Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus]. 518 e-147
Alignment gi|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus]. 385 e-107
Alignment gi|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [B... 347 1e-95
Alignment gi|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos ... 345 5e-95
Alignment gi|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus]. 111 1e-24
Alignment gi|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus]. 63 6e-10
>ref|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus].
Length = 305
Score = 518 bits (1335), Expect = e-147
Identities = 249/268 (92%), Positives = 257/268 (95%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
VTLLDPNEKY LRLLDKTTVNHNTK+FRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP
Sbjct: 38 VTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 97
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GDVVEFRGPSGLLTY G
Sbjct: 98 YTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAG 157
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+IQPNKK+PPE RVAR LGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE
Sbjct: 158 KGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 217
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDIILREDLEELQARHP +FKLWFTLD PPE W YSKGFVS DMIREHLPAP EDVLLLL
Sbjct: 218 KDIILREDLEELQARHPGRFKLWFTLDHPPEGWAYSKGFVSVDMIREHLPAPGEDVLLLL 277
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPMVQLACHP+LDKLGYS KMRFTY
Sbjct: 278 CGPPPMVQLACHPSLDKLGYSPKMRFTY 305
>ref|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus].
Length = 301
Score = 385 bits (990), Expect = e-107
Identities = 173/268 (64%), Positives = 226/268 (84%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL +P+ KY LRL+DK ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LVIRP
Sbjct: 34 ITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSARIDGNLVIRP 93
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y G
Sbjct: 94 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 153
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 154 KGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 213
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P E+ L+L+
Sbjct: 214 KDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLM 273
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD++G+ ++ F +
Sbjct: 274 CGPPPMIQYACLPNLDRVGHPKERCFAF 301
>ref|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 478
Score = 347 bits (891), Expect = 1e-95
Identities = 156/268 (58%), Positives = 204/268 (76%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL + + KY L L++K ++HNT++FRF LP+ H LGLPVG +V+L A IDG LV+R
Sbjct: 211 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDGVLVVRA 270
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D G+VDL+IK+Y K VHP +PEGGKM+QYL ++K+GD + F+GPSG L Y G
Sbjct: 271 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 330
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
GKF +P K S PE ++ LGMIAGGTGITPMLQLIR I + P D T L+FANQTE
Sbjct: 331 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 390
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DI++R +LEE+ HP QF LW+TLD+PP DW YS GF++ DMI+EHLP P + L+L+
Sbjct: 391 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 450
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGP P++Q A HPNL KLGY++ M FTY
Sbjct: 451 CGPLPLIQTAAHPNLKKLGYTKDMIFTY 478
>ref|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 479
Score = 345 bits (885), Expect = 5e-95
Identities = 155/268 (57%), Positives = 203/268 (75%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL + + KY L L++K ++HNT++FRF LP+ H LGLPVG +V+L A ID LV+R
Sbjct: 212 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDSVLVVRA 271
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D G+VDL+IK+Y K VHP +PEGGKM+QYL ++K+GD + F+GPSG L Y G
Sbjct: 272 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 331
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
GKF +P K S PE ++ LGMIAGGTGITPMLQLIR I + P D T L+FANQTE
Sbjct: 332 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 391
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DI++R +LEE+ HP QF LW+TLD+PP DW YS GF++ DMI+EHLP P + L+L+
Sbjct: 392 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 451
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGP P++Q A HPNL KLGY++ M FTY
Sbjct: 452 CGPLPLIQTAAHPNLKKLGYTKDMIFTY 479
>ref|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus].
Length = 520
Score = 111 bits (278), Expect = 1e-24
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 4/240 (1%)
Frame = +2
Query: 200 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDEDQGY 379
+L+ K V H+TK F LP + H L +PVG+HVYL I G+ +++PYTP+ +
Sbjct: 278 QLVSKEDVTHDTKLFCLMLPPSTH-LEVPVGQHVYLRLPITGTEIVKPYTPVCDSLFSEF 336
Query: 380 VDLVI--KVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNK 553
+ V+ +Y+ + +P G + L+ L++GD V P +G F I +
Sbjct: 337 KEPVLPNNIYIYFLIKIYP-AGFFTPELDQLQIGDYVSVSNP--------EGNFIISQLQ 387
Query: 554 KSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLE 733
+ L ++A GTG TPM++++ L + + L+F N+TE DII R LE
Sbjct: 388 E-------LEDLFLLAAGTGFTPMVKVLNYALTNIPSLRKVKLMFFNKTEDDIIWRSQLE 440
Query: 734 ELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLP--APAEDVLLLLCGPPPMVQ 907
+L A +F++ F L P +W+ +G++S ++ E L + VL+ LCGP P +
Sbjct: 441 KL-AFKDKRFEVEFVLSAPTSEWSGKQGYISPALLSEFLKRRSDTSKVLICLCGPTPFTE 499
>ref|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus].
Length = 195
Score = 62.8 bits (151), Expect = 6e-10
Identities = 45/133 (33%), Positives = 67/133 (50%)
Frame = +2
Query: 191 YLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDED 370
+L+ +D+ T +T RFALP + LGL G+H+ L +D + R YTPI+
Sbjct: 78 FLISAVDRLT--EDTYLVRFALP-GNSQLGLRPGQHLILRGTVDDLEIQRAYTPISPANA 134
Query: 371 QGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPN 550
+GY +++IK Y + G MS+Y+ S K GD +RGP G F +PN
Sbjct: 135 EGYFEVLIKCY---------QTGLMSRYVKSWKAGDTAFWRGPF--------GGFFYKPN 177
Query: 551 KKSPPEPRVARKL 589
+ P R+ R L
Sbjct: 178 QFHGPFTRLWRPL 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,944,618
Number of extensions: 1636085
Number of successful extensions: 6917
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6899
Number of HSP's successfully gapped: 6
Length of query: 424
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,207,134
Effective search space: 4532075746
Effective search space used: 4532075746
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoredu... 515 e-146
Alignment gi|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus ... 389 e-108
Alignment gi|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b... 355 5e-98
Alignment gi|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polyp... 227 2e-59
Alignment gi|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxido... 110 2e-24
Alignment gi|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b... 91 2e-18
>ref|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoreductase type 3,
polypeptide A2 isoform 1 [Canis familiaris].
Length = 305
Score = 515 bits (1327), Expect = e-146
Identities = 244/268 (91%), Positives = 262/268 (97%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
VTLLDP+EKYLLRLLD+TTV+HNTK+FRFALP+AHHVLGLPVGKHVYLSARIDGSLVIRP
Sbjct: 38 VTLLDPDEKYLLRLLDRTTVSHNTKRFRFALPSAHHVLGLPVGKHVYLSARIDGSLVIRP 97
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP+TSDED GYVDLVIKVY+KGVHPKFP+GGKMSQYLNSLK+GDVVEFRGPSGLLTYTG
Sbjct: 98 YTPVTSDEDLGYVDLVIKVYMKGVHPKFPDGGKMSQYLNSLKIGDVVEFRGPSGLLTYTG 157
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
+G F+IQPNKKSPPEP+VA+KLGMIAGGTGITPMLQLI+AILKDPEDPTQC LLFANQTE
Sbjct: 158 RGNFNIQPNKKSPPEPQVAKKLGMIAGGTGITPMLQLIQAILKDPEDPTQCSLLFANQTE 217
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDIILREDLEELQAR+PN+FKLWFTLD PPEDW YSKGFV+ADMIREHLPAP +DVLLLL
Sbjct: 218 KDIILREDLEELQARYPNRFKLWFTLDHPPEDWAYSKGFVTADMIREHLPAPGDDVLLLL 277
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPMVQLACHPNLDKLGYSQKMRFTY
Sbjct: 278 CGPPPMVQLACHPNLDKLGYSQKMRFTY 305
>ref|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus familiaris].
Length = 301
Score = 389 bits (1000), Expect = e-108
Identities = 175/268 (65%), Positives = 225/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+DK +NH+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LVIRP
Sbjct: 34 ITLESPDIKYPLRLIDKEVINHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 93
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y G
Sbjct: 94 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 153
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP DPT C LLFANQTE
Sbjct: 154 KGKFAIRPDKKSNPIIKTVKSVGMIAGGTGITPMLQVIRAIIKDPHDPTVCHLLFANQTE 213
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P E+ L+L+
Sbjct: 214 KDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLILM 273
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD++G+ ++ F +
Sbjct: 274 CGPPPMIQYACLPNLDRVGHPKERCFAF 301
>ref|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1 [Canis
familiaris].
Length = 636
Score = 355 bits (911), Expect = 5e-98
Identities = 158/268 (58%), Positives = 213/268 (79%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL D KYLL L++K ++HNT +FRF LP++ HVLGLP+G +V+L A+IDG +V+R
Sbjct: 369 ITLQDSEAKYLLPLIEKEQISHNTWRFRFGLPSSDHVLGLPIGNYVHLLAKIDGVMVVRA 428
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDL+IKVY K VHP +PEGGKM+QYL ++K+GD + FRGP+G L Y G
Sbjct: 429 YTPVSSDDDRGFVDLIIKVYFKNVHPNYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNG 488
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
G FSI+P K S PE ++ LGMIAGGTGITPMLQLIR I K+P D T+ L+FANQTE
Sbjct: 489 PGNFSIKPYKTSEPEKKLVSHLGMIAGGTGITPMLQLIRHITKNPNDRTRMSLIFANQTE 548
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DI++R +LEE+ HP+QF LW+TLD+PP W YS G+++A+MI+EHLP P + L+L+
Sbjct: 549 EDILVRRELEEVARTHPDQFDLWYTLDRPPVGWKYSSGYITANMIKEHLPPPGQSTLILV 608
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGP P++Q A HPNL+KLGY+++M FTY
Sbjct: 609 CGPMPLIQTAAHPNLEKLGYTKEMIFTY 636
>ref|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polypeptide A2 [Canis lupus
familiaris].
Length = 115
Score = 227 bits (579), Expect = 2e-59
Identities = 106/115 (92%), Positives = 111/115 (96%)
Frame = +2
Query: 623 MLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDW 802
MLQLI+AILKDPEDPTQC LLFANQTEKDIILREDLEELQAR+PN+FKLWFTLD PPEDW
Sbjct: 1 MLQLIQAILKDPEDPTQCSLLFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPEDW 60
Query: 803 TYSKGFVSADMIREHLPAPAEDVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 967
YSKGFV+ADMIREHLPAP +DVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY
Sbjct: 61 AYSKGFVTADMIREHLPAPGDDVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 115
>ref|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxidoreductase [Canis
familiaris].
Length = 485
Score = 110 bits (276), Expect = 2e-24
Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 11/247 (4%)
Frame = +2
Query: 200 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDE---- 367
+L+ K V H+TK F LP + H L +P+G+HVYL I G+ +++PYTP++
Sbjct: 244 QLISKECVTHDTKLFCLMLPPSTH-LQVPIGQHVYLKLTITGTEIVKPYTPVSDFLLSEL 302
Query: 368 -----DQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 532
+ Y+ +IK+Y G+ PE L+ L++GD V P +G
Sbjct: 303 KEPVLNNKYIYFLIKIYAAGLFT--PE-------LDHLQIGDFVSVSNP--------EGN 345
Query: 533 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 712
F I ++ L ++A GTG TPM++++ L + + L+F N+TE DI
Sbjct: 346 FKISQFQE-------LEDLFLLAAGTGFTPMVKILNYALTNIPSLRKVKLMFFNKTEDDI 398
Query: 713 ILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAE--DVLLLLC 886
I R LE+L A +F++ F L P +W +G +S ++ E L + VL+ +C
Sbjct: 399 IWRSQLEKL-AFKDKRFQVEFVLSAPTSEWNGKQGHISPGLLSEFLKRSLDRSKVLICIC 457
Query: 887 GPPPMVQ 907
GP P +
Sbjct: 458 GPTPFTE 464
>ref|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1
[Canis familiaris].
Length = 314
Score = 90.9 bits (224), Expect = 2e-18
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Frame = +2
Query: 173 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 352
L P R+ + +T + RFA+P + LGL G+H+ L ++D + R YTP
Sbjct: 71 LSPETFLAFRISAMDRLTEDTYRVRFAVPR-NSQLGLRPGQHLILRGKVDDLEIQRAYTP 129
Query: 353 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 532
I+ +GY +++IK Y E G MS+Y+ S GD +RGP G
Sbjct: 130 ISPANAEGYFEVLIKCY---------ETGLMSRYVKSWSTGDTTFWRGPF--------GD 172
Query: 533 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 712
F +PN+ +L M+A GTG+ PM+ ++++I + ED T L+ +T + I
Sbjct: 173 FFYKPNQHG--------ELLMLASGTGLAPMVPVLQSITDNAEDETFVTLVGCFKTFEGI 224
Query: 713 ILREDLEELQARHPNQFKLWFTLDQPPE----DWTYSK----GFVSADMIREHLPAPAED 868
L+ L+E QAR N + +F L Q W+Y + G ++ D+I E + +
Sbjct: 225 YLKTFLQE-QARFWN-VRTFFVLSQENSLEKLPWSYREKTRFGRLAQDLIEELVSSCRRK 282
Query: 869 VLLLLCG 889
L+CG
Sbjct: 283 PFALVCG 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,140,776
Number of extensions: 1677707
Number of successful extensions: 6975
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6947
Number of HSP's successfully gapped: 6
Length of query: 424
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 318
Effective length of database: 15,340,888
Effective search space: 4878402384
Effective search space used: 4878402384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens]. 520 e-147
Alignment gi|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 382 e-106
Alignment gi|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Ho... 382 e-106
Alignment gi|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo ... 382 e-106
Alignment gi|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo ... 382 e-106
Alignment gi|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 382 e-106
Alignment gi|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens]. 358 8e-99
Alignment gi|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens]. 106 4e-23
Alignment gi|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapi... 89 1e-17
>ref|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens].
Length = 305
Score = 520 bits (1338), Expect = e-147
Identities = 247/268 (92%), Positives = 261/268 (97%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
VTLLDPNEKYLLRLLDKTTV+HNTK+FRFALPTAHH LGLPVGKH+YLS RIDGSLVIRP
Sbjct: 38 VTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRP 97
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GDVVEFRGPSGLLTYTG
Sbjct: 98 YTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTG 157
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KG F+IQPNKKSPPEPRVA+KLGMIAGGTGITPMLQLIRAILK PEDPTQCFLLFANQTE
Sbjct: 158 KGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTE 217
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDIILREDLEELQAR+PN+FKLWFTLD PP+DW YSKGFV+ADMIREHLPAP +DVL+LL
Sbjct: 218 KDIILREDLEELQARYPNRFKLWFTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLL 277
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPMVQLACHPNLDKLGYSQKMRFTY
Sbjct: 278 CGPPPMVQLACHPNLDKLGYSQKMRFTY 305
>ref|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 382 bits (981), Expect = e-106
Identities = 173/268 (64%), Positives = 223/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+RP
Sbjct: 11 ITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRP 70
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y G
Sbjct: 71 YTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 130
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 131 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 190
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P E+ L+L+
Sbjct: 191 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 250
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD +G+ + F +
Sbjct: 251 CGPPPMIQYACLPNLDHVGHPTERCFVF 278
>ref|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Homo sapiens].
Length = 334
Score = 382 bits (981), Expect = e-106
Identities = 173/268 (64%), Positives = 223/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+RP
Sbjct: 67 ITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRP 126
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y G
Sbjct: 127 YTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 186
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 187 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 246
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P E+ L+L+
Sbjct: 247 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 306
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD +G+ + F +
Sbjct: 307 CGPPPMIQYACLPNLDHVGHPTERCFVF 334
>ref|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo sapiens].
Length = 301
Score = 382 bits (981), Expect = e-106
Identities = 173/268 (64%), Positives = 223/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+RP
Sbjct: 34 ITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRP 93
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y G
Sbjct: 94 YTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 153
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 154 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 213
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P E+ L+L+
Sbjct: 214 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 273
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD +G+ + F +
Sbjct: 274 CGPPPMIQYACLPNLDHVGHPTERCFVF 301
>ref|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 382 bits (981), Expect = e-106
Identities = 173/268 (64%), Positives = 223/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+RP
Sbjct: 11 ITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRP 70
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y G
Sbjct: 71 YTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 130
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 131 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 190
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P E+ L+L+
Sbjct: 191 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 250
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD +G+ + F +
Sbjct: 251 CGPPPMIQYACLPNLDHVGHPTERCFVF 278
>ref|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 382 bits (981), Expect = e-106
Identities = 173/268 (64%), Positives = 223/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+RP
Sbjct: 11 ITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRP 70
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y G
Sbjct: 71 YTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 130
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 131 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 190
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P E+ L+L+
Sbjct: 191 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 250
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNLD +G+ + F +
Sbjct: 251 CGPPPMIQYACLPNLDHVGHPTERCFVF 278
>ref|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens].
Length = 276
Score = 358 bits (918), Expect = 8e-99
Identities = 161/268 (60%), Positives = 212/268 (79%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V L A+ID LV+R
Sbjct: 9 ITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHVLGLPVGNYVQLLAKIDNELVVRA 68
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDL+IK+Y K VHP++PEGGKM+QYL ++K+G+ + FRGP G L Y G
Sbjct: 69 YTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHG 128
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
G I+P++ S P+ +A LGMIAGGTGITPMLQLIR I KDP D T+ L+FANQTE
Sbjct: 129 PGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFANQTE 188
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DI++R++LEE+ HP+QF LW+TLD+PP W YS GFV+ADMI+EHLP PA+ L+L+
Sbjct: 189 EDILVRKELEEIARTHPDQFNLWYTLDRPPIGWKYSSGFVTADMIKEHLPPPAKSTLILV 248
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPP++Q A HPNL+KLGY+Q M FTY
Sbjct: 249 CGPPPLIQTAAHPNLEKLGYTQDMIFTY 276
>ref|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens].
Length = 521
Score = 106 bits (265), Expect = 4e-23
Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 12/248 (4%)
Frame = +2
Query: 200 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 364
+L+ K V H+T+ F LP + H L +P+G+HVYL I G+ +++PYTP++
Sbjct: 279 QLISKEDVTHDTRLFCLMLPPSTH-LQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEF 337
Query: 365 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 529
+ Y+ +IK+Y G+ PE L+ L++GD V P +G
Sbjct: 338 KEPVLPNNKYIYFLIKIYPTGLFT--PE-------LDRLQIGDFVSVSSP--------EG 380
Query: 530 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 709
F I ++ L ++A GTG TPM++++ L D + L+F N+TE D
Sbjct: 381 NFKISKFQE-------LEDLFLLAAGTGFTPMVKILNYALTDIPSLRKVKLMFFNKTEDD 433
Query: 710 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAE--DVLLLL 883
II R LE+L A + + F L P +W +G +S ++ E L + VL+ +
Sbjct: 434 IIWRSQLEKL-AFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLKRNLDKSKVLVCI 492
Query: 884 CGPPPMVQ 907
CGP P +
Sbjct: 493 CGPVPFTE 500
>ref|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapiens].
Length = 315
Score = 88.6 bits (218), Expect = 1e-17
Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Frame = +2
Query: 173 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 352
L+P ++ + +T + RFALP + LGL G+H+ L +D + R YTP
Sbjct: 72 LNPETFVAFCIIAMDRLTKDTYRVRFALP-GNSQLGLRPGQHLILRGIVDDLEIQRAYTP 130
Query: 353 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 532
I+ +GY +++IK Y G+ MS+Y+ S ++GD +RGP G
Sbjct: 131 ISPANAEGYFEVLIKCYQMGL---------MSRYVESWRVGDTAFWRGPF--------GD 173
Query: 533 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 712
F +PN+ +L ++A GTG+ PM+ ++++I + D T L+ +T + I
Sbjct: 174 FFYKPNQYG--------ELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESI 225
Query: 713 ILREDLEELQARHPNQFKLWFTLDQPPED----WTYSK----GFVSADMIREHLPAPAED 868
L+ L+E QAR N + +F L Q W+Y + G + D+I+E +
Sbjct: 226 YLKTFLQE-QARFWN-VRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRK 283
Query: 869 VLLLLCG 889
L+CG
Sbjct: 284 PFALVCG 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,975,653
Number of extensions: 1646792
Number of successful extensions: 6498
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6471
Number of HSP's successfully gapped: 9
Length of query: 424
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,835,944
Effective search space: 4732666136
Effective search space used: 4732666136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus]. 513 e-145
Alignment gi|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus]. 377 e-104
Alignment gi|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus m... 354 7e-98
Alignment gi|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mu... 344 1e-94
Alignment gi|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus]. 108 7e-24
Alignment gi|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus]. 93 5e-19
>ref|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus].
Length = 305
Score = 513 bits (1320), Expect = e-145
Identities = 244/268 (91%), Positives = 262/268 (97%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
VTL DP+EKYLLRLLDKTTV+HNT++FRFALPTAHH+LGLPVGKHVYLSARIDGSLVIRP
Sbjct: 38 VTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSARIDGSLVIRP 97
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GD+VEFRGPSGLL+Y G
Sbjct: 98 YTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAG 157
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KG F+IQPNKKSPPE RVA+KLGMIAGGTGITPMLQLIRAILK PEDPTQCFLLFANQTE
Sbjct: 158 KGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTE 217
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DIILREDLEELQA++PN+FKLWFTLD PPEDWTYSKGFV+ADMI+EHLPAPAEDVLLLL
Sbjct: 218 RDIILREDLEELQAQYPNRFKLWFTLDSPPEDWTYSKGFVTADMIQEHLPAPAEDVLLLL 277
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPMVQLACHPNLDKLGYSQKMRFTY
Sbjct: 278 CGPPPMVQLACHPNLDKLGYSQKMRFTY 305
>ref|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus].
Length = 301
Score = 377 bits (967), Expect = e-104
Identities = 166/268 (61%), Positives = 224/268 (83%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL +P+ KY LRL+DK ++ +T++FRFALP+ H+LGLP+G+H+YLS RIDG+LVIRP
Sbjct: 34 ITLENPDIKYPLRLIDKEVISPDTRRFRFALPSPQHILGLPIGQHIYLSTRIDGNLVIRP 93
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDLV+KVY K HPKFP GGKMSQYL ++K+GD +EFRGP+GLL Y G
Sbjct: 94 YTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMKIGDTIEFRGPNGLLVYQG 153
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+ +KKS P R + +GMIAGGTGITPMLQ+IRA+LKDP D T C+LLFANQ+E
Sbjct: 154 KGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSE 213
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ H +FKLW+T+D+ P+ W YS+GFV+ +MIR+HLP P E+ L+L+
Sbjct: 214 KDILLRPELEELRNEHSARFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPTPGEEPLILM 273
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNL+++G+ ++ FT+
Sbjct: 274 CGPPPMIQFACLPNLERVGHPKERCFTF 301
>ref|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus musculus].
Length = 276
Score = 354 bits (909), Expect = 7e-98
Identities = 162/268 (60%), Positives = 208/268 (77%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V+L A+I+ LVIR
Sbjct: 9 ITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNELVIRA 68
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+DQG+VDL+IK+Y K VHPK+PEGGKM+QYL ++K+GD + FRGP+G L Y
Sbjct: 69 YTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNE 128
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
G I+ NK S PE ++ LGMIAGGTGITPMLQLIR I KD D T+ LLFANQTE
Sbjct: 129 PGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFANQTE 188
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
+DI+LR++LEE+ H QF LW+TLD+PP DW YS GFVSADMI+EHLP P ED L+L+
Sbjct: 189 EDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADMIKEHLPPPGEDTLILV 248
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPP++Q A HP+L++L Y++ M F Y
Sbjct: 249 CGPPPLIQAAAHPSLEQLSYTKDMIFIY 276
>ref|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mus musculus].
Length = 292
Score = 344 bits (882), Expect = 1e-94
Identities = 162/284 (57%), Positives = 208/284 (73%), Gaps = 16/284 (5%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V+L A+I+ LVIR
Sbjct: 9 ITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNELVIRA 68
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+DQG+VDL+IK+Y K VHPK+PEGGKM+QYL ++K+GD + FRGP+G L Y
Sbjct: 69 YTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNE 128
Query: 524 KG----------------KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKD 655
G I+ NK S PE ++ LGMIAGGTGITPMLQLIR I KD
Sbjct: 129 PGCQTRAAEVKNIFIFLGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKD 188
Query: 656 PEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADM 835
D T+ LLFANQTE+DI+LR++LEE+ H QF LW+TLD+PP DW YS GFVSADM
Sbjct: 189 TSDETRMSLLFANQTEEDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADM 248
Query: 836 IREHLPAPAEDVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 967
I+EHLP P ED L+L+CGPPP++Q A HP+L++L Y++ M F Y
Sbjct: 249 IKEHLPPPGEDTLILVCGPPPLIQAAAHPSLEQLSYTKDMIFIY 292
>ref|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus].
Length = 528
Score = 108 bits (271), Expect = 7e-24
Identities = 74/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%)
Frame = +2
Query: 200 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 364
+L+ K V H+T+ F LP + H L +PVG+HVYL + G+ +++PYTP++
Sbjct: 286 QLISKEDVTHDTRLFCLMLPPSTH-LQVPVGQHVYLKLSVTGAEIVKPYTPVSDSLLSDF 344
Query: 365 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 529
Y+ +IK+Y G+ PE L+ L++GD + GP +G
Sbjct: 345 KEPVLSPNKYICFLIKIYPAGLFT--PE-------LDRLQIGDFISVSGP--------EG 387
Query: 530 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 709
F + ++ L ++A GTG TPM+ ++ L + L+F N+TE D
Sbjct: 388 DFKVSKLQE-------VEDLFLLAAGTGFTPMVTVLNYALSHMSSLRKVKLMFFNKTEDD 440
Query: 710 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAED--VLLLL 883
II R LE+L R +F + F L P +W +G +S ++ E L +E+ L +
Sbjct: 441 IIWRCQLEKLALRE-KRFDVEFVLSAPSPEWNGKQGHISRALLSEFLQRSSENSRAFLCI 499
Query: 884 CGPPP 898
CGP P
Sbjct: 500 CGPTP 504
>ref|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus].
Length = 256
Score = 92.8 bits (229), Expect = 5e-19
Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 8/249 (3%)
Frame = +2
Query: 173 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 352
L P + V +T RF LP + LGL G+H+ L +DG + R YTP
Sbjct: 13 LSPETFLAFHISTMEKVTKDTYLVRFTLP-GNSRLGLRPGQHLILRGVVDGLEIQRAYTP 71
Query: 353 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 532
I+ +GY D++IK Y G+ MSQY+ S + GD +RGP G Y
Sbjct: 72 ISPVTAEGYFDVLIKCYRTGL---------MSQYVESWRTGDTAFWRGPFGSFLY----- 117
Query: 533 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 712
EP+ +L M+A GTG+ PM+ ++++I D +D T L+ +T + I
Sbjct: 118 -----------EPKKYGELLMLAAGTGLAPMVPILQSITDDEDDETFVTLVGCFKTFEGI 166
Query: 713 ILREDLEELQARHPNQFKLWFTLDQ--PPED--WTYSK----GFVSADMIREHLPAPAED 868
L+ +E QAR N + +F L Q PE W+Y G + +++ E +
Sbjct: 167 YLKTFFQE-QARFWN-VQTFFVLSQEVSPEQLPWSYRDKTHFGRLGQELVAELVACCRRK 224
Query: 869 VLLLLCGPP 895
L+CG P
Sbjct: 225 PFTLVCGSP 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,315,241
Number of extensions: 1368404
Number of successful extensions: 5366
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5346
Number of HSP's successfully gapped: 6
Length of query: 424
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 320
Effective length of database: 12,493,815
Effective search space: 3998020800
Effective search space used: 3998020800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa]. 552 e-157
Alignment gi|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-li... 387 e-108
Alignment gi|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [S... 115 5e-26
Alignment gi|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochr... 82 6e-16
Alignment gi|XP_003356510.1| PREDICTED: NADH-cytochrome b5 reductase-like... 56 5e-08
>ref|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa].
Length = 305
Score = 552 bits (1422), Expect = e-157
Identities = 268/268 (100%), Positives = 268/268 (100%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP
Sbjct: 38 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 97
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG
Sbjct: 98 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 157
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE
Sbjct: 158 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 217
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL
Sbjct: 218 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 277
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPMVQLACHPNLDKLGYSQKMRFTY
Sbjct: 278 CGPPPMVQLACHPNLDKLGYSQKMRFTY 305
>ref|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-like [Sus scrofa].
Length = 301
Score = 387 bits (993), Expect = e-108
Identities = 175/268 (65%), Positives = 226/268 (84%)
Frame = +2
Query: 164 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 343
+TL +P+ KY LRL+DK VNH+T++FRFALP+ HVLGLPVG+H+YLSARIDG+LVIRP
Sbjct: 34 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHVLGLPVGQHIYLSARIDGNLVIRP 93
Query: 344 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 523
YTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y G
Sbjct: 94 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 153
Query: 524 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 703
KGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQTE
Sbjct: 154 KGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 213
Query: 704 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAEDVLLLL 883
KDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P E+ L+L+
Sbjct: 214 KDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLM 273
Query: 884 CGPPPMVQLACHPNLDKLGYSQKMRFTY 967
CGPPPM+Q AC PNL+++G+ ++ F +
Sbjct: 274 CGPPPMIQYACLPNLERVGHPKERCFAF 301
>ref|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [Sus scrofa].
Length = 281
Score = 115 bits (288), Expect = 5e-26
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 12/248 (4%)
Frame = +2
Query: 200 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 364
+L+ K V H+TK F LP + H L +PVG+HVYL I G+ +++PYTP++
Sbjct: 56 QLISKEDVTHDTKLFSVMLPPSTH-LQVPVGQHVYLKLTIAGTEIVKPYTPVSDSLVPEF 114
Query: 365 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 529
+ Y+ ++K+Y G+ PE L+ L++GD V P +G
Sbjct: 115 KEPVFPNSKYIYFLVKIYPAGLFT--PE-------LDLLQIGDYVSVSNP--------EG 157
Query: 530 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 709
F I ++ L ++A GTG TPM++++ L + L+F N+TE D
Sbjct: 158 SFKISQFQEM-------EDLFLLAAGTGFTPMVKVLHYALTGIPSLRKVKLMFFNKTEDD 210
Query: 710 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAE--DVLLLL 883
II R LE+L A +F + F L PP +W+ +G++S ++ E L E VL+ +
Sbjct: 211 IIWRSQLEKL-ALKDKRFDVEFVLSAPPSEWSGKQGYISPALLSEFLKKSLEKSKVLICI 269
Query: 884 CGPPPMVQ 907
CGP P +
Sbjct: 270 CGPTPFTE 277
>ref|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochrome b5 reductase-like
[Sus scrofa].
Length = 313
Score = 82.0 bits (201), Expect = 6e-16
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 4/192 (2%)
Frame = +2
Query: 245 RFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPK 424
RFALP + LGL G+H+ L +D + R YTPI+ +GY +++IK Y
Sbjct: 94 RFALP-GNSQLGLRPGQHLILRGTVDDLEIQRAYTPISPANTEGYFEVLIKCY------- 145
Query: 425 FPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAG 604
+ G MSQ + S ++GD +RGP G Y +P +L M+A
Sbjct: 146 --QTGLMSQCVKSWRVGDAAFWRGPFGSFCY----------------KPNQYGELLMLAA 187
Query: 605 GTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLD 784
GTG+ PM+ ++++I + ED T L+ +T + I L+ L+E QAR N + +F L
Sbjct: 188 GTGLAPMVPILQSITDNAEDETFVTLVGCFKTFEGIYLKAFLQE-QARFWN-VRTFFVLS 245
Query: 785 Q--PPED--WTY 808
Q PE W+Y
Sbjct: 246 QENSPEQLPWSY 257
>ref|XP_003356510.1| PREDICTED: NADH-cytochrome b5 reductase-like, partial [Sus scrofa].
Length = 170
Score = 55.8 bits (133), Expect = 5e-08
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Frame = +2
Query: 437 GKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGI 616
G MSQ + S ++GD +RGP G Y +P +L M+A GTG+
Sbjct: 5 GLMSQCVKSWRVGDAAFWRGPFGSFCY----------------KPNQYGELLMLAAGTGL 48
Query: 617 TPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQ--P 790
PM+ ++++I + ED T L+ +T + I L+ L+E QAR N + +F L Q
Sbjct: 49 APMVPILQSITDNAEDETFVTLVGCFKTFEGIYLKAFLQE-QARFWN-VRTFFVLSQENS 106
Query: 791 PED--WTYSK----GFVSADMIREHLPAPAEDVLLLLCGPPPMVQ 907
PE W+Y G + D++ E + + L+CG Q
Sbjct: 107 PEQLPWSYRDKTRFGRLGQDLVDELVGSCRRKPFALVCGSAEFTQ 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,866,819
Number of extensions: 1056817
Number of successful extensions: 4391
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4376
Number of HSP's successfully gapped: 5
Length of query: 424
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 322
Effective length of database: 8,804,438
Effective search space: 2835029036
Effective search space used: 2835029036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002635
(1272 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 864 0.0
Sscrofa_Chr01 186 2e-44
>Sscrofa_Chr10
|| Length = 79102373
Score = 864 bits (436), Expect = 0.0
Identities = 469/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Minus
Query: 796 agattggacctacagcaagggttttgtgtctgccgacatgatccgggagcacctgcctgc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285152 agattggacctacagcaagggttttgtgtctgccgacatgatccgggagcacctgcctgc 29285093
Query: 856 cccagcagaggacgtgttgctgctgctgtgtgggccaccccccatggtgcagctggcctg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285092 cccagcagaggacgtgttgctgctgctgtgtgggccaccccccatggtgcagctggcctg 29285033
Query: 916 ccaccccaacctagacaaactgggctactcacagaagatgcgcttcacctactgagcatc 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285032 ccaccccaacctagacaaactgggctactcacagaagatgcgcttcacctactgagcatc 29284973
Query: 976 ctctcgtttccctggtctcgctgccagcatctgcccccagccagcacctagtgctctgag 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29284972 ctctcgtttccctggtctcgctgccagcatctgcccccagccagcacctagtgctctgag 29284913
Query: 1036 ccttagatgcccttcccaatggccccagcctttttgtcttactctggaactggaatctga 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29284912 ccttagatgcccttcccaatggccccagcctttttgtcttactctggaactggaatctga 29284853
Query: 1096 atggtacctgcaagaaacacatccttatagccatcaagaaggccaaggctgaatcagtcc 1155
|||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29284852 atggtacctgcaggaacaacatccttatagccatcaagagggccaaggctgagtcagtcc 29284793
Query: 1156 ctggaagccccacccccatctccctgtgatgcanggtccaggtcaggcccacagagcaga 1215
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 29284792 ctggaagccccacccccatctccctgtgatgcaaggtccaggtcaggcccacagagcaga 29284733
Query: 1216 cgtacccngaaacag-aagaagaaagcatgtacacctgttccaggactggctagttcc 1272
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29284732 cgtacccgg-aacagaaagaagaaagcatgtacacctgttccaggactggctagttcc 29284676
Score = 692 bits (349), Expect = 0.0
Identities = 522/575 (90%), Gaps = 9/575 (1%)
Strand = Plus / Plus
Query: 705 aggacataatcttacgggaggacttggaggagctgcaggcacgacaccccaatcagttta 764
||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||
Sbjct: 13050831 aggacataatcttacgggaggacttagaggagctgtgggtgcaacaccccaatcagttta 13050890
Query: 765 agctctggttcactctggatcagcccccagaagattggacctacagcaagggttttgtgt 824
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 13050891 agctctggttcactctggatcagccccc-gaagactggacctacagcaagggttttgtgt 13050949
Query: 825 ctgccgacatgatccgggagcacctgcctgccccagcagaggacgtgttgctgctgctgt 884
||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 13050950 ctgccgacatgatccaggagcacctgcctgccccagcagaggatgtgctgctgctgctgg 13051009
Query: 885 gtgggccaccccccatggtgcagctggcctgccaccccaacctagacaaactgggctact 944
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 13051010 gtgggccaccccccatggtgcagctggcctgccaccccaacctggacaaactgggctcct 13051069
Query: 945 cacagaagatgcgcttcacctactgagcatcctctcgtttccctggtctcgctgccagca 1004
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct: 13051070 cgcagaagatgcgcttcacctactgaacatcctctcgtttccctggtcttgctgctggca 13051129
Query: 1005 tctgcccccagccagcacctagtgctctgagccttagatgcccttcccaatggccccagc 1064
||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||
Sbjct: 13051130 tctgcccccagccagcacctagtgctctgagccctagatgcctttcccaacagtcccagc 13051189
Query: 1065 ctttttgtcttactctggaactggaatctgaatggtacctgcaagaaacacatccttata 1124
|||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || |
Sbjct: 13051190 ctttctgtcttactctggaactggaatctgaatggtacctgcaggaacaacatccctaca 13051249
Query: 1125 gccatcaagaaggccaaggctgaatcagtccctggaag-ccccaccccc-----atctcc 1178
|||||||| | |||||||||||| |||||||||||||| |||||||||| | ||||
Sbjct: 13051250 gccatcaaaagggccaaggctgagtcagtccctggaagcccccacccccacccaaactcc 13051309
Query: 1179 ctgtgatgcanggtccaggtcaggcccacagagcagacgtacccngaaacag-aagaaga 1237
|||||||| | ||||||| ||||| ||||||||||||| ||||| | ||| |||| |
Sbjct: 13051310 ctgtgatgaaaggtccagatcaggtccacagagcagacatacccgg-gtcagaaagatgg 13051368
Query: 1238 aagcatgtacacctgttccaggactggctagttcc 1272
||||||||||| |||||||||||||||||||||||
Sbjct: 13051369 aagcatgtacaactgttccaggactggctagttcc 13051403
Score = 283 bits (143), Expect = 1e-73
Identities = 149/151 (98%)
Strand = Plus / Minus
Query: 67 gagtccagtcctgctggcttccctgggggtggggctgctgagtctgcttggcctagctct 126
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29289542 gagtccagtcctgctggcttccctgggggtggggctgctgagtctgtttggcctagctct 29289483
Query: 127 gggctcctacctcctgcggagatcccgccggccgctggtcacgctcctggaccccaatga 186
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29289482 gggctcctacctcctgcggagatcccgccggccgctggtcacgctcttggaccccaatga 29289423
Query: 187 aaagtacctgctgcgactgttagataaaacg 217
|||||||||||||||||||||||||||||||
Sbjct: 29289422 aaagtacctgctgcgactgttagataaaacg 29289392
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 396 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288346 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 29288287
Query: 456 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288286 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 29288227
Query: 516 acaccgggaaagg 528
|||||||||||||
Sbjct: 29288226 acaccgggaaagg 29288214
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 290 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288688 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 29288629
Query: 350 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 399
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288628 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 29288579
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 695 cagaccgaaaaggacataatcttacgggaggacttggaggagctgcaggcacgacacccc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285507 cagaccgaaaaggacataatcttacgggaggacttggaggagctgcaggcacgacacccc 29285448
Query: 755 aatcagtttaagctctggttcactctggatcagcccccagaag 797
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285447 aatcagtttaagctctggttcactctggatcagcccccagaag 29285405
Score = 194 bits (98), Expect = 8e-47
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 290 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 349
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 78746579 ggcaaacatgtctacctctctgcctgcatcaacggcagtcttgtcatcaggccctacact 78746638
Query: 350 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 399
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 78746639 cccatcaccagcgatgaggaccaaggctacgtggatcgtgtcatcaaggt 78746688
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 526 aggaaagttcagcattcagcccaacaagaaatctccgccggaaccccgagtggccaggaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29287534 aggaaagttcagcattcagcccaacaagaaatctccgccggaaccccgagtggccaggaa 29287475
Query: 586 actgggaatgattgccggaggcacagg 612
|||||||||||||||||||||||||||
Sbjct: 29287474 actgggaatgattgccggaggcacagg 29287448
Score = 168 bits (85), Expect = 5e-39
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 609 cagggatcaccccgatgctgcagctgatccgggccatcttgaaagacccagaagatccaa 668
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29286323 cagggatcaccccgatgctgcagctgatccgggccatcctgaaagacccagaagatccaa 29286264
Query: 669 cccagtgctttctgctttttgccaaccag 697
|||||||||||||||||||||||||||||
Sbjct: 29286263 cccagtgctttctgctttttgccaaccag 29286235
Score = 161 bits (81), Expect = 1e-36
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 396 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 455
|||||||| |||||||| |||||||||||||||||||||| || ||| |||||| |||||
Sbjct: 78746926 aggtctacttgaagggcatgcaccccaaatttcctgagggtggaaaggtgtctctgtacc 78746985
Query: 456 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 515
||||||||||||||||||||||||||||| | || ||||| ||||||||||||| ||||
Sbjct: 78746986 agaatagcctgaagcttggggatgtggtggcgatttgagggtccagtgggttgcttactt 78747045
Query: 516 acaccgggaaagg 528
|||| ||||||||
Sbjct: 78747046 acactgggaaagg 78747058
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 217 gaccgtgaaccacaacactaagaagttccgctttgccctgcccaccgcccaccacgttct 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29289277 gaccgtgaaccacaacactaagaagttccgctttgccctgcccaccgcccaccacgttct 29289218
Query: 277 ggggctgcctgtggg 291
|||||||||||||||
Sbjct: 29289217 ggggctgcctgtggg 29289203
Score = 107 bits (54), Expect = 1e-20
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 10 gatctgcaggccggctgcgcggtggaggtcgcggttctccgtcatggggttccagccg 67
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 29289916 gatctgcaggccggctgcgcggtggaggtcccggttctccgtcatggggttccagccg 29289859
>Sscrofa_Chr01
|| Length = 315321322
Score = 186 bits (94), Expect = 2e-44
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 290 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 349
|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 312977819 ggcaaacatgtctacctctctgcctgcatcaatggcagtcttgtcatcaggccctacact 312977878
Query: 350 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 399
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312977879 cccatcaccagcgatgaggaccaaggctacgtggatcgtgtcatcaaggt 312977928
Score = 168 bits (85), Expect = 5e-39
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 396 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 455
|||||||| |||||||| |||||||||||||||||||||| || ||| |||||| |||||
Sbjct: 312978166 aggtctacttgaagggcatgcaccccaaatttcctgagggtggaaaggtgtctctgtacc 312978225
Query: 456 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 515
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct: 312978226 agaatagcctgaagcttggggatgtggtggagatttgagggtccagtgggttgcttactt 312978285
Query: 516 acaccgggaaagg 528
|||| ||||||||
Sbjct: 312978286 acactgggaaagg 312978298
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,518,090
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 15
Length of query: 1272
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1251
Effective length of database: 2,808,413,156
Effective search space: 3513324858156
Effective search space used: 3513324858156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)