e-105
Alignment   gi|NP_001127704.1| transmembrane protein 106B [Homo sapiens].        204   1e-52
Alignment   gi|NP_060844.2| transmembrane protein 106B [Homo sapiens].           204   1e-52
Alignment   gi|NP_659478.1| transmembrane protein 106A [Homo sapiens].           124   1e-28

>ref|NP_001137314.1| transmembrane protein 106C isoform a [Homo sapiens].
          Length = 250

 Score =  419 bits (1077), Expect = e-117
 Identities = 208/250 (83%), Positives = 220/250 (88%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSA A P SC+R++ DDR+  LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTVV +Y+T+NVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SE LVNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240

Query: 801 VDCGANSTAV 830
           VDCG NSTA+
Sbjct: 241 VDCGGNSTAI 250


>ref|NP_076961.1| transmembrane protein 106C isoform a [Homo sapiens].
          Length = 250

 Score =  419 bits (1077), Expect = e-117
 Identities = 208/250 (83%), Positives = 220/250 (88%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSA A P SC+R++ DDR+  LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTVV +Y+T+NVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SE LVNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240

Query: 801 VDCGANSTAV 830
           VDCG NSTA+
Sbjct: 241 VDCGGNSTAI 250


>ref|NP_001137315.1| transmembrane protein 106C isoform b [Homo sapiens].
          Length = 231

 Score =  379 bits (974), Expect = e-105
 Identities = 194/250 (77%), Positives = 203/250 (81%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSA A P SC+R++ DDR+  LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTV               
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
               VNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221

Query: 801 VDCGANSTAV 830
           VDCG NSTA+
Sbjct: 222 VDCGGNSTAI 231


>ref|NP_001137313.1| transmembrane protein 106C isoform b [Homo sapiens].
          Length = 231

 Score =  379 bits (974), Expect = e-105
 Identities = 194/250 (77%), Positives = 203/250 (81%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSA A P SC+R++ DDR+  LAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVIL I ATLKIRNSNFY VAVTSLSSQ+QYMNTV               
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
               VNFT KAEMGGPFSYVYFFCT+P+ILVHNIV+FMRTSVKISYIG MTQSSLETHHY
Sbjct: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221

Query: 801 VDCGANSTAV 830
           VDCG NSTA+
Sbjct: 222 VDCGGNSTAI 231


>ref|NP_001127704.1| transmembrane protein 106B [Homo sapiens].
          Length = 274

 Score =  204 bits (519), Expect = 1e-52
 Identities = 108/252 (42%), Positives = 147/252 (58%)
 Frame = +3

Query: 69  HIPAMGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQG 248
           H+P   S+  A+    S   R          E  +   ++QFPYVEFTGRDS+TC TCQG
Sbjct: 7   HLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQG 66

Query: 249 TGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDD 428
           TG IP  Q N+LVALIP+SDQRLRP+RTK Y                FFLFP S+ V   
Sbjct: 67  TGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYI 126

Query: 429 GIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSL 608
           G+K   V+++ Q   + L IT TL I N+N+Y V V ++++QVQ+  TV+G    +N+++
Sbjct: 127 GVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITI 186

Query: 609 IPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLE 788
           I P     +++T    +    SY+Y FCTL  I VHNIV+ M+ +V  +Y GH  Q S E
Sbjct: 187 IGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQE 246

Query: 789 THHYVDCGANST 824
            + YVDCG N+T
Sbjct: 247 RYQYVDCGRNTT 258


>ref|NP_060844.2| transmembrane protein 106B [Homo sapiens].
          Length = 274

 Score =  204 bits (519), Expect = 1e-52
 Identities = 108/252 (42%), Positives = 147/252 (58%)
 Frame = +3

Query: 69  HIPAMGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQG 248
           H+P   S+  A+    S   R          E  +   ++QFPYVEFTGRDS+TC TCQG
Sbjct: 7   HLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQG 66

Query: 249 TGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDD 428
           TG IP  Q N+LVALIP+SDQRLRP+RTK Y                FFLFP S+ V   
Sbjct: 67  TGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYI 126

Query: 429 GIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSL 608
           G+K   V+++ Q   + L IT TL I N+N+Y V V ++++QVQ+  TV+G    +N+++
Sbjct: 127 GVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITI 186

Query: 609 IPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLE 788
           I P     +++T    +    SY+Y FCTL  I VHNIV+ M+ +V  +Y GH  Q S E
Sbjct: 187 IGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQE 246

Query: 789 THHYVDCGANST 824
            + YVDCG N+T
Sbjct: 247 RYQYVDCGRNTT 258


>ref|NP_659478.1| transmembrane protein 106A [Homo sapiens].
          Length = 262

 Score =  124 bits (312), Expect = 1e-28
 Identities = 68/200 (34%), Positives = 109/200 (54%)
 Frame = +3

Query: 225 ITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFP 404
           +TC TCQG+G IP E   +LVALIP+ DQRL+P+ TK +                FFLFP
Sbjct: 57  VTCPTCQGSGKIPQELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFP 116

Query: 405 HSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGS 584
            SV+V   G+    V F++ D  + L IT  L I N N+YP+ VT L+ +V +++ VVG 
Sbjct: 117 RSVIVQPAGLNSSTVAFDEAD--IYLNITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQ 174

Query: 585 YLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIG 764
              + +  I P +   + +    ++       Y  CT  +I VH++++ ++ ++  SY+ 
Sbjct: 175 VSNNLLLHIGPLASEQMFYAVATKIRD--ENTYKICTWLEIKVHHVLLHIQGTLTCSYLS 232

Query: 765 HMTQSSLETHHYVDCGANST 824
           H  Q   +++ YVDC  N++
Sbjct: 233 HSEQLVFQSYEYVDCRGNAS 252


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,409,966
Number of extensions: 1444557
Number of successful extensions: 4609
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4596
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_958747.1| transmembrane protein 106C [Mus musculus].           374   e-104
Alignment   gi|NP_082268.2| transmembrane protein 106B [Mus musculus].           199   5e-51
Alignment   gi|NP_659079.1| transmembrane protein 106A [Mus musculus].           132   7e-31

>ref|NP_958747.1| transmembrane protein 106C [Mus musculus].
          Length = 260

 Score =  374 bits (961), Expect = e-104
 Identities = 188/249 (75%), Positives = 208/249 (83%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHS+      C+R+K D+ E+ LA+R+QEEAIAQFPYVEFTGR+SITC TCQG GYI
Sbjct: 1   MGSQHSSAL--TFCQRKKDDNPEDLLADRDQEEAIAQFPYVEFTGRNSITCHTCQGAGYI 58

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           P EQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDD+GIKV
Sbjct: 59  PAEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVFFFLFPHSVLVDDNGIKV 118

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
            KVTFN+QDSLV+L +TATLKIRNSNFYPVAVT+L SQVQYM  VVGSY T+NVSLI PR
Sbjct: 119 TKVTFNEQDSLVVLDVTATLKIRNSNFYPVAVTNLFSQVQYMKAVVGSYTTTNVSLIAPR 178

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SEHLVNFT KAE+GGP SYVYF+CTLP I VHNIV+FMRTSVKISYIGH++QS+LET HY
Sbjct: 179 SEHLVNFTVKAEVGGPSSYVYFYCTLPAIRVHNIVIFMRTSVKISYIGHISQSTLETQHY 238

Query: 801 VDCGANSTA 827
           VDCG NSTA
Sbjct: 239 VDCGVNSTA 247


>ref|NP_082268.2| transmembrane protein 106B [Mus musculus].
          Length = 275

 Score =  199 bits (505), Expect = 5e-51
 Identities = 100/214 (46%), Positives = 135/214 (63%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ +   + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIEVKYIGVKSAYVSYDAEKRTIYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
           +++QVQ+  TV+G    +N++ I P     +++T    +    SY+Y FCTL  I VHNI
Sbjct: 166 ITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLLSIKVHNI 225

Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
           V+ M+ +V  +Y GH  Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTAYFGHSEQISQERYQYVDCGRNTT 259


>ref|NP_659079.1| transmembrane protein 106A [Mus musculus].
          Length = 261

 Score =  132 bits (331), Expect = 7e-31
 Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 1/229 (0%)
 Frame = +3

Query: 135 ADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQR 314
           A    N+ +    + A +  PY +      +TC TCQG G IP EQ  +LVALIP+ DQR
Sbjct: 26  ASQAANYFSTGSSKPAHSCMPYEKAASSSFVTCPTCQGNGEIPQEQEKQLVALIPYGDQR 85

Query: 315 LRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITA 494
           L+P+RTK +                FFL+P  + V   G+    VTF  +D+ V L  T 
Sbjct: 86  LKPRRTKLFVFLSVAICLLIFSLTIFFLYPRPIAVRPVGLNSSTVTF--EDAHVQLNTTN 143

Query: 495 TLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTS-NVSLIPPRSEHLVNFTAKAEMGGPF 671
            L I NSNFYP+ VT L+++V +  +VVG   +S  + + P  SE +    A   +    
Sbjct: 144 VLNIFNSNFYPITVTQLTAEVLHQASVVGQVTSSLRLHIGPLASEQMPYEVASRILD--- 200

Query: 672 SYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHYVDCGAN 818
              Y  CT P I VH+I++ ++ S+  S++ H  Q   E+  YVDC  N
Sbjct: 201 ENTYKICTWPKIRVHHILLNIQGSLTCSFLSHPQQLPFESFEYVDCREN 249


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,871,887
Number of extensions: 1219771
Number of successful extensions: 3884
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3863
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355686.1| PREDICTED: transmembrane protein 106C isofor...   460   e-130
Alignment   gi|XP_003355685.1| PREDICTED: transmembrane protein 106C isofor...   412   e-115
Alignment   gi|XP_003355684.1| PREDICTED: transmembrane protein 106C isofor...   412   e-115
Alignment   gi|XP_001925965.2| PREDICTED: transmembrane protein 106C isofor...   412   e-115
Alignment   gi|XP_003355683.1| PREDICTED: transmembrane protein 106C isofor...   412   e-115
Alignment   gi|XP_003355682.1| PREDICTED: transmembrane protein 106C isofor...   412   e-115
Alignment   gi|XP_003130224.1| PREDICTED: transmembrane protein 106B-like [...   198   4e-51
Alignment   gi|XP_003358075.1| PREDICTED: transmembrane protein 106A-like i...   119   3e-27
Alignment   gi|XP_003358074.1| PREDICTED: transmembrane protein 106A-like i...   119   3e-27

>ref|XP_003355686.1| PREDICTED: transmembrane protein 106C isoform 6 [Sus scrofa].
          Length = 250

 Score =  460 bits (1183), Expect = e-130
 Identities = 231/250 (92%), Positives = 232/250 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKISYIGHMTQSSLETHHY 800
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMR SV+ SYIGHMTQSSLETHHY
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRHSVEDSYIGHMTQSSLETHHY 240

Query: 801 VDCGANSTAV 830
           VDCGANSTAV
Sbjct: 241 VDCGANSTAV 250


>ref|XP_003355685.1| PREDICTED: transmembrane protein 106C isoform 5 [Sus scrofa].
          Length = 229

 Score =  412 bits (1060), Expect = e-115
 Identities = 208/224 (92%), Positives = 208/224 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224


>ref|XP_003355684.1| PREDICTED: transmembrane protein 106C isoform 4 [Sus scrofa].
          Length = 229

 Score =  412 bits (1060), Expect = e-115
 Identities = 208/224 (92%), Positives = 208/224 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224


>ref|XP_001925965.2| PREDICTED: transmembrane protein 106C isoform 1 [Sus scrofa].
          Length = 229

 Score =  412 bits (1060), Expect = e-115
 Identities = 208/224 (92%), Positives = 208/224 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224


>ref|XP_003355683.1| PREDICTED: transmembrane protein 106C isoform 3 [Sus scrofa].
          Length = 229

 Score =  412 bits (1060), Expect = e-115
 Identities = 208/224 (92%), Positives = 208/224 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224


>ref|XP_003355682.1| PREDICTED: transmembrane protein 106C isoform 2 [Sus scrofa].
          Length = 229

 Score =  412 bits (1060), Expect = e-115
 Identities = 208/224 (92%), Positives = 208/224 (92%)
 Frame = +3

Query: 81  MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 260
           MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1   MGSQHSAFAHPPSCKRRKADDRENFLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60

Query: 261 PTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXXXXXXXFFLFPHSVLVDDDGIKV 440
           PTEQVNELVALIPHSDQRLRPQRTKQY                FFLFPHSVLVDDDGIKV
Sbjct: 61  PTEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVDDDGIKV 120

Query: 441 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 620
           VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR
Sbjct: 121 VKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQVQYMNTVVGSYLTSNVSLIPPR 180

Query: 621 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 752
           SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI
Sbjct: 181 SEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFMRTSVKI 224


>ref|XP_003130224.1| PREDICTED: transmembrane protein 106B-like [Sus scrofa].
          Length = 275

 Score =  198 bits (504), Expect = 4e-51
 Identities = 101/214 (47%), Positives = 134/214 (62%)
 Frame = +3

Query: 183 IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXX 362
           ++QFPYVEFTGRDS+TC TCQGTG IP  Q N+LVALIP+SDQRLRP+RTK Y       
Sbjct: 46  VSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFV 105

Query: 363 XXXXXXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTS 542
                    FFLFP S+ V   G+K   V+++ Q   + L IT TL I N+N+Y V V +
Sbjct: 106 CLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVEN 165

Query: 543 LSSQVQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNI 722
           + +QVQ+  TV+G    +N++ I P     +++T    +    SY+Y FCTL  I VHNI
Sbjct: 166 IIAQVQFSKTVIGKARLNNITKIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNI 225

Query: 723 VVFMRTSVKISYIGHMTQSSLETHHYVDCGANST 824
           V+ M+ +V  +Y GH  Q S E + YVDCG N+T
Sbjct: 226 VLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 259


>ref|XP_003358075.1| PREDICTED: transmembrane protein 106A-like isoform 2 [Sus scrofa].
          Length = 261

 Score =  119 bits (298), Expect = 3e-27
 Identities = 69/210 (32%), Positives = 106/210 (50%)
 Frame = +3

Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
           P    TG   + C TCQG+G IP E   +LVALIP+ DQRL+P+ TK             
Sbjct: 46  PCERATGASFVICPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVFICLVT 105

Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
                FFLFP ++ +   G+    V F + D  + L IT  L I N+N+YP+ VT L+ +
Sbjct: 106 SSLIAFFLFPRTIAMQPAGLNSSTVAFEETD--ICLNITNILNISNNNYYPITVTQLTVE 163

Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
           V +++ VVG    S +  I P +   V +     +       Y  CT   I VH++++ +
Sbjct: 164 VLHLSLVVGQVSDSLLLHIGPLASEQVFYAVANRI--QEENTYKICTWLKIKVHHVLLHI 221

Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
           + ++  SY+ H  Q   + + YVDC  N++
Sbjct: 222 QGTLTYSYLSHSEQLVFQNYEYVDCRGNTS 251


>ref|XP_003358074.1| PREDICTED: transmembrane protein 106A-like isoform 1 [Sus scrofa].
          Length = 261

 Score =  119 bits (298), Expect = 3e-27
 Identities = 69/210 (32%), Positives = 106/210 (50%)
 Frame = +3

Query: 195 PYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYXXXXXXXXXXX 374
           P    TG   + C TCQG+G IP E   +LVALIP+ DQRL+P+ TK             
Sbjct: 46  PCERATGASFVICPTCQGSGEIPRELEKQLVALIPYGDQRLKPRHTKLSVFLAVFICLVT 105

Query: 375 XXXXXFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILAITATLKIRNSNFYPVAVTSLSSQ 554
                FFLFP ++ +   G+    V F + D  + L IT  L I N+N+YP+ VT L+ +
Sbjct: 106 SSLIAFFLFPRTIAMQPAGLNSSTVAFEETD--ICLNITNILNISNNNYYPITVTQLTVE 163

Query: 555 VQYMNTVVGSYLTSNVSLIPPRSEHLVNFTAKAEMGGPFSYVYFFCTLPDILVHNIVVFM 734
           V +++ VVG    S +  I P +   V +     +       Y  CT   I VH++++ +
Sbjct: 164 VLHLSLVVGQVSDSLLLHIGPLASEQVFYAVANRI--QEENTYKICTWLKIKVHHVLLHI 221

Query: 735 RTSVKISYIGHMTQSSLETHHYVDCGANST 824
           + ++  SY+ H  Q   + + YVDC  N++
Sbjct: 222 QGTLTYSYLSHSEQLVFQNYEYVDCRGNTS 251


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,682,108
Number of extensions: 907057
Number of successful extensions: 2935
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2910
Number of HSP's successfully gapped: 9
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002620
         (1172 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1586   0.0  
Sscrofa_Chr05                                                         779   0.0  

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1586 bits (800), Expect = 0.0
 Identities = 1066/1148 (92%), Gaps = 5/1148 (0%)
 Strand = Plus / Plus

                                                                             
Query: 30        ggctcggaagacctaagaggcaggacatgacacaagtgacacatcccggccatggggtcc 89
                 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 124684658 ggctctgaagacctaagaggcaggacatgacacaagtggcacatcccggccatgggatcc 124684717

                                                                             
Query: 90        cagcattctgcctttgctcaccccccttcctgcaagagaagaaaagcagatgacagagag 149
                 ||||||||||| | ||||||||||||||||| ||||  ||| ||||||||||||||||||
Sbjct: 124684718 cagcattctgcttctgctcaccccccttccttcaagcaaaggaaagcagatgacagagag 124684777

                                                                             
Query: 150       aacttcctggccgaacgggagcaggaagaagccattgctcagttcccatatgtggagttc 209
                  |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124684778 gacttgctggccgaaggggagcaggaagaagccattgctcagttcccatatgtggagttc 124684837

                                                                             
Query: 210       actgggcgagatag-catcacctgtctcacttgccaggggacaggctacattccaacaga 268
                 || ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 124684838 accgggagagataggcatcaactgtctcacttgccaggggacaggctacattccaacaga 124684897

                                                                             
Query: 269       gcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctcagag 328
                 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 124684898 gcaagtaaatgcgttggtggctttgagcccacacagtgatcagagattgcgtcctcagag 124684957

                                                                             
Query: 329       aactaagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggt 388
                 ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 124684958 aactaagcaatatgtcctcttgtctgtcccgctctgtctcctagcatctggtttggtagt 124685017

                                                                             
Query: 389       tttcttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagt 448
                 ||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 124685018 tttcttcatatttccacattcggtcctcatggatgatgatggcatcagagtggtgaaagt 124685077

                                                                             
Query: 449       cacatttaataagcaggactcccttgtaatcctcgccatcacggccaccctgaaaatcag 508
                  |  |||||||||||||| ||||||||||||||| |||||  ||||||||||||||||||
Sbjct: 124685078 aatgtttaataagcaggaatcccttgtaatcctctccatcctggccaccctgaaaatcag 124685137

                                                                             
Query: 509       aaactccaacttctacccagtggcggtgaccagcctgtccagccaggttcagtacatgaa 568
                 ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 124685138 aaactccaacttctatccagtggcggtgaccagcctatcctgccaggttcagtacatgaa 124685197

                                                                             
Query: 569       caccgtggtcgggtcgtacttgacctccaacgtctccctcattccaccgcggagcgagca 628
                 ||| ||||||  ||| ||| ||||| | |||||||||||||||||||| | ||| |  ||
Sbjct: 124685198 cactgtggtcaagtcatacatgaccactaacgtctccctcattccaccacagagtgcaca 124685257

                                                                             
Query: 629       cctggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgtatttctt 688
                 |||||||||||||||  | |||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 124685258 cctggtgaattttaccacaaaggctgaaatgggaggaccattttcctatatgtatttctt 124685317

                                                                             
Query: 689       ctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcggacttcagtgaa 748
                 |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124685318 ctgcacattacccgacatcctggtgcacaatatagtggtcttcatgcggacttcagtgaa 124685377

                                                                             
Query: 749       gatttcctacattggccacatgacccagagctccttggagacacatcactatgtggattg 808
                 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 124685378 gatttcctacattggccacatgatccagagctccttggagacacatcactatgtggattg 124685437

                                                                             
Query: 809       tggagccaattccacggctgtttagaaactggcctgggtttttccatggcagtacctgtc 868
                 ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 124685438 tggagccaattccacggctatttagaaactggccttggtttttccatggcagcacctgtc 124685497

                                                                             
Query: 869       agaagagacagcagcgcctgggcctgagctctatacctaccccagggggtggaactgggg 928
                 |||||||||||||| ||| |||||||||||| |||||||||||||| | |||| ||||||
Sbjct: 124685498 agaagagacagcagtgcccgggcctgagctccatacctaccccaggtgatggagctgggg 124685557

                                                                             
Query: 929       gag-aaatggttctctcaatccccagaaaacaccctcctgccacttgggaggaaaactcc 987
                 ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124685558 gagaaaatggttttctcagtccccagaaaacactctcctgccacttgggaggaaaactcc 124685617

                                                                             
Query: 988       tttctgtagcacagtatacgcttctcagaaacagcaggatcactgcctagtgcctagcat 1047
                 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124685618 tttctgtagcacagtgtacgcttctcagaaccagcaggatcactgcctagtgcctagcat 124685677

                                                                             
Query: 1048      gtgcccagc-aatagtaggcactcggaagtttgaagag-ttaattgagatcttttcagct 1105
                 ||||||||| ||||||||||||||  | |||||||||| |||||||||||||||||||||
Sbjct: 124685678 gtgcccagcaaatagtaggcactcaaaggtttgaagagtttaattgagatcttttcagct 124685737

                                                                             
Query: 1106      gttctcggggca-tataaattcagatcataccgtgattctcggttatcagtgacatggaa 1164
                 |||||||||||| |||||||||| |||||| | ||||||| |||||| ||||||||||||
Sbjct: 124685738 gttctcggggcattataaattcaaatcatatcatgattctaggttattagtgacatggaa 124685797

                         
Query: 1165      ataggact 1172
                 ||||||||
Sbjct: 124685798 ataggact 124685805


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  779 bits (393), Expect = 0.0
 Identities = 434/441 (98%), Gaps = 5/441 (1%)
 Strand = Plus / Plus

                                                                            
Query: 736      ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 795
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403840 ggacttcagtgaagatt-cctacattggccacatgacccagagctccttggagacacatc 81403898

                                                                            
Query: 796      actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 855
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403899 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 81403958

                                                                            
Query: 856      ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 915
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403959 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 81404018

                                                                            
Query: 916      ggtggaactgggggagaaa-tggttctctcaatccccagaaaacaccctcctgccacttg 974
                ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81404019 ggtggaactgggggagaaattggttctctcaatccccagaaaacaccctcctgccacttg 81404078

                                                                            
Query: 975      ggaggaaaactcctttctgtagcacagtatacgcttctcagaaacagcaggatcactgcc 1034
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 81404079 ggaggaaaactcctttctgtagcacagtatacgcttctcagaaccagcaggatcactgcc 81404138

                                                                            
Query: 1035     tagtgcctagcatgtgcccagc-aatagtaggcactcggaagtttgaaga-gttaattga 1092
                |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct: 81404139 tagtgcctagcatgtgcccagcaaatagtaggcactcggaggtttgaagaggttaattga 81404198

                                                                            
Query: 1093     gatcttttcagctgttctcggggca-tataaattcagatcataccgtgattctcggttat 1151
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 81404199 gatcttttcagctgttctcggggcattataaattcagatcataccgtgattctcggttat 81404258

                                     
Query: 1152     cagtgacatggaaataggact 1172
                |||||||||||||||||||||
Sbjct: 81404259 cagtgacatggaaataggact 81404279



 Score =  771 bits (389), Expect = 0.0
 Identities = 432/441 (97%), Gaps = 4/441 (0%)
 Strand = Plus / Minus

                                                                            
Query: 736      ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 795
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514675 ggacttcagtgaagatttcctacattggccacatgacccagagctccttggagacacatc 81514616

                                                                            
Query: 796      actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 855
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514615 actatgtggattgtggagccaattccacggctgtttagaaactggcctgggtttttccat 81514556

                                                                            
Query: 856      ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 915
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514555 ggcagtacctgtcagaagagacagcagcgcctgggcctgagctctatacctaccccaggg 81514496

                                                                            
Query: 916      ggtggaactgggggagaaa-tggttctctcaatccccagaaaacaccctcctgccacttg 974
                ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81514495 ggtggaactgggggagaaattggttctctcaatccccagaaaacaccctcctgccacttg 81514436

                                                                            
Query: 975      ggaggaaaactcctttctgtagcacagtatacgcttctcagaaacagcaggatcactgcc 1034
                |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 81514435 ggaggaaaactcctttctgtagcacagtgtacgcttctcagaaccagcaggatcactgcc 81514376

                                                                            
Query: 1035     tagtgcctagcatgtgcccagc-aatagtaggcactcggaagtttgaag-agttaattga 1092
                ||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 81514375 tagtgcctagcgtgtgcccagcaaatagtaggcactcggaggtttgaagaagttaattga 81514316

                                                                            
Query: 1093     gatcttttcagctgttctcggggca-tataaattcagatcataccgtgattctcggttat 1151
                ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 81514315 gatcttttcagctgttctcggggcattataaattcagatcataccgtgattctcagttat 81514256

                                     
Query: 1152     cagtgacatggaaataggact 1172
                |||||||||||||||||||||
Sbjct: 81514255 cagtgacatggaaataggact 81514235



 Score =  430 bits (217), Expect = e-118
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                            
Query: 51       aggacatgacacaagtgacacatcccggccatggggtcccagcattctgcctttgctcac 110
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399206 aggacatgacacaagtgacacatcccggccatggggtcccagcattctgcctttgctcac 81399265

                                                                            
Query: 111      cccccttcctgcaagagaagaaaagcagatgacagagagaacttcctggccgaacgggag 170
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399266 cccccttcctgcaagagaagaaaagcagatgacagagagaacttcctggccgaacgggag 81399325

                                                                            
Query: 171      caggaagaagccattgctcagttcccatatgtggagttcactgggcgagatagcatcacc 230
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81399326 caggaagaagccattgctcagttcccatatgtggagttcactgggcgagatagcatcacc 81399385

                                                     
Query: 231      tgtctcacttgccaggggacaggctacattccaacag 267
                |||||||||||||||||||||||||||||||||||||
Sbjct: 81399386 tgtctcacttgccaggggacaggctacattccaacag 81399422



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 332      taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 391
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401234 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 81401293

                                                                            
Query: 392      cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 451
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401294 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 81401353

                                                         
Query: 452      atttaataagcaggactcccttgtaatcctcgccatcacgg 492
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401354 atttaataagcaggactcccttgtaatcctcgccatcacgg 81401394



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                            
Query: 332      taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 391
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517282 taagcaatatgtcctcttgtctgtcctgctctgtctcctggcatctggtttggtggtttt 81517223

                                                                            
Query: 392      cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 451
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517222 cttcctgtttccacattcggtcctcgtggatgatgatggcatcaaagtggtgaaagtcac 81517163

                                                         
Query: 452      atttaataagcaggactcccttgtaatcctcgccatcacgg 492
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517162 atttaataagcaggactcccttgtaatcctcgccatcacgg 81517122



 Score =  285 bits (144), Expect = 3e-74
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                            
Query: 491      ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401483 ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 81401542

                                                                            
Query: 551      ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 610
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81401543 ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 81401602

                                        
Query: 611      tccaccgcggagcgagcacctggt 634
                ||||||||||||||||||||||||
Sbjct: 81401603 tccaccgcggagcgagcacctggt 81401626



 Score =  270 bits (136), Expect = 2e-69
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                            
Query: 491      ggccaccctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 550
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517033 ggccactctgaaaatcagaaactccaacttctacccagtggcggtgaccagcctgtccag 81516974

                                                                            
Query: 551      ccaggttcagtacatgaacaccgtggtcgggtcgtacttgacctccaacgtctccctcat 610
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 81516973 ccaggttcagtacatgaacactgtggtcgggtcgtacttgacctccaacgtctccctcat 81516914

                                        
Query: 611      tccaccgcggagcgagcacctggt 634
                ||||||||||||||||||||||||
Sbjct: 81516913 tccaccgcggagcgagcacctggt 81516890



 Score =  131 bits (66), Expect = 9e-28
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                            
Query: 266      agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 325
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81400674 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 81400733

                      
Query: 326      gagaac 331
                ||||||
Sbjct: 81400734 gagaac 81400739



 Score =  131 bits (66), Expect = 9e-28
 Identities = 66/66 (100%)
 Strand = Plus / Minus

                                                                            
Query: 266      agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 325
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81517851 agagcaagtaaatgagttggtggctttgatcccacacagtgatcagagattgcgtcctca 81517792

                      
Query: 326      gagaac 331
                ||||||
Sbjct: 81517791 gagaac 81517786



 Score =  109 bits (55), Expect = 3e-21
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                       
Query: 683      tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 737
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81402913 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 81402967



 Score =  109 bits (55), Expect = 3e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                       
Query: 683      tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 737
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81515602 tttcttctgcacgttgcccgacatcctggtgcacaacatagtggtcttcatgcgg 81515548



 Score =  103 bits (52), Expect = 2e-19
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                                    
Query: 2        attcggagcatgcgcaccgactgcgggcggctcggaagacctaagaggcagg 53
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81398611 attcggagcatgcgcaccgactgcgggcggctcggaagacctaagaggcagg 81398662



 Score =  101 bits (51), Expect = 8e-19
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                                   
Query: 632      ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 682
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81402075 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 81402125



 Score =  101 bits (51), Expect = 8e-19
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                                   
Query: 632      ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 682
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81516441 ggtgaattttactgccaaggctgagatgggaggaccattttcctatgtgta 81516391


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,122,970
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 15
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)