Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus]. 649 0.0
Alignment gi|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus]. 203 3e-52
>ref|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus].
Length = 579
Score = 649 bits (1673), Expect = 0.0
Identities = 332/379 (87%), Positives = 340/379 (89%)
Frame = +3
Query: 39 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 218
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 219 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 398
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 399 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 578
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 579 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 758
PGLQPSTQISNLGSTETLEETPSGLQDKSA SGHKHLTVEELFGTSL KEQP VVGL+SE
Sbjct: 181 PGLQPSTQISNLGSTETLEETPSGLQDKSAPSGHKHLTVEELFGTSLSKEQPAVVGLDSE 240
Query: 759 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 938
EVEKLPGD SQK N+G+ PAAH SVQPEVTT VLITPASIT
Sbjct: 241 EVEKLPGDASQK-EPNSFLPFSFEPGGAPQSENLGVHPAAHPSVQPEVTTLVLITPASIT 299
Query: 939 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPRQRSPLSSHPV 1118
QSSEKQAPSYAIPLH VLSP+LPAEAST QAPPSLPR TMMQ VKT PRQRSPL S PV
Sbjct: 300 QSSEKQAPSYAIPLHSVLSPSLPAEASTGQAPPSLPRKTTMMQTVKTAPRQRSPLLSQPV 359
Query: 1119 PELNQASLASRPNPFRAPL 1175
PEL+ ASL + +PFRAPL
Sbjct: 360 PELSHASLTASQSPFRAPL 378
>ref|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus].
Length = 581
Score = 203 bits (516), Expect = 3e-52
Identities = 114/254 (44%), Positives = 155/254 (61%), Gaps = 15/254 (5%)
Frame = +3
Query: 60 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 239
G+++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 11 GRDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGF 70
Query: 240 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 419
TI+NRL+M N EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 71 TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 130
Query: 420 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSNI-- 572
E ++ SP + G + + DIL ML++AKDEY E Q+ S+
Sbjct: 131 YEQLKAHHGTGAGASP-VSLGSGEGKEADILRMLTKAKDEYTKCKTCSEPKQISSSSAIH 189
Query: 573 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG--TSLPKEQ----P 734
+P L + GS + P D +HL++ LFG P ++ P
Sbjct: 190 DNPNLIKPIPVKPSGSRQQRGPRPGQTSDPEP----QHLSLTALFGKQDKAPCQEATGPP 245
Query: 735 TVVGLESEEVEKLP 776
+ L+ ++ EK P
Sbjct: 246 QTLPLQQQQPEKFP 259
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,325,723
Number of extensions: 1409663
Number of successful extensions: 5477
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5421
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849483.1| PREDICTED: similar to decapping enzyme isoform ... 646 0.0
Alignment gi|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [C... 201 9e-52
Alignment gi|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting... 102 7e-22
>ref|XP_849483.1| PREDICTED: similar to decapping enzyme isoform 1 [Canis familiaris].
Length = 554
Score = 646 bits (1666), Expect = 0.0
Identities = 323/379 (85%), Positives = 337/379 (88%)
Frame = +3
Query: 39 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 218
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 219 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 398
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 399 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 578
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 579 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 758
PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP V+GL+SE
Sbjct: 181 PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVMGLDSE 240
Query: 759 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 938
EVEKLPGD SQK N+G+RPAAHH V PEV PVLITPASIT
Sbjct: 241 EVEKLPGDASQKESSSLLPFSFEQSGGVPPSENLGVRPAAHHPVPPEVPAPVLITPASIT 300
Query: 939 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPRQRSPLSSHPV 1118
QS EKQAP YA+PL PVLSPTLPA+A TAQ PPSLPRN T+MQAVKTTPRQRSPL + PV
Sbjct: 301 QSGEKQAPGYAVPLRPVLSPTLPADAPTAQVPPSLPRNATIMQAVKTTPRQRSPLLTQPV 360
Query: 1119 PELNQASLASRPNPFRAPL 1175
PEL+ +L + +PFRAPL
Sbjct: 361 PELSHTNLTATQSPFRAPL 379
>ref|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [Canis familiaris].
Length = 612
Score = 201 bits (512), Expect = 9e-52
Identities = 137/389 (35%), Positives = 194/389 (49%), Gaps = 18/389 (4%)
Frame = +3
Query: 60 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 239
G+++SLAAL++HDPYI I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13 GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72
Query: 240 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 419
TI+NRL+M N EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132
Query: 420 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 572
E ++ Q SP N + + +DIL ML++AKDEY E Q+ S+
Sbjct: 133 YEQLKAHQGTGAGNSPMILNS-GEGKEVDILRMLTKAKDEYTKCKTCSEPKQITSSSAIY 191
Query: 573 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVG-- 746
+P L + + + P+ D +HL++ LFG VG
Sbjct: 192 DNPNLIKPIPVKPSENQQQRVPRPNQTLDSEC----QHLSLTALFGKQDKSPCQEAVGSP 247
Query: 747 --LESEEVEKLPGDD----SQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTT 908
+ ++ + LP S + +R A H
Sbjct: 248 QTIHQQQQQPLPMRQGVVRSLSYEEPRRHSPPSEKQLCPAIQKLMVRSADLH-------- 299
Query: 909 PVLITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPR 1088
P+ P + + + + L PV P P T+Q S R ++++ +++ PR
Sbjct: 300 PLSELPENRPCRNGSTHSAGEVFLGPV-QPGSPHSVGTSQHVQSTSRTQSLLEKLQSAPR 358
Query: 1089 QRSPLS-SHPVPELNQASLASRPNPFRAP 1172
+ S P P + A S P AP
Sbjct: 359 PANKYDPSTPAPASSAAPSLSTTVPTAAP 387
>ref|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting transcription
coactivator 1 isoform 2 [Canis familiaris].
Length = 57
Score = 102 bits (254), Expect = 7e-22
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 69 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 212
MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR
Sbjct: 1 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 48
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,344,615
Number of extensions: 1443964
Number of successful extensions: 5963
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5925
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens]. 647 0.0
Alignment gi|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens]. 198 7e-51
>ref|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens].
Length = 582
Score = 647 bits (1668), Expect = 0.0
Identities = 324/379 (85%), Positives = 339/379 (89%)
Frame = +3
Query: 39 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 218
ME+LSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MEALSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 219 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 398
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 399 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 578
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 579 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 758
PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP VVGL+SE
Sbjct: 181 PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVVGLDSE 240
Query: 759 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 938
E+E+LPGD SQK +G+ AAHHSVQPE+TTPVLITPASIT
Sbjct: 241 EMERLPGDASQKEPNSFLPFPFEQLGGAPQSETLGVPSAAHHSVQPEITTPVLITPASIT 300
Query: 939 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPRQRSPLSSHPV 1118
QS+EK AP+Y IPL PVLSPTLPAEA TAQ PPSLPRN TMMQAVKTTPRQRSPL + PV
Sbjct: 301 QSNEKHAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPRNSTMMQAVKTTPRQRSPLLNQPV 360
Query: 1119 PELNQASLASRPNPFRAPL 1175
PEL+ ASL + +PFRAPL
Sbjct: 361 PELSHASLIANQSPFRAPL 379
>ref|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens].
Length = 617
Score = 198 bits (504), Expect = 7e-51
Identities = 96/163 (58%), Positives = 122/163 (74%)
Frame = +3
Query: 60 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 239
G+++SLAAL++HDPYI I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13 GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72
Query: 240 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 419
TI+NRL+M N EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132
Query: 420 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER 548
E ++ Q SP N + + +DIL ML +AKDEY +
Sbjct: 133 YEQLKAHQGTGAGISPVILNS-GEGKEVDILRMLIKAKDEYTK 174
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,485,418
Number of extensions: 1424355
Number of successful extensions: 5840
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5777
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus]. 626 e-180
Alignment gi|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus]. 197 2e-50
>ref|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus].
Length = 602
Score = 626 bits (1615), Expect = e-180
Identities = 319/391 (81%), Positives = 337/391 (86%)
Frame = +3
Query: 3 RPR*RG*ALEFKMESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKT 182
RPR RG AL KME LSRA QEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKT
Sbjct: 9 RPRRRGSALRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKT 68
Query: 183 DIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIW 362
DIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIW
Sbjct: 69 DIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIW 128
Query: 363 FYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY 542
FYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSP+QANGCSD RPIDILEMLSRAKDEY
Sbjct: 129 FYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPSQANGCSDQRPIDILEMLSRAKDEY 188
Query: 543 ERNQMGDSNISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLP 722
ERNQMG SNISSPGLQPSTQ+SNLGSTETLEETPSG QDKSA SGHKHLTVEELFGTSLP
Sbjct: 189 ERNQMGGSNISSPGLQPSTQLSNLGSTETLEETPSGSQDKSAPSGHKHLTVEELFGTSLP 248
Query: 723 KEQPTVVGLESEEVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEV 902
KEQPT +GLESE+ +KL GD SQK N+GI AAHH+VQPEV
Sbjct: 249 KEQPTAMGLESEDTDKLLGDASQKEPSSFLPFPFEQSGGAPQSENLGIHSAAHHTVQPEV 308
Query: 903 TTPVLITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTT 1082
+TPVLITPASI QS +K PSY +PL PVLSPTLPAEA T Q P LPRN TM+QAVKTT
Sbjct: 309 STPVLITPASIAQSGDKHPPSYTLPLSPVLSPTLPAEAPTTQV-PHLPRNSTMIQAVKTT 367
Query: 1083 PRQRSPLSSHPVPELNQASLASRPNPFRAPL 1175
PRQ+SPL + PVPEL+ +SL + +PFRAP+
Sbjct: 368 PRQKSPLLNQPVPELSHSSLVASQSPFRAPV 398
>ref|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus].
Length = 578
Score = 197 bits (500), Expect = 2e-50
Identities = 109/226 (48%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Frame = +3
Query: 60 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 239
G ++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKT +EGTLFVY RSASP HGF
Sbjct: 13 GHDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGF 72
Query: 240 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 419
TI+NRL+M N EP+ KDL+FQL PFLLYRN +LSIY IWFYDK +C RIAKLM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQ 132
Query: 420 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 572
E ++ A SP + + + +DIL+ML++AKDEY E QM +S+
Sbjct: 133 SEQLKACHGA--GSSPVTLSS-GEGQEVDILQMLTKAKDEYTKCKTCSEPKQMTNSSAIC 189
Query: 573 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG 710
+P L + S PS D +HL++ LFG
Sbjct: 190 DNPKLIKPVPVRPSSSQRLQGPAPSKTSDPEP----QHLSLTALFG 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,970,269
Number of extensions: 1194852
Number of successful extensions: 4611
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4568
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform ... 689 0.0
Alignment gi|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform ... 597 e-171
Alignment gi|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Su... 201 7e-52
>ref|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform 1 [Sus scrofa].
Length = 580
Score = 689 bits (1779), Expect = 0.0
Identities = 349/379 (92%), Positives = 354/379 (93%)
Frame = +3
Query: 39 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 218
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 219 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 398
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 399 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 578
LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 579 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 758
PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 181 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 240
Query: 759 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 938
EVEKLPGD SQK NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 241 EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 300
Query: 939 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPRQRSPLSSHPV 1118
QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPR+ TMMQAVKTTPRQRSPLSS PV
Sbjct: 301 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 360
Query: 1119 PELNQASLASRPNPFRAPL 1175
PEL+QASLA+ +PFRAPL
Sbjct: 361 PELSQASLAASQSPFRAPL 379
>ref|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform 2 [Sus scrofa].
Length = 542
Score = 597 bits (1538), Expect = e-171
Identities = 311/379 (82%), Positives = 316/379 (83%)
Frame = +3
Query: 39 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 218
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 219 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 398
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 399 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 578
LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER
Sbjct: 121 LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER---------- 170
Query: 579 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 758
SALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 171 ----------------------------SALSGHKHLTVEELFGTSLPKEQPTVVGLESE 202
Query: 759 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 938
EVEKLPGD SQK NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 203 EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 262
Query: 939 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRNHTMMQAVKTTPRQRSPLSSHPV 1118
QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPR+ TMMQAVKTTPRQRSPLSS PV
Sbjct: 263 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 322
Query: 1119 PELNQASLASRPNPFRAPL 1175
PEL+QASLA+ +PFRAPL
Sbjct: 323 PELSQASLAASQSPFRAPL 341
>ref|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Sus scrofa].
Length = 559
Score = 201 bits (511), Expect = 7e-52
Identities = 109/231 (47%), Positives = 146/231 (63%), Gaps = 14/231 (6%)
Frame = +3
Query: 60 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 239
G+++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 12 GRDISLAALRRHDPYISHIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 71
Query: 240 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 419
TI+NRL+M N EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 72 TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 131
Query: 420 EETRRSQQ-----AARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGD 563
E ++ AA P G + R +DIL ML++A+DEY E Q+
Sbjct: 132 YEQLKAHHGTGAGAAARAGGPTMTLGSGESREVDILRMLTKARDEYTKCKTCSEPKQITS 191
Query: 564 SN--ISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG 710
S+ ++P L + G+ + PS D +HL++ LFG
Sbjct: 192 SSAIYNNPNLIKPIPVKPSGNRQQRIPQPSQTLDPEP----QHLSLMALFG 238
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,147,287
Number of extensions: 907578
Number of successful extensions: 3713
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3688
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002624
(1175 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 910 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 910 bits (459), Expect = 0.0
Identities = 501/515 (97%)
Strand = Plus / Minus
Query: 661 agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472118 agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 38472059
Query: 721 caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472058 caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 38471999
Query: 781 atgactcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471998 atgcctcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 38471939
Query: 841 gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471938 gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 38471879
Query: 901 tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471878 tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 38471819
Query: 961 caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471818 caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 38471759
Query: 1021 ctgcacaggctcctcccagcttaccccgaaaccacaccatgatgcaggcagtgaagacca 1080
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 38471758 ctgcacaggctcctcccagcttaccccgaagcaccaccatgatgcaggcagtgaagacca 38471699
Query: 1081 cgcctagacaaaggtctccactctcaagtcacccagttcctgaactgaaccaggccagtc 1140
||||||||||||||||||||||||| ||||| ||||| ||||| |||| |||||||||||
Sbjct: 38471698 cgcctagacaaaggtctccactctcgagtcagccagtccctgagctgagccaggccagtc 38471639
Query: 1141 tggcttcccgcccaaacccattcagggccccactg 1175
||||| || ||| | |||||||||||||||||||
Sbjct: 38471638 tggctgccagccagagcccattcagggccccactg 38471604
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1 tccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctgagtcgagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525317 tccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctgagtcgagctg 38525258
Query: 61 ggcaggagatgagcctagcggccctgaagcaacacgacccctacatcaccagcatcgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525257 ggcaggagatgagcctagcggccctgaagcaacacgacccctacatcaccagcatcgcag 38525198
Query: 121 atctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccagtggg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525197 atctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccagtggg 38525144
Score = 268 bits (135), Expect = 6e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 410 cgtggtagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 469
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483464 cgtgttagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 38483405
Query: 470 ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483404 ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 38483345
Query: 530 caaggatgagtatgagagg 548
|||||||||||||||||||
Sbjct: 38483344 caaggatgagtatgagagg 38483326
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 212 aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518735 aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 38518676
Query: 272 agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518675 agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 38518616
Query: 332 aaatgcaagct 342
|||||||||||
Sbjct: 38518615 aaatgcaagct 38518605
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 548 gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481633 gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 38481574
Query: 608 caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481573 caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 38481519
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 343 tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38489768 tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 38489709
Query: 403 tggccga 409
|||||||
Sbjct: 38489708 tggccga 38489702
Score = 91.7 bits (46), Expect = 8e-16
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 173 ggagaagactgatatagaagggaccttatttgtatatcgaaggtcagctt 222
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 38521678 ggagaagactgatatagaagggaccttatttgtatatcgaaggtaagctt 38521629
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,381,965
Number of extensions: 171
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 7
Length of query: 1175
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1154
Effective length of database: 2,808,413,156
Effective search space: 3240908782024
Effective search space used: 3240908782024
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)