Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693515.1| PREDICTED: signal peptidase complex subunit ... 389 e-108
Alignment gi|XP_001254330.2| PREDICTED: signal peptidase complex subunit ... 389 e-108
>ref|XP_002693515.1| PREDICTED: signal peptidase complex subunit 2 homolog [Bos taurus].
Length = 226
Score = 389 bits (999), Expect = e-108
Identities = 191/192 (99%), Positives = 191/192 (99%)
Frame = +1
Query: 127 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 306
LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRL ICTISCFF
Sbjct: 35 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLIICTISCFF 94
Query: 307 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 486
AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD
Sbjct: 95 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 154
Query: 487 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 666
DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR
Sbjct: 155 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 214
Query: 667 LHDSLATERKIK 702
LHDSLATERKIK
Sbjct: 215 LHDSLATERKIK 226
>ref|XP_001254330.2| PREDICTED: signal peptidase complex subunit 2 homolog [Bos taurus].
Length = 226
Score = 389 bits (999), Expect = e-108
Identities = 191/192 (99%), Positives = 191/192 (99%)
Frame = +1
Query: 127 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 306
LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRL ICTISCFF
Sbjct: 35 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLIICTISCFF 94
Query: 307 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 486
AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD
Sbjct: 95 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 154
Query: 487 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 666
DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR
Sbjct: 155 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 214
Query: 667 LHDSLATERKIK 702
LHDSLATERKIK
Sbjct: 215 LHDSLATERKIK 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,557,447
Number of extensions: 1041106
Number of successful extensions: 2463
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2463
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003324.1| signal peptidase complex subunit 2 [Canis lu... 391 e-109
>ref|NP_001003324.1| signal peptidase complex subunit 2 [Canis lupus familiaris].
Length = 226
Score = 391 bits (1005), Expect = e-109
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +1
Query: 127 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 306
LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF
Sbjct: 35 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 94
Query: 307 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 486
AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD
Sbjct: 95 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 154
Query: 487 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 666
DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR
Sbjct: 155 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 214
Query: 667 LHDSLATERKIK 702
LHDSLATERKIK
Sbjct: 215 LHDSLATERKIK 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,552,854
Number of extensions: 1071528
Number of successful extensions: 2394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2393
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055567.2| signal peptidase complex subunit 2 [Homo sapien... 389 e-108
>ref|NP_055567.2| signal peptidase complex subunit 2 [Homo sapiens].
Length = 226
Score = 389 bits (999), Expect = e-108
Identities = 191/192 (99%), Positives = 191/192 (99%)
Frame = +1
Query: 127 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 306
LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF
Sbjct: 35 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 94
Query: 307 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 486
AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD
Sbjct: 95 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 154
Query: 487 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 666
DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR
Sbjct: 155 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 214
Query: 667 LHDSLATERKIK 702
LHDSLA ERKIK
Sbjct: 215 LHDSLAIERKIK 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,906,640
Number of extensions: 1069635
Number of successful extensions: 2511
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2511
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079944.1| signal peptidase complex subunit 2 [Mus musculu... 391 e-109
>ref|NP_079944.1| signal peptidase complex subunit 2 [Mus musculus].
Length = 226
Score = 391 bits (1005), Expect = e-109
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +1
Query: 127 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 306
LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF
Sbjct: 35 LLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFF 94
Query: 307 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 486
AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD
Sbjct: 95 AIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPD 154
Query: 487 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 666
DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR
Sbjct: 155 DIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISR 214
Query: 667 LHDSLATERKIK 702
LHDSLATERKIK
Sbjct: 215 LHDSLATERKIK 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,515,051
Number of extensions: 927919
Number of successful extensions: 2203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2202
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,552,373
Number of extensions: 661080
Number of successful extensions: 1585
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 0
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002632
(1421 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1737 0.0
Sscrofa_Chr02 547 e-153
Sscrofa_Chr01 264 1e-67
Sscrofa_Chr13 107 2e-20
Sscrofa_Chr07 76 6e-11
>Sscrofa_Chr09
|| Length = 153670197
Score = 1737 bits (876), Expect = 0.0
Identities = 890/897 (99%)
Strand = Plus / Plus
Query: 517 aggttcgatgacaaatacactctgaagctgaccttcatcagtggaagaacaaagcagcaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396339 aggttcgatgacaaatacactctgaagctgaccttcatcagtggaagaacaaagcagcaa 10396398
Query: 577 cgggaagccgagttcaccaagtccattgctaagttttttgaccacagtgggacactggtc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396399 cgggaagccgagttcaccaagtccattgctaagttttttgaccacagtgggacactggtc 10396458
Query: 637 atggatgcatacgagcctgaaatatcaaggctccatgacagtctcgccacagaaagaaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396459 atggatgcatacgagcctgaaatatcaaggctccatgacagtctcgccacagaaagaaaa 10396518
Query: 697 ataaaatagccagttctaaaagcagccatctttctgctggatcgtgctgaatcgaagggt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396519 ataaaatagccagttctaaaagcagccatctttctgctggatcgtgctgaatcgaagggt 10396578
Query: 757 gagggaaaagaaatagaagccctaaaatggattaacgtaagagatattaaaaatgtcccc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396579 gagggaaaagaaatagaagccctaaaatggattaacgtaagagatattaaaaatgtcccc 10396638
Query: 817 attttgtcctaaagttttagtctattctggataaataggattttctagctcagatatgag 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396639 attttgtcctaaagttttagtctattctggataaataggattttctagctcagatatgag 10396698
Query: 877 aagttgtagctctgatagctagctatagcctctttggtctgctgattgcattgttttgat 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396699 aagttgtagctctgatagctagctatagcctctttggtctgctgattgcattgttttgat 10396758
Query: 937 ttgcttttctggaaaagcatttttgctaagagctgtacaaattcttccttcatacctagc 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396759 ttgcttttctggaaaagcatttttgctaagagctgtacaaattcttccttcatacctagc 10396818
Query: 997 agtactttatatagtatagctttgtgccatgccgcctctgaagactcagtttaattgtta 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396819 agtactttatatagtatagctttgtgccatgccgcctctgaagactcagtttaattgtta 10396878
Query: 1057 acctgttgctaactttattgtgttaatgcccgtttcaatagctgtttcccttaattcagg 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396879 acctgttgctaactttattgtgttaatgcccgtttcaatagctgtttcccttaattcagg 10396938
Query: 1117 atacaacttcttgtgtacaacaattttctttcacacaccgtttttgtgggtgtgtatata 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396939 atacaacttcttgtgtacaacaattttctttcacacaccgtttttgtgggtgtgtatata 10396998
Query: 1177 tctgacttggggagaattgggggaagaaaacacagctttttaattcgtttaaaaaagact 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396999 tctgacttggggagaattgggggaagaaaacacagctttttaattcgtttaaaaaagact 10397058
Query: 1237 ttttgcctgttacatttttgtgctcttaaccaattaaagaagccaatggtatttttagtt 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10397059 ttttgcctgttacatttttgtgctcttaaccaattaaagaagccaatggtatttttagtt 10397118
Query: 1297 ttatcttgtctatgttttccactagtatatccctgttgatttccctgttgatttgtttgt 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10397119 ttatcttgtctatgttttccactagtatatccctgttgatttccctgttgatttgtttgt 10397178
Query: 1357 gccctttattaactgccgttttctaaaannnnnnncaataaaaggaaagaagatgtg 1413
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10397179 gccctttattaactgccgttttctaaaatttttttcaataaaaggaaagaagatgtg 10397235
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 221 aggtacttctggaaaagtacaagtatgtggagaattttggtctaattgacggtcgcctca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384066 aggtacttctggaaaagtacaagtatgtggagaattttggtctaattgacggtcgcctca 10384125
Query: 281 ccatctgtaccatctcctgtttctttgccatagtggctttgatttgggattatatgcacc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384126 ccatctgtaccatctcctgtttctttgccatagtggctttgatttgggattatatgcacc 10384185
Query: 341 cctttccagagtccaagcctgttttggctttgtgtgtcatatc 383
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384186 cctttccagagtccaagcctgttttggctttgtgtgtcatatc 10384228
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gagggagacgcacaggcaggaaagatggcggcggcggctgctcagggtgggagatccggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372454 gagggagacgcacaggcaggaaagatggcggcggcggctgctcagggtgggagatccggt 10372513
Query: 61 ggtggcggaggcagtagtggggctggcggcggtcccagctgcgggacgggcagtagccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372514 ggtggcggaggcagtagtggggctggcggcggtcccagctgcgggacgggcagtagccgt 10372573
Query: 121 agcggcttgttggacaag 138
||||||||||||||||||
Sbjct: 10372574 agcggcttgttggacaag 10372591
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 383 cctattttgtgatgatggggatcctgaccatttatacgtcgtataaggagaagagcattt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10390817 cctattttgtgatgatggggatcctgaccatttatacgtcgtataaggagaagagcattt 10390876
Query: 443 tcctcgtggcccacaggaaagatcctacagggatggatccggatgatatttggcagctgt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10390877 tcctcgtggcccacaggaaagatcctacagggatggatccggatgatatttggcagctgt 10390936
Query: 503 catccagtctcaaaaggt 520
||||||||||||||||||
Sbjct: 10390937 catccagtctcaaaaggt 10390954
Score = 168 bits (85), Expect = 5e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 137 agtggaagattgatgataagcctgtgaaaattgacaaatgggatggatcggctgtgaaaa 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10383154 agtggaagattgatgataagcctgtgaaaattgacaaatgggatggatcggctgtgaaaa 10383213
Query: 197 attctttggatgattccgccaaaaaggta 225
|||||||||||||||| ||||||||||||
Sbjct: 10383214 attctttggatgattctgccaaaaaggta 10383242
>Sscrofa_Chr02
|| Length = 162569375
Score = 547 bits (276), Expect = e-153
Identities = 663/778 (85%), Gaps = 23/778 (2%)
Strand = Plus / Plus
Query: 456 caggaaagatcctacagggatggatccggatgatatttggcagctgtcatccagtctcaa 515
|||| |||||||| ||||||||||||| || |||| |||||||| | ||||||||||||
Sbjct: 142595109 caggcaagatccttcagggatggatcctgaggatacctggcagctattatccagtctcaa 142595168
Query: 516 aaggttcgatgacaaatacactctgaagctgaccttcatcagtggaagaacaaagcagca 575
||| | ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 142595169 aagttctgataacagatacactctgaagctgaccttcatcagtggaagaacagagcagca 142595228
Query: 576 acgggaagccgagttcacca-agtccattgctaagttttttgaccacagtgggacactgg 634
| |||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||
Sbjct: 142595229 gcaggaagccgagttcacctgagtccattgctaaggtttttgaccacagcgagacactgg 142595288
Query: 635 tcatggatgcatacgagcctgaaatatcaaggctccatgacagtctcgccacagaaagaa 694
|| || |||||| | |||||||||||| |||||||||||||||||| | |||| |||
Sbjct: 142595289 tcttgtatgcatctgcgcctgaaatatcgaggctccatgacagtctcccaacaggg-gaa 142595347
Query: 695 aaataaaatagccagttctaaaagcagccatctttctgctggatcgtgctgaatcgaagg 754
||| |||| ||||||||||||||| ||||||||||||||| |||||||| | ||
Sbjct: 142595348 aaaaaaaa------gttctaaaagcagccgtctttctgctggatcatgctgaattaaggg 142595401
Query: 755 gtgaggga-aaagaaatagaagccctaaaatggattaacgtaagagatattaaaaatgtc 813
||||||| ||||||| ||| | |||||||||| ||||||||||| ||| |||||||
Sbjct: 142595402 ctgagggagaaagaaacagagaacttaaaatggat-aacgtaagagacgttacaaatgtc 142595460
Query: 814 cccattttgtcctaaagttttagtctattctggataaataggattttctagctcagatat 873
|| ||||||| |||| ||||||||| | |||||||| |||||||| |||||||| ||
Sbjct: 142595461 ccg-ttttgtcataaaattttagtctctactggataa-taggatttgctagctca-attc 142595517
Query: 874 gagaagttgtagctctgatagctagctatagcctctttggtctgctgattgcattgtttt 933
||||||||||||||||| | |||||| |||| ||||||||||||||| ||||||||||
Sbjct: 142595518 gagaagttgtagctctgctctctagctgtagctcctttggtctgctgatggcattgtttt 142595577
Query: 934 gatttgcttttctggaaaagcatttttgctaagagctgta-caaattcttccttcatacc 992
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |
Sbjct: 142595578 gatttgcttttctggaaaagcatttttgctaaaagccatagaaaattcttccttcatatc 142595637
Query: 993 tagcagtactttatatagtatagctttgtgccatgccgcctctgaagactcag-----tt 1047
|||||||| ||||| | ||||||||||||| |||| || | | ||||||||| ||
Sbjct: 142595638 tagcagtattttatgtcatatagctttgtgctatgcagcatttcaagactcaggcttttt 142595697
Query: 1048 taattgttaacctgttgctaactttattgtgttaatgcccgtttcaatagctgtttccct 1107
|||||||||||||||||| |||||||||||||||| || ||||||| ||||| ||||||
Sbjct: 142595698 gaattgttaacctgttgctgactttattgtgttaattcctgtttcaacagctgcttccct 142595757
Query: 1108 t-aattcaggatacaacttcttgtgtacaacaattttctttcacacaccgtttttgtggg 1166
| |||||||| | ||||||||||||| ||||||||| |||||||| | |||||| | |
Sbjct: 142595758 taaattcagggcataacttcttgtgtatgacaattttccttcacacagcatttttgggag 142595817
Query: 1167 tgtgtatatat-ctgacttggggagaattgggggaagaaaa--cacagctttttaatt 1221
||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 142595818 tgtgtatatatcctgacttggggagaattgtgggaaaaaaacccacagctttttaatt 142595875
Score = 299 bits (151), Expect = 2e-78
Identities = 275/314 (87%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 59 gtggtggcggaggcagtagtggggctggcggcggtcccagctgcgggacgggcagtagcc 118
||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||
Sbjct: 142594773 gtggtggcggaggcagtagcagg-ctggcggtggtcccagctgcgggacaggcagtagct 142594831
Query: 119 gtagcggcttgttggacaagtggaagattgatgataagcctgtgaaaattgacaaatggg 178
| || | | ||||||| |||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 142594832 gcggcaggtctttggacatgtggaagattgatgataagcctgtaaaaatggacagatggg 142594891
Query: 179 atggatcggctgtgaaaaattctttggatgattccgccaaaaaggtacttctggaaaagt 238
||||||| |||||||| |||| | |||||| |||||||||||||||||||||||||
Sbjct: 142594892 atggatcacttgtgaaaa--tcttcaggtgattctgccaaaaaggtacttctggaaaagt 142594949
Query: 239 acaagtatgtggagaattttggtctaattgacggtcgcctcaccatctgtaccatctcct 298
||||||||||||||||||||| | |||||||| |||||||||| ||||||| |||| |
Sbjct: 142594950 acaagtatgtggagaattttgctttaattgacagtcgcctcactgtctgtactgtctctt 142595009
Query: 299 gtttctttgccatagtggctttgatttgggattatatgcacccctttccagagtccaagc 358
|||||||||||| |||||||| |||| ||||||||| ||||||||||||||||| ||||
Sbjct: 142595010 gtttctttgccacagtggcttcgattggggattatacacacccctttccagagtcgaagc 142595069
Query: 359 ctgttttggctttg 372
||||||||||||||
Sbjct: 142595070 ctgttttggctttg 142595083
Score = 113 bits (57), Expect = 3e-22
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1209 cagctttttaattcgtttaaaaaagactttttgcctgttacatttttgtgctcttaacca 1268
||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| |||||||
Sbjct: 142596141 cagctttttaatttgtttaaaagagactttctgcctgttaca-ttttgtgcttttaacca 142596199
Query: 1269 attaaagaagccaatggtattttta 1293
||||||||||||||||||||||||
Sbjct: 142596200 gttaaagaagccaatggtattttta 142596224
>Sscrofa_Chr01
|| Length = 315321322
Score = 264 bits (133), Expect = 1e-67
Identities = 298/348 (85%), Gaps = 5/348 (1%)
Strand = Plus / Plus
Query: 276 cctcaccatctgtaccatctcctgtttctttgccatagtggctttgatttgggattatat 335
||||| ||||||| ||||||| || |||||||||||||| |||||||| |||| || |||
Sbjct: 192919825 cctcatcatctgtgccatctcttgcttctttgccatagtagctttgatatggggttgtat 192919884
Query: 336 gcacccctttccagagtccaagcctgttttggctttgtgtgtcatatcctattttgtgat 395
||| |||| ||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct: 192919885 acactccttcccagagtccaaacctgttttggctttgcacatcataccctattttgtgat 192919944
Query: 396 gatggggatcctgaccatttatacgtcgtataaggagaagagcattttcctcgtggccca 455
||| |||||||||||||||||| | | ||||||||||||||| || ||| || ||||
Sbjct: 192919945 tatgtagatcctgaccatttatac--catctaaggagaagagcatctttctcctgaccca 192920002
Query: 456 caggaaagatcctacagggatggatccggatgatatttggcagctgtcatccagtctcaa 515
||||||||||| ||||||||||||||| ||||||||| |||| || |||||||||||
Sbjct: 192920003 caggaaagatc-tacagggatggatcctgatgatatt-ggcaactactgtccagtctcaa 192920060
Query: 516 aaggttcgatgacaaatacactctgaagctgaccttcatcagtggaagaacaaagcagca 575
||||||| || ||| || |||||| |||||||||||||||| ||||||| || |||| |
Sbjct: 192920061 aaggttcaataacagattcactctaaagctgaccttcatca-tggaagatcagggcagga 192920119
Query: 576 acgggaagccgagttcaccaagtccattgctaagttttttgaccacag 623
| |||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct: 192920120 atgggaagtcgagttccccaagtccattgctaagatttttgaccacag 192920167
Score = 131 bits (66), Expect = 1e-27
Identities = 309/387 (79%), Gaps = 6/387 (1%)
Strand = Plus / Plus
Query: 806 aaaatgtccccattttgtcctaaagttttagtctattctggataaataggattttctagc 865
|||||||||| || | |||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 192920361 aaaatgtccctgttctctcctgaaattttagtccattctggacaaataggattttctagc 192920420
Query: 866 tcagatatgagaagttgtagctctgatagctagctatagcctctttggtctgctgattgc 925
| ||||||||| ||||||||||||| | | ||| ||||||||||||||||||| ||||
Sbjct: 192920421 tt-gatatgagaggttgtagctctgacatccagccatagcctctttggtctgcttattgt 192920479
Query: 926 attgttttgatttgcttttctggaaaagcatttttgctaagagctgtaca-aattcttcc 984
||| ||||||||||| ||||||||||||||||| ||| || ||||| | ||| |||
Sbjct: 192920480 gcggttctgatttgctttcctggaaaagcatttttgttaaaagtggtacagacttcctcc 192920539
Query: 985 ttcatacctagcagtactttatatagtatagctttgtgccatgccgcctctgaagactca 1044
|| |||||| ||| || ||| || |||||||||||| || || | | |||||| |
Sbjct: 192920540 tttataccttgcattattttgcatcatatagctttgtgtaataaagcttttaaagactta 192920599
Query: 1045 gttt----aattgttaacctgttgctaactttattgtgttaatgcccgtttcaatagctg 1100
||| || |||||||||| | || | ||| ||||||||| || | ||||| |||||
Sbjct: 192920600 atttttaaaactgttaacctgctcctgatgttactgtgttaattcctgcttcaacagctg 192920659
Query: 1101 tttcccttaattcaggatacaacttcttgtgtacaacaattttctttcacacaccgtttt 1160
|| | |||||||||||||| | || ||||||| || |||| |||||||||| ||||
Sbjct: 192920660 ttctctttaattcaggatacgattttttgtgtatgtcagctttccttcacacaccatttt 192920719
Query: 1161 tgtgggtgtgtatatatctgacttggg 1187
||||||||| |||||||| ||| ||||
Sbjct: 192920720 tgtgggtgtttatatatccgacgtggg 192920746
Score = 107 bits (54), Expect = 2e-20
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 133 gacaagtggaagattgatgataagcctgtgaaaattgacaaatgggatggatcggctgtg 192
||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||| ||||||
Sbjct: 192919669 gacaagtggaagactgatgataagcctgtaaaaattgacaaat-ggatgtatcagctgtg 192919727
Query: 193 aaaaattctttggatgattccgccaaaaag 222
||||||| ||||||||||| |||||||||
Sbjct: 192919728 aaaaattacttggatgattctgccaaaaag 192919757
Score = 71.9 bits (36), Expect = 9e-10
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 831 ttttagtctattctggataaataggattttctagctcagatatgagaagttgtagctctg 890
|||||||| || | ||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 266687409 ttttagtccatccaggataaagaggattttctagcaccaatatgagaagttgtagctctg 266687350
Query: 891 atagctag 898
||| ||||
Sbjct: 266687349 atatctag 266687342
Score = 67.9 bits (34), Expect = 1e-08
Identities = 111/135 (82%), Gaps = 5/135 (3%)
Strand = Plus / Minus
Query: 601 attgctaagttttttgaccacagtgggacactggtcatggatgcatacgagcctgaaata 660
|||||||||||||| ||||||| ||||||||||| |||||||| ||||||||| |
Sbjct: 266687757 attgctaagttttta-accacagcaagacactggtcacagatgcatatgagcctgaagca 266687699
Query: 661 tcaaggctccatgacagtctcgccacagaaagaaaaataaaatagccagttctaaaagca 720
|| |||||| | ||||||| |||||||||||| |||| ||||| ||||||||| |
Sbjct: 266687698 tccaggctctgtaacagtcttaccacagaaagaa----aaaacagccacttctaaaagaa 266687643
Query: 721 gccatctttctgctg 735
||||||||||||||
Sbjct: 266687642 cccatctttctgctg 266687628
Score = 61.9 bits (31), Expect = 9e-07
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 505 tccagtctcaaaaggttcgatgacaaatacactctgaagctgaccttcatcagtggaaga 564
|||||||| |||||||| |||||||||| || ||||||||||||||||||| || | |
Sbjct: 266687842 tccagtctataaaggttcaatgacaaata-accctgaagctgaccttcatcactgaaggg 266687784
Query: 565 acaaagcagca 575
|||||||||||
Sbjct: 266687783 acaaagcagca 266687773
>Sscrofa_Chr13
|| Length = 218635234
Score = 107 bits (54), Expect = 2e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1252 ttttgtgctcttaaccaattaaagaagccaatggtatttttagttttatcttgtctatgt 1311
|||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| |||
Sbjct: 194878117 ttttgttctcttaaccaattaaagaagccagtggcatttttagttttattttgtctgtgt 194878058
Query: 1312 tttccactagtatatccctgttgatt 1337
||||||| ||||||||| |||||||
Sbjct: 194878057 tttccacaggtatatccccgttgatt 194878032
>Sscrofa_Chr07
|| Length = 134764511
Score = 75.8 bits (38), Expect = 6e-11
Identities = 113/135 (83%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 1203 aaaacacagctttttaattcgtttaaaaaagactttttgcctgttacatttttgtgctct 1262
||||||||||||||||||| |||| ||| ||||||| ||||||||||| |||||||| |
Sbjct: 134085777 aaaacacagctttttaatttgtttgaaacagactttctgcctgttaca-ttttgtgcatt 134085719
Query: 1263 taaccaattaaagaagccaatggtatttttagttttatcttgtctatgttttccactagt 1322
||||| | |||||| |||| ||||| |||||||||||| | | |||| ||||||||
Sbjct: 134085718 taacctgt----gaagcccatggcattttcagttttatcttg-ccaggtttcccactagt 134085664
Query: 1323 atatccctgttgatt 1337
| |||||| ||||||
Sbjct: 134085663 aaatccctcttgatt 134085649
Score = 65.9 bits (33), Expect = 6e-08
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 1072 tattgtgttaatgcccgtttcaatagctgtttcccttaattcaggatacaacttcttgtg 1131
||||||||||| || || ||||||||||||||||||||||| ||||| ||| ||||| |
Sbjct: 134086471 tattgtgttaactcctgtgtcaatagctgtttcccttaattcgggatataacctcttgcg 134086412
Query: 1132 tacaacaattttctttcacacaccgtttttgtgggtgtgtatatatctgacttgggg 1188
|| ||| | ||| |||| ||| |||| |||||||||| | ||||||| ||||||
Sbjct: 134086411 taggacagtgttccttcatgtaccattttagtgggtgtgtgtgtatctgagttgggg 134086355
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,678,951
Number of extensions: 913
Number of successful extensions: 913
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 22
Length of query: 1421
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1400
Effective length of database: 2,808,413,156
Effective search space: 3931778418400
Effective search space used: 3931778418400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)